Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 183 of 284
Found at i:61967913 original size:23 final size:23
Alignment explanation
Indices: 61967877--61967986 Score: 86
Period size: 23 Copynumber: 4.8 Consensus size: 23
61967867 AGACTCACCA
* *
61967877 CAGCTCGTATGAGCTTACCGTTT
1 CAGCTCTTACGAGCTTACCGTTT
*
61967900 CAGCTCTTACGAGCTTACCATTT
1 CAGCTCTTACGAGCTTACCGTTT
* * *
61967923 -AGATCTT-CAGAGCATACTGTTT
1 CAGCTCTTAC-GAGCTTACCGTTT
*
61967945 CAG-TCCTTA-GAGGCTTATCGTTT
1 CAGCT-CTTACGA-GCTTACCGTTT
61967968 CAGCTC-TACGGAGCTTACC
1 CAGCTCTTAC-GAGCTTACC
61967987 ACTAGCTCAA
Statistics
Matches: 68, Mismatches: 11, Indels: 16
0.72 0.12 0.17
Matches are distributed among these distances:
21 1 0.01
22 21 0.31
23 43 0.63
24 3 0.04
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (23 bp):
CAGCTCTTACGAGCTTACCGTTT
Found at i:61975800 original size:25 final size:27
Alignment explanation
Indices: 61975752--61975810 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 27
61975742 CCCAACTATC
61975752 ATATTTTTATTAGGCAATACTTTCCATGT
1 ATATTTTTATTAGGC-A-ACTTTCCATGT
61975781 ATATTTTTATTAGGC-A-TTTCCATGT
1 ATATTTTTATTAGGCAACTTTCCATGT
61975806 -TATTT
1 ATATTT
61975811 ACGTTTTCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 5 0.17
25 9 0.30
26 1 0.03
29 15 0.50
ACGTcount: A:0.25, C:0.12, G:0.10, T:0.53
Consensus pattern (27 bp):
ATATTTTTATTAGGCAACTTTCCATGT
Found at i:61978694 original size:22 final size:22
Alignment explanation
Indices: 61978649--61978710 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
61978639 AATACGATTA
** * *
61978649 GCACAAAGCCATAAACAAGATG
1 GCACAAAGCCATAATTAGGTTG
*
61978671 GCACAAAGCCATATTTAGGTTG
1 GCACAAAGCCATAATTAGGTTG
*
61978693 GCACAGAGCCATAATTAG
1 GCACAAAGCCATAATTAG
61978711 ATTAAGCTGT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.18
Consensus pattern (22 bp):
GCACAAAGCCATAATTAGGTTG
Found at i:61979116 original size:27 final size:26
Alignment explanation
Indices: 61979082--61979718 Score: 589
Period size: 27 Copynumber: 23.7 Consensus size: 26
61979072 CTAAGGGGTG
* *
61979082 TTCGGTAATTTTACACTACAAGGGTAT
1 TTCGGTAATTTTACA-AACGAGGGTAT
** *
61979109 TTTAGTAATTTTACAAACTGGGGGTAT
1 TTCGGTAATTTTACAAAC-GAGGGTAT
*
61979136 TTCAGTAATTTTACAAATCGAGGGTAT
1 TTCGGTAATTTTACAAA-CGAGGGTAT
* * **
61979163 TTCGATAATTTTATAATTTGAGGGTAT
1 TTCGGTAATTTTACAA-ACGAGGGTAT
*
61979190 TTCGATAATTTTACAAACTG-GGGTAT
1 TTCGGTAATTTTACAAAC-GAGGGTAT
* **
61979216 TTCGATAATTTTACAGTCAGAGGGTAT
1 TTCGGTAATTTTACAAAC-GAGGGTAT
** **
61979243 TTCAATAATTTTACAAATCGAGATTAT
1 TTCGGTAATTTTACAAA-CGAGGGTAT
* *
61979270 TTTGGTAATTTTACAAACTGGGGGTAT
1 TTCGGTAATTTTACAAAC-GAGGGTAT
*
61979297 TTCGGTAATTTTACAAACTAGGGGTAT
1 TTCGGTAATTTTACAAACGA-GGGTAT
* **
61979324 TTCAGTAATTTTACAATTTGAGGGTAT
1 TTCGGTAATTTTACAA-ACGAGGGTAT
*
61979351 TTTGGTAATTTTACAAACTGAGGGTAT
1 TTCGGTAATTTTACAAAC-GAGGGTAT
* *
61979378 TTCAGTAATTTTATAAACCG-GGGTAT
1 TTCGGTAATTTTACAAA-CGAGGGTAT
61979404 TTCGGTAATTTTACAAACAGAGGGTAT
1 TTCGGTAATTTTACAAAC-GAGGGTAT
* *
61979431 TTCGATAATTTTACAAACTGGGGGTAT
1 TTCGGTAATTTTACAAAC-GAGGGTAT
* * **
61979458 TTCAGTAATTTTAC-AATGTAAAAGTAT
1 TTCGGTAATTTTACAAACG--AGGGTAT
*
61979485 TTCAGTAATTTTACAAATC-ATGGGTAT
1 TTCGGTAATTTTACAAA-CGA-GGGTAT
* *
61979512 TTTGGTAATTTTACAAACTGGGGGTAT
1 TTCGGTAATTTTACAAAC-GAGGGTAT
* *
61979539 TTCGGTAATTTTACAATTCAAGGGTAT
1 TTCGGTAATTTTACAA-ACGAGGGTAT
* * * *
61979566 TTTGATAATTTTACAAAATGGGGGTAT
1 TTCGGTAATTTTAC-AAACGAGGGTAT
*
61979593 TTCGGTAATTTTACAAATCGAAGGTAT
1 TTCGGTAATTTTACAAA-CGAGGGTAT
**
61979620 TTTAGTAATTTTACAAATCGAGGGTAT
1 TTCGGTAATTTTACAAA-CGAGGGTAT
* *
61979647 TTCGGTAATTTTACAATTCGAGAGTAT
1 TTCGGTAATTTTACAA-ACGAGGGTAT
*
61979674 TTCGGTAATTTTACAAACTGGGGGTAT
1 TTCGGTAATTTTACAAAC-GAGGGTAT
61979701 TTCGGTAATTTTACAAAC
1 TTCGGTAATTTTACAAAC
61979719 AATGGTCTTA
Statistics
Matches: 500, Mismatches: 85, Indels: 50
0.79 0.13 0.08
Matches are distributed among these distances:
25 2 0.00
26 56 0.11
27 433 0.87
28 9 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (26 bp):
TTCGGTAATTTTACAAACGAGGGTAT
Found at i:61979191 original size:81 final size:81
Alignment explanation
Indices: 61979102--61979717 Score: 716
Period size: 81 Copynumber: 7.6 Consensus size: 81
61979092 TTACACTACA
*
61979102 AGGGTATTTTAGTAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCG
1 AGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCG
* *
61979167 ATAATTTTATAATTTG
66 ATAATTTTACAAATTG
* * *
61979183 AGGGTATTTCGATAATTTTACAAACT-GGGGTATTTC-GATAATTTTAC-AGTCAGAGGGTATTT
1 AGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTCAG-TAATTTTACAAATC-GAGGGTATTT
* *
61979245 CAATAATTTTACAAATCG
64 CGATAATTTTACAAATTG
** * *
61979263 AGATTATTTTGGTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTC
1 AGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAATCGA-GGGTATTTC
*
61979327 -AGTAATTTTACAATTTG
65 GA-TAATTTTACAAATTG
* * *
61979344 AGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCAGTAATTTTATAAACCG-GGGTATTTCG
1 AGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCG
* **
61979408 GTAATTTTACAAACAG
66 ATAATTTTACAAATTG
* * **
61979424 AGGGTATTTCGATAATTTTACAAACTGGGGGTATTTCAGTAATTTTAC-AAT-GTAAAAGTATTT
1 AGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAATCG--AGGGTATTT
*
61979487 C-AGTAATTTTACAAA-TC
64 CGA-TAATTTTACAAATTG
* * * *
61979504 ATGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAATTCAAGGGTATTTT
1 A-GGGTATTTTGGTAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTC
*
61979569 GATAATTTTACAAAATG
65 GATAATTTTACAAATTG
* * ** *
61979586 GGGGTATTTCGGTAATTTTACAAA-TCGAAGGTATTTTAGTAATTTTACAAATCGAGGGTATTTC
1 AGGGTATTTTGGTAATTTTACAAACT-GGGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTC
*
61979650 GGTAATTTTAC-AATTCG
65 GATAATTTTACAAATT-G
* * *
61979667 AGAGTATTTCGGTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAAA
1 AGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAA
61979718 CAATGGTCTT
Statistics
Matches: 452, Mismatches: 62, Indels: 42
0.81 0.11 0.08
Matches are distributed among these distances:
78 1 0.00
79 6 0.01
80 137 0.30
81 300 0.66
82 8 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCG
ATAATTTTACAAATTG
Found at i:61987451 original size:17 final size:18
Alignment explanation
Indices: 61987424--61987457 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
61987414 AATTAAATAT
61987424 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
61987442 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
61987458 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:61994428 original size:27 final size:27
Alignment explanation
Indices: 61994393--61994598 Score: 243
Period size: 27 Copynumber: 7.6 Consensus size: 27
61994383 TTAGTTTACC
* *
61994393 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
61994420 AACTTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
61994447 AAATTACTAAAATACCACTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
61994474 AAATTATCAAAATACTCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
61994501 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
61994528 AAATTACCAAAATA-CCCTCAGTTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
61994555 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
61994582 AAATTATCAAAATACCC
1 AAATTACCAAAATACCC
61994599 TCGACCTGTA
Statistics
Matches: 151, Mismatches: 26, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
26 3 0.02
27 144 0.95
28 4 0.03
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:61994608 original size:27 final size:26
Alignment explanation
Indices: 61994400--61994659 Score: 177
Period size: 27 Copynumber: 9.7 Consensus size: 26
61994390 ACCAAATCAC
* *
61994400 CAAAATACCC-CTAGTTTGTAAACTTA
1 CAAAATACCCTCGA-TTTGTAAAATTA
* * **
61994426 CCAAAATACCCTTGGTTTACAAAATTA
1 -CAAAATACCCTCGATTTGTAAAATTA
*
61994453 CTAAAATACCACT-GGTTTGTAAAATTA
1 C-AAAATACC-CTCGATTTGTAAAATTA
* * *
61994480 TCAAAATACTCTTGGTTTGTAAAATTA
1 -CAAAATACCCTCGATTTGTAAAATTA
* * *
61994507 CTAAAATACCCTTGGTTTATAAAATTA
1 C-AAAATACCCTCGATTTGTAAAATTA
61994534 CCAAAATACCCTC-AGTTTGTAAAATTA
1 -CAAAATACCCTCGA-TTTGTAAAATTA
*
61994561 CCAAAATACCC-CTAGTTTGTAAAATTA
1 -CAAAATACCCTCGA-TTTGTAAAATTA
**
61994588 TCAAAATACCCTCGACCTGTAAAATTA
1 -CAAAATACCCTCGATTTGTAAAATTA
* * * *
61994615 CTGAAACACCCTCGACTTGTAAAATAA
1 C-AAAATACCCTCGATTTGTAAAATTA
* *
61994642 CCAAAGTACCCCCGATTT
1 -CAAAATACCCTCGATTT
61994660 ACAGAATTGT
Statistics
Matches: 194, Mismatches: 27, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
26 6 0.03
27 181 0.93
28 7 0.04
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (26 bp):
CAAAATACCCTCGATTTGTAAAATTA
Found at i:61994611 original size:81 final size:79
Alignment explanation
Indices: 61994393--61994653 Score: 297
Period size: 81 Copynumber: 3.2 Consensus size: 79
61994383 TTAGTTTACC
* * *
61994393 AAATCACCAAAATACCCCTAGTTTGTAAACTTACCAAAATACCCTTGGTTTACAAAATTACTAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTA-CAAAATACCCTTGGTTTATAAAATTACTAAA
*
61994458 ATACCACTGGTTTGTA
65 ATACC-CTCGTTTGTA
* * * * *
61994474 AAATTATCAAAATACTCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTAC-AAAATACCCTTGGTTTATAAAATTACTAAA
61994539 ATACCCTCAGTTTGTA
65 ATACCCTC-GTTTGTA
* *** * *
61994555 AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCTCGACCTGTAAAATTACTGAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTA-CAAAATACCCTTGGTTTATAAAATTACTAAA
* *
61994620 ACACCCTCGACTTGTA
65 ATACCCTCG-TTTGTA
* *
61994636 AAATAACCAAAGTACCCC
1 AAATTACCAAAATACCCC
61994654 CGATTTACAG
Statistics
Matches: 152, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
80 4 0.03
81 147 0.97
82 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (79 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACAAAATACCCTTGGTTTATAAAATTACTAAAA
TACCCTCGTTTGTA
Found at i:61994635 original size:54 final size:54
Alignment explanation
Indices: 61994401--61994659 Score: 220
Period size: 54 Copynumber: 4.8 Consensus size: 54
61994391 CCAAATCACC
* * * * * **
61994401 AAAATACCC-CTAGTTTGTAAACTTACCAAAATACCCTTGGTTTACAAAATTACT
1 AAAATACCCTCGA-TTTGTAAAATTATCAAAATACCCTCGATTTGTAAAATTACT
* * * *
61994455 AAAATACCACT-GGTTTGTAAAATTATCAAAATACTCTTGGTTTGTAAAATTACT
1 AAAATACC-CTCGATTTGTAAAATTATCAAAATACCCTCGATTTGTAAAATTACT
* * * * *
61994509 AAAATACCCTTGGTTTATAAAATTACCAAAATACCCTC-AGTTTGTAAAATTACC
1 AAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGA-TTTGTAAAATTACT
* **
61994563 AAAATACCC-CTAGTTTGTAAAATTATCAAAATACCCTCGACCTGTAAAATTACT
1 AAAATACCCTCGA-TTTGTAAAATTATCAAAATACCCTCGATTTGTAAAATTACT
* * * * * * *
61994617 GAAACACCCTCGACTTGTAAAATAACCAAAGTACCCCCGATTT
1 AAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTT
61994660 ACAGAATTGT
Statistics
Matches: 167, Mismatches: 31, Indels: 14
0.79 0.15 0.07
Matches are distributed among these distances:
53 2 0.01
54 161 0.96
55 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTTGTAAAATTACT
Found at i:61994832 original size:27 final size:27
Alignment explanation
Indices: 61994691--61994828 Score: 188
Period size: 27 Copynumber: 5.1 Consensus size: 27
61994681 CGATTTACAA
61994691 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
61994718 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
61994745 AATTACGGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
61994772 AAATACCGAAACACCCCTGTATGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
61994799 AATTACCGAGATACCCTTGTGGGGTA-
1 AATTACCGAAATACCCTTGTAGGGTAG
61994825 AATT
1 AATT
61994829 TACCATTTTA
Statistics
Matches: 95, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 4 0.04
27 91 0.96
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:61995451 original size:27 final size:27
Alignment explanation
Indices: 61995421--61995528 Score: 94
Period size: 27 Copynumber: 4.0 Consensus size: 27
61995411 ATTCTGTTAA
* *
61995421 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
61995448 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * * *
61995475 GAGGCTCTACCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * **
61995502 GTGACTCTATCACAATATCTG-TTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
61995528 G
1 G
61995529 CAGCCATGCT
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
26 12 0.18
27 49 0.73
28 6 0.09
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:61995655 original size:6 final size:6
Alignment explanation
Indices: 61995646--61995758 Score: 81
Period size: 6 Copynumber: 18.3 Consensus size: 6
61995636 TTGCATTCAC
* *
61995646 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
61995696 ATTCTG ATTCTG ATGCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
61995745 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
61995759 AATGTTTCTT
Statistics
Matches: 85, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
5 6 0.07
6 66 0.78
7 9 0.11
8 4 0.05
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:61995677 original size:25 final size:25
Alignment explanation
Indices: 61995646--61995737 Score: 148
Period size: 25 Copynumber: 3.7 Consensus size: 25
61995636 TTGCATTCAC
61995646 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
* *
61995671 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTG
* *
61995696 ATTCTGATTCTGATGCTGTCACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
61995721 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
61995738 CATTTTGATT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTG
Found at i:61996226 original size:22 final size:22
Alignment explanation
Indices: 61996201--61996246 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
61996191 GCTTTTGCAA
61996201 GTGCCAAGATTTTTACAAAGTT
1 GTGCCAAGATTTTTACAAAGTT
61996223 GTGCCAAGATTTTTACAAAGTT
1 GTGCCAAGATTTTTACAAAGTT
61996245 GT
1 GT
61996247 TAAGAATGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (22 bp):
GTGCCAAGATTTTTACAAAGTT
Found at i:61997772 original size:27 final size:27
Alignment explanation
Indices: 61997742--61997883 Score: 194
Period size: 27 Copynumber: 5.3 Consensus size: 27
61997732 TTAGTTTACC
*
61997742 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
61997769 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
61997796 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
61997823 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
61997850 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
61997877 AAATTAC
1 AAATTAC
61997884 TGAAATACTC
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:61997818 original size:54 final size:54
Alignment explanation
Indices: 61997750--61997964 Score: 209
Period size: 54 Copynumber: 4.0 Consensus size: 54
61997740 CCAAATCACC
* * *
61997750 AAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTGTAAAATTACT
1 AAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACT
* * * * *
61997804 AAAATACCCTTGGTTTATAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACC
1 AAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGA-TTTGTAAAATTACT
* * ** * * **
61997858 AAAATACCCCTAATTTGTGAAATTACTGAAATACTCTCGACCTGTAAAATTACT
1 AAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACT
* * * * *
61997912 GAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTATAGAATTAC
1 AAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTAC
61997965 CGTTTTACCC
Statistics
Matches: 126, Mismatches: 32, Indels: 6
0.77 0.20 0.04
Matches are distributed among these distances:
53 4 0.03
54 121 0.96
55 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
AAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACT
Found at i:61997875 original size:81 final size:81
Alignment explanation
Indices: 61997742--61997891 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
61997732 TTAGTTTACC
* * **
61997742 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTGTAAAATTACTAAA
1 AAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAATTTGTAAAATTACTAAA
61997807 ATACCCTTGGTTTATA
66 ATACCCTTGGTTTATA
* * * *
61997823 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAA
1 AAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAATTTGTAAAATTACTAAA
61997888 ATAC
66 ATAC
61997892 TCTCGACCTG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAATTTGTAAAATTACTAAA
ATACCCTTGGTTTATA
Found at i:61997906 original size:81 final size:81
Alignment explanation
Indices: 61997742--61997947 Score: 225
Period size: 81 Copynumber: 2.5 Consensus size: 81
61997732 TTAGTTTACC
* * ** **
61997742 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
* ***
61997807 ATACCCTTGGTTTATA
66 ATACCCTCGACCTATA
* *
61997823 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
* *
61997888 ATACTCTCGACCTGTA
66 ATACCCTCGACCTATA
** * * *
61997904 AAATTACTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCC
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCC
61997948 TTGATTTATA
Statistics
Matches: 105, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 5 0.05
81 100 0.95
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
ATACCCTCGACCTATA
Found at i:61997946 original size:27 final size:27
Alignment explanation
Indices: 61997742--61997965 Score: 184
Period size: 27 Copynumber: 8.3 Consensus size: 27
61997732 TTAGTTTACC
* *
61997742 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
61997769 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
61997796 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
61997823 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
61997850 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** * **
61997877 AAATTACTGAAATACTCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** *
61997904 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
61997931 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
61997958 GAATTACC
1 AAATTACC
61997966 GTTTTACCCT
Statistics
Matches: 164, Mismatches: 29, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
27 162 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:61998000 original size:27 final size:27
Alignment explanation
Indices: 61997767--61998002 Score: 98
Period size: 27 Copynumber: 8.7 Consensus size: 27
61997757 CCCTGGTTTG
* * * * * *
61997767 TAAAATTACCAAAATACCATTGGTTTG
1 TAAAATTACCGAAGTACCCTCGATTTA
** * * *
61997794 TAAAATTACTAAAATACCCTTGGTTTA
1 TAAAATTACCGAAGTACCCTCGATTTA
* * * *
61997821 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCGAAGTACCCTCGA-TTTA
* * * *
61997848 TAAAATTACCAAAATACCC-CTAATTTG
1 TAAAATTACCGAAGTACCCTC-GATTTA
* * * * ** *
61997875 TGAAATTACTGAAATACTCTCGACCTG
1 TAAAATTACCGAAGTACCCTCGATTTA
* * * *
61997902 TAAAATTACTGAAATACCCTCGACTTG
1 TAAAATTACCGAAGTACCCTCGATTTA
* *
61997929 TAAAATTACCAAAGTACCCTTGATTTA
1 TAAAATTACCGAAGTACCCTCGATTTA
* ***
61997956 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCGAAGTACCCTCGATTTA
* *
61997983 CAAAATTATCGAAGTACCCT
1 TAAAATTACCGAAGTACCCT
61998003 TATAGGGTAG
Statistics
Matches: 169, Mismatches: 37, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
27 167 0.99
28 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TAAAATTACCGAAGTACCCTCGATTTA
Found at i:61998118 original size:27 final size:27
Alignment explanation
Indices: 61997986--61998119 Score: 151
Period size: 27 Copynumber: 5.0 Consensus size: 27
61997976 CGATTTACAA
* * *
61997986 AATTATCGAAGTACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
61998013 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
61998040 AATTATCGAAATACCCTTGCAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
61998067 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
61998094 AATTACCGAGATACCCTTGTGGGGTA
1 AATTACCGAAATACCCTTGTAGGGTA
61998120 TCATTTTGCC
Statistics
Matches: 86, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:61998551 original size:22 final size:22
Alignment explanation
Indices: 61998526--61998573 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
61998516 TGGCTTTGCA
61998526 CCAACCT-ACATATGGCTCTGTG
1 CCAACCTGA-ATATGGCTCTGTG
* *
61998548 CCAACCTGATTATGGCTGTGTG
1 CCAACCTGAATATGGCTCTGTG
61998570 CCAA
1 CCAA
61998574 ACGTATTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (22 bp):
CCAACCTGAATATGGCTCTGTG
Found at i:61998762 original size:27 final size:26
Alignment explanation
Indices: 61998732--61998839 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
61998722 ATTCTGTTAA
* *
61998732 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
61998759 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
* *
61998786 GAGGCTCTACCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
61998813 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
61998839 G
1 G
61998840 CAGTCATGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.20
27 49 0.70
28 7 0.10
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:61998966 original size:6 final size:6
Alignment explanation
Indices: 61998957--61999060 Score: 79
Period size: 6 Copynumber: 16.8 Consensus size: 6
61998947 TTGCATTCAC
* * *
61998957 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
61999007 ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
61999056 ATTCT
1 ATTCT
61999061 AGTTCTAATA
Statistics
Matches: 77, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.05
6 62 0.81
7 8 0.10
8 3 0.04
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:61998988 original size:25 final size:25
Alignment explanation
Indices: 61998957--61999048 Score: 157
Period size: 25 Copynumber: 3.7 Consensus size: 25
61998947 TTGCATTCAC
*
61998957 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
* *
61998982 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTG
61999007 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
61999032 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
61999049 CATTTTGATT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:62002876 original size:19 final size:19
Alignment explanation
Indices: 62002854--62002891 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
62002844 ATTTTCAGGC
62002854 CATATTTAGATTGATTCTT
1 CATATTTAGATTGATTCTT
62002873 CATATTTAGATTGATTCTT
1 CATATTTAGATTGATTCTT
62002892 AGTTGTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53
Consensus pattern (19 bp):
CATATTTAGATTGATTCTT
Found at i:62006576 original size:48 final size:47
Alignment explanation
Indices: 62006515--62006645 Score: 147
Period size: 47 Copynumber: 2.8 Consensus size: 47
62006505 ATGCAAGTGG
* * * *
62006515 TACCTTGACTTGGCTAAGGGCCATGTTATAGGTATTTCAGAGAGGAGT
1 TACCTTGATTTGGCTAAGGGCCATGGTATAGGTA-CTCAGAGAGAAGT
* * * * *
62006563 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTAAGGGCCATGGTATAGGTACTCAGAGAGAAGT
*
62006610 TACCTTGATTTGGCTATA-GGTCATGGTATAGGTACT
1 TACCTTGATTTGGCTA-AGGGCCATGGTATAGGTACT
62006646 TATCAATTGT
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
47 40 0.57
48 30 0.43
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTAAGGGCCATGGTATAGGTACTCAGAGAGAAGT
Found at i:62009041 original size:17 final size:17
Alignment explanation
Indices: 62009021--62009053 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
62009011 AAAATAATAG
62009021 AATAAGTAA-AAAAGAAT
1 AATAA-TAATAAAAGAAT
62009038 AATAATAATAAAAGAA
1 AATAATAATAAAAGAA
62009054 ACTGTAACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (17 bp):
AATAATAATAAAAGAAT
Found at i:62015099 original size:38 final size:37
Alignment explanation
Indices: 62015043--62015115 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 37
62015033 CCAAAATCTC
*
62015043 ATCGAATTCATCAAATGGTAAAAGCATCAAGTCAGCAG
1 ATCGAACTCATCAAATGGTAAAAGCATCAA-TCAGCAG
*
62015081 ATCGAACTCATCATATGGTAAAAGCATCAATCAGC
1 ATCGAACTCATCAAATGGTAAAAGCATCAATCAGC
62015116 TGGAAAATAG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
37 5 0.15
38 28 0.85
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.22
Consensus pattern (37 bp):
ATCGAACTCATCAAATGGTAAAAGCATCAATCAGCAG
Found at i:62020636 original size:50 final size:51
Alignment explanation
Indices: 62020561--62020660 Score: 148
Period size: 50 Copynumber: 2.0 Consensus size: 51
62020551 CTCCTTGAAT
* *
62020561 CGCTCCCATGCCTCGTATAAAGATTCTTCATCAAGTTGCTGAAAT-AAAGC
1 CGCTCCCATGCCTCATATAAAGATTCTTCATCAAGCTGCTGAAATGAAAGC
* * *
62020611 CGCTCGCATTCCTCATATAAAGATTCTTCGTCAAGCTGCTGAAATGAAAG
1 CGCTCCCATGCCTCATATAAAGATTCTTCATCAAGCTGCTGAAATGAAAG
62020661 GATTTCATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 40 0.91
51 4 0.09
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (51 bp):
CGCTCCCATGCCTCATATAAAGATTCTTCATCAAGCTGCTGAAATGAAAGC
Found at i:62023279 original size:22 final size:23
Alignment explanation
Indices: 62023235--62023281 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
62023225 AATGAACAAC
62023235 AAACTCTATTGAACTGAAACAGT
1 AAACTCTATTGAACTGAAACAGT
*
62023258 AAACTCTATTGAGCT-AAACAGT
1 AAACTCTATTGAACTGAAACAGT
62023280 AA
1 AA
62023282 GTTCATACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.45, C:0.17, G:0.13, T:0.26
Consensus pattern (23 bp):
AAACTCTATTGAACTGAAACAGT
Found at i:62023303 original size:24 final size:24
Alignment explanation
Indices: 62023273--62023345 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 24
62023263 CTATTGAGCT
*
62023273 AAACAGTAAGTTCATACGAGCTGA
1 AAACAGTAAGCTCATACGAGCTGA
* *
62023297 AAACAGTAAGCTCTTATGAGCTGA
1 AAACAGTAAGCTCATACGAGCTGA
* * *
62023321 TATATCGGTAAGCTCTTACGAGCTG
1 -A-AACAGTAAGCTCATACGAGCTG
62023346 TGGTGAGTCC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 21 0.51
25 1 0.02
26 19 0.46
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (24 bp):
AAACAGTAAGCTCATACGAGCTGA
Found at i:62023831 original size:27 final size:27
Alignment explanation
Indices: 62023801--62023893 Score: 89
Period size: 27 Copynumber: 3.4 Consensus size: 27
62023791 TTCCTCTTTC
*
62023801 CTTGATCTAATCTCAATGTCAACTTAT
1 CTTGATCTAATCTCAATATCAACTTAT
* * *
62023828 CTTGATCTAAATAT-AATATCAAAATTTT
1 CTTGATCT-AATCTCAATATC-AACTTAT
* * *
62023856 CCCTGATCTAAGCTCAATCTCAACTTAT
1 -CTTGATCTAATCTCAATATCAACTTAT
62023884 CTTGATCTAA
1 CTTGATCTAA
62023894 ATATAATATC
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
27 22 0.43
28 17 0.33
29 12 0.24
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (27 bp):
CTTGATCTAATCTCAATATCAACTTAT
Found at i:62023865 original size:56 final size:56
Alignment explanation
Indices: 62023797--62023908 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 56
62023787 ATTTTTCCTC
* * *
62023797 TTTCCTTGATCTAATCTCAATGTCAACTTATCTTGATCTAAATATAATATCAAAAT
1 TTTCCCTGATCTAAGCTCAATCTCAACTTATCTTGATCTAAATATAATATCAAAAT
62023853 TTTCCCTGATCTAAGCTCAATCTCAACTTATCTTGATCTAAATATAATATCAAAAT
1 TTTCCCTGATCTAAGCTCAATCTCAACTTATCTTGATCTAAATATAATATCAAAAT
62023909 CAGCATAGTA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (56 bp):
TTTCCCTGATCTAAGCTCAATCTCAACTTATCTTGATCTAAATATAATATCAAAAT
Found at i:62023905 original size:27 final size:27
Alignment explanation
Indices: 62023801--62023905 Score: 88
Period size: 27 Copynumber: 3.8 Consensus size: 27
62023791 TTCCTCTTTC
* *
62023801 CTTGATCT-AATCTCAATGTCAACTTAT
1 CTTGATCTAAATAT-AATATCAACTTAT
* *
62023828 CTTGATCTAAATATAATATCAAAATTTT
1 CTTGATCTAAATATAATATC-AACTTAT
* * * *
62023856 CCCTGATCTAAGCT-CAATCTCAACTTAT
1 -CTTGATCTAA-ATATAATATCAACTTAT
62023884 CTTGATCTAAATATAATATCAA
1 CTTGATCTAAATATAATATCAA
62023906 AATCAGCATA
Statistics
Matches: 59, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
26 1 0.02
27 29 0.49
28 14 0.24
29 14 0.24
30 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.06, T:0.38
Consensus pattern (27 bp):
CTTGATCTAAATATAATATCAACTTAT
Found at i:62029205 original size:35 final size:34
Alignment explanation
Indices: 62029133--62029205 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
62029123 TTCCATGCTA
* * * *
62029133 AATTCAATTCGGCAATGTAGTTATACATATATAC
1 AATTCAATTCAGCAATGTAATAATAAATATATAC
* *
62029167 AATTCAATTCAGCTATGTACATAATAAATATATTC
1 AATTCAATTCAGCAATGTA-ATAATAAATATATAC
62029202 AATT
1 AATT
62029206 TAACATCATT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 17 0.53
35 15 0.47
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (34 bp):
AATTCAATTCAGCAATGTAATAATAAATATATAC
Found at i:62033199 original size:16 final size:16
Alignment explanation
Indices: 62033178--62033211 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
62033168 TTAGCACGAT
62033178 TGGTACATAAAACTTG
1 TGGTACATAAAACTTG
*
62033194 TGGTACATAAAATTTG
1 TGGTACATAAAACTTG
62033210 TG
1 TG
62033212 ATTTTTTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (16 bp):
TGGTACATAAAACTTG
Found at i:62037005 original size:28 final size:27
Alignment explanation
Indices: 62036920--62037009 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
62036910 GTGACAGAGT
*
62036920 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* * *
62036949 CAACAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
62036976 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
62037004 CACCAG
1 CACCAG
62037010 GACACTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 23 0.44
29 6 0.12
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:62037151 original size:26 final size:28
Alignment explanation
Indices: 62037115--62037177 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
62037105 AAATTAACCC
*
62037115 TAGGGGTATAA-GGTCATTTTG-ATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
62037141 TAGGGGTATAATGGTAATTTTGCATAGA
1 TAGGGGTATAATGGTAATTTTGCATACA
62037169 TAGGGGTAT
1 TAGGGGTAT
62037178 TCTAGTACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 11 0.33
27 9 0.27
28 13 0.39
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:62044839 original size:55 final size:56
Alignment explanation
Indices: 62044774--62044888 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
62044764 AGCATGGCTG
* *
62044774 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * * *
62044830 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAATAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
62044885 CCAG
1 CCAG
62044889 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.55
56 22 0.43
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:62044851 original size:27 final size:27
Alignment explanation
Indices: 62044799--62044888 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
62044789 GTGACAGAGT
62044799 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
62044828 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
62044855 CACCAGAATAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
62044883 CACCAG
1 CACCAG
62044889 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:62044884 original size:28 final size:27
Alignment explanation
Indices: 62044799--62044888 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
62044789 GTGACAGAGT
*
62044799 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* *
62044828 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
62044855 CACCAGAATAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
62044883 CACCAG
1 CACCAG
62044889 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:62045041 original size:28 final size:28
Alignment explanation
Indices: 62044994--62045058 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
62044984 AAATTAACCC
*
62044994 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
62045022 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
62045050 TAGGGGTAT
1 TAGGGGTAT
62045059 TCTAGCACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:62046056 original size:161 final size:161
Alignment explanation
Indices: 62045791--62046113 Score: 628
Period size: 161 Copynumber: 2.0 Consensus size: 161
62045781 ACCTTTAAAC
62045791 GACGGTAAAACTTGAATCTAGAAGCTTTGAAGTTTCGGCTACAAGTCCCTAACTCTATAGTAGTT
1 GACGGTAAAACTTGAATCTAGAAGCTTTGAAGTTTCGGCTACAAGTCCCTAACTCTATAGTAGTT
62045856 TCGGCTTTTCTAGGTGATATAGAAAATAATGATTTGAGGCTATAACCCTGGGTAATGTTGTCGAC
66 TCGGCTTTTCTAGGTGATATAGAAAATAATGATTTGAGGCTATAACCCTGGGTAATGTTGTCGAC
* *
62045921 AGATTCTAGGGGTTTAGAGTAGAGGAATGTT
131 AGATGCTAGGGGTTTAGAGGAGAGGAATGTT
62045952 GACGGTAAAACTTGAATCTAGAAGCTTTGAAGTTTCGGCTACAAGTCCCTAACTCTATAGTAGTT
1 GACGGTAAAACTTGAATCTAGAAGCTTTGAAGTTTCGGCTACAAGTCCCTAACTCTATAGTAGTT
62046017 TCGGCTTTTCTAGGTGATATAGAAAATAATGATTTGAGGCTATAACCCTGGGTAATGTTGTCGAC
66 TCGGCTTTTCTAGGTGATATAGAAAATAATGATTTGAGGCTATAACCCTGGGTAATGTTGTCGAC
62046082 AGATGCTAGGGGTTTAGAGGAGAGGAATGTT
131 AGATGCTAGGGGTTTAGAGGAGAGGAATGTT
62046113 G
1 G
62046114 GTCAAAAAGG
Statistics
Matches: 160, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
161 160 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.32
Consensus pattern (161 bp):
GACGGTAAAACTTGAATCTAGAAGCTTTGAAGTTTCGGCTACAAGTCCCTAACTCTATAGTAGTT
TCGGCTTTTCTAGGTGATATAGAAAATAATGATTTGAGGCTATAACCCTGGGTAATGTTGTCGAC
AGATGCTAGGGGTTTAGAGGAGAGGAATGTT
Found at i:62062350 original size:21 final size:21
Alignment explanation
Indices: 62062324--62062364 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
62062314 GGTTTTCATA
62062324 CTTAAAGTAGTAATTTATGCT
1 CTTAAAGTAGTAATTTATGCT
62062345 CTTAAAGTAGTAATTTATGC
1 CTTAAAGTAGTAATTTATGC
62062365 CTATATAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (21 bp):
CTTAAAGTAGTAATTTATGCT
Found at i:62065147 original size:13 final size:13
Alignment explanation
Indices: 62065129--62065155 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
62065119 GCTCGGCAGG
62065129 GACACGCCCGTGT
1 GACACGCCCGTGT
62065142 GACACGCCCGTGT
1 GACACGCCCGTGT
62065155 G
1 G
62065156 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:62066569 original size:33 final size:33
Alignment explanation
Indices: 62066491--62066573 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
62066481 CACTGCCACG
* * *
62066491 GCCTTGCCATGGTCTTATGCTTATAGTGCCATA
1 GCCTAGCCATGGTCTTATGCTTAGAATGCCATA
* * **
62066524 ACCCAGTTATGGTCTTAT-CATTAGAATGCCATA
1 GCCTAGCCATGGTCTTATGC-TTAGAATGCCATA
62066557 GCCTAGCCATGGTCTTA
1 GCCTAGCCATGGTCTTA
62066574 CATATATATA
Statistics
Matches: 38, Mismatches: 11, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
32 1 0.03
33 37 0.97
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (33 bp):
GCCTAGCCATGGTCTTATGCTTAGAATGCCATA
Found at i:62066881 original size:13 final size:13
Alignment explanation
Indices: 62066863--62066887 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62066853 AAGTTTAGGG
62066863 GCATTTTGGTAAA
1 GCATTTTGGTAAA
62066876 GCATTTTGGTAA
1 GCATTTTGGTAA
62066888 CTTTTTATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (13 bp):
GCATTTTGGTAAA
Found at i:62069069 original size:16 final size:16
Alignment explanation
Indices: 62069041--62069078 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
62069031 TTTTAAATTT
62069041 TTTTATAATTTATATA
1 TTTTATAATTTATATA
62069057 TTTTA-AATATTATATA
1 TTTTATAAT-TTATATA
62069073 TTTTAT
1 TTTTAT
62069079 TTATTTTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 3 0.15
16 17 0.85
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTTATAATTTATATA
Found at i:62069132 original size:12 final size:12
Alignment explanation
Indices: 62069115--62069276 Score: 71
Period size: 12 Copynumber: 13.7 Consensus size: 12
62069105 GTATGTAAAA
62069115 ATTATTATATAT
1 ATTATTATATAT
62069127 ATTATT-T-T-T
1 ATTATTATATAT
62069136 A-T-TT-T-TAT
1 ATTATTATATAT
62069144 ATTATT-TATGAT
1 ATTATTATAT-AT
*
62069156 ATTATT-TACAT
1 ATTATTATATAT
*
62069167 TTTATTATATAT
1 ATTATTATATAT
* *
62069179 TTTGATTTATACAT
1 ATT-A-TTATATAT
*
62069193 TTTATTATATAT
1 ATTATTATATAT
62069205 CATTTTATTATATAT
1 -A--TTATTATATAT
62069220 ATTATTCAT-TAT
1 ATTATT-ATATAT
62069232 ATT-TT-T-TAT
1 ATTATTATATAT
*
62069241 TTTATTATATATT
1 ATTATTATATA-T
*
62069254 ATATAATTATTTATT
1 AT-T-ATTATATA-T
62069269 ATTATTAT
1 ATTATTAT
62069277 TATGTATAAT
Statistics
Matches: 123, Mismatches: 9, Indels: 35
0.74 0.05 0.21
Matches are distributed among these distances:
7 4 0.03
8 3 0.02
9 9 0.07
10 6 0.05
11 12 0.10
12 43 0.35
13 11 0.09
14 13 0.11
15 22 0.18
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (12 bp):
ATTATTATATAT
Found at i:62069146 original size:26 final size:26
Alignment explanation
Indices: 62069117--62069276 Score: 73
Period size: 26 Copynumber: 6.0 Consensus size: 26
62069107 ATGTAAAAAT
62069117 TATTATATATATTATTTTTATTTTTA
1 TATTATATATATTATTTTTATTTTTA
* **
62069143 TATTATTTATGA-TATTATTTACATTT-
1 TATTATATAT-ATTATT-TTTATTTTTA
* * **
62069169 TATTATATATTTTGATTTATACATTT-
1 TATTATATATATT-ATTTTTATTTTTA
*
62069195 TATTATATATCATT-TTATTATATATATTA
1 TATTATATAT-ATTATT-TT-TAT-TTTTA
* * *
62069224 TTCATTATATTTTTTA-TTTTA-TTATA
1 -T-ATTATATATATTATTTTTATTTTTA
*
62069250 TATTATATA-ATTATTTATTATTATTA
1 TATTATATATATTATTT-TTATTTTTA
62069276 T
1 T
62069277 TATGTATAAT
Statistics
Matches: 100, Mismatches: 19, Indels: 30
0.67 0.13 0.20
Matches are distributed among these distances:
23 3 0.03
24 9 0.09
25 6 0.06
26 49 0.49
27 15 0.15
28 4 0.04
29 2 0.02
30 4 0.04
31 8 0.08
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.64
Consensus pattern (26 bp):
TATTATATATATTATTTTTATTTTTA
Found at i:62069174 original size:14 final size:14
Alignment explanation
Indices: 62069155--62069233 Score: 83
Period size: 14 Copynumber: 5.6 Consensus size: 14
62069145 TTATTTATGA
*
62069155 TATTATTTACATTT
1 TATTATATACATTT
62069169 TATTATAT--ATTT
1 TATTATATACATTT
62069181 TGATT-TATACATTT
1 T-ATTATATACATTT
62069195 TATTATATATCATTT
1 TATTATATA-CATTT
*
62069210 TATTATATATATTAT
1 TATTATATACATT-T
62069225 TCATTATAT
1 T-ATTATAT
62069234 TTTTTATTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
12 8 0.14
13 6 0.11
14 19 0.34
15 16 0.29
16 7 0.12
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (14 bp):
TATTATATACATTT
Found at i:62069239 original size:43 final size:42
Alignment explanation
Indices: 62069155--62069270 Score: 102
Period size: 43 Copynumber: 2.9 Consensus size: 42
62069145 TTATTTATGA
*
62069155 TATTATT-TACATTTTA-T-TATATATT-TTGATTTATACATTT
1 TATTATTAT-CATTTTATTATATATATTATTCA-TTATACATTT
**
62069195 TATTATATATCATTTTATTATATATATTATTCATTATATTTTT
1 TATTAT-TATCATTTTATTATATATATTATTCATTATACATTT
* * *
62069238 TATT-TTATTA-TATATTATATA-ATTATTTATTAT
1 TATTATTATCATTTTATTATATATATTATTCATTAT
62069271 TATTATTATG
Statistics
Matches: 65, Mismatches: 6, Indels: 11
0.79 0.07 0.13
Matches are distributed among these distances:
39 11 0.17
40 16 0.25
41 12 0.18
42 3 0.05
43 20 0.31
44 3 0.05
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (42 bp):
TATTATTATCATTTTATTATATATATTATTCATTATACATTT
Found at i:62069246 original size:24 final size:26
Alignment explanation
Indices: 62069115--62069284 Score: 108
Period size: 28 Copynumber: 6.5 Consensus size: 26
62069105 GTATGTAAAA
62069115 ATTATTA-TATATATTATTT-TTATTT
1 ATTATTATTATATATTATTTATTA-TT
* *
62069140 TTATATTATTTATGATATTATTTA-CATT
1 AT-TATTA-TTAT-ATATTATTTATTATT
* *
62069168 -TTATTA-TATATTTTGATTTA-TA-C
1 ATTATTATTATATATT-ATTTATTATT
*
62069191 ATT-TTATTATATATCATTTTATTA-T
1 ATTATTATTATATATTA-TTTATTATT
*
62069216 ATATATTATTCATTATATTTTTTATT-TT
1 AT-TATTATT-A-TATATTATTTATTATT
62069244 ATTATATATTATATAATTATTTATTATT
1 ATTAT-TATTATAT-ATTATTTATTATT
62069272 ATTATTATGTATA
1 ATTATTAT-TATA
62069285 ATTTTAAAAA
Statistics
Matches: 115, Mismatches: 11, Indels: 35
0.71 0.07 0.22
Matches are distributed among these distances:
23 8 0.07
24 21 0.18
25 5 0.04
26 14 0.12
27 22 0.19
28 30 0.26
29 15 0.13
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (26 bp):
ATTATTATTATATATTATTTATTATT
Found at i:62069247 original size:33 final size:31
Alignment explanation
Indices: 62069116--62069284 Score: 111
Period size: 29 Copynumber: 5.4 Consensus size: 31
62069106 TATGTAAAAA
*
62069116 TTATTATATATATTATT-TT-TATTTTTATA
1 TTATTATATATATTATTATTATATTTTTATT
* *
62069145 TTATT-TATGATATTATTTACATTTTATTATATATT
1 TTATTATAT-ATATTA-TT--ATTATATT-TTTATT
* * *
62069180 TTGATT-TATACATT-TTATTATA-TATCATT
1 TT-ATTATATATATTATTATTATATTTTTATT
62069209 TTATTATATATATTATTCATTATATTTTTTATT
1 TTATTATATATATTATT-ATTATA-TTTTTATT
* *
62069242 TTATTATATAT-TATATAATTAT-TTATTATT
1 TTATTATATATAT-TATTATTATATTTTTATT
*
62069272 ATTATTATGTATA
1 -TTATTATATATA
62069285 ATTTTAAAAA
Statistics
Matches: 111, Mismatches: 13, Indels: 29
0.73 0.08 0.19
Matches are distributed among these distances:
28 6 0.05
29 23 0.21
30 12 0.11
31 21 0.19
32 6 0.05
33 23 0.21
34 4 0.04
35 10 0.09
36 6 0.05
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (31 bp):
TTATTATATATATTATTATTATATTTTTATT
Found at i:62069274 original size:76 final size:77
Alignment explanation
Indices: 62069115--62069276 Score: 183
Period size: 76 Copynumber: 2.1 Consensus size: 77
62069105 GTATGTAAAA
* * *
62069115 ATTATTA-TATATATTATTTTTATTTTTATATTATTTATGATATTATTTACATTTTATTATATAT
1 ATTATTATTATATATCATTTTTATTTATATATTATTCATGATATTATTTACATTTTATTATATAT
*
62069179 TTTGATTTATAC
66 TTTGAATTATAC
* *
62069191 ATT-TTATTATATATCA-TTTTATTATATATATTATTCATTATATT-TTT-TATTTTATTATATA
1 ATTATTATTATATATCATTTTTATT-TATATATTATTCATGATATTATTTACATTTTATTATATA
**
62069252 TTATAT-AATTATTT
65 TT-T-TGAATTATAC
62069266 ATTATTATTAT
1 ATTATTATTAT
62069277 TATGTATAAT
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
74 15 0.21
75 22 0.30
76 36 0.49
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (77 bp):
ATTATTATTATATATCATTTTTATTTATATATTATTCATGATATTATTTACATTTTATTATATAT
TTTGAATTATAC
Found at i:62069685 original size:18 final size:18
Alignment explanation
Indices: 62069662--62069696 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
62069652 ATCTCATAAA
*
62069662 TTATTTGTTATTTTTATG
1 TTATTTATTATTTTTATG
*
62069680 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
62069697 ATATTCGCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:62073362 original size:14 final size:15
Alignment explanation
Indices: 62073343--62073383 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
62073333 AAATTAACAC
*
62073343 ACAGAGAGAGAGAG-
1 ACAGAGAAAGAGAGT
62073357 ACAGAGAAAGAGAGT
1 ACAGAGAAAGAGAGT
62073372 A-AGAGAAAGAGA
1 ACAGAGAAAGAGA
62073384 AAACCTGGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 24 0.96
15 1 0.04
ACGTcount: A:0.56, C:0.05, G:0.37, T:0.02
Consensus pattern (15 bp):
ACAGAGAAAGAGAGT
Found at i:62080613 original size:44 final size:44
Alignment explanation
Indices: 62080554--62080859 Score: 258
Period size: 44 Copynumber: 7.1 Consensus size: 44
62080544 TCAAAGATGA
* * *
62080554 CAGATTTGGCATCTCTGTATTAACAGAGGGCAAATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAAATCGAAGATAG
*
62080598 CAGATTTGGCGTCTCTGTATTGATAGAGAGCAAATCGAAGATA-
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAAATCGAAGATAG
* * * * *
62080641 AAGATTTGGCGTCTCTGTATTGACAGAGGGTAGATCGAAGACAG
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAAATCGAAGATAG
* * *
62080685 CAGATTTGGTGTCTCTGTATTGACAGAAAGCAGATCGAAGAT-G
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAAATCGAAGATAG
* * ** *
62080728 ATAGATTTGGCGTCTCTGTATTAGA-AGGAGAGCAGATAAAAAATAG
1 -CAGATTTGGCGTCTCTGTATT-GACA-GAGAGCAAATCGAAGATAG
* * * * *
62080774 CAGATATGACAT-TCGTGTA-T--C-GA-AGCAGATCAAAGAT-G
1 CAGATTTGGCGTCTC-TGTATTGACAGAGAGCAAATCGAAGATAG
* * *
62080812 ACAGATTTGGTGTCTCTGTA-T-ACGGAGAGCAGATCGAAGATAG
1 -CAGATTTGGCGTCTCTGTATTGACAGAGAGCAAATCGAAGATAG
62080855 CAGAT
1 CAGAT
62080860 CTGATATTCG
Statistics
Matches: 216, Mismatches: 33, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
38 1 0.00
39 25 0.12
40 5 0.02
41 2 0.01
42 18 0.08
43 39 0.18
44 98 0.45
45 27 0.12
46 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGACAGAGAGCAAATCGAAGATAG
Found at i:62080701 original size:87 final size:88
Alignment explanation
Indices: 62080536--62080750 Score: 306
Period size: 87 Copynumber: 2.5 Consensus size: 88
62080526 CCTTGAGACC
* * * * *
62080536 AAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAACAGAGGGCAAATCGAAGATAGCAG
1 AAAGCAAATCGAAGATGAAAGATTTGGCGTCTCTGTATTAACAGAGGGCAAATCGAAGACAGCAG
*
62080601 ATTTGGCGTCTCTGTATTGATAG
66 ATTTGGCGTCTCTGTATTGACAG
* * * *
62080624 AGAGCAAATCGAAGAT-AAAGATTTGGCGTCTCTGTATTGACAGAGGGTAGATCGAAGACAGCAG
1 AAAGCAAATCGAAGATGAAAGATTTGGCGTCTCTGTATTAACAGAGGGCAAATCGAAGACAGCAG
*
62080688 ATTTGGTGTCTCTGTATTGACAG
66 ATTTGGCGTCTCTGTATTGACAG
* *
62080711 AAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTA
1 AAAGCAAATCGAAGATGAAAGATTTGGCGTCTCTGTATTA
62080751 GAAGGAGAGC
Statistics
Matches: 111, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
87 77 0.69
88 34 0.31
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.27
Consensus pattern (88 bp):
AAAGCAAATCGAAGATGAAAGATTTGGCGTCTCTGTATTAACAGAGGGCAAATCGAAGACAGCAG
ATTTGGCGTCTCTGTATTGACAG
Found at i:62080927 original size:165 final size:167
Alignment explanation
Indices: 62080712--62081087 Score: 567
Period size: 165 Copynumber: 2.3 Consensus size: 167
62080702 TATTGACAGA
* * *
62080712 AAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGAAGGAGAGCAGATAAAAAATAGCAG
1 AAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGAAGAGCAGATAAAAAATAGCAG
**
62080777 ATATGACATTCGTGTATCGAAGCAGATCAAAGATGACAGATTTGGTGTCTCTGTA-T-ACGGAGA
66 ATATGACATTCGTGTATCGAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAACGGAGA
*
62080840 GCAGATCGAAGATAGCAGATCTGATATTCGTGTATTG
131 GCAGATCGAAGATAGCAGATCTGACATTCGTGTATTG
* ** *
62080877 AAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGAAGAGCAGATCGAAAATAGTAG
1 AAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGAAGAGCAGATAAAAAATAGCAG
* * *
62080942 ATCTGACATTTGTGTATCGAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGATGGAG
66 ATATGACATTCGTGTATCGAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTA-ACGGAG
* * *
62081007 AGTAGATCGAATATAGTAGATCTGACATTCGTGTATTG
130 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTATTG
* *
62081045 AAGCATATCGAAGATGACAGATTTGGTGTCTCTGTATTAGACG
1 AAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACG
62081088 GGGAGTGGAT
Statistics
Matches: 189, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
165 109 0.58
166 1 0.01
168 79 0.42
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (167 bp):
AAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGAAGAGCAGATAAAAAATAGCAG
ATATGACATTCGTGTATCGAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAACGGAGA
GCAGATCGAAGATAGCAGATCTGACATTCGTGTATTG
Found at i:62080958 original size:45 final size:44
Alignment explanation
Indices: 62080909--62081043 Score: 104
Period size: 45 Copynumber: 3.1 Consensus size: 44
62080899 TTGGCGTCTC
62080909 TGTATTAGACGAAGAGCAGATCGAAAATAGTAGATCTGACATTTG
1 TGTATTAGACG-AGAGCAGATCGAAAATAGTAGATCTGACATTTG
* * * * *
62080954 TGTA-T---CGA-AGCAGATC-AAAGAT-GACAGATTTGGCATCTC
1 TGTATTAGACGAGAGCAGATCGAAA-ATAG-TAGATCTGACATTTG
* * * *
62080993 TGTATTAGATGGAGAGTAGATCGAATATAGTAGATCTGACATTCG
1 TGTATTAGA-CGAGAGCAGATCGAAAATAGTAGATCTGACATTTG
62081038 TGTATT
1 TGTATT
62081044 GAAGCATATC
Statistics
Matches: 66, Mismatches: 14, Indels: 20
0.66 0.14 0.20
Matches are distributed among these distances:
38 4 0.06
39 24 0.36
40 2 0.03
41 2 0.03
44 3 0.05
45 28 0.42
46 3 0.05
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (44 bp):
TGTATTAGACGAGAGCAGATCGAAAATAGTAGATCTGACATTTG
Found at i:62080997 original size:39 final size:39
Alignment explanation
Indices: 62080789--62080997 Score: 156
Period size: 39 Copynumber: 5.1 Consensus size: 39
62080779 ATGACATTCG
**
62080789 TGTATCGAAGCAGATCAAAGATGACAGATTTGGTGTCTC
1 TGTATCGAAGCAGATCAAAGATGACAGATTTGGCATCTC
* * **
62080828 TGTATACGGAGAGCAGATCGAAGAT-AGCAGATCTGATAT-TC
1 TGTAT-C-GA-AGCAGATCAAAGATGA-CAGATTTGGCATCTC
* *
62080869 GTGTATTGAAGCAGATCAAAGATGACAGATTTGGCGTCTC
1 -TGTATCGAAGCAGATCAAAGATGACAGATTTGGCATCTC
* * * * *
62080909 TGTATTAGACGAAGAGCAGATCGAAA-AT-AGTAGATCTGACATTTG
1 TGTA-T---CG-A-AGCAGATC-AAAGATGA-CAGATTTGGCATCTC
62080954 TGTATCGAAGCAGATCAAAGATGACAGATTTGGCATCTC
1 TGTATCGAAGCAGATCAAAGATGACAGATTTGGCATCTC
62080993 TGTAT
1 TGTAT
62080998 TAGATGGAGA
Statistics
Matches: 131, Mismatches: 22, Indels: 34
0.70 0.12 0.18
Matches are distributed among these distances:
38 3 0.02
39 55 0.42
40 9 0.07
41 7 0.05
42 27 0.21
43 1 0.01
44 3 0.02
45 23 0.18
46 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (39 bp):
TGTATCGAAGCAGATCAAAGATGACAGATTTGGCATCTC
Found at i:62081100 original size:84 final size:84
Alignment explanation
Indices: 62080537--62081088 Score: 560
Period size: 84 Copynumber: 6.5 Consensus size: 84
62080527 CTTGAGACCA
* * * * *
62080537 AAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTA-ACAGAGGGCAAATCGAAGATAGCAG
1 AAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAAATAGCAG
* * * * *
62080601 ATTTGGCGTCTCTGTATTGATAG
66 ATCTGACAT-TC-GT-GT-ATCG
* * * * * * * *
62080624 AGAGCAAATCGAAGAT-AAAGATTTGGCGTCTCTGTATT-GACAGAGGGTAGATCGAAGACAGCA
1 A-AGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAAATAGCA
* ***
62080687 GATTTGGTGTCTC-TGTATTGACAG
65 GATCTGACAT-TCGTGTA-T--C-G
* * * **
62080711 AAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGAAGGAGAGCAGATAAAAAATAGCA
1 -AAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAAATAGCA
*
62080776 GATATGACATTCGTGTATCG
65 GATCTGACATTCGTGTATCG
* *
62080796 AAGCAGATCAAAGATGACAGATTTGGTGTCTCTGTA-T--ACGGAGAGCAGATCGAAGATAGCAG
1 AAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAAATAGCAG
* *
62080858 ATCTGATATTCGTGTATTG
66 ATCTGACATTCGTGTATCG
* *
62080877 AAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGAAGAGCAGATCGAAAATAGTAG
1 AAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAAATAGCAG
*
62080942 ATCTGACATTTGTGTATCG
66 ATCTGACATTCGTGTATCG
* * * * *
62080961 AAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGATGGAGAGTAGATCGAATATAGTAG
1 AAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAAATAGCAG
*
62081026 ATCTGACATTCGTGTATTG
66 ATCTGACATTCGTGTATCG
* * *
62081045 AAGCATATCGAAGATGACAGATTTGGTGTCTCTGTATTAGACGG
1 AAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGG
62081089 GGAGTGGATC
Statistics
Matches: 399, Mismatches: 53, Indels: 29
0.83 0.11 0.06
Matches are distributed among these distances:
81 72 0.18
82 1 0.00
83 2 0.01
84 189 0.47
85 2 0.01
86 1 0.00
87 68 0.17
88 37 0.09
89 27 0.07
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.27
Consensus pattern (84 bp):
AAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAAATAGCAG
ATCTGACATTCGTGTATCG
Found at i:62081146 original size:69 final size:69
Alignment explanation
Indices: 62081024--62081235 Score: 307
Period size: 69 Copynumber: 3.1 Consensus size: 69
62081014 CGAATATAGT
* * * * *
62081024 AGATCTGACATTCGTGTATTGAAGCATATCGAAGATGACAGATTTGGTGTCTCTGTATTAGACGG
1 AGATC-GACATTCGTGTATCGAAGCAGATCGAAGATGAAAGATTTGGTATCTCTATATTAGACGG
*
62081089 GGAGT
65 GGAGC
* * *
62081094 GGATCGACATTCGTGTATCGAAGCAGATCGAAGATGATAGGTTTGGTATCTCTATATTAGACGGG
1 AGATCGACATTCGTGTATCGAAGCAGATCGAAGATGAAAGATTTGGTATCTCTATATTAGACGGG
62081159 GAGC
66 GAGC
* * *
62081163 AGATCGACATTCGTGTATCGAAACAGATCAAAGATGAAAGATTTGGCATCTCTATATTAGACGGG
1 AGATCGACATTCGTGTATCGAAGCAGATCGAAGATGAAAGATTTGGTATCTCTATATTAGACGGG
62081228 GAGC
66 GAGC
62081232 AGAT
1 AGAT
62081236 TGAGAATAGC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
69 124 0.97
70 4 0.03
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (69 bp):
AGATCGACATTCGTGTATCGAAGCAGATCGAAGATGAAAGATTTGGTATCTCTATATTAGACGGG
GAGC
Found at i:62082740 original size:16 final size:16
Alignment explanation
Indices: 62082712--62082828 Score: 78
Period size: 16 Copynumber: 7.1 Consensus size: 16
62082702 TTTTGAAATT
62082712 TTTTATAAT-TTATTTA
1 TTTTA-AATATTATTTA
62082728 TTTTAAATATTATTTA
1 TTTTAAATATTATTTA
**
62082744 TTTTATTTATT-TTTA
1 TTTTAAATATTATTTA
* * *
62082759 CTATAAACATTATTTA
1 TTTTAAATATTATTTA
*
62082775 TGTATGTAAAAATTATTATA
1 T-T-T-TAAATATTATT-TA
* *
62082795 TATTATATATTATTTTA
1 TTTTAAATATTA-TTTA
*
62082812 TTTT-TATATTATTTA
1 TTTTAAATATTATTTA
62082827 TT
1 TT
62082829 ATATTATTTA
Statistics
Matches: 80, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
15 19 0.24
16 32 0.40
17 13 0.16
18 3 0.04
19 10 0.12
20 3 0.04
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (16 bp):
TTTTAAATATTATTTA
Found at i:62082800 original size:7 final size:7
Alignment explanation
Indices: 62082788--62082952 Score: 82
Period size: 7 Copynumber: 25.9 Consensus size: 7
62082778 ATGTAAAAAT
62082788 TATTATA
1 TATTATA
62082795 TATTATA
1 TATTATA
62082802 TATTAT-
1 TATTATA
62082808 T-TTAT-
1 TATTATA
62082813 T-TT-TA
1 TATTATA
*
62082818 TATTATT
1 TATTATA
62082825 TATTATA
1 TATTATA
62082832 TTATT-TA
1 -TATTATA
*
62082839 CATT-T-
1 TATTATA
62082844 TATTATA
1 TATTATA
*
62082851 TATTTTGA
1 TATTAT-A
62082859 T-TTATA
1 TATTATA
*
62082865 CATT-T-
1 TATTATA
62082870 TATTATA
1 TATTATA
*
62082877 TATCAT-
1 TATTATA
62082883 T-TTAT-
1 TATTATA
62082888 TA-TATA
1 TATTATA
62082894 TATTAT-
1 TATTATA
62082900 TCATTATA
1 T-ATTATA
*
62082908 T-TT-TT
1 TATTATA
62082913 TATT-T-
1 TATTATA
62082918 TATTATA
1 TATTATA
62082925 TATTATA
1 TATTATA
*
62082932 TAATTATT
1 T-ATTATA
*
62082940 TATTATT
1 TATTATA
62082947 TATTAT
1 TATTAT
62082953 TATGTATAAT
Statistics
Matches: 127, Mismatches: 12, Indels: 38
0.72 0.07 0.21
Matches are distributed among these distances:
4 1 0.01
5 27 0.21
6 21 0.17
7 65 0.51
8 13 0.10
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (7 bp):
TATTATA
Found at i:62082830 original size:12 final size:12
Alignment explanation
Indices: 62082793--62082952 Score: 103
Period size: 12 Copynumber: 13.2 Consensus size: 12
62082783 AAAATTATTA
*
62082793 TATATTATATAT
1 TATATTATTTAT
*
62082805 TATTTTATTT-T
1 TATATTATTTAT
62082816 TATATTATTTAT
1 TATATTATTTAT
62082828 TATATTATTTACAT
1 TATATTATTT--AT
* *
62082842 TTTATTATATAT
1 TATATTATTTAT
* **
62082854 TTTGATTTATACAT
1 TAT-A-TTATTTAT
* *
62082868 TTTATTATATAT
1 TATATTATTTAT
* *
62082880 CATTTTA-TTAT
1 TATATTATTTAT
*
62082891 ATATATTATTCAT
1 -TATATTATTTAT
*
62082904 TATATTTTTTAT
1 TATATTATTTAT
* *
62082916 TTTATTATATAT
1 TATATTATTTAT
*
62082928 TATA-TAATTAT
1 TATATTATTTAT
62082939 T-TATTATTTAT
1 TATATTATTTAT
62082950 TAT
1 TAT
62082953 TATGTATAAT
Statistics
Matches: 116, Mismatches: 23, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
10 2 0.02
11 26 0.22
12 63 0.54
13 5 0.04
14 20 0.17
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.64
Consensus pattern (12 bp):
TATATTATTTAT
Found at i:62082922 original size:33 final size:31
Alignment explanation
Indices: 62082787--62082927 Score: 92
Period size: 33 Copynumber: 4.4 Consensus size: 31
62082777 TATGTAAAAA
*
62082787 TTATTATATATTATATATTATTTTATTTTTATATTAT
1 TTATTATATA-TAT-T-TTATTATATTTTT-TA-T-T
* * * *
62082824 TTATTATAT-TATTTACATTTTATTATATATT
1 TTATTATATATATTT-TATTATATTTTTTATT
* * *
62082855 TTGATT-TATACATTTTATTATA--TATCATT
1 TT-ATTATATATATTTTATTATATTTTTTATT
62082884 TTATTATATATATTATTCATTATATTTTTTATT
1 TTATTATATATATT-TT-ATTATATTTTTTATT
62082917 TTATTATATAT
1 TTATTATATAT
62082928 TATATAATTA
Statistics
Matches: 83, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
28 3 0.04
29 12 0.14
30 2 0.02
31 17 0.20
32 8 0.10
33 19 0.23
34 10 0.12
35 3 0.04
37 9 0.11
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.65
Consensus pattern (31 bp):
TTATTATATATATTTTATTATATTTTTTATT
Found at i:62083368 original size:18 final size:18
Alignment explanation
Indices: 62083345--62083379 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
62083335 ATCTCATAAA
*
62083345 TTATTTGTTATTTTTATG
1 TTATTTATTATTTTTATG
*
62083363 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
62083380 ATATTCGCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:62083804 original size:83 final size:83
Alignment explanation
Indices: 62083665--62083820 Score: 303
Period size: 83 Copynumber: 1.9 Consensus size: 83
62083655 GTAATATGTC
*
62083665 AAATGCATCATTGTTATAAAAATTTATATTTCATTTAATCCAAAAGAATTTTAAAAAATAAGGCA
1 AAATGCAACATTGTTATAAAAATTTATATTTCATTTAATCCAAAAGAATTTTAAAAAATAAGGCA
62083730 ATGTTTTTTTGGTGTGTT
66 ATGTTTTTTTGGTGTGTT
62083748 AAATGCAACATTGTTATAAAAATTTATATTTCATTTAATCCAAAAGAATTTTAAAAAATAAGGCA
1 AAATGCAACATTGTTATAAAAATTTATATTTCATTTAATCCAAAAGAATTTTAAAAAATAAGGCA
62083813 ATGTTTTT
66 ATGTTTTT
62083821 GGTATTTAGG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 72 1.00
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (83 bp):
AAATGCAACATTGTTATAAAAATTTATATTTCATTTAATCCAAAAGAATTTTAAAAAATAAGGCA
ATGTTTTTTTGGTGTGTT
Found at i:62086845 original size:30 final size:30
Alignment explanation
Indices: 62086806--62086865 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
62086796 TTCCCGAGCC
*
62086806 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGCGCAAAATG-GTAATTATGCAAAAGTT
* *
62086836 TAGGCGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGCGCAAAATGGTAATTATGCAAAAGTT
62086866 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGCGCAAAATGGTAATTATGCAAAAGTT
Found at i:62087592 original size:49 final size:50
Alignment explanation
Indices: 62087512--62087757 Score: 316
Period size: 49 Copynumber: 4.9 Consensus size: 50
62087502 AGCTATTGTG
* *
62087512 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
62087562 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
62087612 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
62087662 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
62087712 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
62087758 GCTTCGGCTA
Statistics
Matches: 168, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 82 0.49
50 48 0.29
51 38 0.23
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:62087649 original size:28 final size:28
Alignment explanation
Indices: 62087617--62087700 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
62087607 AACTTCGATC
62087617 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
62087645 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
62087667 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
62087695 ACGTGT
1 ACGTGT
62087701 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:62090067 original size:2 final size:2
Alignment explanation
Indices: 62090062--62090095 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
62090052 TCTATATATA
* *
62090062 TG TG TG TG TG TA TG TG TG TA TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
62090096 AGAGCTTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.06, C:0.00, G:0.44, T:0.50
Consensus pattern (2 bp):
TG
Found at i:62091828 original size:27 final size:27
Alignment explanation
Indices: 62091790--62091843 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
62091780 TTCATGGAGT
**
62091790 TTCGTAGTAATTTTTTCGTAATTCATA
1 TTCGTAGTAATTTTTTAATAATTCATA
62091817 TTCGTAGTAATTTTTTAATAATTCATA
1 TTCGTAGTAATTTTTTAATAATTCATA
62091844 CTTTAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (27 bp):
TTCGTAGTAATTTTTTAATAATTCATA
Found at i:62093618 original size:21 final size:21
Alignment explanation
Indices: 62093592--62093632 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
62093582 GGTATGTACA
62093592 AAAAACTCATATGAATGAGCG
1 AAAAACTCATATGAATGAGCG
62093613 AAAAACTCATATGAATGAGC
1 AAAAACTCATATGAATGAGC
62093633 TCGGTATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (21 bp):
AAAAACTCATATGAATGAGCG
Found at i:62095524 original size:2 final size:2
Alignment explanation
Indices: 62095517--62095605 Score: 142
Period size: 2 Copynumber: 44.5 Consensus size: 2
62095507 ACTTTACACA
62095517 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * *
62095559 TC TT TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC AC TT TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
62095601 TC TC T
1 TC TC T
62095606 TTCACTTTTC
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 79 1.00
ACGTcount: A:0.01, C:0.46, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:62099517 original size:43 final size:43
Alignment explanation
Indices: 62099461--62099578 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
62099451 ACATATCGTA
* *
62099461 CAATGCCAATGTCCCAAACGTGGTCTTACATGTAATTACATAT
1 CAATGCCACTGTCCCAAACGTGGTCTTACATGTAATCACATAT
* * *
62099504 CAATGCCACTGTCCCAAAAAG-GGTCTTACACGTAATCACTTAT
1 CAATGCCACTGTCCC-AAACGTGGTCTTACATGTAATCACATAT
* * * *
62099547 CGATACCAACT-TCCCAGACATGGTCTTACATG
1 CAATGCC-ACTGTCCCAAACGTGGTCTTACATG
62099579 AGAACACATA
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 2 0.03
43 52 0.85
44 7 0.11
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (43 bp):
CAATGCCACTGTCCCAAACGTGGTCTTACATGTAATCACATAT
Found at i:62101929 original size:17 final size:17
Alignment explanation
Indices: 62101909--62101941 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
62101899 ATTTCTTTAT
*
62101909 TTTTCTTCATTTATTTC
1 TTTTCATCATTTATTTC
62101926 TTTTCATCATTTATTT
1 TTTTCATCATTTATTT
62101942 TTATTTCTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTCATCATTTATTTC
Found at i:62107045 original size:125 final size:125
Alignment explanation
Indices: 62106884--62107149 Score: 532
Period size: 125 Copynumber: 2.1 Consensus size: 125
62106874 CACACGGCTG
62106884 AGACACACGCCCGTGTCTCTGCCCATGTGCTCAATTCTGAGCATTCAGTTCCTCAAAATTAAGGT
1 AGACACACGCCCGTGTCTCTGCCCATGTGCTCAATTCTGAGCATTCAGTTCCTCAAAATTAAGGT
62106949 GCAGGAGACACACGGCCAGAACAAATGCCTATGAGGCAAATCGTGTGTCACACATGGCCT
66 GCAGGAGACACACGGCCAGAACAAATGCCTATGAGGCAAATCGTGTGTCACACATGGCCT
62107009 AGACACACGCCCGTGTCTCTGCCCATGTGCTCAATTCTGAGCATTCAGTTCCTCAAAATTAAGGT
1 AGACACACGCCCGTGTCTCTGCCCATGTGCTCAATTCTGAGCATTCAGTTCCTCAAAATTAAGGT
62107074 GCAGGAGACACACGGCCAGAACAAATGCCTATGAGGCAAATCGTGTGTCACACATGGCCT
66 GCAGGAGACACACGGCCAGAACAAATGCCTATGAGGCAAATCGTGTGTCACACATGGCCT
62107134 AGACACACGCCCGTGT
1 AGACACACGCCCGTGT
62107150 GTCTACCCGT
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 141 1.00
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.21
Consensus pattern (125 bp):
AGACACACGCCCGTGTCTCTGCCCATGTGCTCAATTCTGAGCATTCAGTTCCTCAAAATTAAGGT
GCAGGAGACACACGGCCAGAACAAATGCCTATGAGGCAAATCGTGTGTCACACATGGCCT
Found at i:62117332 original size:18 final size:18
Alignment explanation
Indices: 62117311--62117351 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
62117301 AAGCAGTAGG
*
62117311 AAAAACACAAGGGTTTTC
1 AAAAACACAAAGGTTTTC
* *
62117329 AAAAAGACAAATGTTTTC
1 AAAAACACAAAGGTTTTC
62117347 AAAAA
1 AAAAA
62117352 TACCACGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.54, C:0.12, G:0.12, T:0.22
Consensus pattern (18 bp):
AAAAACACAAAGGTTTTC
Found at i:62121109 original size:43 final size:43
Alignment explanation
Indices: 62121053--62121182 Score: 129
Period size: 43 Copynumber: 3.0 Consensus size: 43
62121043 ATATTGTACA
** * * *
62121053 ATGCCAACGTCCCAGACGTGGTCTTACATTTA-ATCACATATTG
1 ATGCCAATATCCCAGACGTGGTCTTACA-TGAGAACACATATCG
* * *
62121096 ATGCCACTATCCCAGGCAG-GGTGTTACATGAGAACACATATCG
1 ATGCCAATATCCCAGAC-GTGGTCTTACATGAGAACACATATCG
* * *
62121139 ATGCCAATGTCCCAGACGTGGTCTTACACGAGAACACCTATCG
1 ATGCCAATATCCCAGACGTGGTCTTACATGAGAACACATATCG
62121182 A
1 A
62121183 AAATCCTATG
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
42 3 0.04
43 66 0.94
44 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAATATCCCAGACGTGGTCTTACATGAGAACACATATCG
Found at i:62131656 original size:43 final size:43
Alignment explanation
Indices: 62131570--62131699 Score: 131
Period size: 43 Copynumber: 3.0 Consensus size: 43
62131560 ATATCATACA
* * * * *
62131570 ATGCCAACGTCCCAGACGTGGTCTT--ACATGTAATCACAAATCG
1 ATGCCAATGTCCCAAAAGTGGTCTTACACAAG-AA-CACATATCG
*
62131613 ATGCCACTGTCCCAAATAG-GGTCTTACACAAGAACACATATCG
1 ATGCCAATGTCCCAAA-AGTGGTCTTACACAAGAACACATATCG
* * *
62131656 ATGCCAATGTCCCAGACGTGGTCTTACACGAGAACACATATCG
1 ATGCCAATGTCCCAAAAGTGGTCTTACACAAGAACACATATCG
62131699 A
1 A
62131700 AAATCCTATG
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
42 1 0.01
43 65 0.89
44 3 0.04
45 4 0.05
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (43 bp):
ATGCCAATGTCCCAAAAGTGGTCTTACACAAGAACACATATCG
Found at i:62132366 original size:14 final size:15
Alignment explanation
Indices: 62132349--62132377 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
62132339 ACTCTAAAAT
62132349 TTCACACAT-ATAAA
1 TTCACACATAATAAA
62132363 TTCACACATAATAAA
1 TTCACACATAATAAA
62132378 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:62136263 original size:53 final size:53
Alignment explanation
Indices: 62136183--62136289 Score: 178
Period size: 53 Copynumber: 2.0 Consensus size: 53
62136173 GCAAGACCTT
* *
62136183 AGTTAATCCAAACAACATCACCAAAAACTCATAATGCCTATACCGAGTCTAAA
1 AGTTAATCCAAACAACATCACCAAAAACTCATAATGCCCATACCGAGTCCAAA
* *
62136236 AGTTAATCCAAACAGCATCACTAAAAACTCATAATGCCCATACCGAGTCCAAA
1 AGTTAATCCAAACAACATCACCAAAAACTCATAATGCCCATACCGAGTCCAAA
62136289 A
1 A
62136290 AGCAGTTTTC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.45, C:0.27, G:0.08, T:0.20
Consensus pattern (53 bp):
AGTTAATCCAAACAACATCACCAAAAACTCATAATGCCCATACCGAGTCCAAA
Found at i:62139771 original size:10 final size:10
Alignment explanation
Indices: 62139742--62139776 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
62139732 ATGTATTAAC
*
62139742 CACATATAAG
1 CACATATAAT
*
62139752 CAAATATAAT
1 CACATATAAT
62139762 CACATATAAT
1 CACATATAAT
62139772 CACAT
1 CACAT
62139777 TTAGTCATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.51, C:0.20, G:0.03, T:0.26
Consensus pattern (10 bp):
CACATATAAT
Found at i:62144759 original size:21 final size:21
Alignment explanation
Indices: 62144718--62144770 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
62144708 AAAATTTAGA
*
62144718 ATATTATATTTGTATATAAGT
1 ATATTATATATGTATATAAGT
*
62144739 ATATT-TATATGTATGTAAAGT
1 ATATTATATATGTATAT-AAGT
*
62144760 ATAATATATAT
1 ATATTATATAT
62144771 ATAATTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 9 0.33
21 13 0.48
22 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (21 bp):
ATATTATATATGTATATAAGT
Found at i:62147527 original size:20 final size:20
Alignment explanation
Indices: 62147481--62147537 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
62147471 TCAACAACTA
* *
62147481 TTTCACTCGATCCAAATATG
1 TTTCAATCGATCTAAATATG
* *
62147501 CTACAATCGATCTAAATATG
1 TTTCAATCGATCTAAATATG
* *
62147521 TTTCAATTGATTTAAAT
1 TTTCAATCGATCTAAAT
62147538 CAGTTACAAG
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.39
Consensus pattern (20 bp):
TTTCAATCGATCTAAATATG
Found at i:62147594 original size:20 final size:19
Alignment explanation
Indices: 62147513--62147621 Score: 74
Period size: 20 Copynumber: 5.5 Consensus size: 19
62147503 ACAATCGATC
* *
62147513 TAAATATGTTTCAATTGATT
1 TAAATCTGTTACAATT-ATT
* **
62147533 TAAATCAGTTACAAGCAATT
1 TAAATCTGTTACAA-TTATT
* *
62147553 TAAATCAGTTACAATGATT
1 TAAATCTGTTACAATTATT
*
62147572 TAAATCTGTTTCAAATTATT
1 TAAATCTGTTAC-AATTATT
** *
62147592 TAAATCTACTACAATCGATT
1 TAAATCTGTTACAAT-TATT
*
62147612 TAAATTTGTT
1 TAAATCTGTT
62147622 TCATCTTTAT
Statistics
Matches: 69, Mismatches: 17, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
19 16 0.23
20 53 0.77
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (19 bp):
TAAATCTGTTACAATTATT
Found at i:62147605 original size:59 final size:60
Alignment explanation
Indices: 62147502--62147616 Score: 146
Period size: 59 Copynumber: 1.9 Consensus size: 60
62147492 CCAAATATGC
*
62147502 TACAATCGATCTAAATATGTTTCAATTGATTTAAATCAGTTACAAGCAATTTAAATCAGT
1 TACAATCGATCTAAATATGTTTCAATTGATTTAAATCAGCTACAAGCAATTTAAATCAGT
* * * *
62147562 TACAAT-GATTTAAATCTGTTTCAAATT-ATTTAAATCTA-CTACAATCGATTTAAAT
1 TACAATCGATCTAAATATGTTTC-AATTGATTTAAATC-AGCTACAAGCAATTTAAAT
62147617 TTGTTTCATC
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
59 37 0.77
60 11 0.23
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (60 bp):
TACAATCGATCTAAATATGTTTCAATTGATTTAAATCAGCTACAAGCAATTTAAATCAGT
Found at i:62150357 original size:70 final size:68
Alignment explanation
Indices: 62150234--62150365 Score: 174
Period size: 70 Copynumber: 1.9 Consensus size: 68
62150224 TAGAGTTTCA
* * *
62150234 TCACTTTTTGTATGTGTAAATGGTGCGGTGGTGAACTAATATCACTTTTTGTATGTAATTGTCGG
1 TCACTTTTTGTATGCGTAAATAGTGCGGTGGTGAACTAATATAACTTTTTGTATGTAATTGTCGG
62150299 TTG
66 TTG
* * * * *
62150302 TCACTTTTTTGTATGCGTAATTAAGTGTGGTGGTGGAGTAATTTAACTTTTTGTATGTAATTGT
1 TCAC-TTTTTGTATGCGTAAAT-AGTGCGGTGGTGAACTAATATAACTTTTTGTATGTAATTGT
62150366 AGGATGATAT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
68 4 0.07
69 15 0.28
70 35 0.65
ACGTcount: A:0.21, C:0.08, G:0.24, T:0.46
Consensus pattern (68 bp):
TCACTTTTTGTATGCGTAAATAGTGCGGTGGTGAACTAATATAACTTTTTGTATGTAATTGTCGG
TTG
Found at i:62163996 original size:3 final size:3
Alignment explanation
Indices: 62163988--62164012 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
62163978 TTTTGAAAAG
62163988 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
62164013 CTTATTAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:62165258 original size:22 final size:22
Alignment explanation
Indices: 62165233--62165276 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
62165223 TAGTCATATA
62165233 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
62165255 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
62165277 TATTTAATAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:62165312 original size:13 final size:14
Alignment explanation
Indices: 62165296--62165337 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
62165286 GTTCAATTTT
62165296 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
62165309 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
62165324 ATTTTAAATAATAT
1 ATTTT-AATAATAT
62165338 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:62165322 original size:16 final size:16
Alignment explanation
Indices: 62165300--62165336 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
62165290 AATTTTATTT
62165300 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
62165317 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
62165332 TAATA
1 TAATA
62165337 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:62178252 original size:60 final size:60
Alignment explanation
Indices: 62178160--62178296 Score: 145
Period size: 60 Copynumber: 2.3 Consensus size: 60
62178150 CAAGCTTTAC
* * *
62178160 TGGGCCTTAGCCCATATCAATCTTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* * **
62178221 TGGGCCTAGCCCATATCAGTATCAATTTGGGCTGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
62178281 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
62178297 TAACATAGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
60 50 0.77
61 13 0.20
62 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:62183138 original size:30 final size:29
Alignment explanation
Indices: 62183095--62183155 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
62183085 CAAGTAGCCG
*
62183095 AAGCTAGTTAAATCGCACATTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
62183124 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
62183154 AA
1 AA
62183156 ACTTCTGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:62190390 original size:30 final size:29
Alignment explanation
Indices: 62190347--62190407 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
62190337 AAAGTAGCCG
62190347 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
62190376 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
62190406 AA
1 AA
62190408 ACTTCTGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:62195095 original size:14 final size:14
Alignment explanation
Indices: 62195072--62195108 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
62195062 AAGCATGTTA
*
62195072 ATTTTATATTCTAT
1 ATTTTGTATTCTAT
*
62195086 ATTTTGTATTCTGT
1 ATTTTGTATTCTAT
62195100 ATTTTGTAT
1 ATTTTGTAT
62195109 CTGTGTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.22, C:0.05, G:0.08, T:0.65
Consensus pattern (14 bp):
ATTTTGTATTCTAT
Found at i:62200161 original size:42 final size:42
Alignment explanation
Indices: 62200114--62200216 Score: 136
Period size: 42 Copynumber: 2.5 Consensus size: 42
62200104 TGAGTTTCCA
* * *
62200114 TTTAACCCTAATGGGTTTCCCTTCAGCTC-TATTGAGCTTCTG
1 TTTAACCCTTATGGGTTTCACTTCAGCTCTTA-TAAGCTTCTG
* *
62200156 TTTAACCCTTATGGGTTTCAGTTCAGTTCTTATAAGCTTCTG
1 TTTAACCCTTATGGGTTTCACTTCAGCTCTTATAAGCTTCTG
*
62200198 TTCAACCCTTATGGGTTTC
1 TTTAACCCTTATGGGTTTC
62200217 TGTTTAGCAC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 52 0.96
43 2 0.04
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (42 bp):
TTTAACCCTTATGGGTTTCACTTCAGCTCTTATAAGCTTCTG
Found at i:62200229 original size:21 final size:21
Alignment explanation
Indices: 62200149--62200259 Score: 73
Period size: 21 Copynumber: 5.4 Consensus size: 21
62200139 GCTCTATTGA
*
62200149 GCTTCTGTTTAACCCTTATGG
1 GCTTCTGTTTAGCCCTTATGG
* * * ** **
62200170 GTTTCAGTTCAGTTCTTATAA
1 GCTTCTGTTTAGCCCTTATGG
* *
62200191 GCTTCTGTTCAACCCTTATGG
1 GCTTCTGTTTAGCCCTTATGG
* * *
62200212 GTTTCTGTTTAGCACTTATGT
1 GCTTCTGTTTAGCCCTTATGG
* *
62200233 GCTTCTGTGTAG--CTTTTGG
1 GCTTCTGTTTAGCCCTTATGG
62200252 GCTTCTGT
1 GCTTCTGT
62200260 ATACGATGTA
Statistics
Matches: 66, Mismatches: 24, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
19 13 0.20
21 53 0.80
ACGTcount: A:0.14, C:0.20, G:0.21, T:0.46
Consensus pattern (21 bp):
GCTTCTGTTTAGCCCTTATGG
Found at i:62200230 original size:42 final size:42
Alignment explanation
Indices: 62200117--62200240 Score: 124
Period size: 42 Copynumber: 3.0 Consensus size: 42
62200107 GTTTCCATTT
* ** * * *
62200117 AACCCTAATGGGTTTCCCTTCAGCTC-TATTGAGCTTCTGTTT
1 AACCCTTATGGGTTTCAGTTCAGCACTTA-TAAGCTTCTGTTC
**
62200159 AACCCTTATGGGTTTCAGTTCAGTTCTTATAAGCTTCTGTTC
1 AACCCTTATGGGTTTCAGTTCAGCACTTATAAGCTTCTGTTC
* * **
62200201 AACCCTTATGGGTTTCTGTTTAGCACTTATGTGCTTCTGT
1 AACCCTTATGGGTTTCAGTTCAGCACTTATAAGCTTCTGT
62200241 GTAGCTTTTG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
42 67 0.97
43 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.43
Consensus pattern (42 bp):
AACCCTTATGGGTTTCAGTTCAGCACTTATAAGCTTCTGTTC
Found at i:62202508 original size:12 final size:12
Alignment explanation
Indices: 62202491--62202515 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62202481 TTTCTATACA
62202491 TTTCATTTCCCT
1 TTTCATTTCCCT
62202503 TTTCATTTCCCT
1 TTTCATTTCCCT
62202515 T
1 T
62202516 GCATAGCCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.32, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTCATTTCCCT
Found at i:62204384 original size:27 final size:27
Alignment explanation
Indices: 62204320--62204385 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
62204310 TGGTAGGCTG
* * *
62204320 CCCTATTTTTACTATCTTGGTGGACTA
1 CCCTATTTTTACTATCCTGATGAACTA
* *
62204347 -TCTCATGTTTACTATCCTGATGAACTA
1 CCCT-ATTTTTACTATCCTGATGAACTA
62204374 CCCTATTTTTAC
1 CCCTATTTTTAC
62204386 CGTCTCGATG
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
26 2 0.07
27 26 0.87
28 2 0.07
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.44
Consensus pattern (27 bp):
CCCTATTTTTACTATCCTGATGAACTA
Found at i:62210331 original size:166 final size:166
Alignment explanation
Indices: 62210051--62210381 Score: 547
Period size: 166 Copynumber: 2.0 Consensus size: 166
62210041 CATTTTGAGA
62210051 CACACAGCCAAAGCACATGCCCGTGTGCTAGTTAATGTCCTCCACACGGTTGAGACACACGGCCG
1 CACACAGCCAAAGCACATGCCCGTGTGCTAGTTAATGTCCTCCACACGGTTGAGACACACGGCCG
* * *
62210116 TGTCTCTACCTGTGTGTTTAATTCCATGCAACCTGACCTAAAATTTTAAGTGCAAGGGACACACG
66 TGTCCCTACCCGTGTGTTTAATTCCATGCAAACTGACCTAAAATTTTAAGTGCAAGGGACACACG
* *
62210181 GCCGGGCAACATGCCCATGGGGCTGATCGTGTGTCG
131 GCAGGGCAACATGCCCATGGGGCTGACCGTGTGTCG
* * *
62210217 CACACGGCCAAAGCACATGCCCGTGTGCTAGTCT-GTGTCCTCCACATGGTTGAGACACACGGCC
1 CACACAGCCAAAGCACATGCCCGTGTGCTAGT-TAATGTCCTCCACACGGTTGAGACACACGGCC
* * *
62210281 GTGTCCCTACCCGTGTGTTTACTTCCATGCAAACTGACCTAAAATTTTAAGTGTAGGGGACACAC
65 GTGTCCCTACCCGTGTGTTTAATTCCATGCAAACTGACCTAAAATTTTAAGTGCAAGGGACACAC
62210346 GGCAGGGCAACATGCCCATGGGGCTGACCGTGTGTC
130 GGCAGGGCAACATGCCCATGGGGCTGACCGTGTGTC
62210382 TACTCGTGTG
Statistics
Matches: 153, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
166 152 0.99
167 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (166 bp):
CACACAGCCAAAGCACATGCCCGTGTGCTAGTTAATGTCCTCCACACGGTTGAGACACACGGCCG
TGTCCCTACCCGTGTGTTTAATTCCATGCAAACTGACCTAAAATTTTAAGTGCAAGGGACACACG
GCAGGGCAACATGCCCATGGGGCTGACCGTGTGTCG
Found at i:62215492 original size:30 final size:31
Alignment explanation
Indices: 62215458--62215520 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
62215448 ACTTATTTTA
*
62215458 TTGTTAA-TTATTTTATTATTTTAAAGGCAT
1 TTGTTAATTTATTTTATTAATTTAAAGGCAT
* *
62215488 TTGTTAATTTTTTTTATTAATTTAGAGGCAT
1 TTGTTAATTTATTTTATTAATTTAAAGGCAT
62215519 TT
1 TT
62215521 TCTTGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 7 0.24
31 22 0.76
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.59
Consensus pattern (31 bp):
TTGTTAATTTATTTTATTAATTTAAAGGCAT
Found at i:62219419 original size:40 final size:40
Alignment explanation
Indices: 62219360--62219526 Score: 235
Period size: 40 Copynumber: 4.2 Consensus size: 40
62219350 TCATGCAGTT
*
62219360 TTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
1 TTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
*
62219400 TTCGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
1 TTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
* * *
62219440 TTCGTGCTAGTGATGTACCCGGGCTAAGTCTCGAAGAGCA
1 TTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
* * * * * *
62219480 TTCGTGCTGGTGTTACATCCGAGCTAAGTCCTGAAGGGCA
1 TTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
62219520 TTCGTGC
1 TTCGTGC
62219527 CGGTGATGTG
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 112 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
TTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
Found at i:62219493 original size:80 final size:80
Alignment explanation
Indices: 62219360--62219535 Score: 271
Period size: 80 Copynumber: 2.2 Consensus size: 80
62219350 TCATGCAGTT
* * *
62219360 TTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGCT
1 TTCGTGCTAGTGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTACATCCGAGCT
62219425 AAGTCCCGAAGAGCA
66 AAGTCCCGAAGAGCA
* *
62219440 TTCGTGCTAGTGATGTACCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTACATCCGAGCT
1 TTCGTGCTAGTGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTACATCCGAGCT
* *
62219505 AAGTCCTGAAGGGCA
66 AAGTCCCGAAGAGCA
**
62219520 TTCGTGCCGGTGATGT
1 TTCGTGCTAGTGATGT
62219536 GTAATCAGGC
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 87 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (80 bp):
TTCGTGCTAGTGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTACATCCGAGCT
AAGTCCCGAAGAGCA
Found at i:62219734 original size:25 final size:25
Alignment explanation
Indices: 62219695--62219749 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
62219685 TGTGTAATAA
62219695 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGGCACTATGTGTG
*
62219720 CGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATAT-AGGCACTATGTGTG
62219745 CGAAT
1 CGAAT
62219750 TCTTTAACCG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (25 bp):
CGAATGAATATAGGCACTATGTGTG
Found at i:62233647 original size:47 final size:47
Alignment explanation
Indices: 62233594--62234004 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
62233584 TTAGGATTCT
62233594 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62233641 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62233688 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62233735 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62233782 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62233829 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62233876 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
62233923 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
62233970 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62234005 TCCCGAAGGG
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:62234179 original size:37 final size:37
Alignment explanation
Indices: 62234123--62234201 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
62234113 CCGAGCTCTA
* * *
62234123 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
62234160 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
62234197 AAGAC
1 AAGAC
62234202 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:62235496 original size:56 final size:56
Alignment explanation
Indices: 62235335--62235497 Score: 211
Period size: 56 Copynumber: 2.9 Consensus size: 56
62235325 TACATGTAAT
* * * * * *
62235335 CACATATCGATGACAACATACTAGACGTGGTCTTACTCGCACACATATACCAGAAT
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAGAAC
* **
62235391 CACATATCGATGCTAACGTATTAAACGTGGTCTTACTCGCACACATATATTGGAAC
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAGAAC
* *
62235447 CACATATTGATGCCAACGTATTAAATGTGGTCTTACAT-GCACACATATATC
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTAC-TCGCACACATATATC
62235498 GATGCCATGG
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
56 92 0.99
57 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (56 bp):
CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAGAAC
Found at i:62244283 original size:28 final size:29
Alignment explanation
Indices: 62244252--62244350 Score: 102
Period size: 28 Copynumber: 3.5 Consensus size: 29
62244242 GTATCGGGGA
62244252 TGGCACTTAGTGTGC-AATACATCCAGAC
1 TGGCACTTAGTGTGCGAATACATCCAGAC
**
62244280 TGGCACTTAGTGTGCGAAGTA-A-CGGGGA-
1 TGGCACTTAGTGTGCGAA-TACATC-CAGAC
*
62244308 TGGCACTTAGTGTGCGAA-ACATCTAGAAC
1 TGGCACTTAGTGTGCGAATACATCCAG-AC
62244337 -GGCACTTAGTGTGC
1 TGGCACTTAGTGTGC
62244351 AAGGTATCAG
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
26 1 0.02
27 2 0.03
28 50 0.83
29 5 0.08
30 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (29 bp):
TGGCACTTAGTGTGCGAATACATCCAGAC
Found at i:62244310 original size:56 final size:57
Alignment explanation
Indices: 62244224--62244385 Score: 190
Period size: 56 Copynumber: 2.9 Consensus size: 57
62244214 TAGTTATATG
** *
62244224 TGGCACTTAACGTGTGAAGTATCGGGGATGGCACTTAGTGTGCAATACATCCAG-AC
1 TGGCACTTAGTGTGCGAAGTATCGGGGATGGCACTTAGTGTGCAATACATCCAGAAC
* *
62244280 TGGCACTTAGTGTGCGAAGTAACGGGGATGGCACTTAGTGTGCGAA-ACATCTAGAAC
1 TGGCACTTAGTGTGCGAAGTATCGGGGATGGCACTTAGTGTGC-AATACATCCAGAAC
* * *
62244337 -GGCACTTAGTGTGC-AAGGTATCAGGTATGGCA-TCTAGTGTGCGATACAT
1 TGGCACTTAGTGTGCGAA-GTATCGGGGATGGCACT-TAGTGTGCAATACAT
62244386 TGAATATTCA
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
55 4 0.04
56 84 0.91
57 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (57 bp):
TGGCACTTAGTGTGCGAAGTATCGGGGATGGCACTTAGTGTGCAATACATCCAGAAC
Found at i:62244368 original size:28 final size:27
Alignment explanation
Indices: 62244224--62244378 Score: 97
Period size: 28 Copynumber: 5.6 Consensus size: 27
62244214 TAGTTATATG
*
62244224 TGGCACTTAACGTGTG-AAGTATCGGGGA
1 TGGCACTT-A-GTGTGCAAGTATCAGGGA
62244252 TGGCACTTAGTGTGCAA-TACATCCA--GA
1 TGGCACTTAGTGTGCAAGT--AT-CAGGGA
* *
62244279 CTGGCACTTAGTGTGCGAAGTAACGGGGA
1 -TGGCACTTAGTGTGC-AAGTATCAGGGA
** *
62244308 TGGCACTTAGTGTGCGAAACATCTA-GAA
1 TGGCACTTAGTGTGC-AAGTATC-AGGGA
* *
62244336 CGGCACTTAGTGTGCAAGGTATCAGGTA
1 TGGCACTTAGTGTGCAA-GTATCAGGGA
62244364 TGGCA-TCTAGTGTGC
1 TGGCACT-TAGTGTGC
62244379 GATACATTGA
Statistics
Matches: 101, Mismatches: 13, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
26 6 0.06
27 10 0.10
28 79 0.78
29 5 0.05
30 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (27 bp):
TGGCACTTAGTGTGCAAGTATCAGGGA
Found at i:62244502 original size:32 final size:32
Alignment explanation
Indices: 62244428--62244526 Score: 126
Period size: 32 Copynumber: 3.1 Consensus size: 32
62244418 TGAGTATGAG
* * * * * *
62244428 ATTGGTACGAGATGATACAGGTATCTACGGAA
1 ATTGGTACAATATGGTACATGTATGTACGAAA
62244460 ATTGGTACAATATGGTACATGTATGTACGAAA
1 ATTGGTACAATATGGTACATGTATGTACGAAA
* *
62244492 ATTGGTACAATATAGTACATGTATGTACAAAA
1 ATTGGTACAATATGGTACATGTATGTACGAAA
62244524 ATT
1 ATT
62244527 CAATTGAGTA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 59 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.30
Consensus pattern (32 bp):
ATTGGTACAATATGGTACATGTATGTACGAAA
Found at i:62249024 original size:31 final size:31
Alignment explanation
Indices: 62248986--62249046 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
62248976 TTTCATATTT
62248986 CATATTTCATAACACTGGGCCGAAGACTTTC
1 CATATTTCATAACACTGGGCCGAAGACTTTC
** *
62249017 CATATTTCATATTACTGGGCCGAAGCCTTT
1 CATATTTCATAACACTGGGCCGAAGACTTT
62249047 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATTTCATAACACTGGGCCGAAGACTTTC
Found at i:62249363 original size:26 final size:25
Alignment explanation
Indices: 62249255--62249362 Score: 141
Period size: 25 Copynumber: 4.4 Consensus size: 25
62249245 CTGGAGGCCT
*
62249255 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
62249279 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
62249304 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
62249329 AGCCCTTTTCGGTAAACTGGGGC-AT
1 AGCCCTTTT-GATAAACTGGGGCAAA
62249354 AGCCCTTTT
1 AGCCCTTTT
62249363 TGCACTTCCT
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
23 7 0.09
24 13 0.17
25 45 0.59
26 11 0.14
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Done.