Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 186 of 284
Found at i:63071566 original size:196 final size:193
Alignment explanation
Indices: 63071178--63071637 Score: 659
Period size: 196 Copynumber: 2.4 Consensus size: 193
63071168 TTGATATATA
* * *
63071178 TCTAATTGAGGGCCAAGTTAATGTTGGCTTTGCTGAATAATGAGTCTAATTTTCCTTTCATTTGC
1 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
* * * **
63071243 ATGCAATCATTAGTTGATGATGAGATAAAAACTAGACTCATAATCCAGCAAAGTCAGTATTATAG
66 ATGCAATCAATAGTTGATGAAGAGAAAAAAACTAGACTCATAATCCAGCAAAGTCAACATTATAG
* *
63071308 GGCTATTAGCAATGGATAACAACTTGTACTTGCCAATGATCAATCAACACATGTTAATTGATC
131 GGCTATTAACAATGGATAACAACTTGTACTTGCAAATGATCAATCAACACATGTTAATTGATC
* * *
63071371 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGC
1 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
** * *
63071436 ATGCAATCAATAGTTGATGAAGAGAAAAAAAACACTAGGTTCATAATCCAGCAAGGTGAACATTA
66 ATGCAATCAATAGTTGATGAAGAG--AAAAAA-ACTAGACTCATAATCCAGCAAAGTCAACATTA
* * *
63071501 TAGGGCTATTAACAATGGATAATAACTTGTATTTGCAAATGATCAATCAACACATGTTGATTGAT
128 TAGGGCTATTAACAATGGATAACAACTTGTACTTGCAAATGATCAATCAACACATGTTAATTGAT
63071566 C
193 C
* * * * *
63071567 TCTAGTTGAGAGCCAATTTAATGTCGACTTTGCTAAATTATGAGTCTAATTTTTCTTTCATTTGC
1 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
*
63071632 AAGCAA
66 ATGCAA
63071638 CGATCAATTT
Statistics
Matches: 235, Mismatches: 29, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
193 81 0.34
195 5 0.02
196 149 0.63
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (193 bp):
TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
ATGCAATCAATAGTTGATGAAGAGAAAAAAACTAGACTCATAATCCAGCAAAGTCAACATTATAG
GGCTATTAACAATGGATAACAACTTGTACTTGCAAATGATCAATCAACACATGTTAATTGATC
Found at i:63078727 original size:241 final size:240
Alignment explanation
Indices: 63078178--63079480 Score: 1783
Period size: 241 Copynumber: 5.5 Consensus size: 240
63078168 AACTCTAACA
* * * * * *
63078178 ATTAATTCGACTCTCAATTAAGGATCAAGATTTGTTAGATAAACAAATTA-ATTGATTGAAATTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
** *
63078242 AATATGATCAATCTATTAATTAGTACCCATTTATCTAGCTTTAACACATATAAGATGCTTTCCAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * * * *
63078307 TGCTCATTGCTTTATAATGTCAACTTTTCTGGATGATGAGCCTAATTTTTATTTC-T--T--T-G
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCG
63078366 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
195 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * * * *
63078412 ACTAATTTGGCTCTCAATTAAGGATCAATATTTATTAGATAAACAAACTAAATCGATTGAAACCG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
*
63078477 ACCATGATCAATCTATTAATTAGTACCCGTTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * *
63078542 TGCTTGTGGCTTTATAATGACAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCG
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCG
* * *
63078607 GATGCAAATAAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAT
195 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
*
63078653 ATTAATTTGACTCTAAATTAAGGATCGACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
* *
63078718 GCCATGATCAATATATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * *
63078783 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTT--TAT-TTC-T--TCG
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCG
*
63078842 CATGCAAATGAAAGGAAAGTTAGACTCATAATTTAGCAAAGTCGAC
195 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * * * * *
63078888 ACTAATTTGGCTCTCAATTAAGGATAGACATATATTAGATAAACAAACTAGATTGATTGAAACCG
1 ATTAATTTGACTCTCAATTAAGGAT-CACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
* * * *
63078953 ACCATGATCAATCTATTAATTAGTACTCGTTTGTCTAGTTTTAACACATAAAAGATGCTTTCCAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* *
63079018 TGCTTGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCG
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCG
* *
63079083 CATGCAAATGAAAGGAAAATTAGACTCATAATTTAGCAAAGTCGAC
195 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * * *
63079129 ATTAATTTGACTCTCAATTAAAGATCAGCATTTATTAGATAAATAAACTCGGTCGATTGAAA-TC
1 ATTAATTTGACTCTCAATTAAGGATCA-CATTTATTAGATAAACAAACTAGATCGATTGAAACT-
* *
63079193 GACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAATATAAGATGCTTTCTA
64 GACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCA
* * * * * * * *
63079258 ATGCTCGTAGCCTTATAATGTCAATTTTGTTGGATTGTGAACGTAGTTTTCATTTCTTCATCATT
129 ATGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATC
** * *
63079323 GCATGCAAATGAAAGGAAAACTAAACTCATAATTCAGCAAAGTCAAC
194 GCATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * *
63079370 ATTAATTT-AGCTTTCAATTAAGGATCAGCTTTTATTAGATAAACAAACTAAATCGATT-AAGAC
1 ATTAATTTGA-CTCTCAATTAAGGATCA-CATTTATTAGATAAACAAACTAGATCGATTGAA-AC
* *
63079433 TGACCATGCTCCATCTATTAATTAGTACCCATTTATCTAGTTTTAACA
63 TGACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACA
63079481 ATTTTCTAAT
Statistics
Matches: 950, Mismatches: 100, Indels: 31
0.88 0.09 0.03
Matches are distributed among these distances:
234 44 0.05
235 327 0.34
236 1 0.00
237 3 0.00
238 6 0.01
239 3 0.00
240 5 0.01
241 560 0.59
242 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (240 bp):
ATTAATTTGACTCTCAATTAAGGATCACATTTATTAGATAAACAAACTAGATCGATTGAAACTGA
CCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAAT
GCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCGC
ATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
Found at i:63079123 original size:476 final size:475
Alignment explanation
Indices: 63078178--63079480 Score: 1932
Period size: 476 Copynumber: 2.7 Consensus size: 475
63078168 AACTCTAACA
* * * * *
63078178 ATTAATTCGACTCTCAATTAAGGATCAAGATTTGTTAGATAAACAAATTA-ATTGATTGAAATTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAA-TG
** *
63078242 AATATGATCAATCTATTAATTAGTACCCATTTATCTAGCTTTAACACATATAAGATGCTTTCCAA
64 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * *
63078307 TGCTCATTGCTTTATAATGTCAACTTTTCTGGATGATGAGCCTAATTTTTATTTCTTTGCATGCA
129 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCATGCA
63078372 AATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
194 AATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
*
63078437 CA-ATATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGT
259 CAGACATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGT
* *
63078501 ACCCGTTTATCTAGTTTTAACACATATAAGATGCTTTCCAATGCTTGTGGCTTTATAATGACAAC
324 ACCCGTTTATCTAGTTTTAACACATAAAAGATGCTTTCCAATGCTTGTAGCTTTATAATGACAAC
* * *
63078566 TTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCGGATGCAAATAAAAGGAAAGTTAGA
389 TTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATAAAAGGAAAATTAGA
*
63078631 CTCATAATTCAGCAAAGTCGAT
454 CTCATAATTCAGCAAAGTCGAC
*
63078653 ATTAATTTGACTCTAAATTAAGGATCGACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAA-TG
* *
63078718 GCCATGATCAATATATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
64 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
63078783 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCATGCA
129 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCATGCA
*
63078848 AATGAAAGGAAAGTTAGACTCATAATTTAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
194 AATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
* * *
63078913 -AGACATATATTAGATAAACAAACTAGATTGATTGAAACCGACCATGATCAATCTATTAATTAGT
259 CAGACATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGT
* * *
63078977 ACTCGTTTGTCTAGTTTTAACACATAAAAGATGCTTTCCAATGCTTGTAGCTTTATAATGTCAAC
324 ACCCGTTTATCTAGTTTTAACACATAAAAGATGCTTTCCAATGCTTGTAGCTTTATAATGACAAC
*
63079042 TTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATGAAAGGAAAATTAGA
389 TTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATAAAAGGAAAATTAGA
*
63079107 CTCATAATTTAGCAAAGTCGAC
454 CTCATAATTCAGCAAAGTCGAC
* * * *
63079129 ATTAATTTGACTCTCAATTAAAGATCAGCATTTATTAGATAAATAAACTCGGTCGATTGAAATCG
1 ATTAATTTGACTCTCAATTAAGGATCA-CATTTATTAGATAAACAAACTAGATCGATTGAAAT-G
* *
63079194 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAATATAAGATGCTTTCTAA
64 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * * * * * * * * *
63079259 TGCTCGTAGCCTTATAATGTCAATTTTGTTGGATTGTGAACGTAGTTTTCATTTCTTCATCATTG
129 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTC-T--TC---G
** * * * * *
63079324 CATGCAAATGAAAGGAAAACTAAACTCATAATTCAGCAAAGTCAACATTAATTTAGCTTTCAATT
188 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATT
* * * *
63079389 AAGGATCAG-CTTTTATTAGATAAACAAACTAAATCGATT-AAGACTGACCATGCTCCATCTATT
253 AAGGATCAGACATTTATTAGATAAACAAACTAAATCGATTGAA-ACCGACCATGATCAATCTATT
*
63079452 AATTAGTACCCATTTATCTAGTTTTAACA
317 AATTAGTACCCGTTTATCTAGTTTTAACA
63079481 ATTTTCTAAT
Statistics
Matches: 747, Mismatches: 69, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
475 47 0.06
476 559 0.75
477 1 0.00
479 2 0.00
481 2 0.00
482 134 0.18
483 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (475 bp):
ATTAATTTGACTCTCAATTAAGGATCACATTTATTAGATAAACAAACTAGATCGATTGAAATGAC
CATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAATG
CTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCATGCAAA
TGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGATCA
GACATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGTAC
CCGTTTATCTAGTTTTAACACATAAAAGATGCTTTCCAATGCTTGTAGCTTTATAATGACAACTT
TGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATAAAAGGAAAATTAGACT
CATAATTCAGCAAAGTCGAC
Found at i:63081147 original size:17 final size:17
Alignment explanation
Indices: 63081109--63081147 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
63081099 AATTGAATCG
63081109 ATTTAAAGATTTTAATT
1 ATTTAAAGATTTTAATT
*
63081126 TTTTAAAGAATTTT-ATT
1 ATTTAAAG-ATTTTAATT
63081143 ATTTA
1 ATTTA
63081148 TAACTAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (17 bp):
ATTTAAAGATTTTAATT
Found at i:63087664 original size:60 final size:60
Alignment explanation
Indices: 63087590--63087703 Score: 169
Period size: 60 Copynumber: 1.9 Consensus size: 60
63087580 ACTTATTTTT
*
63087590 TTGTAATTATAATTT-TATGAATTTTTAAAATAAAGATCGAATTGACATAATGTGGAAACA
1 TTGTAATTATAATTTGT-TGAATTTTTAAAATAAAGATCAAATTGACATAATGTGGAAACA
* *
63087650 TTGTAAGTTA-AATTTGTTGAATTTTTAAAATTAGGATCAAATTGACATAATGTG
1 TTGTAA-TTATAATTTGTTGAATTTTTAAAATAAAGATCAAATTGACATAATGTG
63087704 TAGAATATCA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
60 45 0.92
61 4 0.08
ACGTcount: A:0.40, C:0.04, G:0.15, T:0.40
Consensus pattern (60 bp):
TTGTAATTATAATTTGTTGAATTTTTAAAATAAAGATCAAATTGACATAATGTGGAAACA
Found at i:63093588 original size:13 final size:13
Alignment explanation
Indices: 63093570--63093597 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
63093560 TTGCCCGTGG
63093570 TTTTTTATCCTCT
1 TTTTTTATCCTCT
63093583 TTTTTTATCCTCT
1 TTTTTTATCCTCT
63093596 TT
1 TT
63093598 GGAAGAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTTTATCCTCT
Found at i:63094326 original size:9 final size:8
Alignment explanation
Indices: 63094290--63094322 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
63094280 AGGGTTCTTT
*
63094290 GTTTTCGA
1 GTTTTCGG
63094298 GTTTTCGG
1 GTTTTCGG
63094306 GTTTTCGG
1 GTTTTCGG
63094314 GTTTTCGG
1 GTTTTCGG
63094322 G
1 G
63094323 GTTTAGTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.03, C:0.12, G:0.36, T:0.48
Consensus pattern (8 bp):
GTTTTCGG
Found at i:63097005 original size:14 final size:14
Alignment explanation
Indices: 63096986--63097020 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
63096976 GACATTTTTT
* *
63096986 TTCTAATGATATTA
1 TTCTAACGATACTA
63097000 TTCTAACGATACTA
1 TTCTAACGATACTA
63097014 TTCTAAC
1 TTCTAAC
63097021 ATGTAATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCTAACGATACTA
Found at i:63098282 original size:65 final size:64
Alignment explanation
Indices: 63098178--63098409 Score: 274
Period size: 65 Copynumber: 3.6 Consensus size: 64
63098168 AGATTAATTG
* **
63098178 CAACATTAACACTTGGAACAAACTTTATGGTCATAAATTAGATTAATTGCAACATTACAACATTA
1 CAACATTAAAACTTGGAACAAACTTTATAAT-ATAAATTAGATTAATTGCAACATTACAACATTA
* *
63098243 CAACATTAAAACTTGGAACAAACTTTGTAGTCATAAATTAGATTAATTGCAACATTACAACATTA
1 CAACATTAAAACTTGGAACAAACTTTATAAT-ATAAATTAGATTAATTGCAACATTACAACATTA
* ** *
63098308 CAACATTAAAATTTGGAACAAACTTTATAATATAAATT-TTTTAATAT--AA-ATTAAATACATT
1 CAACATTAAAACTTGGAACAAACTTTATAATATAAATTAGATTAAT-TGCAACATTACA-ACATT
63098369 A
64 A
* * * **
63098370 TAATATTAAAAATTGGAACAAACTTGGTAATATAAATTAG
1 CAACATTAAAACTTGGAACAAACTTTATAATATAAATTAG
63098410 GTACATTGGA
Statistics
Matches: 149, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
61 5 0.03
62 41 0.28
63 5 0.03
64 8 0.05
65 90 0.60
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (64 bp):
CAACATTAAAACTTGGAACAAACTTTATAATATAAATTAGATTAATTGCAACATTACAACATTA
Found at i:63099735 original size:676 final size:677
Alignment explanation
Indices: 63098403--63099759 Score: 2256
Period size: 676 Copynumber: 2.0 Consensus size: 677
63098393 TTGGTAATAT
* *
63098403 AAATTAGGTACATTGGATTACATAAGCTCAATTCCTACCCGATCGTGACGATTGTCCAATATGGT
1 AAATTAGGTACAATGGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
* * *
63098468 AGTTTCGCTTCGAGCATTTACTTCGATTATGACCAGCTAATCTGCATAATCCACAACGCTTACCG
66 AGTTTCGCTGCGAGCATTTACTTCAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAACG
* *
63098533 TCGGATTTCTCCTTAATGTCCATTTCATTATGGATTCAGGATGATTACGGACGACCTTTTGAATT
131 TCGGATTTCTCCCTAATGTCCATTTCATTATGGATTCAGGATAATTACGGACGACCTTTTGAATT
*
63098598 CCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGATAGGT
196 CCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGGT
* * * *
63098663 CAGGTAGGATGGGGAACTCATTCTCCCAGACACACAACGTGCGCTTGAGGGTGTACACATCATCG
261 CAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCGCTTGAAGGTGTACACATCATCA
* *
63098728 ACAAATTATTCAATATTGAGCAAGACTTTAGCATATGCTGTCACGACATGCTTAAATAGATAAAG
326 ACAAATTATTCAATATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCTTAAATAGATAAAG
*
63098793 AAGTGTTTGGAACCTCTTGCAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAGATA
391 AAGTGTTTGGAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAGATA
* * * *
63098858 GTATACTGGGTCGACGATCAATGGTCTCTGTAACTTAAAATGGTTCAAGACATCGTGAATATACT
456 GTATACTGAGTCAACGATCAATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATATACT
* *
63098923 TCTACATTCATCAACCTCGCAATCCAACGGTTTGCAACCATTGCATCCTTAACATCTTCAATAAA
521 TCTACATTCATCAACCTCACAATCCAACGGTTTGCAACCATTGCATCCTTAACATCTTCAACAAA
*
63098988 CACGTGTTTCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACC
586 CACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACC
63099053 TGTAGAATGTAGCCGAGAAGACAGATG
651 TGTAGAATGTAGCCGAGAAGACAGATG
* *
63099080 AAATTAGGTACAATGGATTACGTAAGCTTAATTCCTACCC-ATCGTGACAATTGTCCAATATGGT
1 AAATTAGGTACAATGGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
63099144 AGTTTCGCTGCGAGCATTTA-TTCCAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAAC
66 AGTTTCGCTGCGAGCATTTACTT-CAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAAC
* *
63099208 GTCGGATTTCTCCCTAATGTCTATTTCATTATGGATTCAGGATAATTGCGGACGACCTTTTGAAT
130 GTCGGATTTCTCCCTAATGTCCATTTCATTATGGATTCAGGATAATTACGGACGACCTTTTGAAT
63099273 TCCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGG
195 TCCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGG
*
63099338 TCAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCTCTTGAAGGTGTACACATCATC
260 TCAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCGCTTGAAGGTGTACACATCATC
* * *
63099403 AACAAATTGTTCAACT-TTGAGCAAGACTTTAGCACATGTTGCCACGACATG-TGTAAATGGATA
325 AACAAATTATTCAA-TATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCT-TAAATAGATA
* *
63099466 AAGAAGTGTTTGGAACCTTTTACAATCGCACCGTCTATTTCGGAGATCAACTTCATAGGACCTAG
388 AAGAAGTGTTTGGAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAG
* * * * * *
63099531 ATAGTATAAC-GAGTTAACGATCGATGGTCTCTGTAACTCGAAACGTTTCAAGTCATCTTGAATA
453 ATAGTAT-ACTGAGTCAACGATCAATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATA
* * * *
63099595 TACTTCTACATTCATCGACCTCACAATCCGACGGTTTGCAACTATTGCATCCTTGACATCTTCAA
517 TACTTCTACATTCATCAACCTCACAATCCAACGGTTTGCAACCATTGCATCCTTAACATCTTCAA
63099660 CAAACACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCC
582 CAAACACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCC
*
63099725 AACCTGTAGAATGTAGCCGAGAAGATAGATG
647 AACCTGTAGAATGTAGCCGAGAAGACAGATG
63099756 AAAT
1 AAAT
63099760 CGAAAGATGT
Statistics
Matches: 633, Mismatches: 43, Indels: 9
0.92 0.06 0.01
Matches are distributed among these distances:
675 3 0.00
676 590 0.93
677 40 0.06
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (677 bp):
AAATTAGGTACAATGGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
AGTTTCGCTGCGAGCATTTACTTCAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAACG
TCGGATTTCTCCCTAATGTCCATTTCATTATGGATTCAGGATAATTACGGACGACCTTTTGAATT
CCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGGT
CAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCGCTTGAAGGTGTACACATCATCA
ACAAATTATTCAATATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCTTAAATAGATAAAG
AAGTGTTTGGAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAGATA
GTATACTGAGTCAACGATCAATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATATACT
TCTACATTCATCAACCTCACAATCCAACGGTTTGCAACCATTGCATCCTTAACATCTTCAACAAA
CACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACC
TGTAGAATGTAGCCGAGAAGACAGATG
Found at i:63107314 original size:8 final size:8
Alignment explanation
Indices: 63107301--63107329 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
63107291 AGATACAAAC
63107301 TCTTTTTT
1 TCTTTTTT
63107309 TC-TTTTT
1 TCTTTTTT
63107316 TCTTTTTT
1 TCTTTTTT
63107324 TCTTTT
1 TCTTTT
63107330 CTGAAATGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (8 bp):
TCTTTTTT
Found at i:63107321 original size:15 final size:15
Alignment explanation
Indices: 63107301--63107329 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
63107291 AGATACAAAC
63107301 TCTTTTTTTCTTTTT
1 TCTTTTTTTCTTTTT
63107316 TCTTTTTTTCTTTT
1 TCTTTTTTTCTTTT
63107330 CTGAAATGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TCTTTTTTTCTTTTT
Found at i:63108173 original size:22 final size:21
Alignment explanation
Indices: 63108142--63108217 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 21
63108132 ATAATACCCA
*
63108142 AATAAA-AATAATAAAATAAT
1 AATAAACAATAACAAAATAAT
* *
63108162 AATAATACAATAGCAAAATAGT
1 AATAA-ACAATAACAAAATAAT
*
63108184 AGTAAAACAATAACAAACAGTAAT
1 AAT-AAACAATAACAAA-A-TAAT
63108208 AATAAACAAT
1 AATAAACAAT
63108218 TGTAAAAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
20 5 0.11
21 1 0.02
22 23 0.52
23 10 0.23
24 5 0.11
ACGTcount: A:0.66, C:0.08, G:0.05, T:0.21
Consensus pattern (21 bp):
AATAAACAATAACAAAATAAT
Found at i:63108181 original size:36 final size:36
Alignment explanation
Indices: 63108112--63108181 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
63108102 TAGCAAAATT
* *
63108112 AATAATAAAATAAAAATTAAATAATACCCAAATAAA
1 AATAATAAAATAAAAATTAAACAATACCAAAATAAA
* *
63108148 AATAATAAAATAATAA-TAATACAATAGCAAAATA
1 AATAATAAAATAAAAATTAA-ACAATACCAAAATA
63108182 GTAGTAAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 3 0.10
36 26 0.90
ACGTcount: A:0.69, C:0.07, G:0.01, T:0.23
Consensus pattern (36 bp):
AATAATAAAATAAAAATTAAACAATACCAAAATAAA
Found at i:63109850 original size:21 final size:20
Alignment explanation
Indices: 63109826--63109869 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
63109816 CTGATTAATA
*
63109826 TAATTTTAATATTTT-AAGATT
1 TAATTATAAT-TTTTCAA-ATT
63109847 TAATTATAATTTTTCAAATT
1 TAATTATAATTTTTCAAATT
63109867 TAA
1 TAA
63109870 GAACCATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
TAATTATAATTTTTCAAATT
Found at i:63109975 original size:21 final size:21
Alignment explanation
Indices: 63109949--63109988 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
63109939 TAAGAAAGAA
63109949 CTCAAAATATAATATTTATTG
1 CTCAAAATATAATATTTATTG
*
63109970 CTCAAAATATAGTATTTAT
1 CTCAAAATATAATATTTAT
63109989 AGCATGATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.42
Consensus pattern (21 bp):
CTCAAAATATAATATTTATTG
Found at i:63113872 original size:5 final size:5
Alignment explanation
Indices: 63113862--63113895 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
63113852 GAAGGAATTG
*
63113862 GATGA GATGA GATGA GATGA GATGA GATGG GATG
1 GATGA GATGA GATGA GATGA GATGA GATGA GATG
63113896 CAGTTCCTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.44, T:0.21
Consensus pattern (5 bp):
GATGA
Found at i:63114272 original size:5 final size:5
Alignment explanation
Indices: 63114262--63114286 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
63114252 TTTTAAAAAA
63114262 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
63114287 GAAGTTGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:63114277 original size:23 final size:24
Alignment explanation
Indices: 63114221--63114279 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
63114211 TTTTATTCAA
* *
63114221 ATTTGATTTTGAAAATATTAATTTT
1 ATTTTATTTT-AAAAAATTAATTTT
63114246 -TTTTAATTTTAAAAAATT-ATTTT
1 ATTTT-ATTTTAAAAAATTAATTTT
63114269 ATTTTATTTTA
1 ATTTTATTTTA
63114280 TTTTATTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
23 11 0.37
24 14 0.47
25 5 0.17
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (24 bp):
ATTTTATTTTAAAAAATTAATTTT
Found at i:63120690 original size:3 final size:3
Alignment explanation
Indices: 63120684--63120836 Score: 64
Period size: 3 Copynumber: 51.7 Consensus size: 3
63120674 GTAATGAAAG
* *
63120684 ATA ATA ATA ATT ATA ATA ATA AT- ATCA ATA ATA ATA TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
* * * * ** * *
63120729 TTA ATA AGA A-A AAA ATA GTA ATA GCA TTA ATA ATA AT- TTA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * * * * * *
63120773 ATA ATG TTA ATA GTA ATA A-A AGA ACA ATA A-A ACTT ATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA
** *
63120817 AGG CTA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
63120837 GATGATGATG
Statistics
Matches: 108, Mismatches: 34, Indels: 16
0.68 0.22 0.10
Matches are distributed among these distances:
2 9 0.08
3 94 0.87
4 5 0.05
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:63120841 original size:3 final size:3
Alignment explanation
Indices: 63120835--63120860 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
63120825 AATAATAATA
63120835 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
63120861 AATAAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:63126432 original size:22 final size:21
Alignment explanation
Indices: 63126407--63126448 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63126397 AAATATTTTT
* *
63126407 AAAAGTATTTTTGAAAAAAAG
1 AAAAATATTTTTCAAAAAAAG
*
63126428 AAAAATATTTTTCAGAAAAAG
1 AAAAATATTTTTCAAAAAAAG
63126449 CTAAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.57, C:0.02, G:0.12, T:0.29
Consensus pattern (21 bp):
AAAAATATTTTTCAAAAAAAG
Found at i:63126454 original size:22 final size:21
Alignment explanation
Indices: 63126406--63126459 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
63126396 GAAATATTTT
*
63126406 TAAAAGTATTTTTGAAAAAAAG
1 TAAAA-TATTTTTCAAAAAAAG
* *
63126428 AAAAATATTTTTCAGAAAAAG
1 TAAAATATTTTTCAAAAAAAG
63126449 CTAAAAT-TTTT
1 -TAAAATATTTT
63126460 AACTTTTGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.52, C:0.04, G:0.09, T:0.35
Consensus pattern (21 bp):
TAAAATATTTTTCAAAAAAAG
Found at i:63130393 original size:35 final size:36
Alignment explanation
Indices: 63130354--63130431 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 36
63130344 GTTAATTGAC
** * *
63130354 GGGTTTAGGGTTTAAGTTT-TACGATTTGGGGTTTG
1 GGGTTTAGGGTAAAAGTTTATACAATTTGGGGTTTA
*
63130389 GGGTTTAGGGTAAAAGTTTATATAATTTGGGGTTTA
1 GGGTTTAGGGTAAAAGTTTATACAATTTGGGGTTTA
63130425 GGGTTTA
1 GGGTTTA
63130432 CGATTAATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 17 0.46
36 20 0.54
ACGTcount: A:0.21, C:0.01, G:0.35, T:0.44
Consensus pattern (36 bp):
GGGTTTAGGGTAAAAGTTTATACAATTTGGGGTTTA
Found at i:63131635 original size:16 final size:16
Alignment explanation
Indices: 63131614--63131645 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
63131604 ACTTAGTAAT
63131614 TAAAAGATACAGTTAA
1 TAAAAGATACAGTTAA
63131630 TAAAAGATACAGTTAA
1 TAAAAGATACAGTTAA
63131646 GAAATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (16 bp):
TAAAAGATACAGTTAA
Found at i:63132716 original size:47 final size:47
Alignment explanation
Indices: 63132647--63132740 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 47
63132637 TGCTTCGATT
*
63132647 CCCCTTCCAAAAGATAATTTAGGGCTTGATTAATGCATATGGAGGTG
1 CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
* * * *
63132694 CCCCTTCTAAAATATAATTTAGGATTTGATTAATGCATGTGGAGGTG
1 CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
63132741 GTCTAGCGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (47 bp):
CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
Found at i:63133246 original size:9 final size:9
Alignment explanation
Indices: 63133232--63133469 Score: 113
Period size: 9 Copynumber: 25.6 Consensus size: 9
63133222 ATTAATATTA
*
63133232 TACATAAAT
1 TACATAACT
63133241 TACATAACT
1 TACATAACT
63133250 TA-ATTAA-T
1 TACA-TAACT
*
63133258 TA-AT-ATT
1 TACATAACT
63133265 ATACATAACT
1 -TACATAACT
63133275 TACATAACT
1 TACATAACT
63133284 TAC--AACT
1 TACATAACT
63133291 TACATAACT
1 TACATAACT
*
63133300 TACATTAATATT
1 TACA-T-A-ACT
*
63133312 ATACATAAAT
1 -TACATAACT
63133322 TACATAACT
1 TACATAACT
*
63133331 TACATTAATATT
1 TACA-T-A-ACT
*
63133343 ATACATAAAT
1 -TACATAACT
63133353 TACATAACT
1 TACATAACT
63133362 TA-ATTAA-T
1 TACA-TAACT
*
63133370 TA-AT-ATT
1 TACATAACT
63133377 ATACATAACT
1 -TACATAACT
63133387 TAC--AACT
1 TACATAACT
63133394 TACATAACT
1 TACATAACT
*
63133403 TACATTAATATT
1 TACA-T-A-ACT
*
63133415 ATACATAAAT
1 -TACATAACT
63133425 TACATAACT
1 TACATAACT
*
63133434 TACATTAATATT
1 TACA-T-A-ACT
*
63133446 ATACATAAAT
1 -TACATAACT
63133456 TACATAACT
1 TACATAACT
63133465 TACAT
1 TACAT
63133470 TAATACGACA
Statistics
Matches: 184, Mismatches: 15, Indels: 60
0.71 0.06 0.23
Matches are distributed among these distances:
6 2 0.01
7 18 0.10
8 14 0.08
9 98 0.53
10 16 0.09
11 8 0.04
12 12 0.07
13 16 0.09
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.38
Consensus pattern (9 bp):
TACATAACT
Found at i:63133292 original size:16 final size:16
Alignment explanation
Indices: 63133271--63133303 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
63133261 TATTATACAT
63133271 AACTTACATAACTTAC
1 AACTTACATAACTTAC
63133287 AACTTACATAACTTAC
1 AACTTACATAACTTAC
63133303 A
1 A
63133304 TTAATATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:63133325 original size:31 final size:31
Alignment explanation
Indices: 63133320--63133474 Score: 211
Period size: 31 Copynumber: 4.7 Consensus size: 31
63133310 TTATACATAA
63133320 ATTACATAACTTACATTAATATTATACATAA
1 ATTACATAACTTACATTAATATTATACATAA
*
63133351 ATTACATAACTTAATTAATTAATATTATACATAACTTACA
1 ATTACATAACTT-A--CATTAATATTATAC---A--TA-A
63133391 ACTTACATAACTTACATTAATATTATACATAA
1 A-TTACATAACTTACATTAATATTATACATAA
63133423 ATTACATAACTTACATTAATATTATACATAA
1 ATTACATAACTTACATTAATATTATACATAA
63133454 ATTACATAACTTACATTAATA
1 ATTACATAACTTACATTAATA
63133475 CGACATAACT
Statistics
Matches: 112, Mismatches: 2, Indels: 20
0.84 0.01 0.15
Matches are distributed among these distances:
31 63 0.56
32 3 0.03
33 2 0.02
34 13 0.12
35 1 0.01
37 1 0.01
38 13 0.12
39 2 0.02
40 3 0.03
41 11 0.10
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.39
Consensus pattern (31 bp):
ATTACATAACTTACATTAATATTATACATAA
Found at i:63133420 original size:103 final size:109
Alignment explanation
Indices: 63133220--63133473 Score: 430
Period size: 103 Copynumber: 2.3 Consensus size: 109
63133210 CGTAGAAGCC
63133220 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACATAACTT
1 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTAT--ATAAC-TACATAACTT
63133285 ACAACTTACATAACTTACATTAATATTATACATAAATTACATAACTT
63 ACAACTTACATAACTTACATTAATATTATACATAAATTACATAACTT
63133332 ACATTAATATTATACATAAATTACATAACTTAATTAATT-A-A-TAT-T-A-TACATAACTTACA
1 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATATAACTACATAACTTACA
63133391 ACTTACATAACTTACATTAATATTATACATAAATTACATAACTT
66 ACTTACATAACTTACATTAATATTATACATAAATTACATAACTT
63133435 ACATTAATATTATACATAAATTACATAACTTACATTAAT
1 ACATTAATATTATACATAAATTACATAACTTA-ATTAAT
63133474 ACGACATAAC
Statistics
Matches: 141, Mismatches: 0, Indels: 10
0.93 0.00 0.07
Matches are distributed among these distances:
103 89 0.63
104 6 0.04
105 1 0.01
106 1 0.01
109 3 0.02
110 1 0.01
111 1 0.01
112 39 0.28
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.39
Consensus pattern (109 bp):
ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATATAACTACATAACTTACA
ACTTACATAACTTACATTAATATTATACATAAATTACATAACTT
Found at i:63133429 original size:112 final size:104
Alignment explanation
Indices: 63133220--63133473 Score: 363
Period size: 112 Copynumber: 2.4 Consensus size: 104
63133210 CGTAGAAGCC
63133220 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACATAACTT
1 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACA-AACTT
63133285 ACAACTTACATAACTTACATTAATATTATACATAAATTACATAACTT
65 ACAACTTACATAA-TT---TT--TA-TATACATAAATTACATAACTT
63133332 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTAC-AACTTA
1 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACAAACTTA
*
63133396 CATAACTTACATTAA--TAT-TATACATAAATTACATAACTT
66 C--AACTTACA-TAATTTTTATATACATAAATTACATAACTT
63133435 ACATTAATATTATACATAAATTACATAACTTACATTAAT
1 ACATTAATATTATACATAAATTACATAACTTA-ATTAAT
63133474 ACGACATAAC
Statistics
Matches: 137, Mismatches: 1, Indels: 16
0.89 0.01 0.10
Matches are distributed among these distances:
103 53 0.39
104 6 0.04
105 1 0.01
107 1 0.01
110 7 0.05
112 66 0.48
113 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.39
Consensus pattern (104 bp):
ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACAAACTTA
CAACTTACATAATTTTTATATACATAAATTACATAACTT
Found at i:63133513 original size:94 final size:94
Alignment explanation
Indices: 63133299--63133589 Score: 290
Period size: 103 Copynumber: 3.0 Consensus size: 94
63133289 CTTACATAAC
*
63133299 TTACATTAATATTATACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTA
1 TTACATTAATATGATACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTT-
** *
63133364 ATTAATTAATATTATACATAACTTACAACTTACATA-AC
65 A--AATTAATA--CGACATAACTT---A-TTA-ATATAT
*
63133402 TTACATTAATATTATACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTA
1 TTACATTAATATGATACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTA
*
63133467 CATTAATACGACATAACTTATTAATATAT
66 AATTAATACGACATAACTTATTAATATAT
* * * *
63133496 TTATGGA-TAA-ATGATACATAACTTACATAACTT--ATTAATACTTTTACATTTTTAA-TACAT
1 TTA--CATTAATATGATACATAAATTACATAACTTACATTAATA-TTATACA---TAAATTACAT
*
63133556 AACTTATA-TAATACGACATAACTTATTAATATAT
60 AACTTAAATTAATACGACATAACTTATTAATATAT
63133590 ATCATATGAT
Statistics
Matches: 171, Mismatches: 10, Indels: 23
0.84 0.05 0.11
Matches are distributed among these distances:
92 7 0.04
93 9 0.05
94 54 0.32
95 16 0.09
96 4 0.02
98 9 0.05
100 7 0.04
102 1 0.01
103 64 0.37
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.40
Consensus pattern (94 bp):
TTACATTAATATGATACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTA
AATTAATACGACATAACTTATTAATATAT
Found at i:63138791 original size:21 final size:21
Alignment explanation
Indices: 63138767--63138810 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
63138757 GAATCTTTAG
*
63138767 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
63138788 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
63138809 TA
1 TA
63138811 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:63139246 original size:21 final size:21
Alignment explanation
Indices: 63139220--63139270 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
63139210 CTACAACTTA
* * *
63139220 AAGCAGATGCGGCAATGAGAG
1 AAGCAGAGGCAGCAACGAGAG
63139241 AAGCAGAGGCAGCAACGAGAG
1 AAGCAGAGGCAGCAACGAGAG
*
63139262 AAGCCGAGG
1 AAGCAGAGG
63139271 TTCAACGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.39, C:0.18, G:0.39, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCAGCAACGAGAG
Found at i:63139260 original size:87 final size:87
Alignment explanation
Indices: 63139154--63139337 Score: 255
Period size: 87 Copynumber: 2.1 Consensus size: 87
63139144 ACACAACTTA
* * *
63139154 AAGCGGAGGCAACATCGAGAGAAGCTAAGGTTCAA-AAAAGATATGAAGAACTCCAGCTA-CAAC
1 AAGCAGAGGCAACAACGAGAGAAGCCAAGGTTCAACAAAAG-TATGAAGAACTCCAGC-AGCAAC
*
63139217 TTAAAGCAGATGCGGCAATGAGAG
64 TTAAAGCAGATGCGGCAACGAGAG
* * * *
63139241 AAGCAGAGGCAGCAACGAGAGAAGCCGAGGTTCAACGAAAGTATGAAGAACTCCAGCAGCAGCTT
1 AAGCAGAGGCAACAACGAGAGAAGCCAAGGTTCAACAAAAGTATGAAGAACTCCAGCAGCAACTT
*
63139306 AAAGCAGATGCGGCAGCGAGAG
66 AAAGCAGATGCGGCAACGAGAG
63139328 AAGCAGAGGC
1 AAGCAGAGGC
63139338 TGCAGCAAGG
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
86 1 0.01
87 81 0.94
88 4 0.05
ACGTcount: A:0.40, C:0.19, G:0.30, T:0.11
Consensus pattern (87 bp):
AAGCAGAGGCAACAACGAGAGAAGCCAAGGTTCAACAAAAGTATGAAGAACTCCAGCAGCAACTT
AAAGCAGATGCGGCAACGAGAG
Found at i:63139369 original size:87 final size:86
Alignment explanation
Indices: 63139186--63139392 Score: 227
Period size: 87 Copynumber: 2.4 Consensus size: 86
63139176 AGCTAAGGTT
* *
63139186 CAAAAAAGATATGAAGAACTCCAGCTA-CAACTTAAAGCAGATGCGGCAATGAGAGAAGCAGAGG
1 CAAAAAAG-TATGAAGAACTCCAGC-AGCAGCTTAAAGCAGATGCGGCAACGAGAGAAGCAGAGG
* * * ***
63139250 CAGCAACGAGAGAAGCCGAGGTT
64 CAGCAACAAGAGAAACAGAGCAG
* *
63139273 CAACGAAAGTATGAAGAACTCCAGCAGCAGCTTAAAGCAGATGCGGCAGCGAGAGAAGCAGAGGC
1 CAA-AAAAGTATGAAGAACTCCAGCAGCAGCTTAAAGCAGATGCGGCAACGAGAGAAGCAGAGGC
* * *
63139338 TGCAGCAAGGGAAACAGAGCAG
65 AGCAACAAGAGAAACAGAGCAG
* * *
63139360 CATAAAAAGTACGATGAACTCCAACAGCAGCTT
1 CA-AAAAAGTATGAAGAACTCCAGCAGCAGCTT
63139393 CAGAATATGA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
86 1 0.01
87 94 0.94
88 5 0.05
ACGTcount: A:0.41, C:0.20, G:0.28, T:0.11
Consensus pattern (86 bp):
CAAAAAAGTATGAAGAACTCCAGCAGCAGCTTAAAGCAGATGCGGCAACGAGAGAAGCAGAGGCA
GCAACAAGAGAAACAGAGCAG
Found at i:63139838 original size:43 final size:43
Alignment explanation
Indices: 63139665--63139823 Score: 180
Period size: 43 Copynumber: 3.6 Consensus size: 43
63139655 GTCAAATTTA
* *
63139665 GCGGCGTTTTTGGTAAAAGCGCCGCTATATAGA-CAAAGGGTAT-TT
1 GCGGCGTTTTTGGGAAAAGCGCCGC--TATAGATC--AGGGTCTATT
*
63139710 AGCGGCGTTTTCT-GGATAAGCGCCGCTATAGATCAGGGTCTATT
1 -GCGGCGTTTT-TGGGAAAAGCGCCGCTATAGATCAGGGTCTATT
* * **
63139754 GCGGCGCTTGTGGGAAAAATGCCGCTATAGATCAGGGTCTATT
1 GCGGCGTTTTTGGGAAAAGCGCCGCTATAGATCAGGGTCTATT
63139797 GCGGCGTTTTTGGGAAAAGCGCCGCTA
1 GCGGCGTTTTTGGGAAAAGCGCCGCTA
63139824 AAGGCCATGA
Statistics
Matches: 97, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
42 1 0.01
43 65 0.67
44 8 0.08
45 1 0.01
46 21 0.22
47 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (43 bp):
GCGGCGTTTTTGGGAAAAGCGCCGCTATAGATCAGGGTCTATT
Found at i:63140125 original size:31 final size:33
Alignment explanation
Indices: 63140069--63140130 Score: 92
Period size: 31 Copynumber: 1.9 Consensus size: 33
63140059 AGCGGCATCT
*
63140069 TTTGCGGCGCTTATCAAAGCACCGCTAAAAGTA
1 TTTGCGGCGCTTATAAAAGCACCGCTAAAAGTA
*
63140102 TTTGCGGCGC-TA-AAAAGCGCCGCTAAAAG
1 TTTGCGGCGCTTATAAAAGCACCGCTAAAAG
63140131 CTTGTTTTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 15 0.56
32 2 0.07
33 10 0.37
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (33 bp):
TTTGCGGCGCTTATAAAAGCACCGCTAAAAGTA
Found at i:63141439 original size:21 final size:21
Alignment explanation
Indices: 63141413--63141463 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
63141403 CTACAACTTA
* * *
63141413 AAGCAGATGCGGCAATGAGAG
1 AAGCAGAGGCAGCAACGAGAG
63141434 AAGCAGAGGCAGCAACGAGAG
1 AAGCAGAGGCAGCAACGAGAG
*
63141455 AAGCTGAGG
1 AAGCAGAGG
63141464 TTCAACGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.39, C:0.16, G:0.39, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCAGCAACGAGAG
Found at i:63141457 original size:87 final size:87
Alignment explanation
Indices: 63141347--63141530 Score: 264
Period size: 87 Copynumber: 2.1 Consensus size: 87
63141337 ACACAACTTA
* *
63141347 AAGCGGAGGCAACATCGAGAGAAGCTAAGGTTCAA-AAAAGATATGAAGAACTCCAGCTA-CAAC
1 AAGCAGAGGCAACAACGAGAGAAGCTAAGGTTCAACAAAAG-TATGAAGAACTCCAGC-AGCAAC
*
63141410 TTAAAGCAGATGCGGCAATGAGAG
64 TTAAAGCAGATGCGGCAACGAGAG
* * * *
63141434 AAGCAGAGGCAGCAACGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCAGCAGCAGCTT
1 AAGCAGAGGCAACAACGAGAGAAGCTAAGGTTCAACAAAAGTATGAAGAACTCCAGCAGCAACTT
*
63141499 AAAGCAGATGCGGCAGCGAGAG
66 AAAGCAGATGCGGCAACGAGAG
63141521 AAGCAGAGGC
1 AAGCAGAGGC
63141531 TAAAGCGAGG
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
86 1 0.01
87 82 0.94
88 4 0.05
ACGTcount: A:0.40, C:0.18, G:0.30, T:0.11
Consensus pattern (87 bp):
AAGCAGAGGCAACAACGAGAGAAGCTAAGGTTCAACAAAAGTATGAAGAACTCCAGCAGCAACTT
AAAGCAGATGCGGCAACGAGAG
Found at i:63141537 original size:21 final size:21
Alignment explanation
Indices: 63141513--63141552 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
63141503 CAGATGCGGC
63141513 AGCGAGAGAAGCAGAGGCTAA
1 AGCGAGAGAAGCAGAGGCTAA
* *
63141534 AGCGAGGGAAGTAGAGGCT
1 AGCGAGAGAAGCAGAGGCT
63141553 GCGGCGAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.42, T:0.07
Consensus pattern (21 bp):
AGCGAGAGAAGCAGAGGCTAA
Found at i:63141921 original size:43 final size:43
Alignment explanation
Indices: 63141873--63142175 Score: 401
Period size: 43 Copynumber: 7.1 Consensus size: 43
63141863 CAAAATTAGC
* *
63141873 GGCGTTTTTTGCATAAGCGCCACTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * *
63141916 GGCGTTTTTTTCCTAAGCGCCGCGAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
** * *
63141959 GGCGTTTTTCACCTAAGCGCCGCTAAAGACCATGGTCTGTAGT
1 GGCGTTTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * *
63142002 GGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGT
1 GGCGTTTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * ** *
63142045 GGCGTTTGTTGGTTAAGCGTTGCTAAAGACCATGGTCTGTAGT
1 GGCGTTTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * *
63142088 GGCGTTTGTTGGTTAAGCACCGCTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
63142131 GGCGTTTTTTG-GTAAGCGCCGCTAAAGACCACGGTCTATAGT
1 GGCGTTTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
63142173 GGC
1 GGC
63142176 AAGCGAGGGA
Statistics
Matches: 237, Mismatches: 23, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
42 31 0.13
43 206 0.87
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (43 bp):
GGCGTTTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
Found at i:63142564 original size:43 final size:43
Alignment explanation
Indices: 63142516--63142947 Score: 568
Period size: 43 Copynumber: 10.1 Consensus size: 43
63142506 CAAAATTAGC
** *
63142516 GGCGTTTTTTGCATAAGCGCCACTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
*** *
63142559 GGCGTTTTTTTCCTAAGCGCCGCGAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
**** *
63142602 GGCGTTTTTCACCTAAGCGCCGCTAAAGACCATGGTCTGTAGT
1 GGCGTTTTTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
63142645 GGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGT
1 GGCGTTTTTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
63142688 GGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGT
1 GGCGTTTTTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* ** *
63142731 GGCGTTTGTTGGTTAAGCGTTGCTAAAGACCATGGTCTGTAGT
1 GGCGTTTTTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
63142774 GGCGTTTGTTGGTTAAGCACCGCTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
63142817 GGCGTTTTTTGG-TAAGCGCCGCTAAAGACCACGGTCTATAGT
1 GGCGTTTTTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
63142859 GGCGTTTTTT--TTAAGCGCCGCTAAAGACCACGGTCTATAGT
1 GGCGTTTTTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
** * *
63142900 GGCGTTTTTAT--TTAAGCATCGCTAAAGAACATGGTCTATAGC
1 GGCGTTTTT-TGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
63142942 GGCGTT
1 GGCGTT
63142948 GTAAAAAAAA
Statistics
Matches: 360, Mismatches: 27, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
41 39 0.11
42 71 0.20
43 250 0.69
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (43 bp):
GGCGTTTTTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
Found at i:63142759 original size:643 final size:644
Alignment explanation
Indices: 63141533--63142819 Score: 2486
Period size: 643 Copynumber: 2.0 Consensus size: 644
63141523 GCAGAGGCTA
63141533 AAGCGAGGGAAGTAGAGGCTGCGGCGAGGGAAGCAGAACAGCTTAAAAAGTTCGATGAACTTCAG
1 AAGCGAGGGAAGTAGAGGCTGCGGCGAGGGAAGCAGAACAGCTTAAAAAGTTCGATGAACTTCAG
63141598 CAGCAGCTTCAGAATATGATGAAGATGTTTCAGCAATCGCAACCGCCGTCGTCTTAGACTATCGT
66 CAGCAGCTTCAGAATATGATGAAGATGTTTCAGCAATCGCAACCGCCGTCGTCTTAGACTATCGT
63141663 GTAAATATACTTCAATTTTGACTTTGGTATTATCATTTAAACTTTTACAATTTTTGTAAGAATAA
131 GTAAATATACTTCAATTTTGACTTTGGTATTATCATTTAAACTTTTACAATTTTTGTAAGAATAA
63141728 TACGAATTTTATTTTATTTATTGACATTTATTTTAAATATTATATAGATTTATTACTTTTGGTTG
196 TACGAATTTTATTTTATTTATTGACATTTATTTTAAATATTATATAGATTTATTACTTTTGGTTG
63141793 GTTTAGATTTGGTTTCTTCTGATTTGTTTTTACAGGAGGGCTGCAAATAAAAAAAACTTTCTAAA
261 GTTTAGATTTGGTTTCTTCTGATTTGTTTTTACAGGAGGGCTGCAAATAAAAAAAACTTTCTAAA
63141858 TCTGCCAAAATTAGCGGCGTTTTTTGCATAAGCGCCACTAAAGACCATGGTCTATAGTGGCGTTT
326 TCTGCCAAAATTAGCGGCGTTTTTTGCATAAGCGCCACTAAAGACCATGGTCTATAGTGGCGTTT
63141923 TTTTCCTAAGCGCCGCGAAAGACCATGGTCTATAGTGGCGTTTTTCACCTAAGCGCCGCTAAAGA
391 TTTTCCTAAGCGCCGCGAAAGACCATGGTCTATAGTGGCGTTTTTCACCTAAGCGCCGCTAAAGA
63141988 CCATGGTCTGTAGTGGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGTGGCGTTTG
456 CCATGGTCTGTAGTGGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGTGGCGTTTG
**
63142053 TTGGTTAAGCGTTGCTAAAGACCATGGTCTGTAGTGGCGTTTGTTGGTTAAGCACCGCTAAAGAC
521 TTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGTGGCGTTTGTTGGTTAAGCACCGCTAAAGAC
* *
63142118 CATGGTCTATAGTGGCGTTTTTTGG-TAAGCGCCGCTAAAGACCACGGTCTATAGTGGC
586 CATGGTCTATAGTGGCGTTTGTTGGTTAAGCACCGCTAAAGACCACGGTCTATAGTGGC
63142176 AAGCGAGGGAAGTAGAGGCTGCGGCGAGGGAAGCAGAACAGCTTAAAAAGTTCGATGAACTTCAG
1 AAGCGAGGGAAGTAGAGGCTGCGGCGAGGGAAGCAGAACAGCTTAAAAAGTTCGATGAACTTCAG
63142241 CAGCAGCTTCAGAATATGATGAAGATGTTTCAGCAATCGCAACCGCCGTCGTCTTAGACTATCGT
66 CAGCAGCTTCAGAATATGATGAAGATGTTTCAGCAATCGCAACCGCCGTCGTCTTAGACTATCGT
63142306 GTAAATATACTTCAATTTTGACTTTGGTATTATCATTTAAACTTTTACAATTTTTGTAAGAATAA
131 GTAAATATACTTCAATTTTGACTTTGGTATTATCATTTAAACTTTTACAATTTTTGTAAGAATAA
63142371 TACGAATTTTATTTTATTTATTGACATTTATTTTAAATATTATATAGATTTATTACTTTTGGTTG
196 TACGAATTTTATTTTATTTATTGACATTTATTTTAAATATTATATAGATTTATTACTTTTGGTTG
63142436 GTTTAGATTTGGTTTCTTCTGATTTGTTTTTACAGGAGGGCTGCAAATAAAAAAAACTTTCTAAA
261 GTTTAGATTTGGTTTCTTCTGATTTGTTTTTACAGGAGGGCTGCAAATAAAAAAAACTTTCTAAA
63142501 TCTGCCAAAATTAGCGGCGTTTTTTGCATAAGCGCCACTAAAGACCATGGTCTATAGTGGCGTTT
326 TCTGCCAAAATTAGCGGCGTTTTTTGCATAAGCGCCACTAAAGACCATGGTCTATAGTGGCGTTT
63142566 TTTTCCTAAGCGCCGCGAAAGACCATGGTCTATAGTGGCGTTTTTCACCTAAGCGCCGCTAAAGA
391 TTTTCCTAAGCGCCGCGAAAGACCATGGTCTATAGTGGCGTTTTTCACCTAAGCGCCGCTAAAGA
63142631 CCATGGTCTGTAGTGGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGTGGCGTTTG
456 CCATGGTCTGTAGTGGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGTGGCGTTTG
***
63142696 TTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGTGGCGTTTGTTGGTTAAGCGTTGCTAAAGAC
521 TTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGTGGCGTTTGTTGGTTAAGCACCGCTAAAGAC
* *
63142761 CATGGTCTGTAGTGGCGTTTGTTGGTTAAGCACCGCTAAAGACCATGGTCTATAGTGGC
586 CATGGTCTATAGTGGCGTTTGTTGGTTAAGCACCGCTAAAGACCACGGTCTATAGTGGC
63142820 GTTTTTTGGT
Statistics
Matches: 634, Mismatches: 9, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
643 603 0.95
644 31 0.05
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (644 bp):
AAGCGAGGGAAGTAGAGGCTGCGGCGAGGGAAGCAGAACAGCTTAAAAAGTTCGATGAACTTCAG
CAGCAGCTTCAGAATATGATGAAGATGTTTCAGCAATCGCAACCGCCGTCGTCTTAGACTATCGT
GTAAATATACTTCAATTTTGACTTTGGTATTATCATTTAAACTTTTACAATTTTTGTAAGAATAA
TACGAATTTTATTTTATTTATTGACATTTATTTTAAATATTATATAGATTTATTACTTTTGGTTG
GTTTAGATTTGGTTTCTTCTGATTTGTTTTTACAGGAGGGCTGCAAATAAAAAAAACTTTCTAAA
TCTGCCAAAATTAGCGGCGTTTTTTGCATAAGCGCCACTAAAGACCATGGTCTATAGTGGCGTTT
TTTTCCTAAGCGCCGCGAAAGACCATGGTCTATAGTGGCGTTTTTCACCTAAGCGCCGCTAAAGA
CCATGGTCTGTAGTGGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGTGGCGTTTG
TTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGTGGCGTTTGTTGGTTAAGCACCGCTAAAGAC
CATGGTCTATAGTGGCGTTTGTTGGTTAAGCACCGCTAAAGACCACGGTCTATAGTGGC
Found at i:63145445 original size:51 final size:52
Alignment explanation
Indices: 63145382--63145510 Score: 185
Period size: 52 Copynumber: 2.5 Consensus size: 52
63145372 CGGATACTCG
*
63145382 GTGGCC-TACACATAGTACCACCCTTGT-ATCCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCAT-CACATAGTACCACACTTGTGA-CCAAAGCTATCCTTCTTCACAAA
*
63145433 GTGG-CATTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCA-TCACATAGTACCACACTTGTGACCAAAGCTATCCTTCTTCACAAA
63145485 GTGGCCATCACATAGTACCACACTTG
1 GTGGCCATCACATAGTACCACACTTG
63145511 AGTCACTAGT
Statistics
Matches: 71, Mismatches: 2, Indels: 9
0.87 0.02 0.11
Matches are distributed among these distances:
50 1 0.01
51 31 0.44
52 37 0.52
53 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.26
Consensus pattern (52 bp):
GTGGCCATCACATAGTACCACACTTGTGACCAAAGCTATCCTTCTTCACAAA
Found at i:63149919 original size:51 final size:52
Alignment explanation
Indices: 63149836--63149964 Score: 181
Period size: 52 Copynumber: 2.5 Consensus size: 52
63149826 CGGATACCCG
* *
63149836 GTGGCCTACACATAGTACCAC-CTTTGTAACCAAAGCTA-CATTCTTCACAAA
1 GTGGCCTTCACAAAGTACCACAC-TTGTAACCAAAGCTATCATTCTTCACAAA
* *
63149887 GTGGCCTTCACAAAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACAAAGTACCACACTTGTAACCAAAGCTATCATTCTTCACAAA
* *
63149939 GTGGCCTTCACACAGTATCACACTTG
1 GTGGCCTTCACAAAGTACCACACTTG
63149965 AGTCACTAGT
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
51 33 0.47
52 37 0.53
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (52 bp):
GTGGCCTTCACAAAGTACCACACTTGTAACCAAAGCTATCATTCTTCACAAA
Found at i:63150345 original size:17 final size:17
Alignment explanation
Indices: 63150313--63150347 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
63150303 TTATTAAAAG
63150313 GTTAAGTTGGTAAATAA
1 GTTAAGTTGGTAAATAA
63150330 GTTAA-TTGGTATAATAA
1 GTTAAGTTGGTA-AATAA
63150347 G
1 G
63150348 ACAAAATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.37
Consensus pattern (17 bp):
GTTAAGTTGGTAAATAA
Found at i:63151353 original size:51 final size:51
Alignment explanation
Indices: 63151190--63151357 Score: 216
Period size: 52 Copynumber: 3.3 Consensus size: 51
63151180 TAGTGACTCT
* * *
63151190 AGTGTGGTACTATGTGAAGGCCACTTTGAGAA-AAGCTAGC-TTGATCACA
1 AGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACA
* *
63151239 AGTGTGGTACTATGTAAAAGCCACTTTGTGAAGAAAGATAGCTTTGGTCACA
1 AGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCACA
* *
63151291 AGTGTGGTACTATGTGAAGGTCACTTTGTGAAGAAGGTAGCTTTGG-CTACA
1 AGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-ACA
* *
63151342 AGGGTTGTACTATGTG
1 AGTGTGGTACTATGTG
63151358 CAGGTCATCG
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 29 0.28
50 1 0.01
51 36 0.35
52 38 0.37
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.30
Consensus pattern (51 bp):
AGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACA
Found at i:63151363 original size:51 final size:52
Alignment explanation
Indices: 63151193--63151364 Score: 192
Period size: 51 Copynumber: 3.4 Consensus size: 52
63151183 TGACTCTAGT
* * * * *
63151193 GTGGTACTATGTGAAGGCCACTTTGAG-A-AAAGCTAGC-TTGATCACAAGT
1 GTGGTACTATGTGAAGGTCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGG
* * * *
63151242 GTGGTACTATGTAAAAGCCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGT
1 GTGGTACTATGTGAAGGTCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGG
*
63151294 GTGGTACTATGTGAAGGTCACTTTGTGAAG-AAGGTAGCTTTGG-CTACAAGG
1 GTGGTACTATGTGAAGGTCACTTTGTGAAGAAAGATAGCTTTGGTC-ACAAGG
* *
63151345 GTTGTACTATGTGCAGGTCA
1 GTGGTACTATGTGAAGGTCA
63151365 TCGGGTATCC
Statistics
Matches: 107, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
49 24 0.22
50 2 0.02
51 43 0.40
52 38 0.36
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (52 bp):
GTGGTACTATGTGAAGGTCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGG
Found at i:63157760 original size:41 final size:41
Alignment explanation
Indices: 63157679--63157757 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 41
63157669 TCCCCACTCA
* * *
63157679 AAAGCAACCCCAAACTATAAGTAAATGCCTTGATTAAAAGT
1 AAAGCAACCCCAAACTATAACTAAATACCTTAATTAAAAGT
*
63157720 AAAGCAA-CCCTAACTATAACTAAATACCTTAATTAAAA
1 AAAGCAACCCCAAACTATAACTAAATACCTTAATTAAAA
63157758 AGTGAATCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
40 27 0.79
41 7 0.21
ACGTcount: A:0.49, C:0.20, G:0.08, T:0.23
Consensus pattern (41 bp):
AAAGCAACCCCAAACTATAACTAAATACCTTAATTAAAAGT
Found at i:63164221 original size:11 final size:12
Alignment explanation
Indices: 63164199--63164230 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
63164189 TTTATTTAAC
63164199 ATACACATACAA
1 ATACACATACAA
63164211 ATACA-ATACAA
1 ATACACATACAA
63164222 ATACACATA
1 ATACACATA
63164231 TTTCTGGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.59, C:0.22, G:0.00, T:0.19
Consensus pattern (12 bp):
ATACACATACAA
Found at i:63164632 original size:5 final size:5
Alignment explanation
Indices: 63164622--63164649 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
63164612 TCAAAAATGA
63164622 AAAAC AAAAC AAAAC AAAAC AAAAC AAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAA
63164650 TAATCAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:63170882 original size:14 final size:15
Alignment explanation
Indices: 63170853--63170884 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
63170843 TATTCAAACT
63170853 TTTTTTGAAAATTTA
1 TTTTTTGAAAATTTA
63170868 TTTTTTGAAAA-TTA
1 TTTTTTGAAAATTTA
63170882 TTT
1 TTT
63170885 ATTATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (15 bp):
TTTTTTGAAAATTTA
Found at i:63170902 original size:19 final size:18
Alignment explanation
Indices: 63170864--63170922 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
63170854 TTTTTGAAAA
*
63170864 TTTATTTTTTGAAAATTATT
1 TTTATTTTTT-ATAA-TATT
63170884 TATTATTTTTTATAATATT
1 T-TTATTTTTTATAATATT
*
63170903 TTAATTTTTTTATAATATT
1 TTTA-TTTTTTATAATATT
63170922 T
1 T
63170923 GTTTATTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 2 0.06
19 20 0.57
20 4 0.11
21 9 0.26
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (18 bp):
TTTATTTTTTATAATATT
Found at i:63170968 original size:83 final size:83
Alignment explanation
Indices: 63170815--63170968 Score: 195
Period size: 83 Copynumber: 1.9 Consensus size: 83
63170805 TTTTAAAATT
* *
63170815 ATATTTTAAATGTTTTATAATATCTGTTTATTCAAACTTTTTTTGAAAATTTATTTTTTGAAAAT
1 ATATTTTAAATGTTTTATAATATCTGTTTATTCAAACTTTTTTTGAAAATTTATTTTATGAAAAG
*
63170880 TATTTATTATTTTTTATA
66 CATTTATTATTTTTTATA
* * * ***
63170898 ATATTTTAATTTTTTTATAATATTTGTTTATTCAAACGTTTTTTATTTTAATTT-TTTTAT-AAA
1 ATATTTTAAATGTTTTATAATATCTGTTTATTCAAAC-TTTTTT-TGAAAATTTATTTTATGAAA
63170961 AGCATTTA
64 AGCATTTA
63170969 AAATTATAAG
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
83 43 0.72
84 11 0.18
85 6 0.10
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (83 bp):
ATATTTTAAATGTTTTATAATATCTGTTTATTCAAACTTTTTTTGAAAATTTATTTTATGAAAAG
CATTTATTATTTTTTATA
Found at i:63171111 original size:22 final size:20
Alignment explanation
Indices: 63171085--63171142 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 20
63171075 AACAAATATT
*
63171085 ATAAAACATTTAAAATATAATT
1 ATAAAA-ATTTAAAATA-AATA
*
63171107 TTAAAATATTATAAAATAAATA
1 ATAAAA-ATT-TAAAATAAATA
63171129 ATAAAAATTTAAAA
1 ATAAAAATTTAAAA
63171143 AAAAGATTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 5 0.16
21 3 0.10
22 16 0.52
23 7 0.23
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (20 bp):
ATAAAAATTTAAAATAAATA
Found at i:63171198 original size:13 final size:13
Alignment explanation
Indices: 63171182--63171207 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63171172 ATATTATAAA
63171182 AAATTTAAAATAT
1 AAATTTAAAATAT
63171195 AAATTTAAAATAT
1 AAATTTAAAATAT
63171208 TATAAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAATTTAAAATAT
Found at i:63171225 original size:22 final size:21
Alignment explanation
Indices: 63171177--63171225 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
63171167 AACCGATATT
63171177 ATAA-AAAATTTAAAATATAA
1 ATAATAAAATTTAAAATATAA
*
63171197 AT-TTAAAATATTATAAA-ATAA
1 ATAATAAAAT-TTA-AAATATAA
63171218 ATAATAAA
1 ATAATAAA
63171226 CAAATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
20 7 0.30
21 9 0.39
22 7 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAATAAAATTTAAAATATAA
Found at i:63171234 original size:92 final size:92
Alignment explanation
Indices: 63171035--63171237 Score: 293
Period size: 92 Copynumber: 2.2 Consensus size: 92
63171025 CTAAAATATT
* * *
63171035 ATAAACCAAATAATAAAAAAATTTAAAAAATGTTTGAATAAACAAATATTATAAAACATTTAAAA
1 ATAAA-CAAATAA-AAAAAAATTTAAAAAACGTTTCAATAAACAAATATTATAAAAAATTTAAAA
*
63171100 TATAATTTTAAAATATTATAAAATAAATA
64 TATAAATTTAAAATATTATAAAATAAATA
* **
63171129 ATAAA-AATTTAAAAAAAAGA-TTAAAAAACGTTTCAATAAACCGATATTATAAAAAATTTAAAA
1 ATAAACAA-ATAAAAAAAA-ATTTAAAAAACGTTTCAATAAACAAATATTATAAAAAATTTAAAA
63171192 TATAAATTTAAAATATTATAAAATAAATA
64 TATAAATTTAAAATATTATAAAATAAATA
63171221 ATAAACAAATAAAAAAA
1 ATAAACAAATAAAAAAA
63171238 GGAAAATGAC
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
92 87 0.89
93 6 0.06
94 5 0.05
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (92 bp):
ATAAACAAATAAAAAAAAATTTAAAAAACGTTTCAATAAACAAATATTATAAAAAATTTAAAATA
TAAATTTAAAATATTATAAAATAAATA
Found at i:63174008 original size:27 final size:26
Alignment explanation
Indices: 63173960--63174014 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
63173950 ATGATTTAGA
63173960 AATTAAAAATATTAATAAAATAAATTT
1 AATTAAAAATATTAATAAAAT-AATTT
* *
63173987 AATTAAAATTATTTAA-ATAATAATTT
1 AATTAAAAATA-TTAATAAAATAATTT
63174013 AA
1 AA
63174015 AAATAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.28
27 14 0.56
28 4 0.16
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (26 bp):
AATTAAAAATATTAATAAAATAATTT
Found at i:63174131 original size:24 final size:26
Alignment explanation
Indices: 63174095--63174144 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 26
63174085 AATTAAAAAT
*
63174095 ATTTAACTTTTACTAGTTTAT-TATA
1 ATTTAACTTTTACTAGTATATATATA
63174120 ATTTAA-TTTTACTAGTATATATATA
1 ATTTAACTTTTACTAGTATATATATA
63174145 TATTCTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (26 bp):
ATTTAACTTTTACTAGTATATATATA
Found at i:63174857 original size:28 final size:27
Alignment explanation
Indices: 63174787--63174857 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
63174777 ATAATTGATT
* * * *
63174787 TTAAATAAAAATATATTATTTAATGAA
1 TTAAATATAAATTTAATATATAATGAA
*
63174814 TT-AATATCAAAGTTAATATATAATCGAA
1 TTAAATAT-AAATTTAATATATAAT-GAA
63174842 TTAAATATAAATTTAA
1 TTAAATATAAATTTAA
63174858 AATACATATT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
26 4 0.11
27 14 0.40
28 12 0.34
29 5 0.14
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.39
Consensus pattern (27 bp):
TTAAATATAAATTTAATATATAATGAA
Found at i:63183597 original size:7 final size:7
Alignment explanation
Indices: 63183585--63183625 Score: 75
Period size: 7 Copynumber: 6.0 Consensus size: 7
63183575 AAAAAGAGGG
63183585 ATGAAAA
1 ATGAAAA
63183592 ATGAAAA
1 ATGAAAA
63183599 ATG-AAA
1 ATGAAAA
63183605 ATGAAAA
1 ATGAAAA
63183612 ATGAAAA
1 ATGAAAA
63183619 ATGAAAA
1 ATGAAAA
63183626 GTAATGACGG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.18
7 27 0.82
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
ATGAAAA
Found at i:63183605 original size:13 final size:14
Alignment explanation
Indices: 63183585--63183625 Score: 75
Period size: 13 Copynumber: 3.0 Consensus size: 14
63183575 AAAAAGAGGG
63183585 ATGAAAAATGAAAA
1 ATGAAAAATGAAAA
63183599 ATG-AAAATGAAAA
1 ATGAAAAATGAAAA
63183612 ATGAAAAATGAAAA
1 ATGAAAAATGAAAA
63183626 GTAATGACGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 13 0.50
14 13 0.50
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
ATGAAAAATGAAAA
Found at i:63183608 original size:20 final size:20
Alignment explanation
Indices: 63183585--63183625 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
63183575 AAAAAGAGGG
63183585 ATGAAAAATGAAAAATGAAA
1 ATGAAAAATGAAAAATGAAA
63183605 ATGAAAAATGAAAAATGAAA
1 ATGAAAAATGAAAAATGAAA
63183625 A
1 A
63183626 GTAATGACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (20 bp):
ATGAAAAATGAAAAATGAAA
Found at i:63185214 original size:175 final size:174
Alignment explanation
Indices: 63184836--63185442 Score: 1018
Period size: 175 Copynumber: 3.5 Consensus size: 174
63184826 ACAGATCAGT
* * * * *
63184836 GAAGAGTTCTAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTACCT
1 GAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGAAACAGATTGAAGCTAGTAATCCTATCT
*
63184901 CCCTGAGATTACAGTGGAG-TAGATTAAAATGAAGGATCTTATCTCTCTGAAGTTAAGTAGAGTA
66 CCCTGAGATTACAGTGGAGCGA-ATTAAAATGAAGGATCTTATCTCTCTGAAGTTAAGTAGAGTA
63184965 GATCGCATCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGACC
130 GATCGCATCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGACC
*
63185010 GAAGAATTTTAGATCTTATCTCCCTGAGATTCCAGCGAAACAGATTGAAGCTAGTAATCCTATCT
1 GAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGAAACAGATTGAAGCTAGTAATCCTATCT
*
63185075 CCCTGAGATTACAGTGGAGCGAATTAAAATGAAGGATCTTATCTCTCGGAAGTTATAGTAGAGTA
66 CCCTGAGATTACAGTGGAGCGAATTAAAATGAAGGATCTTATCTCTCTGAAGTTA-AGTAGAGTA
*
63185140 GATCGCATCAGGTCTTATCTTCCTAAGATTACAGTGGAATAGACC
130 GATCGCATCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGACC
*
63185185 GAAGAATTTTAGATCTTATCTCCCTGAGATTCCAGCGAAACAGATTGAAGCTAGTAATCCTATCT
1 GAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGAAACAGATTGAAGCTAGTAATCCTATCT
* *
63185250 CCCTGAGATTACAGTGGAGCGGATTAAAATGAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTA
66 CCCTGAGATTACAGTGGAGCGAATTAAAATGAAGGATCTTATCTCTCTGAAGTTA-AGTAGAGTA
* *
63185315 GATCGCATCAGGTCTTATCTTCTTGAGATTACAGTGGAATAGATC
130 GATCGCATCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGACC
* * * *
63185360 GAAAAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCT
1 GAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGAAACAGATTGAAGCTAGTAATCCTATCT
63185425 CCCTGAGATTACAGTGGA
66 CCCTGAGATTACAGTGGA
63185443 ATAGACCGAA
Statistics
Matches: 410, Mismatches: 21, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
174 110 0.27
175 300 0.73
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (174 bp):
GAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGAAACAGATTGAAGCTAGTAATCCTATCT
CCCTGAGATTACAGTGGAGCGAATTAAAATGAAGGATCTTATCTCTCTGAAGTTAAGTAGAGTAG
ATCGCATCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGACC
Found at i:63185293 original size:44 final size:44
Alignment explanation
Indices: 63184847--63186054 Score: 432
Period size: 44 Copynumber: 27.6 Consensus size: 44
63184837 AAGAGTTCTA
* *
63184847 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATT-GAA-GCTAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGC-AG
* * * * *
63184890 TAATCCTACCTCCCTGAGATTACAGTGGAGTAGATTAAAATGAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGCAG
* * * ***
63184935 GATCTTATCTCTCTGA-AGTTA-AGTAGAGTAGA-TCGCAT-CAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATGCAG
* ** ** **
63184976 G-TCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGAATTTTA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA-TGCAG
* * * * *
63185021 GATCTTATCTCCCTGAGATTCCAGCGAAACAGATT-GAA-GCTAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGC-AG
* * *
63185064 TAATCCTATCTCCCTGAGATTACAGTGGAGC-GAATTAAAATGAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTAAAATGCAG
* * * * * ***
63185109 GATCTTATCTCTCGGA-AGTTATAGTAGAGTAGA-TCGCAT-CAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATGCAG
* * ** ** **
63185151 G-TCTTATCTTCCTAAGATTACAGTGGAATAGACCGAAGAATTTTA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA-TGCAG
* * * * *
63185196 GATCTTATCTCCCTGAGATTCCAGCGAAACAGATT-GAA-GCTAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGC-AG
* * * *
63185239 TAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATGAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGCAG
** * * ***
63185284 GATCTTATCTCTTTGA-AGTTACAGTAGAGTAGA-TCGCAT-CAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATGCAG
* * ** * *
63185326 G-TCTTATCTTCTTGAGATTACAGTGGAATAGATCGAAAAATTTCA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGAT--TAAAA-TGCAG
* *
63185371 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATT-GAA-GCTAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGC-AG
* * ** ** *
63185414 TAATCCTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA-TGCAG
* ** * **
63185462 G-TCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAGAATTTTA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGAT-TAA-AA-TGCAG
* * * *
63185507 GATCTTATCTCCCTAAGATTATAGCGGAGCAGATT-GAA-GCTAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGC-AG
* * * *
63185550 TAATCCTATCTCCCTGAGATTACAGTTGAGC-GAATTAAAATGAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTAAAATGCAG
* * ** **
63185595 GATCTTATCTCTCTGA-AGTTACAGTAGAGTGGATT-GCAT-CAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATGCAG
* ** * *
63185637 G-TCTTATCTCCCTGAGATTACAATGGAATAGA-TAGAATTTCA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTA-AAATGCAG
* *
63185679 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATT-GAA-GCTAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGC-AG
* * *
63185722 TAATCCTATCTCCCTGAGATTACAGTGGAGC-GAATTAAAATGAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTAAAATGCAG
* * ** **
63185767 GATCTTATCTCTCTGA-AGTTACAGTAGAGTGGATT-GCAT-CAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATGCAG
** * *
63185809 G-TCTTATCTCCCTGAGATTACAGTGGAATAGA-TAGAATTTCA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTA-AAATGCAG
* * *
63185851 GATCTTATCTCCTTGAGATTACAGCGGAGCAGATT-GAA-GCTAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGC-AG
* * * ** *
63185894 TAATCCTATCTCCCTGAGATTACAGTGAAGCAGATTAAAATAAAT
1 -GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGCAG
* * ***
63185939 GATCTTATCTCACCTGA-AGTTACAGTAGAGTAGA-TCGCAT-CAG
1 GATCTTATCTC-CCTGAGA-TTACAGTGGAGCAGATTAAAATGCAG
* ** ** *
63185982 G-TCTTATCTCCCTGAAATTACAGTGGAATAGACCGAAGAATTTCA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA-TGCAG
*
63186027 GATCTTATCTTCCTGAGATTACAGTGGA
1 GATCTTATCTCCCTGAGATTACAGTGGA
63186055 ATGACCGAAG
Statistics
Matches: 851, Mismatches: 222, Indels: 180
0.68 0.18 0.14
Matches are distributed among these distances:
40 17 0.02
41 130 0.15
42 41 0.05
43 96 0.11
44 332 0.39
45 52 0.06
46 178 0.21
47 2 0.00
48 2 0.00
49 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (44 bp):
GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGCAG
Found at i:63185495 original size:136 final size:136
Alignment explanation
Indices: 63185322--63185575 Score: 463
Period size: 136 Copynumber: 1.9 Consensus size: 136
63185312 GTAGATCGCA
* *
63185322 TCAGGTCTTATCTTCTTGAGATTACAGTGGAATAGATCGAAAAATTTCAGATCTTATCTCCCTGA
1 TCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAAAATTTCAGATCTTATCTCCCTAA
63185387 GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAATAGACCGA
66 GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAATAGACCGA
63185452 AGAATT
131 AGAATT
* *
63185458 TCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAGAATTTTAGATCTTATCTCCCTAA
1 TCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAAAATTTCAGATCTTATCTCCCTAA
*
63185523 GATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
66 GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
63185576 TGAGCGAATT
Statistics
Matches: 113, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 113 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (136 bp):
TCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAAAATTTCAGATCTTATCTCCCTAA
GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAATAGACCGA
AGAATT
Found at i:63185713 original size:172 final size:172
Alignment explanation
Indices: 63185458--63186050 Score: 956
Period size: 172 Copynumber: 3.4 Consensus size: 172
63185448 CCGAAGAATT
* * *
63185458 TCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAGAATTTTAGATCTTATCTCCCTAA
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGAT---AGAATTTCAGATCTTATCTCCCTGA
*
63185523 GATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTTGAGCGAATTAA
63 GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTTGAGCGAATTAA
63185588 AATGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCA
128 AATGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCA
*
63185633 TCAGGTCTTATCTCCCTGAGATTACAATGGAATAGATAGAATTTCAGATCTTATCTCCCTGAGAT
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGATAGAATTTCAGATCTTATCTCCCTGAGAT
*
63185698 TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAAAAT
66 TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTTGAGCGAATTAAAAT
63185763 GAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCA
131 GAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCA
*
63185805 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGATAGAATTTCAGATCTTATCTCCTTGAGAT
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGATAGAATTTCAGATCTTATCTCCCTGAGAT
63185870 TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG-TGAAGC-AGATTAAA
66 TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTTG-AGCGA-ATTAAA
* * * * *
63185933 ATAAATGATCTTATCTCACCTGAAGTTACAGTAGAGTAGATCGCA
129 ATGAAGGATCTTATCTC-TCTGAAGTTACAGTAGAGTGGATTGCA
* * *
63185978 TCAGGTCTTATCTCCCTGAAATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTTCCTGA
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGA---TAGAATTTCAGATCTTATCTCCCTGA
63186043 GATTACAG
63 GATTACAG
63186051 TGGAATGACC
Statistics
Matches: 394, Mismatches: 18, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
171 2 0.01
172 267 0.68
173 59 0.15
175 35 0.09
176 31 0.08
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30
Consensus pattern (172 bp):
TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGATAGAATTTCAGATCTTATCTCCCTGAGAT
TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTTGAGCGAATTAAAAT
GAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCA
Found at i:63186221 original size:50 final size:49
Alignment explanation
Indices: 63186148--63186530 Score: 235
Period size: 50 Copynumber: 7.7 Consensus size: 49
63186138 GCAGTGGAGC
* * *
63186148 AGATTAAAGCCACATCGGTGAATCTTGTTTCTCCAACATTGCAGTCAAAA
1 AGATTAAAGCCACATCGGCGAATCTTGCTTC-CCGACATTGCAGTCAAAA
* * * * ** ** **
63186198 AGATTAAAGCCACACCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAGC
1 AGATTAAAGCCACATCGGCGAATCTTGCTTCCC-GACATTGCAGTCAAAA
* * *
63186248 AGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGCGAATCTTGCTT-CCCGACATTGCAGTCAAAA
* * * * ** * ** **
63186298 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTACAGTGGAGC
1 AGATTAAAGCCACATCGGCGAATCTTGCTTCCC-GACATTGCAGTCAAAA
* * * *
63186348 AGATTAAAGCCACATTGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGCGAATCTTGCTT-CCCGACATTGCAGTCAAAA
* * * * * ** ** *
63186398 AGATTAAAGCCCCAGCGGCGAATCCTACTTCCCTAGCGGTGCAGTGGAAC
1 AGATTAAAGCCACATCGGCGAATCTTGCTTCCCGA-CATTGCAGTCAAAA
* * ** * * *
63186448 AGATTGAAGCCACATTGGTAAATCTCGCTTCCCCGACATTACAGTTAAAA
1 AGATTAAAGCCACATCGGCGAATCTTGCTT-CCCGACATTGCAGTCAAAA
* * * *
63186498 AGATTAAAGCCCCAGCGGCGAATCCTACTTCCC
1 AGATTAAAGCCACATCGGCGAATCTTGCTTCCC
63186531 TGGCGGTGCA
Statistics
Matches: 237, Mismatches: 90, Indels: 13
0.70 0.26 0.04
Matches are distributed among these distances:
49 12 0.05
50 215 0.91
51 10 0.04
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (49 bp):
AGATTAAAGCCACATCGGCGAATCTTGCTTCCCGACATTGCAGTCAAAA
Found at i:63186292 original size:100 final size:100
Alignment explanation
Indices: 63186119--63186606 Score: 690
Period size: 100 Copynumber: 4.9 Consensus size: 100
63186109 AGAATTACAG
* ** * * * *
63186119 ATCCTACTTCACTGATGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGTTTCTCCAA
1 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
* *
63186184 CATTGCAGTCAAAAAGATTAAAGCCACACCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
63186219 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
1 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
63186284 CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
* *
63186319 ATCCTACTTCCCTGGCGGTACAGTGGAGCAGATTAAAGCCACATTGGTGAATCTCGCTTCCCCGA
1 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
*
63186384 CATTGCAGTTAAAAAGATTAAAGCCCCAGCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
* * * * *
63186419 ATCCTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCCACATTGGTAAATCTCGCTTCCCCGA
1 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
* *
63186484 CATTACAGTTAAAAAGATTAAAGCCCCAGCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
* * * * * * ** *
63186519 ATCCTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCTCGA
1 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
**
63186584 CATCACAGTTAAACAA-ATTAAAG
66 CATTGCAGTTAAA-AAGATTAAAG
63186607 TTATGGGTTA
Statistics
Matches: 358, Mismatches: 29, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
100 356 0.99
101 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.23
Consensus pattern (100 bp):
ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
Found at i:63186552 original size:50 final size:50
Alignment explanation
Indices: 63186198--63186579 Score: 293
Period size: 50 Copynumber: 7.6 Consensus size: 50
63186188 GCAGTCAAAA
* *
63186198 AGATTAAAGCCACACCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAGC
1 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * ** ** *
63186248 AGATTAAAGCCACATCGGTGAAT-CTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCCT-ACTTCCCTGGCGGTGCAGTGGAAC
* *
63186298 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTACAGTGGAGC
1 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
** * * * * ** ** *
63186348 AGATTAAAGCCACATTGGTGAAT-CTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCCT-ACTTCCCTGGCGGTGCAGTGGAAC
* *
63186398 AGATTAAAGCCCCAGCGGCGAATCCTACTTCCCTAGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
* ** ** * * * ** * ** *
63186448 AGATTGAAGCCACATTGGTAAAT-CTCGCTTCCCCGACATTACAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCCT-ACTTCCCTGGCGGTGCAGTGGAAC
*
63186498 AGATTAAAGCCCCAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
* * * * *
63186548 AGATTGAAGCTACAACAGCGAATCTTACTTCC
1 AGATTAAAGCCACAGCGGCGAATCCTACTTCC
63186580 TCGACATCAC
Statistics
Matches: 240, Mismatches: 86, Indels: 12
0.71 0.25 0.04
Matches are distributed among these distances:
49 6 0.03
50 228 0.95
51 6 0.03
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (50 bp):
AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
Found at i:63187193 original size:17 final size:18
Alignment explanation
Indices: 63187171--63187211 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
63187161 AAACAGCAAG
*
63187171 AGAAAAGCAG-AGAAAAA
1 AGAAAAACAGAAGAAAAA
63187188 AGAAAAACAGAAAGAAAAA
1 AGAAAAACAG-AAGAAAAA
63187207 AGAAA
1 AGAAA
63187212 TTTGTATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
19 12 0.57
ACGTcount: A:0.76, C:0.05, G:0.20, T:0.00
Consensus pattern (18 bp):
AGAAAAACAGAAGAAAAA
Found at i:63188368 original size:27 final size:26
Alignment explanation
Indices: 63188338--63188399 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
63188328 ATAAGACTAA
* *
63188338 TTATTTTAACTTACTTTATATATTATT
1 TTATTTTAACTTACTTTACATATTA-C
* *
63188365 TTATTTTAAGTTATTTTACATATTAC
1 TTATTTTAACTTACTTTACATATTAC
63188391 TTATTTTAA
1 TTATTTTAA
63188400 AATTAACCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (26 bp):
TTATTTTAACTTACTTTACATATTAC
Found at i:63189852 original size:21 final size:21
Alignment explanation
Indices: 63189828--63189891 Score: 58
Period size: 21 Copynumber: 3.1 Consensus size: 21
63189818 CTTAGTTTCA
* *
63189828 TTGTTGTTTTGAATCGATTGT
1 TTGTTATTTTAAATCGATTGT
* *
63189849 TTGTTATTTTAAATTGATTCT
1 TTGTTATTTTAAATCGATTGT
* **
63189870 CTG-CCTTTTAAATCGATTGT
1 TTGTTATTTTAAATCGATTGT
63189890 TT
1 TT
63189892 ACTATTTTGA
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
20 14 0.42
21 19 0.58
ACGTcount: A:0.19, C:0.09, G:0.16, T:0.56
Consensus pattern (21 bp):
TTGTTATTTTAAATCGATTGT
Found at i:63206066 original size:14 final size:14
Alignment explanation
Indices: 63206047--63206073 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63206037 GGCTCACAAA
63206047 AAAATAATAAAACC
1 AAAATAATAAAACC
63206061 AAAATAATAAAAC
1 AAAATAATAAAAC
63206074 AAAGTCCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAATAATAAAACC
Found at i:63206202 original size:19 final size:19
Alignment explanation
Indices: 63206178--63206314 Score: 166
Period size: 19 Copynumber: 7.0 Consensus size: 19
63206168 AATCTTCAAG
*
63206178 GATATGCAATCTTAGACAT
1 GATATGCAATCTTAGATAT
*
63206197 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
63206216 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
63206235 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
63206254 GATGTGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
63206273 GATATTCAATATTCGAAGATAT
1 GATATGCAATCTT---AGATAT
* *
63206295 GATTTTGTAATCTTAGATAT
1 GA-TATGCAATCTTAGATAT
63206315 TTAATTTGTA
Statistics
Matches: 101, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
19 80 0.79
20 6 0.06
22 8 0.08
23 7 0.07
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:63206523 original size:21 final size:20
Alignment explanation
Indices: 63206485--63206524 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
63206475 CTTACTGTTT
63206485 TTTTTTATCTTTTTCGATTA
1 TTTTTTATCTTTTTCGATTA
63206505 TTTTTTA-CTTATTTACGATT
1 TTTTTTATCTT-TTT-CGATT
63206525 TTAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.17
20 10 0.56
21 5 0.28
ACGTcount: A:0.17, C:0.10, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTTTATCTTTTTCGATTA
Found at i:63206747 original size:3 final size:3
Alignment explanation
Indices: 63206739--63206807 Score: 52
Period size: 3 Copynumber: 22.7 Consensus size: 3
63206729 ACTAATTAAT
* * * *
63206739 TTA TTA TTA TTA TTA TTTA TTA ATC CTA TTA TTA TT- TGTA CTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
*
63206785 TTG TTA TTA TTA TT- TTCA TTA TT
1 TTA TTA TTA TTA TTA TT-A TTA TT
63206808 TCTTCTTATC
Statistics
Matches: 52, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
2 3 0.06
3 44 0.85
4 5 0.10
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:63206754 original size:12 final size:11
Alignment explanation
Indices: 63206733--63206807 Score: 60
Period size: 12 Copynumber: 6.3 Consensus size: 11
63206723 GTTTTTACTA
*
63206733 ATTAATTTATT
1 ATTATTTTATT
63206744 ATTATTATTATTT
1 ATTATT-TTA-TT
**
63206757 ATTAATCCTATT
1 ATT-ATTTTATT
*
63206769 ATTATTTGTACT
1 ATTATTT-TATT
63206781 ATTATTGTTATT
1 ATTATT-TTATT
63206793 ATTATTTTCATT
1 ATTATTTT-ATT
63206805 ATT
1 ATT
63206808 TCTTCTTATC
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
11 9 0.18
12 32 0.63
13 8 0.16
14 2 0.04
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:63215226 original size:155 final size:154
Alignment explanation
Indices: 63214944--63215234 Score: 537
Period size: 155 Copynumber: 1.9 Consensus size: 154
63214934 CAATGGGTGA
*
63214944 AAGGTGCAAGTATGAAACTTCAGCTCATCTAGGCCTTCTCCAACCCTTAATCATTCCTACCAAGG
1 AAGGTGCAAGTATGAAACTTCAGCTCATCTAGGCCTTCTCCAACCCTTAACCATTCCTACCAAGG
*
63215009 CTTGGTCTGAAGTTAGCATGAACTTCATTGAAGACCTCCCTTCTTCCAAGGGAAATGACACAATT
66 CTTGGTCTGAAGTTAGCATGAACGTCATTGAAGACCTCCCTTCTTCCAAGGGAAATGACACAATT
63215074 CTGGTGNAGAGTGTGCAGTGTGTCG
131 CTGGTG-AGAGTGTGCAGTGTGTCG
63215099 AAGGTGCAAGTATGAAACTTCAGCTCATCTAGGCCTTCTCCAACCCTTAACCATTCCTACCAAGG
1 AAGGTGCAAGTATGAAACTTCAGCTCATCTAGGCCTTCTCCAACCCTTAACCATTCCTACCAAGG
* *
63215164 CTTGGTCTGAAGTTAGCATGAACGTCATTGAAGACCTCCCTTCTTCCAAGGGCAATGGCACAATT
66 CTTGGTCTGAAGTTAGCATGAACGTCATTGAAGACCTCCCTTCTTCCAAGGGAAATGACACAATT
63215229 CTGGTG
131 CTGGTG
63215235 GTTGTGGACC
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
155 132 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (154 bp):
AAGGTGCAAGTATGAAACTTCAGCTCATCTAGGCCTTCTCCAACCCTTAACCATTCCTACCAAGG
CTTGGTCTGAAGTTAGCATGAACGTCATTGAAGACCTCCCTTCTTCCAAGGGAAATGACACAATT
CTGGTGAGAGTGTGCAGTGTGTCG
Found at i:63217834 original size:384 final size:383
Alignment explanation
Indices: 63217119--63217872 Score: 1078
Period size: 384 Copynumber: 2.0 Consensus size: 383
63217109 AAACAAAGTT
*
63217119 TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCTACATAGGTATGTTCAATATTCT
1 TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCCACATAGGTATGTTCAATATTCT
* * * *
63217184 TTTTTCTAATTTTTAAAATATATTTGGGGAACCGTATCCTCGTATCCATTTTTCAATGTGTTGGA
66 ATTTTCTAATTTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGGA
** * * * * *
63217249 TATGGGTGTTGGGCCCAACACACTTCAAAGAAACTGAAAAGTCTGAGCAACATAGCAAACTACAA
131 TATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAACTCTGAGCAACATACCAAACTACAA
* * *
63217314 CACCAGTTATGACATCACATAAACGAAGTTGAATCTAAAACGGCACCATTGACTTCTCATGGAAC
196 CACCAGTTATGACATCACATAAACGAAGTTGAATCTAAAACAGCAACATTGACTTCTCATGAAAC
* * *
63217379 ATAGGAGAAAAAGAATAGTGAAAGAGAAAGTACATAATTAATCAAATAATTAGCAATTACATATC
261 ATAAGAGAAAAAGAATAGT-AAAGAGAAAGGACATAATTAATAAAATAATTAGCAATTACATATC
*
63217444 AGTTTCTTCTTTTCTTTGTACTGTGAAAAGCCCATGCAGACAAAGCTTATATCCACATC
325 AGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGCTTATATCCACATC
*
63217503 TAAACCAGGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCCACATAGGTATGTTC-A-A-T-T
1 TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCCACATAGGTATGTTCAATATTCT
* * *
63217564 ATTTTCTAAATTTTT-AAATATATTTGGGGAACCATATGCTTGTATCCATGTCTGAATGTGTTGG
66 ATTTTCT-AATTTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGG
* *
63217628 ATATGGGTGCAGGACAC-A-ACACTTCAAAGAAAATGAAAACT-TGGCGCAACATACCAAACTCC
130 ATATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAACTCT-GAGCAACATACCAAACTAC
*
63217690 AACACCAGTTATGACATCACATAAATGAAGTTGAAATCTAAAACAGCAACATTGACTTCTCATGA
194 AACACCAGTTATGACATCACATAAACGAAGTTG-AATCTAAAACAGCAACATTGACTTCTCATGA
*
63217755 AACATAAGAGAACAAA-AATAGT-AAGAGAAAGGATATAATTTTAATAAAATAATTAGCTATCAT
258 AACATAAGAGAA-AAAGAATAGTAAAGAGAAAGGACATAA--TTAATAAAATAATTAGC-A--A-
*
63217818 TTTACATATTAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAG
316 -TTACATATCAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAG
63217873 TAGAAAGCTT
Statistics
Matches: 331, Mismatches: 28, Indels: 22
0.87 0.07 0.06
Matches are distributed among these distances:
377 15 0.05
378 69 0.21
379 62 0.19
380 67 0.20
381 8 0.02
382 2 0.01
383 1 0.00
384 107 0.32
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (383 bp):
TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCCACATAGGTATGTTCAATATTCT
ATTTTCTAATTTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGGA
TATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAACTCTGAGCAACATACCAAACTACAA
CACCAGTTATGACATCACATAAACGAAGTTGAATCTAAAACAGCAACATTGACTTCTCATGAAAC
ATAAGAGAAAAAGAATAGTAAAGAGAAAGGACATAATTAATAAAATAATTAGCAATTACATATCA
GTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGCTTATATCCACATC
Found at i:63220358 original size:24 final size:24
Alignment explanation
Indices: 63220326--63220379 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
63220316 CAACATACTG
*
63220326 TATCCAAAAGAAAGGTCACAAGTC
1 TATCCAAAAGAAAGGTCACAAGAC
63220350 TATCCAAAAGAAAGGTCACAAGAC
1 TATCCAAAAGAAAGGTCACAAGAC
63220374 TATCCA
1 TATCCA
63220380 CAGTATTGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.46, C:0.22, G:0.15, T:0.17
Consensus pattern (24 bp):
TATCCAAAAGAAAGGTCACAAGAC
Found at i:63220731 original size:62 final size:62
Alignment explanation
Indices: 63220610--63220734 Score: 180
Period size: 62 Copynumber: 2.0 Consensus size: 62
63220600 ATATTATTGT
* * ** *
63220610 ACTTTACTTTATTAAAGTATGAGTGAGTTATGGTTTATTAGATGAATCATCGTCCTTTATAA
1 ACTTTACTTTATTAAAGTATGAGTGAGTCATAGTTTACGAGATGAATCATCATCCTTTATAA
*
63220672 ACTTTACTTTATTAAAGTATGAGTGAGTCATAGTTT-CGAGATGAGTCATCATCCTTTTATAA
1 ACTTTACTTTATTAAAGTATGAGTGAGTCATAGTTTACGAGATGAATCATCATCC-TTTATAA
63220734 A
1 A
63220735 TCATTGAACT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
61 14 0.25
62 42 0.75
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (62 bp):
ACTTTACTTTATTAAAGTATGAGTGAGTCATAGTTTACGAGATGAATCATCATCCTTTATAA
Found at i:63221377 original size:286 final size:286
Alignment explanation
Indices: 63220865--63221437 Score: 1110
Period size: 286 Copynumber: 2.0 Consensus size: 286
63220855 CTCTCAGATG
63220865 TAAGATATCGAGTTCTGAAAATAAAAATATTAGTGTGATTTTATAAAATAGCTTGCTAAAACTCT
1 TAAGATATCGAGTTCTGAAAATAAAAATATTAGTGTGATTTTATAAAATAGCTTGCTAAAACTCT
*
63220930 CTGTTCTCTTCCTTCTTGATTATGGTATATTAGTAAAAGAAAATCTCTCGTGAGTTTAGAAGTAT
66 CTGTTCTCTTCCTTCTTGATTATGGTATATTAGTAAAAGAAAATCTCCCGTGAGTTTAGAAGTAT
63220995 GCACTGTGCTTGCCATATAATGGATCCTGCACATCAGAAACTAAGCTTAGACCAGGTATACTAAA
131 GCACTGTGCTTGCCATATAATGGATCCTGCACATCAGAAACTAAGCTTAGACCAGGTATACTAAA
63221060 CTCAGATGAGTTTGAAGAAGTAGTCTGAATTAATAATATTAACAGCTAAAAGGCAGTGTCTGTTT
196 CTCAGATGAGTTTGAAGAAGTAGTCTGAATTAATAATATTAACAGCTAAAAGGCAGTGTCTGTTT
63221125 AAGTGGCCAAGAGGAGAAGGCCTTGT
261 AAGTGGCCAAGAGGAGAAGGCCTTGT
*
63221151 TAAGATATCGAGTTCTGAAAATAAAAATATTAGTGTGATTTTATAAAATGGCTTGCTAAAACTCT
1 TAAGATATCGAGTTCTGAAAATAAAAATATTAGTGTGATTTTATAAAATAGCTTGCTAAAACTCT
63221216 CTGTTCTCTTCCTTCTTGATTATGGTATATTAGTAAAAGAAAATCTCCCGTGAGTTTAGAAGTAT
66 CTGTTCTCTTCCTTCTTGATTATGGTATATTAGTAAAAGAAAATCTCCCGTGAGTTTAGAAGTAT
*
63221281 GCACTGTGCTTGCCATATAATGGATCCTGCACATCAGAAACTAAGTTTAGACCAGGTATACTAAA
131 GCACTGTGCTTGCCATATAATGGATCCTGCACATCAGAAACTAAGCTTAGACCAGGTATACTAAA
*
63221346 CTCAGATGAGTTTGAAGAAGTAGTCTGAATTAATGATATTAACAGCTAAAAGGCAGTGTCTGTTT
196 CTCAGATGAGTTTGAAGAAGTAGTCTGAATTAATAATATTAACAGCTAAAAGGCAGTGTCTGTTT
63221411 AAGTGGCCAAGAGGAGAAGGCCTTGT
261 AAGTGGCCAAGAGGAGAAGGCCTTGT
63221437 T
1 T
63221438 TTGGCATAGC
Statistics
Matches: 283, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
286 283 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (286 bp):
TAAGATATCGAGTTCTGAAAATAAAAATATTAGTGTGATTTTATAAAATAGCTTGCTAAAACTCT
CTGTTCTCTTCCTTCTTGATTATGGTATATTAGTAAAAGAAAATCTCCCGTGAGTTTAGAAGTAT
GCACTGTGCTTGCCATATAATGGATCCTGCACATCAGAAACTAAGCTTAGACCAGGTATACTAAA
CTCAGATGAGTTTGAAGAAGTAGTCTGAATTAATAATATTAACAGCTAAAAGGCAGTGTCTGTTT
AAGTGGCCAAGAGGAGAAGGCCTTGT
Found at i:63221738 original size:17 final size:17
Alignment explanation
Indices: 63221713--63221747 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
63221703 CACGTCATAT
63221713 TTACACTTTCATTTTGG
1 TTACACTTTCATTTTGG
*
63221730 TTACGCTTTCATTTTGG
1 TTACACTTTCATTTTGG
63221747 T
1 T
63221748 CACCCCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.17, G:0.14, T:0.54
Consensus pattern (17 bp):
TTACACTTTCATTTTGG
Found at i:63222644 original size:19 final size:18
Alignment explanation
Indices: 63222605--63222645 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
63222595 TTCGATGTAC
*
63222605 TATTTTTAAATTTATTGA
1 TATTTTTAAATTTATTCA
*
63222623 TATTTTTAAATATTTTTCA
1 TATTTTTAAAT-TTATTCA
63222642 TATT
1 TATT
63222646 CAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TATTTTTAAATTTATTCA
Found at i:63225967 original size:19 final size:19
Alignment explanation
Indices: 63225943--63225983 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
63225933 TATTTTAAAG
63225943 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
63225962 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
63225981 TTA
1 TTA
63225984 GAATAAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (19 bp):
TTATTTAGGTAGATAAATC
Found at i:63237522 original size:7 final size:7
Alignment explanation
Indices: 63237512--63237541 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
63237502 TTTAAATGTC
63237512 TTTTATT
1 TTTTATT
63237519 TTTTATT
1 TTTTATT
63237526 TTATTATT
1 TT-TTATT
63237534 TTTTATT
1 TTTTATT
63237541 T
1 T
63237542 GGGCAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTATT
Found at i:63247257 original size:107 final size:109
Alignment explanation
Indices: 63247111--63247344 Score: 323
Period size: 109 Copynumber: 2.2 Consensus size: 109
63247101 TTCCTTTTGG
* * *
63247111 CATATTCTCAACATAAAATGCTCATTTATATTTACATTTACTTTTCCTA-TA-ATATATTTGTGG
1 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
** * *
63247174 AAAGTAATGGCATTTGGTCATTGAAATTAGTGGCAAATAGTGTT
66 AAAGTAACCGCATTTGGTCATTCAAATTAGTGGCAAATAATGTT
63247218 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
1 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
* * * * *
63247283 AAGGTAGCCGCATTTGGTGATTCAACTTAGTGGTAAATAATGTT
66 AAAGTAACCGCATTTGGTCATTCAAATTAGTGGCAAATAATGTT
63247327 CATAGTT-TTAAAA-AAAAT
1 CATA-TTCTTAAAATAAAAT
63247345 AATATTATTA
Statistics
Matches: 112, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
107 46 0.41
108 7 0.06
109 57 0.51
110 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (109 bp):
CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
AAAGTAACCGCATTTGGTCATTCAAATTAGTGGCAAATAATGTT
Found at i:63249219 original size:107 final size:109
Alignment explanation
Indices: 63249073--63249306 Score: 323
Period size: 109 Copynumber: 2.2 Consensus size: 109
63249063 TTCCTTTTGG
* * *
63249073 CATATTCTCAACATAAAATGCTCATTTATATTTACATTTACTTTTCCTA-TA-ATATATTTGTGG
1 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
** * *
63249136 AAAGTAATGGCATTTGGTCATTGAAATTAGTGGCAAATAGTGTT
66 AAAGTAACCGCATTTGGTCATTCAAATTAGTGGCAAATAATGTT
63249180 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
1 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
* * * * *
63249245 AAGGTAGCCGCATTTGGTGATTCAACTTAGTGGTAAATAATGTT
66 AAAGTAACCGCATTTGGTCATTCAAATTAGTGGCAAATAATGTT
63249289 CATAGTT-TTAAAA-AAAAT
1 CATA-TTCTTAAAATAAAAT
63249307 AATATTATTA
Statistics
Matches: 112, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
107 46 0.41
108 7 0.06
109 57 0.51
110 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (109 bp):
CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
AAAGTAACCGCATTTGGTCATTCAAATTAGTGGCAAATAATGTT
Found at i:63256220 original size:3 final size:3
Alignment explanation
Indices: 63256212--63256246 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
63256202 CAAAATTTAA
63256212 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
63256247 ACATACACTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:63260967 original size:29 final size:30
Alignment explanation
Indices: 63260927--63260985 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
63260917 TCCCATTAAG
*
63260927 TTTTAGGAG-TTTAATTGAA-ATTTTAAAAA
1 TTTTAGGAGTTTTAA-TGAATATTCTAAAAA
63260956 TTTTAAGG-GTTTTAATGAATATTCTAAAAA
1 TTTT-AGGAGTTTTAATGAATATTCTAAAAA
63260986 AATTTGACGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.44
Consensus pattern (30 bp):
TTTTAGGAGTTTTAATGAATATTCTAAAAA
Found at i:63261877 original size:19 final size:19
Alignment explanation
Indices: 63261853--63261890 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
63261843 TTCCCTTTTA
63261853 CTAAAAAATAAAATTAATT
1 CTAAAAAATAAAATTAATT
*
63261872 CTAAAAAATATAATTAATT
1 CTAAAAAATAAAATTAATT
63261891 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
CTAAAAAATAAAATTAATT
Found at i:63262020 original size:30 final size:30
Alignment explanation
Indices: 63261986--63262055 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 30
63261976 AGGTACAACC
* * *
63261986 AAAATAAAAACTTATTAAAGTTAGGTGACT
1 AAAATGAAAACTTATTAAAGTTAAGTAACT
63262016 AAAATGAAAACTTATTAAAGTTAAGTAACT
1 AAAATGAAAACTTATTAAAGTTAAGTAACT
63262046 AAAATGAAAA
1 AAAATGAAAA
63262056 TTGTTGTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.56, C:0.06, G:0.11, T:0.27
Consensus pattern (30 bp):
AAAATGAAAACTTATTAAAGTTAAGTAACT
Found at i:63263146 original size:42 final size:40
Alignment explanation
Indices: 63263084--63263208 Score: 126
Period size: 42 Copynumber: 3.1 Consensus size: 40
63263074 CCTCCCCCTC
* *
63263084 ATTATCGTCCTGAGCAACACTTCGGTCACGGTTCCCTTGAG
1 ATTATC-TCTTGAGCAACACTTCGATCACGGTTCCCTTGAG
* * *
63263125 AGTTATCATCTTGAGTAACACTTTGATCGCGGTTCCCTTGAG
1 A-TTATC-TCTTGAGCAACACTTCGATCACGGTTCCCTTGAG
* * * * *
63263167 AAT-TCTCTGGAGCAACACCTCGCTCACGGTTCCCTCGAG
1 ATTATCTCTTGAGCAACACTTCGATCACGGTTCCCTTGAG
63263206 ATT
1 ATT
63263209 TTCGGAAATA
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
39 29 0.43
40 2 0.03
41 2 0.03
42 35 0.51
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
ATTATCTCTTGAGCAACACTTCGATCACGGTTCCCTTGAG
Found at i:63263197 original size:39 final size:42
Alignment explanation
Indices: 63263095--63263206 Score: 122
Period size: 39 Copynumber: 2.7 Consensus size: 42
63263085 TTATCGTCCT
* * *
63263095 GAGCAACACTTCGGTCACGGTTCCCTTGAGAGTTATCATCTT
1 GAGCAACACTTCGATCACGGTTCCCTTGAGAGATATCATCTG
* * *
63263137 GAGTAACACTTTGATCGCGGTTCCCTTGAGA-AT-TC-TCTG
1 GAGCAACACTTCGATCACGGTTCCCTTGAGAGATATCATCTG
* * *
63263176 GAGCAACACCTCGCTCACGGTTCCCTCGAGA
1 GAGCAACACTTCGATCACGGTTCCCTTGAGA
63263207 TTTTCGGAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
39 28 0.48
40 2 0.03
41 1 0.02
42 27 0.47
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (42 bp):
GAGCAACACTTCGATCACGGTTCCCTTGAGAGATATCATCTG
Found at i:63263535 original size:22 final size:22
Alignment explanation
Indices: 63263507--63263553 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
63263497 ACACCATCAT
63263507 TCATAGGTAACTCATTCCAAAA
1 TCATAGGTAACTCATTCCAAAA
63263529 TCATAGGTAACTCATTCCAAAA
1 TCATAGGTAACTCATTCCAAAA
63263551 TCA
1 TCA
63263554 AATTCAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (22 bp):
TCATAGGTAACTCATTCCAAAA
Found at i:63265403 original size:36 final size:36
Alignment explanation
Indices: 63265351--63265549 Score: 131
Period size: 36 Copynumber: 5.6 Consensus size: 36
63265341 TGAACATTCG
*
63265351 GGTGACTTTTGC-TGGTCCCATGAATTATTCATTGTA
1 GGTGACTTTT-CTTGGTCCCAAGAATTATTCATTGTA
*
63265387 GGTGACTTTTCTTGGTCCCAAGAACTA-T--TTGCT-
1 GGTGACTTTTCTTGGTCCCAAGAATTATTCATTG-TA
* * * ****
63265420 GGTGGCTTTTGTTGATCCCAAGAATTATTTGCCGTA
1 GGTGACTTTTCTTGGTCCCAAGAATTATTCATTGTA
* * * * * ** *
63265456 GATGATTTTTGC-CGATCCCAAGAACTATTTGTTGCA
1 GGTGACTTTT-CTTGGTCCCAAGAATTATTCATTGTA
* * *
63265492 GGTGACTTTTGTTGGTCCCAAGCATTATTCATTGTC
1 GGTGACTTTTCTTGGTCCCAAGAATTATTCATTGTA
* *
63265528 TGTGACTTTTGTTGGTCCCAAG
1 GGTGACTTTTCTTGGTCCCAAG
63265550 CACTATTCTT
Statistics
Matches: 126, Mismatches: 29, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
33 26 0.21
34 2 0.02
35 3 0.02
36 95 0.75
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (36 bp):
GGTGACTTTTCTTGGTCCCAAGAATTATTCATTGTA
Found at i:63266305 original size:153 final size:153
Alignment explanation
Indices: 63266122--63266411 Score: 463
Period size: 153 Copynumber: 1.9 Consensus size: 153
63266112 TTTTGGAGAG
* * * *
63266122 ACATCTTGTGATTTAGATTTGCTCATCCCCCAATCAGACCACTCGCTTTGCTTCTTTGAACCGGA
1 ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGAACACTCACTTTGCTTCTTCGAACCGGA
* * *
63266187 TGCAGCTGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATGCAGACAAGGCATCCCAAC
66 TGCAGCAGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATCCAGACAAAGCATCCCAAC
63266252 CAACATCCACTTTTGGAGAGACA
131 CAACATCCACTTTTGGAGAGACA
* * * *
63266275 ACATCTTGTGATTTAGATTTGCTCGCCCCCCAATCAGAACACTCATTTTGCTTCTTCGAACTGGT
1 ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGAACACTCACTTTGCTTCTTCGAACCGGA
* *
63266340 TGCAGCAGCTGCAAATTTGTCACCATCCTCTGCATTTTTATTCCATCCAGACAAAGCATCCCAAC
66 TGCAGCAGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATCCAGACAAAGCATCCCAAC
63266405 CAACATC
131 CAACATC
63266412 TTGTGAGTTA
Statistics
Matches: 124, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
153 124 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (153 bp):
ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGAACACTCACTTTGCTTCTTCGAACCGGA
TGCAGCAGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATCCAGACAAAGCATCCCAAC
CAACATCCACTTTTGGAGAGACA
Found at i:63266455 original size:132 final size:129
Alignment explanation
Indices: 63266273--63266541 Score: 394
Period size: 132 Copynumber: 2.1 Consensus size: 129
63266263 TTTGGAGAGA
* * * *
63266273 CAACATCTTGTGATTTAGATTTGCTCGCCCCCCAATCAGAACACTCATTTTGCTTCTTCGAACTG
1 CAACATCTTGTGAGTTAGATTTGCTCGCACCCCAACCAGAACACTCATTTTGCTTCTCCGAACTG
* * * *
63266338 GTTGCAGCAGCTGCAAATTTGTCACCATCCTCTGCATTTTTATTCCATCCAGACAAAGCATCCCA
66 GTCGCAGCAGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAG---AAGCATCCCA
63266403 AC
128 AC
* *
63266405 CAACATCTTGTGAGTTAGATTTGCTTGCACCCCAACCAGACCACTCATTTTGCTTCTCCGAACTG
1 CAACATCTTGTGAGTTAGATTTGCTCGCACCCCAACCAGAACACTCATTTTGCTTCTCCGAACTG
* * *
63266470 GTCGTAGCTGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAGATGCATCCCAAC
66 GTCGCAGCAGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAGAAGCATCCCAAC
63266534 CAACATCT
1 CAACATCT
63266542 GACACCTTCT
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
129 19 0.15
132 105 0.85
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.30
Consensus pattern (129 bp):
CAACATCTTGTGAGTTAGATTTGCTCGCACCCCAACCAGAACACTCATTTTGCTTCTCCGAACTG
GTCGCAGCAGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAGAAGCATCCCAAC
Found at i:63278556 original size:18 final size:19
Alignment explanation
Indices: 63278533--63278568 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
63278523 TATTTAATAA
63278533 TATTTTTATC-TCAAAAAG
1 TATTTTTATCTTCAAAAAG
*
63278551 TATTTTTTTCTTCAAAAA
1 TATTTTTATCTTCAAAAA
63278569 AATACTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.50
Consensus pattern (19 bp):
TATTTTTATCTTCAAAAAG
Found at i:63280679 original size:22 final size:22
Alignment explanation
Indices: 63280651--63280699 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
63280641 AAAAAGGAAA
* *
63280651 TAGCAAGAAAATAGTAAAAAAG
1 TAGCAAGAAAACAATAAAAAAG
63280673 TAGCAAGAAAACAATAAAAAAG
1 TAGCAAGAAAACAATAAAAAAG
63280695 TAGCA
1 TAGCA
63280700 TATTTTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.63, C:0.08, G:0.16, T:0.12
Consensus pattern (22 bp):
TAGCAAGAAAACAATAAAAAAG
Found at i:63291949 original size:28 final size:27
Alignment explanation
Indices: 63291911--63292039 Score: 86
Period size: 26 Copynumber: 4.4 Consensus size: 27
63291901 AATAAACACC
63291911 AAAAATGTATTTTAAAAATAAAAAAAATT
1 AAAAA-GTATTTTAAAAATAAAAAAAA-T
63291940 AAAAAGTATTTTAAAAATATTTTAAATTTTAAAAAAT
1 AAAAAGTATTTT-AAAA-A---TAAA----AAA-AAT
* *
63291977 AAAAAAAGTATTTTAAAATTAAAAATAA-
1 --AAAAAGTATTTTAAAAATAAAAAAAAT
63292005 AAAAAGTATTTTAAAAAT--AAAAAAT
1 AAAAAGTATTTTAAAAATAAAAAAAAT
63292030 AAAAA-TATTT
1 AAAAAGTATTT
63292040 ATTATATTCG
Statistics
Matches: 83, Mismatches: 4, Indels: 31
0.70 0.03 0.26
Matches are distributed among these distances:
24 10 0.12
25 5 0.06
26 17 0.20
28 7 0.08
29 11 0.13
30 3 0.04
33 4 0.05
34 4 0.05
37 4 0.05
38 6 0.07
39 12 0.14
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (27 bp):
AAAAAGTATTTTAAAAATAAAAAAAAT
Found at i:63291998 original size:27 final size:27
Alignment explanation
Indices: 63291952--63292034 Score: 125
Period size: 26 Copynumber: 3.1 Consensus size: 27
63291942 AAAGTATTTT
*
63291952 AAAAA-TATTTTAAATTTTAAAAAATAA
1 AAAAAGTATTTTAAA-ATTAAAAAATAA
63291979 AAAAAGTATTTTAAAATT-AAAAATAA
1 AAAAAGTATTTTAAAATTAAAAAATAA
*
63292005 AAAAAGTATTTTAAAAATAAAAAATAA
1 AAAAAGTATTTTAAAATTAAAAAATAA
63292032 AAA
1 AAA
63292035 TATTTATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.48
27 18 0.35
28 9 0.17
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (27 bp):
AAAAAGTATTTTAAAATTAAAAAATAA
Found at i:63292000 original size:26 final size:26
Alignment explanation
Indices: 63291952--63292034 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 26
63291942 AAAGTATTTT
*
63291952 AAAAA-TATTTTAAATTTTAAAAAATAA
1 AAAAAGTATTTTAAA-ATT-AAAAATAA
63291979 AAAAAGTATTTTAAAATTAAAAATAA
1 AAAAAGTATTTTAAAATTAAAAATAA
*
63292005 AAAAAGTATTTTAAAAATAAAAAATAA
1 AAAAAGTATTTT-AAAATTAAAAATAA
63292032 AAA
1 AAA
63292035 TATTTATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
26 20 0.38
27 23 0.44
28 9 0.17
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (26 bp):
AAAAAGTATTTTAAAATTAAAAATAA
Found at i:63299604 original size:2 final size:2
Alignment explanation
Indices: 63299580--63299619 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
63299570 TATGTACATG
* * *
63299580 TA TA TG TA TA TG TA TA TA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
63299620 AGTTAATGAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (2 bp):
TA
Found at i:63303305 original size:17 final size:17
Alignment explanation
Indices: 63303283--63303320 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
63303273 AAAAGTAAGT
*
63303283 ATACAGGTAACAGACTC
1 ATACAGGCAACAGACTC
63303300 ATACAGGCAACAGACTC
1 ATACAGGCAACAGACTC
63303317 ATAC
1 ATAC
63303321 TTAAATACGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (17 bp):
ATACAGGCAACAGACTC
Found at i:63308574 original size:17 final size:18
Alignment explanation
Indices: 63308542--63308575 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
63308532 GATTTTAATG
*
63308542 TATTTTCATGTTATGTTA
1 TATTTTCATATTATGTTA
63308560 TATTTT-ATATTATGTT
1 TATTTTCATATTATGTT
63308576 TTTAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.24, C:0.03, G:0.09, T:0.65
Consensus pattern (18 bp):
TATTTTCATATTATGTTA
Found at i:63309929 original size:19 final size:18
Alignment explanation
Indices: 63309898--63309933 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
63309888 AAAAAAAAAC
63309898 AAATATCAACAGAAGTAG
1 AAATATCAACAGAAGTAG
*
63309916 AAATGATCACCAGAAGTA
1 AAAT-ATCAACAGAAGTA
63309934 ATTTTGGCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.53, C:0.14, G:0.17, T:0.17
Consensus pattern (18 bp):
AAATATCAACAGAAGTAG
Found at i:63318026 original size:22 final size:22
Alignment explanation
Indices: 63318001--63318053 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
63317991 TTTAAAAAAA
*
63318001 AATATTTATATTATATTATTTT
1 AATATTTATATTATAATATTTT
*
63318023 AATATTTAATATTTTAATATTTT
1 AATATTT-ATATTATAATATTTT
*
63318046 -TTATTTAT
1 AATATTTAT
63318054 CGAAAGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 12 0.44
23 13 0.48
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
AATATTTATATTATAATATTTT
Found at i:63318028 original size:8 final size:8
Alignment explanation
Indices: 63318017--63318045 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
63318007 TATATTATAT
63318017 TATTTTAA
1 TATTTTAA
63318025 TA-TTTAA
1 TATTTTAA
63318032 TATTTTAA
1 TATTTTAA
63318040 TATTTT
1 TATTTT
63318046 TTATTTATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
TATTTTAA
Found at i:63318050 original size:15 final size:15
Alignment explanation
Indices: 63318008--63318051 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
63317998 AAAAATATTT
63318008 ATATTATATTATTTTA
1 ATATT-TATTATTTTA
*
63318024 ATATTTAATATTTTA
1 ATATTTATTATTTTA
*
63318039 ATATTTTTTATTT
1 ATATTTATTATTT
63318052 ATCGAAAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 20 0.80
16 5 0.20
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATATTTATTATTTTA
Found at i:63325909 original size:16 final size:17
Alignment explanation
Indices: 63325880--63325912 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
63325870 CTCAAAAAAA
63325880 TAACACTAAAATTTATT
1 TAACACTAAAATTTATT
*
63325897 TAAC-CTAAGATTTATT
1 TAACACTAAAATTTATT
63325913 CTTTGCTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (17 bp):
TAACACTAAAATTTATT
Found at i:63327142 original size:15 final size:15
Alignment explanation
Indices: 63327099--63327145 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
63327089 AAGTTGTGGA
*
63327099 TTTAGTCTCTGTA-T
1 TTTAGTCTTTGTATT
*
63327113 TTTAAT-TTTGTTATT
1 TTTAGTCTTTG-TATT
63327128 TTTAGTCTTTGTATT
1 TTTAGTCTTTGTATT
63327143 TTT
1 TTT
63327146 TAAATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 3 0.11
14 7 0.26
15 13 0.48
16 4 0.15
ACGTcount: A:0.15, C:0.06, G:0.11, T:0.68
Consensus pattern (15 bp):
TTTAGTCTTTGTATT
Found at i:63329926 original size:23 final size:23
Alignment explanation
Indices: 63329900--63329955 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
63329890 TTTGTTTCAC
* *
63329900 ACTTTTATTCCATAATATTTTTA-
1 ACTTTTATTACATAA-ATTTATAT
*
63329923 ACTTGTATTACATAAATTTATAT
1 ACTTTTATTACATAAATTTATAT
63329946 ACTTTTATTA
1 ACTTTTATTA
63329956 TTTTTATTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 6 0.21
23 22 0.79
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.54
Consensus pattern (23 bp):
ACTTTTATTACATAAATTTATAT
Found at i:63330405 original size:17 final size:18
Alignment explanation
Indices: 63330365--63330426 Score: 65
Period size: 17 Copynumber: 3.4 Consensus size: 18
63330355 TATTTTGAAA
*
63330365 TTATGAAATATATAAAAT
1 TTATTAAATATATAAAAT
*
63330383 CT-TTAAATATAT-AAAT
1 TTATTAAATATATAAAAT
*
63330399 TTATTAAAAAATATAAATAT
1 TTATT-AAATATATAAA-AT
63330419 TTATTAAA
1 TTATTAAA
63330427 AATTAAGCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 5 0.14
17 11 0.31
18 8 0.22
19 5 0.14
20 7 0.19
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (18 bp):
TTATTAAATATATAAAAT
Found at i:63330429 original size:19 final size:20
Alignment explanation
Indices: 63330387--63330428 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
63330377 TAAAATCTTT
63330387 AAATATATAAATTTATTAAA
1 AAATATATAAATTTATTAAA
63330407 AAATATA-AATATTTATTAAA
1 AAATATATAA-ATTTATTAAA
63330427 AA
1 AA
63330429 TTAAGCAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AAATATATAAATTTATTAAA
Found at i:63330849 original size:19 final size:19
Alignment explanation
Indices: 63330827--63330871 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
63330817 TTTTTACAAT
63330827 TTTTTTATAAA-TTTAT-A
1 TTTTTTATAAATTTTATAA
*
63330844 TATTTTTAAAAATTTTATAA
1 T-TTTTTATAAATTTTATAA
63330864 TTTTTTAT
1 TTTTTTAT
63330872 TAATATTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.04
18 9 0.39
19 11 0.48
20 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTTTATAAATTTTATAA
Found at i:63330851 original size:18 final size:18
Alignment explanation
Indices: 63330828--63330868 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
63330818 TTTTACAATT
*
63330828 TTTTTATAAA-TTTATATA
1 TTTTTAAAAATTTTATA-A
63330846 TTTTTAAAAATTTTATAA
1 TTTTTAAAAATTTTATAA
63330864 TTTTT
1 TTTTT
63330869 TATTAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTAAAAATTTTATAA
Done.