Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 189 of 284
Found at i:63925377 original size:31 final size:29
Alignment explanation
Indices: 63925277--63925379 Score: 97
Period size: 31 Copynumber: 3.5 Consensus size: 29
63925267 AAATTTATAT
*
63925277 AAATTTATAAAAATTTA-AAAAA-TCATAA
1 AAATTTATAAAAATTTATAAAAACT-ATTA
* *
63925305 AAATTTAT-AAAAGTAATAAAAACATATTTA
1 AAATTTATAAAAATTTATAAAAAC-TA-TTA
63925335 AAATGTT-TAAAAATTTATAAAAACGTATTA
1 AAAT-TTATAAAAATTTATAAAAAC-TATTA
63925365 AAATTCTATAAAAAT
1 AAATT-TATAAAAAT
63925380 CATAAAATTA
Statistics
Matches: 61, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
27 6 0.10
28 13 0.21
29 2 0.03
30 16 0.26
31 24 0.39
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (29 bp):
AAATTTATAAAAATTTATAAAAACTATTA
Found at i:63925448 original size:41 final size:40
Alignment explanation
Indices: 63925342--63925448 Score: 112
Period size: 41 Copynumber: 2.6 Consensus size: 40
63925332 TTAAAATGTT
* *
63925342 TAAAAATTTATAAAAAC-GTATTAAAATTCTATAAAAATCA
1 TAAAAA-TTATAAAAACAATATTAAAATTATATAAAAATCA
* * *
63925382 T-AAAATTATAAAAAAAAGTATTAAAATTGATAT-AAACTTA
1 TAAAAATTATAAAAACAA-TATTAAAATT-ATATAAAAATCA
63925422 TAAAAATTATAAAAACAATATATAAAA
1 TAAAAATTATAAAAACAATAT-TAAAA
63925449 AACTTGAATT
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
38 9 0.16
39 4 0.07
40 20 0.36
41 23 0.41
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (40 bp):
TAAAAATTATAAAAACAATATTAAAATTATATAAAAATCA
Found at i:63925965 original size:11 final size:10
Alignment explanation
Indices: 63925949--63925973 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
63925939 TATTTTAAAT
63925949 AATTTTTTAA
1 AATTTTTTAA
63925959 AATTTTTTAA
1 AATTTTTTAA
63925969 AATTT
1 AATTT
63925974 AATTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:63926012 original size:17 final size:17
Alignment explanation
Indices: 63925960--63926028 Score: 54
Period size: 19 Copynumber: 3.9 Consensus size: 17
63925950 ATTTTTTAAA
*
63925960 ATTTTT-TAAAATTTA-
1 ATTTTTATAATATTTAT
*
63925975 ATTTTTATTAGAGTTTTTAT
1 ATTTTTA-TA-A-TATTTAT
63925995 ATTTTTATAATATTTAT
1 ATTTTTATAATATTTAT
63926012 ATGTTTTTATAAT-TTTA
1 A--TTTTTATAATATTTA
63926029 ATAAGTTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
15 6 0.14
17 9 0.20
18 6 0.14
19 16 0.36
20 7 0.16
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (17 bp):
ATTTTTATAATATTTAT
Found at i:63926027 original size:9 final size:9
Alignment explanation
Indices: 63925973--63926096 Score: 56
Period size: 9 Copynumber: 13.0 Consensus size: 9
63925963 TTTTAAAATT
63925973 TAATTTTTA
1 TAATTTTTA
63925982 TTAGAGTTTTTA
1 -TA-A-TTTTTA
63925994 T-ATTTTTA
1 TAATTTTTA
*
63926002 TAATATTTA
1 TAATTTTTA
*
63926011 TATGTTTTTA
1 TA-ATTTTTA
*
63926021 TAATTTTAA
1 TAATTTTTA
*
63926030 TAAGTTTATA
1 TAA-TTTTTA
63926040 TCAA-TTTTA
1 T-AATTTTTA
*
63926049 TTA-TTTTA
1 TAATTTTTA
*
63926057 TTATATTTTTG
1 -TA-ATTTTTA
*
63926068 TGATTTTTTA
1 T-AATTTTTA
*
63926078 TATTTTTTA
1 TAATTTTTA
*
63926087 AAGATTTTTA
1 TA-ATTTTTA
63926097 ATCATTTTTC
Statistics
Matches: 88, Mismatches: 15, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
8 13 0.15
9 32 0.36
10 28 0.32
11 9 0.10
12 6 0.07
ACGTcount: A:0.30, C:0.01, G:0.06, T:0.64
Consensus pattern (9 bp):
TAATTTTTA
Found at i:63926036 original size:19 final size:19
Alignment explanation
Indices: 63925996--63926048 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
63925986 AGTTTTTATA
*
63925996 TTTTTATAATATTT-ATATG
1 TTTTTATAAT-TTTAATAAG
63926015 TTTTTATAATTTTAATAAG
1 TTTTTATAATTTTAATAAG
*
63926034 TTTATATCAATTTTA
1 TTTTTAT-AATTTTA
63926049 TTATTTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 3 0.10
19 20 0.67
20 7 0.23
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTTATAATTTTAATAAG
Found at i:63926037 original size:27 final size:27
Alignment explanation
Indices: 63925987--63926040 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
63925977 TTTTATTAGA
*
63925987 GTTTTTATATTTTTATAATATTTATAT
1 GTTTTTATATTTTAATAATATTTATAT
*
63926014 GTTTTTATAATTTTAATAA-GTTTATAT
1 GTTTTTAT-ATTTTAATAATATTTATAT
63926041 CAATTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (27 bp):
GTTTTTATATTTTAATAATATTTATAT
Found at i:63930403 original size:32 final size:30
Alignment explanation
Indices: 63930363--63930421 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
63930353 TATTTGAGTT
63930363 AATTAAATTATTCGGATAAACTCGAATAAAA
1 AATTAAATTATT-GGATAAACTCGAATAAAA
* * *
63930394 AATTAAAATTCTTGGTTTAACTCGAATA
1 AATT-AAATTATTGGATAAACTCGAATA
63930422 TAAATTACAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 17 0.71
32 7 0.29
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (30 bp):
AATTAAATTATTGGATAAACTCGAATAAAA
Found at i:63931168 original size:14 final size:14
Alignment explanation
Indices: 63931149--63931178 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
63931139 ATATGCTTCA
63931149 TACACATATAAGTG
1 TACACATATAAGTG
63931163 TACACATATAAGTG
1 TACACATATAAGTG
63931177 TA
1 TA
63931179 ATGATTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (14 bp):
TACACATATAAGTG
Found at i:63933335 original size:20 final size:21
Alignment explanation
Indices: 63933303--63933347 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
63933293 ATATTTTTAA
63933303 TTTTAAAATTTATTTTG-ATT
1 TTTTAAAATTTATTTTGAATT
63933323 TTTTGAAAA-TTATTTTGAATT
1 TTTT-AAAATTTATTTTGAATT
63933344 TTTT
1 TTTT
63933348 TTTGTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (21 bp):
TTTTAAAATTTATTTTGAATT
Found at i:63935046 original size:15 final size:14
Alignment explanation
Indices: 63935025--63935060 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
63935015 ATAATTCTTA
*
63935025 ATAATTATCTTAAT
1 ATAATTATCCTAAT
63935039 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
63935054 ATAATTA
1 ATAATTA
63935061 AAATAGAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:63936324 original size:17 final size:18
Alignment explanation
Indices: 63936309--63936367 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 18
63936299 AGTAATAAAT
*
63936309 AATAAAATAAAATAAACT
1 AATAAAATAAAATAAACA
* *
63936327 AAT-AAATAAAGTAAAGA
1 AATAAAATAAAATAAACA
63936344 AACTAAAAT-AAATAAA-A
1 AA-TAAAATAAAATAAACA
63936361 AATAAAA
1 AATAAAA
63936368 ATTGGGTTGC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
16 5 0.14
17 16 0.46
18 10 0.29
19 4 0.11
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (18 bp):
AATAAAATAAAATAAACA
Found at i:63938620 original size:29 final size:29
Alignment explanation
Indices: 63938587--63938644 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
63938577 GCTAGGGAGA
*
63938587 AAGGGAAAGCACGCAATTCAATCTAATCC
1 AAGGGAAAGCACACAATTCAATCTAATCC
* *
63938616 AAGGGAAAGCACACAATTTAATCTGATCC
1 AAGGGAAAGCACACAATTCAATCTAATCC
63938645 TCAGTTACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.19
Consensus pattern (29 bp):
AAGGGAAAGCACACAATTCAATCTAATCC
Found at i:63940242 original size:15 final size:14
Alignment explanation
Indices: 63940221--63940256 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
63940211 ATAATCCTTA
*
63940221 ATAATTATCTTAAT
1 ATAATTATCCTAAT
63940235 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
63940250 ATAATTA
1 ATAATTA
63940257 AAATAGAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:63941717 original size:19 final size:19
Alignment explanation
Indices: 63941689--63941730 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
63941679 TCATCAATTA
63941689 ATTTAATAAT-ATTACTATT
1 ATTTAATAATCA-TACTATT
* *
63941708 ATTTATTAATCATATTATT
1 ATTTAATAATCATACTATT
63941727 ATTT
1 ATTT
63941731 GTATTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 19 0.95
20 1 0.05
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTAATAATCATACTATT
Found at i:63949943 original size:57 final size:58
Alignment explanation
Indices: 63949847--63949962 Score: 146
Period size: 57 Copynumber: 2.0 Consensus size: 58
63949837 TTAATAGGTA
* * *
63949847 AAAATGGAAAAATGGGAAACATTTGGAGATGATTATGGTTTTCT-CAAAGATGAAAATG
1 AAAATGGAAAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAA-ATGAAAATG
* * * *
63949905 AAAATGGAGAAAT-AGAATCATTTGGAAATGAATGTGGTTTTCTCCTAAATGAAAATG
1 AAAATGGAAAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAATG
63949962 A
1 A
63949963 CCTGAAAAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
57 35 0.70
58 15 0.30
ACGTcount: A:0.43, C:0.06, G:0.22, T:0.28
Consensus pattern (58 bp):
AAAATGGAAAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAATG
Found at i:63954484 original size:19 final size:17
Alignment explanation
Indices: 63954460--63954503 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 17
63954450 ATAGTCTTTG
63954460 TTATTATCATTATTTTTA
1 TTATTAT-ATTATTTTTA
63954478 TTTATTAATATTATTTTTA
1 -TTATT-ATATTATTTTTA
63954497 TTATTAT
1 TTATTAT
63954504 TGTCAATGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.08
18 5 0.21
19 15 0.62
20 2 0.08
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (17 bp):
TTATTATATTATTTTTA
Found at i:63954730 original size:17 final size:17
Alignment explanation
Indices: 63954693--63954735 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
63954683 ATTACATTTT
*
63954693 TATTATTATTTATGTAG
1 TATTATTATTTATATAG
63954710 TATTATTATTATATATA-
1 TATTATTATT-TATATAG
*
63954727 TATTTTTAT
1 TATTATTAT
63954736 AAATCTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (17 bp):
TATTATTATTTATATAG
Found at i:63954735 original size:20 final size:20
Alignment explanation
Indices: 63954688--63954735 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
63954678 GTTTCATTAC
* *
63954688 ATTTTTATTATTATTTATGT
1 ATTTTTATTATTATATATAT
* *
63954708 AGTATTATTATTATATATAT
1 ATTTTTATTATTATATATAT
63954728 ATTTTTAT
1 ATTTTTAT
63954736 AAATCTATAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (20 bp):
ATTTTTATTATTATATATAT
Found at i:63958703 original size:41 final size:41
Alignment explanation
Indices: 63958657--63959030 Score: 324
Period size: 41 Copynumber: 8.6 Consensus size: 41
63958647 CATTGAATGT
*
63958657 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAA
*
63958698 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAA
* *
63958739 ACGGGGTTGCTAAGTGCAGATTCCCTGAATCACTGATCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAA
* * * *
63958780 AAGGGGTTGCTAACTGATCGAAAAGGGGTT--GCTAACTGCA--GATTCCCCGAATCACTGATCG
1 AAGGGGTTGCTAA--G-T-G--CA--GATTCCCCGAA-T-CACTGA-T---CG------------
63958841 AA
40 AA
* * *
63958843 AAGGGGTTGCTAATTGTAGATTCCCCGAATCATTGATCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAA
* *
63958884 AAGGGGTTGGTAAGTGCAGATTCCCCGAATCATTGATCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAA
* * *
63958925 AAAGGGTTGCTAAGTGCAGATTCCCCTAATCATTGATCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAA
* *
63958966 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTAATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAA
63959007 AAGGGGTTGCTAAGTGCAGATTCC
1 AAGGGGTTGCTAAGTGCAGATTCC
63959031 TCGAGGGGTT
Statistics
Matches: 276, Mismatches: 27, Indels: 60
0.76 0.07 0.17
Matches are distributed among these distances:
41 227 0.82
43 1 0.00
44 1 0.00
45 1 0.00
47 5 0.02
48 2 0.01
49 5 0.02
51 2 0.01
53 2 0.01
55 5 0.02
56 2 0.01
57 6 0.02
59 1 0.00
60 1 0.00
63 15 0.05
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAA
Found at i:63958798 original size:22 final size:22
Alignment explanation
Indices: 63958770--63958817 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
63958760 TCCCTGAATC
63958770 ACTGATCGAAAAGGGGTTGCTA
1 ACTGATCGAAAAGGGGTTGCTA
63958792 ACTGATCGAAAAGGGGTTGCTA
1 ACTGATCGAAAAGGGGTTGCTA
63958814 ACTG
1 ACTG
63958818 CAGATTCCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (22 bp):
ACTGATCGAAAAGGGGTTGCTA
Found at i:63958832 original size:63 final size:63
Alignment explanation
Indices: 63958731--63958855 Score: 223
Period size: 63 Copynumber: 2.0 Consensus size: 63
63958721 CCCGAATCAT
* * *
63958731 TGATCGAAACGGGGTTGCTAAGTGCAGATTCCCTGAATCACTGATCGAAAAGGGGTTGCTAAC
1 TGATCGAAAAGGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCGAAAAGGGGTTGCTAAC
63958794 TGATCGAAAAGGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCGAAAAGGGGTTGCTAA
1 TGATCGAAAAGGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCGAAAAGGGGTTGCTAA
63958856 TTGTAGATTC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (63 bp):
TGATCGAAAAGGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCGAAAAGGGGTTGCTAAC
Found at i:63958877 original size:145 final size:145
Alignment explanation
Indices: 63958657--63958937 Score: 481
Period size: 145 Copynumber: 1.9 Consensus size: 145
63958647 CATTGAATGT
*
63958657 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGGGGTTGCTAAGTGCAGATTCC
1 AAGGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCAAAAAGGGGTTGCTAAGTGCAGATTCC
* * *
63958722 CCGAATCATTGATCGAAACGGGGTTGCTAAGTGCAGATTCCCTGAATCACTGATCGAAAAGGGGT
66 CCGAATCATTGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAAAAAGGGT
63958787 TGCTAACTGATCGAA
131 TGCTAACTGATCGAA
* * *
63958802 AAGGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCGAAAAGGGGTTGCTAATTGTAGATTCC
1 AAGGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCAAAAAGGGGTTGCTAAGTGCAGATTCC
* *
63958867 CCGAATCATTGATCGAAAAGGGGTTGGTAAGTGCAGATTCCCCGAATCATTGATCGAAAAAGGGT
66 CCGAATCATTGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAAAAAGGGT
63958932 TGCTAA
131 TGCTAA
63958938 GTGCAGATTC
Statistics
Matches: 127, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
145 127 1.00
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (145 bp):
AAGGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCAAAAAGGGGTTGCTAAGTGCAGATTCC
CCGAATCATTGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAAAAAGGGT
TGCTAACTGATCGAA
Found at i:63958932 original size:82 final size:82
Alignment explanation
Indices: 63958794--63959030 Score: 386
Period size: 82 Copynumber: 2.9 Consensus size: 82
63958784 GGTTGCTAAC
* * *
63958794 TGATCGAAAAGGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCGAAAAGGGGTTGCTAATTG
1 TGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAAAAAGGGTTGCTAAGTG
*
63958859 TAGATTCCCCGAATCAT
66 CAGATTCCCCGAATCAT
* *
63958876 TGATCGAAAAGGGGTTGGTAAGTGCAGATTCCCCGAATCATTGATCGAAAAAGGGTTGCTAAGTG
1 TGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAAAAAGGGTTGCTAAGTG
*
63958941 CAGATTCCCCTAATCAT
66 CAGATTCCCCGAATCAT
*
63958958 TGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTAATC-AAAAAGGGGTTGCTAAGT
1 TGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAAAAA-GGGTTGCTAAGT
63959022 GCAGATTCC
65 GCAGATTCC
63959031 TCGAGGGGTT
Statistics
Matches: 144, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
81 5 0.03
82 139 0.97
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (82 bp):
TGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAAAAAGGGTTGCTAAGTG
CAGATTCCCCGAATCAT
Found at i:63959013 original size:123 final size:123
Alignment explanation
Indices: 63958794--63959030 Score: 384
Period size: 123 Copynumber: 1.9 Consensus size: 123
63958784 GGTTGCTAAC
* *
63958794 TGATCGAAAAGGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCGAAAAGGGGTTGCTAATTG
1 TGATCGAAAAAGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCGAAAAGGGGTTGCTAAGTG
* * * * *
63958859 TAGATTCCCCGAATCATTGATCGAAAAGGGGTTGGTAAGTGCAGATTCCCCGAATCAT
66 CAGATTCCCCGAATCACTAATCAAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCAT
* * *
63958917 TGATCGAAAAAGGGTTGCTAAGTGCAGATTCCCCTAATCATTGATCGAAAAGGGGTTGCTAAGTG
1 TGATCGAAAAAGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCGAAAAGGGGTTGCTAAGTG
63958982 CAGATTCCCCGAATCACTAATCAAAAAGGGGTTGCTAAGTGCAGATTCC
66 CAGATTCCCCGAATCACTAATCAAAAAGGGGTTGCTAAGTGCAGATTCC
63959031 TCGAGGGGTT
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
123 104 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (123 bp):
TGATCGAAAAAGGGTTGCTAACTGCAGATTCCCCGAATCACTGATCGAAAAGGGGTTGCTAAGTG
CAGATTCCCCGAATCACTAATCAAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCAT
Found at i:63961340 original size:17 final size:17
Alignment explanation
Indices: 63961320--63961355 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
63961310 TATCATGCAA
* *
63961320 AACAATTTAGAGTAAAT
1 AACAATTTAAAATAAAT
63961337 AACAATTTAAAATAAAT
1 AACAATTTAAAATAAAT
63961354 AA
1 AA
63961356 TTTAAGAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.28
Consensus pattern (17 bp):
AACAATTTAAAATAAAT
Found at i:63961359 original size:14 final size:15
Alignment explanation
Indices: 63961340--63961368 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63961330 AGTAAATAAC
63961340 AATTTAA-AATAAAT
1 AATTTAAGAATAAAT
63961354 AATTTAAGAATAAAT
1 AATTTAAGAATAAAT
63961369 CAAGAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
AATTTAAGAATAAAT
Found at i:63964517 original size:23 final size:23
Alignment explanation
Indices: 63964491--63964561 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 23
63964481 AGGAGAGTGT
63964491 TGAGAAGAAAGTAGACAGTTAGC
1 TGAGAAGAAAGTAGACAGTTAGC
* * *
63964514 TGAGAACTAGAAG--GAGAG-T-GT
1 TGAGAA-GA-AAGTAGACAGTTAGC
63964535 TGAGAAGAAAGTAGACAGTTAGC
1 TGAGAAGAAAGTAGACAGTTAGC
63964558 TGAG
1 TGAG
63964562 TAATTAGACT
Statistics
Matches: 36, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
19 3 0.08
20 1 0.03
21 11 0.31
22 2 0.06
23 15 0.42
24 1 0.03
25 3 0.08
ACGTcount: A:0.41, C:0.07, G:0.34, T:0.18
Consensus pattern (23 bp):
TGAGAAGAAAGTAGACAGTTAGC
Found at i:63964537 original size:44 final size:44
Alignment explanation
Indices: 63964474--63964561 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
63964464 ATCACCCCTC
63964474 AACTAGAAGGAGAGTGTTGAGAAGAAAGTAGACAGTTAGCTGAG
1 AACTAGAAGGAGAGTGTTGAGAAGAAAGTAGACAGTTAGCTGAG
63964518 AACTAGAAGGAGAGTGTTGAGAAGAAAGTAGACAGTTAGCTGAG
1 AACTAGAAGGAGAGTGTTGAGAAGAAAGTAGACAGTTAGCTGAG
63964562 TAATTAGACT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.41, C:0.07, G:0.34, T:0.18
Consensus pattern (44 bp):
AACTAGAAGGAGAGTGTTGAGAAGAAAGTAGACAGTTAGCTGAG
Found at i:63966501 original size:22 final size:23
Alignment explanation
Indices: 63966458--63966506 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
63966448 TAAAACAAGC
*
63966458 ATATATATAATAAATATTAAAATT
1 ATATATATAATAAATA-TAAAAAT
* *
63966482 ATATTTATATTAAATA-AAAAAT
1 ATATATATAATAAATATAAAAAT
63966504 ATA
1 ATA
63966507 AACTAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 8 0.36
24 14 0.64
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
ATATATATAATAAATATAAAAAT
Found at i:63966588 original size:18 final size:17
Alignment explanation
Indices: 63966573--63966606 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
63966563 AATTTTATGT
63966573 AAATTATTATTTTTATTA
1 AAATTA-TATTTTTATTA
*
63966591 AAATTATATTTATATT
1 AAATTATATTTTTATT
63966607 GAATTATAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
AAATTATATTTTTATTA
Found at i:63966592 original size:17 final size:17
Alignment explanation
Indices: 63966565--63966613 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
63966555 AATAGTTAAA
63966565 TTTTATGTAAATTATTAT
1 TTTTAT-TAAATTATTAT
63966583 TTTTATTAAAATTA-TAT
1 TTTTATT-AAATTATTAT
* *
63966600 TTATATTGAATTAT
1 TTTTATTAAATTAT
63966614 AACACATTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 5 0.19
17 10 0.37
18 12 0.44
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (17 bp):
TTTTATTAAATTATTAT
Found at i:63967232 original size:34 final size:34
Alignment explanation
Indices: 63967190--63967330 Score: 110
Period size: 34 Copynumber: 4.1 Consensus size: 34
63967180 TGAAACATGA
63967190 GAATTTTTTTTTAAACACGAGAATTTTGGAAACAC
1 GAATTTTTTTTTAAACACGA-AATTTTGGAAACAC
** * *
63967225 -AATTTTTTTAAAAAAATGAAAATTTAT-GAAACAC
1 GAATTTTTTTTTAAACACG-AAATTT-TGGAAACAC
*
63967259 GAGA-TTTTTTTTAAACACGAAATTTTGAAAACACC
1 GA-ATTTTTTTTTAAACACGAAATTTTGGAAACA-C
* ** * *
63967294 GAA-ATTTTTGAAAACACGAAAATTTTTGAAATAC
1 GAATTTTTTTTTAAACACG-AAATTTTGGAAACAC
63967328 GAA
1 GAA
63967331 AAAATTTTGA
Statistics
Matches: 84, Mismatches: 15, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
33 1 0.01
34 54 0.64
35 28 0.33
36 1 0.01
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34
Consensus pattern (34 bp):
GAATTTTTTTTTAAACACGAAATTTTGGAAACAC
Found at i:63967302 original size:18 final size:17
Alignment explanation
Indices: 63967244--63967434 Score: 120
Period size: 18 Copynumber: 10.7 Consensus size: 17
63967234 AAAAAAATGA
*
63967244 AAATTTATG-AAACACG
1 AAATTTTTGAAAACACG
* **
63967260 AGATTTTTTTTAAACACG
1 A-AATTTTTGAAAACACG
63967278 AAA-TTTTGAAAACACCG
1 AAATTTTTGAAAACA-CG
63967295 AAATTTTTGAAAACACG
1 AAATTTTTGAAAACACG
*
63967312 AAAATTTTTGAAATACGA-A
1 -AAATTTTTGAAA-AC-ACG
* *
63967331 AAAATTTTGAAAACACA
1 AAATTTTTGAAAACACG
* *
63967348 AAATTTTTTTTTAAAACTCAG
1 AAA---TTTTTGAAAACAC-G
*
63967369 AAATTTTTTAAAACACGGG
1 AAATTTTTGAAAACAC--G
*
63967388 AATTTTTTG-AAACATCG
1 AAATTTTTGAAAACA-CG
* *
63967405 GAATTTTTAAAAACACG
1 AAATTTTTGAAAACACG
63967422 AAGATTTTTGAAA
1 AA-ATTTTTGAAA
63967435 CATGAATTTT
Statistics
Matches: 138, Mismatches: 21, Indels: 30
0.73 0.11 0.16
Matches are distributed among these distances:
16 11 0.08
17 29 0.21
18 73 0.53
19 11 0.08
20 11 0.08
21 3 0.02
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34
Consensus pattern (17 bp):
AAATTTTTGAAAACACG
Found at i:63967302 original size:69 final size:71
Alignment explanation
Indices: 63967180--63967329 Score: 182
Period size: 69 Copynumber: 2.1 Consensus size: 71
63967170 GCGATCCAAT
* * * *
63967180 TGAAACATGAGAATTTTTTTTTAAACACGAGAATTTTGGAAACACAATTTTTTTAAAAAAATGAA
1 TGAAACACGAGAATTTTTTTTTAAACACGAGAATTTTGAAAACACAATATTTTTAAAAAAACGAA
63967245 AATTTA
66 AATTTA
* *
63967251 TGAAACACGAG-A-TTTTTTTTAAACACGA-AATTTTGAAAACACCGAA-ATTTTTGAAAACACG
1 TGAAACACGAGAATTTTTTTTTAAACACGAGAATTTTGAAAACA-C-AATATTTTTAAAAAAACG
*
63967312 AAAATTTT
64 AAAATTTA
*
63967320 TGAAATACGA
1 TGAAACACGA
63967330 AAAAATTTTG
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
68 12 0.17
69 44 0.64
70 3 0.04
71 10 0.14
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (71 bp):
TGAAACACGAGAATTTTTTTTTAAACACGAGAATTTTGAAAACACAATATTTTTAAAAAAACGAA
AATTTA
Found at i:63967363 original size:20 final size:21
Alignment explanation
Indices: 63967335--63967377 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
63967325 TACGAAAAAA
63967335 TTTTGAAAACACA-AAATTTT
1 TTTTGAAAACACAGAAATTTT
* *
63967355 TTTTTAAAACTCAGAAATTTT
1 TTTTGAAAACACAGAAATTTT
63967376 TT
1 TT
63967378 AAAACACGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.47
Consensus pattern (21 bp):
TTTTGAAAACACAGAAATTTT
Found at i:63967435 original size:17 final size:17
Alignment explanation
Indices: 63967391--63967445 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
63967381 ACACGGGAAT
*
63967391 TTTTTGAAACATCGGAA
1 TTTTTGAAACATCGAAA
*
63967408 TTTTTAAAAACA-CGAAGA
1 TTTTT-GAAACATCGAA-A
63967426 TTTTTGAAACAT-G-AA
1 TTTTTGAAACATCGAAA
63967441 TTTTT
1 TTTTT
63967446 TTAAATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 6 0.19
16 1 0.03
17 14 0.44
18 11 0.34
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (17 bp):
TTTTTGAAACATCGAAA
Found at i:63967447 original size:17 final size:16
Alignment explanation
Indices: 63967387--63967446 Score: 57
Period size: 18 Copynumber: 3.6 Consensus size: 16
63967377 TAAAACACGG
63967387 GAATTTTTTGAAACAT
1 GAATTTTTTGAAACAT
** *
63967403 CGGAATTTTTAAAAACAC
1 --GAATTTTTTGAAACAT
*
63967421 GAAGATTTTTGAAACAT
1 GAA-TTTTTTGAAACAT
63967438 GAATTTTTT
1 GAATTTTTT
63967447 TAAATTTTTT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
16 8 0.24
17 12 0.36
18 13 0.39
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.40
Consensus pattern (16 bp):
GAATTTTTTGAAACAT
Found at i:63967961 original size:10 final size:10
Alignment explanation
Indices: 63967946--63968006 Score: 59
Period size: 11 Copynumber: 5.7 Consensus size: 10
63967936 ATTGAACCCC
63967946 CTTTTTTCTT
1 CTTTTTTCTT
*
63967956 CTTTTTTTTT
1 CTTTTTTCTT
63967966 CTTTTTTTCTT
1 C-TTTTTTCTT
*
63967977 TTTTCTTTCTCT
1 CTTT-TTTCT-T
*
63967989 TTTTTTCTCTT
1 CTTTTT-TCTT
63968000 CTTTTTT
1 CTTTTTT
63968007 TTGGCCTGCT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
10 14 0.33
11 21 0.49
12 8 0.19
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (10 bp):
CTTTTTTCTT
Found at i:63967965 original size:13 final size:14
Alignment explanation
Indices: 63967947--63968008 Score: 81
Period size: 15 Copynumber: 4.4 Consensus size: 14
63967937 TTGAACCCCC
63967947 TTTTTTC-TTCTTT
1 TTTTTTCTTTCTTT
*
63967960 TTTTTTCTTTTTTT
1 TTTTTTCTTTCTTT
*
63967974 CTTTTTTCTTTCTCT
1 -TTTTTTCTTTCTTT
63967989 TTTTTTCTCTTCTTT
1 TTTTTTCT-TTCTTT
63968004 TTTTT
1 TTTTT
63968009 GGCCTGCTGC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
13 7 0.17
14 13 0.31
15 22 0.52
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTCTTTCTTT
Found at i:63967973 original size:21 final size:22
Alignment explanation
Indices: 63967947--63968008 Score: 83
Period size: 21 Copynumber: 2.8 Consensus size: 22
63967937 TTGAACCCCC
63967947 TTTTTTCTTCTTTTTTTTTC-T
1 TTTTTTCTTCTTTTTTTTTCTT
*
63967968 TTTTTTCTT-TTTTCTTTCTCTT
1 TTTTTTCTTCTTTT-TTTTTCTT
63967990 TTTTTCTCTTCTTTTTTTT
1 TTTTT-TCTTCTTTTTTTT
63968009 GGCCTGCTGC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 4 0.11
21 14 0.40
22 6 0.17
23 7 0.20
24 4 0.11
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTTTCTTCTTTTTTTTTCTT
Found at i:63973925 original size:29 final size:30
Alignment explanation
Indices: 63973880--63974054 Score: 157
Period size: 30 Copynumber: 5.9 Consensus size: 30
63973870 AATTACAGTA
*
63973880 AAAATTTT-AGGGCTC-AAGTATAATTTTAGG
1 AAAATTTTAAGGG-TCAAAATATAATTTTA-G
* *
63973910 AAAA-TTTAAGGGTCAAAATAAAATTTCA-
1 AAAATTTTAAGGGTCAAAATATAATTTTAG
* *
63973938 AAAATTTTATGGGTCAAAATGTAA-TTTAG
1 AAAATTTTAAGGGTCAAAATATAATTTTAG
* *
63973967 AAAAAGTTTAGGGGTCAAAATATAATTTTAGG
1 -AAAATTTTAAGGGTCAAAATATAATTTTA-G
* * **
63973999 ATAA-TTTAGGGGTCAAAATGCAATTTTA-
1 AAAATTTTAAGGGTCAAAATATAATTTTAG
*
63974027 AAAATTTTAAGGGTCAAAATGTAATTTT
1 AAAATTTTAAGGGTCAAAATATAATTTT
63974055 TATTTTTTGT
Statistics
Matches: 121, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
28 10 0.08
29 42 0.35
30 61 0.50
31 7 0.06
32 1 0.01
ACGTcount: A:0.43, C:0.05, G:0.17, T:0.35
Consensus pattern (30 bp):
AAAATTTTAAGGGTCAAAATATAATTTTAG
Found at i:63974030 original size:89 final size:88
Alignment explanation
Indices: 63973879--63974053 Score: 260
Period size: 89 Copynumber: 2.0 Consensus size: 88
63973869 CAATTACAGT
* *
63973879 AAAAATTTTAGGGCTCAAGTATAATTTTAGGAAAATTTAAGGGTCAAAATAAAATTTCAAAAATT
1 AAAAAGTTTAGGGCTCAAATATAATTTTAGGAAAATTTAAGGGTCAAAATAAAATTTCAAAAATT
*
63973944 TTATGGGTCAAAATGTAATTTAG
66 TTAAGGGTCAAAATGTAATTTAG
* * * ** *
63973967 AAAAAGTTTAGGGGTCAAAATATAATTTTAGGATAATTTAGGGGTCAAAATGCAATTTTAAAAAT
1 AAAAAGTTTAGGGCTC-AAATATAATTTTAGGAAAATTTAAGGGTCAAAATAAAATTTCAAAAAT
63974032 TTTAAGGGTCAAAATGTAATTT
65 TTTAAGGGTCAAAATGTAATTT
63974054 TTATTTTTTG
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
88 14 0.18
89 63 0.82
ACGTcount: A:0.43, C:0.05, G:0.17, T:0.34
Consensus pattern (88 bp):
AAAAAGTTTAGGGCTCAAATATAATTTTAGGAAAATTTAAGGGTCAAAATAAAATTTCAAAAATT
TTAAGGGTCAAAATGTAATTTAG
Found at i:63974056 original size:60 final size:60
Alignment explanation
Indices: 63973904--63974054 Score: 175
Period size: 59 Copynumber: 2.6 Consensus size: 60
63973894 CAAGTATAAT
* * * * * *
63973904 TTTAGGAAAA-TTTAAGGGTCAAAATAAAATTTCA--AAAATTTTATGGGTCAAAATGTAA
1 TTTAGAAAAAGTTTAAGGGTCAAAATATAATTTTAGGATAA-TTTAGGGGTCAAAATGCAA
*
63973962 TTTAGAAAAAGTTTAGGGGTCAAAATATAATTTTAGGATAATTTAGGGGTCAAAATGCAA
1 TTTAGAAAAAGTTTAAGGGTCAAAATATAATTTTAGGATAATTTAGGGGTCAAAATGCAA
* * *
63974022 TTT-TAAAAATTTTAAGGGTCAAAATGTAATTTT
1 TTTAGAAAAAGTTTAAGGGTCAAAATATAATTTT
63974055 TATTTTTTGT
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
58 9 0.11
59 47 0.59
60 20 0.25
61 3 0.04
ACGTcount: A:0.43, C:0.05, G:0.17, T:0.35
Consensus pattern (60 bp):
TTTAGAAAAAGTTTAAGGGTCAAAATATAATTTTAGGATAATTTAGGGGTCAAAATGCAA
Found at i:63974639 original size:18 final size:18
Alignment explanation
Indices: 63974616--63974658 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
63974606 GAATAGGTTT
63974616 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
*
63974634 TTAATTAAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
63974652 TTAATTA
1 TTAATTA
63974659 CACCTTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:63975111 original size:7 final size:7
Alignment explanation
Indices: 63975095--63975132 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
63975085 CAGAATAACC
*
63975095 CTTTCTT
1 CTTTCAT
63975102 CTTTCAT
1 CTTTCAT
63975109 CTTTCAT
1 CTTTCAT
63975116 CTTTCAT
1 CTTTCAT
63975123 CTTTCAT
1 CTTTCAT
63975130 CTT
1 CTT
63975133 GATCTAGCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.11, C:0.29, G:0.00, T:0.61
Consensus pattern (7 bp):
CTTTCAT
Found at i:63989420 original size:23 final size:24
Alignment explanation
Indices: 63989394--63989440 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
63989384 TCTCGTTTCC
63989394 TTTCTTTACTTA-TTTCT-TTATTT
1 TTTCTTT-CTTACTTTCTCTTATTT
*
63989417 TTTCTTTTTTACTTTCTCTTATTT
1 TTTCTTTCTTACTTTCTCTTATTT
63989441 CCCATCTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 3 0.14
23 12 0.57
24 6 0.29
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTCTTTCTTACTTTCTCTTATTT
Found at i:63990158 original size:5 final size:5
Alignment explanation
Indices: 63990148--63990181 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
63990138 AAGTAACTAC
63990148 TATTA TATTA TATTA TATTA TATTA TATTA TATT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATT
63990182 GTTATAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATTA
Found at i:63993333 original size:20 final size:18
Alignment explanation
Indices: 63993298--63993339 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
63993288 TAATACACAC
63993298 ATATATATACACTTTTAT
1 ATATATATACACTTTTAT
*
63993316 ATATATATACA-TGTTTTT
1 ATATATATACACT-TTTAT
63993334 ATATAT
1 ATATAT
63993340 TTCCATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.52
Consensus pattern (18 bp):
ATATATATACACTTTTAT
Found at i:63998236 original size:10 final size:10
Alignment explanation
Indices: 63998205--63998266 Score: 58
Period size: 10 Copynumber: 6.4 Consensus size: 10
63998195 AAGAATGTTC
63998205 AAAA-GAAAA
1 AAAAGGAAAA
*
63998214 AAAA-CAAACA
1 AAAAGGAAA-A
*
63998224 AAAAGG-AAG
1 AAAAGGAAAA
*
63998233 AAAAGAAAAA
1 AAAAGGAAAA
63998243 AAAAGGAAAA
1 AAAAGGAAAA
*
63998253 AAAAGGAAAG
1 AAAAGGAAAA
63998263 AAAA
1 AAAA
63998267 TAAGAAAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
9 12 0.28
10 31 0.72
ACGTcount: A:0.81, C:0.03, G:0.16, T:0.00
Consensus pattern (10 bp):
AAAAGGAAAA
Found at i:63998243 original size:29 final size:30
Alignment explanation
Indices: 63998205--63998275 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
63998195 AAGAATGTTC
63998205 AAAAG-AAAAAAAA-CAAACAAAAAGG-AAG
1 AAAAGAAAAAAAAAGCAAA-AAAAAGGAAAG
*
63998233 AAAAGAAAAAAAAAGGAAAAAAAAGGAAAG
1 AAAAGAAAAAAAAAGCAAAAAAAAGGAAAG
* *
63998263 AAAATAAGAAAAA
1 AAAAGAAAAAAAA
63998276 TAAAAAGGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 5 0.14
29 15 0.41
30 17 0.46
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.01
Consensus pattern (30 bp):
AAAAGAAAAAAAAAGCAAAAAAAAGGAAAG
Found at i:63998255 original size:19 final size:19
Alignment explanation
Indices: 63998205--63998255 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
63998195 AAGAATGTTC
* *
63998205 AAAAGAAAAAAAACAAACA
1 AAAAGGAAAAAAACAAAAA
* *
63998224 AAAAGGAAGAAAAGAAAAA
1 AAAAGGAAAAAAACAAAAA
63998243 AAAAGGAAAAAAA
1 AAAAGGAAAAAAA
63998256 AGGAAAGAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.82, C:0.04, G:0.14, T:0.00
Consensus pattern (19 bp):
AAAAGGAAAAAAACAAAAA
Found at i:63998794 original size:108 final size:106
Alignment explanation
Indices: 63998608--63998806 Score: 256
Period size: 108 Copynumber: 1.9 Consensus size: 106
63998598 TTCTCATCGT
* * * * * *
63998608 ATCTTAGCAAAATTGCTATCTTGATTATTTATTTATTTCGAGCTTTGTTCTCAATAAAATTCCAT
1 ATCTTAGCAAAATTGCTATCCTGATTATTTATTGATTTAGAGCTCTGCTCTCAATAAAATTCCAC
63998673 CTTGTCCATTGTGATAATCCTTTTCATCTTATTCATTTTGA
66 CTTGTCCATTGTGATAATCCTTTTCATCTTATTCATTTTGA
* * * *
63998714 ATCTTAGCAAAATTTGCTATCCTGATTAATTTCTTGGTTTAGAGCTCTGCTCTCAATAAGATTTC
1 ATCTTAGCAAAA-TTGCTATCCTGATT-ATTTATTGATTTAGAGCTCTGCTCTCAATAAAATTCC
* *
63998779 ACCTT-TCCCGTTGTGATAATCTTTTTCA
64 ACCTTGT-CCATTGTGATAATCCTTTTCA
63998807 AGCATTTTCC
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
106 12 0.15
107 14 0.18
108 52 0.67
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.46
Consensus pattern (106 bp):
ATCTTAGCAAAATTGCTATCCTGATTATTTATTGATTTAGAGCTCTGCTCTCAATAAAATTCCAC
CTTGTCCATTGTGATAATCCTTTTCATCTTATTCATTTTGA
Found at i:63999739 original size:46 final size:46
Alignment explanation
Indices: 63999686--64000396 Score: 564
Period size: 46 Copynumber: 15.1 Consensus size: 46
63999676 AAATTAGAGA
63999686 GGAATAGACTAGAAGCA-A-CAGATCTTGTCTTCCTGTATTTGGCAGC
1 GGAATAGA-TAGAAG-ATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
* * *
63999732 GGAATAGATCGAAGATAGCAGATCTTGTCTTCTTGTATTTGGCAGT
1 GGAATAGATAGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
* * * * *
63999778 GGAGTAGATCA-AAGATAGTAGATCTTGTCTCCCTATATTTGGCAGT
1 GGAATAGAT-AGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
* * * *
63999824 AGAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGC
1 GGAATAGATAGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
* *
63999870 AGAGTAGATCA-AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
1 GGAATAGAT-AGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
*
63999916 -GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-
1 GGAA-TAGATAGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
* * * * ** **
63999961 TGAAGTAGATCA-AAGATAGTAGATCTTATCTTCCTGCAGATCTTATCTTCC
1 GGAA-TAGAT-AGAAGATAGCAGATCTTGTCTTCCTG--TAT-TTGGC-AGC
* * * * * *
64000012 TGTATTTGGCA-ACGGAATAGATCGAAGATAACAGATCTTGTCTTCTTGTATTTGGCAG-
1 -GGA-ATAG-ATA--G-A-AGATAGCAG-------ATCTTGTCTTCCTGTATTTGGCAGC
* * * * * *
64000070 TGAAGTAGATCGAAGATAGTAGATCTTATCTTCCTATATTTGGTAGC
1 GGAA-TAGATAGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
* * *
64000117 GGAGTAGATTGAAGATAGCAGATCTTGTCTTCCTGTATTTGACAG-
1 GGAATAGATAGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
* * * *
64000162 TGAAGTAGATCA-AAGATTGTAGATCTTATCTTCCTGTATTTGGCAGC
1 GGAA-TAGAT-AGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
* * * * *
64000209 GGAGTAGATGGAAGATAGTAGATATTGTCTTCTTGTATTTGGCAG-
1 GGAATAGATAGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
* * *
64000254 GGAAGTAGATCGAAGATAGTAGATCTTGTCTTCTTGTATTTGGCAGC
1 GGAA-TAGATAGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
* * * *
64000301 AGAGTAGATCGAAGATAGCATATCTTGTCTTCCTGTATTTGGCAGC
1 GGAATAGATAGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
* * *
64000347 GGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTAGCAGC
1 GGAATAGATAGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
64000393 GGAA
1 GGAA
64000397 CAGACTAAAA
Statistics
Matches: 543, Mismatches: 84, Indels: 76
0.77 0.12 0.11
Matches are distributed among these distances:
44 1 0.00
45 13 0.02
46 475 0.87
47 6 0.01
48 2 0.00
49 3 0.01
51 1 0.00
52 3 0.01
53 8 0.01
54 1 0.00
55 2 0.00
56 8 0.01
57 3 0.01
60 3 0.01
61 2 0.00
63 12 0.02
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (46 bp):
GGAATAGATAGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC
Found at i:63999862 original size:92 final size:92
Alignment explanation
Indices: 63999705--64000392 Score: 768
Period size: 92 Copynumber: 7.3 Consensus size: 92
63999695 TAGAAGCAAC
* * *
63999705 AGATCTTGTCTTCCTGTATTTGGCAGCGGAATAGATCGAAGATAGCAGATCTTGTCTTCTTGTAT
1 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAT
63999770 TTGGCAGTGGAGTAGATCAAAGATAGT
66 TTGGCAGTGGAGTAGATCAAAGATAGT
* * * *
63999797 AGATCTTGTCTCCCTATATTTGGCAGTAGAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTAT
1 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAT
** *
63999862 TTGGCAGCAGAGTAGATCAAAGATAGC
66 TTGGCAGTGGAGTAGATCAAAGATAGT
63999889 AGATCTTGTCTTCCTGTATTTGGCAGC-GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTA
1 AGATCTTGTCTTCCTGTATTTGGCAGCAG-AGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTA
*
63999953 TTTGGCAGTGAAGTAGATCAAAGATAGT
65 TTTGGCAGTGGAGTAGATCAAAGATAGT
* * ** ** * * * * * *
63999981 AGATCTTATCTTCCTGCAGATCTTATCTTCCTGTATTTGGCAACGGAATAGATCGAAGATAACAG
1 AGATCTTGTCTTCCTG--TAT-TTGGC-AGCAG-A-GTAG-ATC-G-A-AGATAGCAG-------
* * *
64000046 ATCTTGTCTTCTTGTATTTGGCAGTGAAGTAGATCGAAGATAGT
49 ATCTTGTCTTCCTGTATTTGGCAGTGGAGTAGATCAAAGATAGT
* * * * *
64000090 AGATCTTATCTTCCTATATTTGGTAGCGGAGTAGATTGAAGATAGCAGATCTTGTCTTCCTGTAT
1 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAT
* * *
64000155 TTGACAGTGAAGTAGATCAAAGATTGT
66 TTGGCAGTGGAGTAGATCAAAGATAGT
* * * * * *
64000182 AGATCTTATCTTCCTGTATTTGGCAGCGGAGTAGATGGAAGATAGTAGATATTGTCTTCTTGTAT
1 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAT
*
64000247 TTGGCAG-GGAAGTAGATCGAAGATAGT
66 TTGGCAGTGG-AGTAGATCAAAGATAGT
* *
64000274 AGATCTTGTCTTCTTGTATTTGGCAGCAGAGTAGATCGAAGATAGCATATCTTGTCTTCCTGTAT
1 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAT
* * *
64000339 TTGGCAGCGGAGTAGATCGAAGATAGC
66 TTGGCAGTGGAGTAGATCAAAGATAGT
*
64000366 AGATCTTGTCTTCCTGTATTTAGCAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGC
64000393 GGAACAGACT
Statistics
Matches: 505, Mismatches: 71, Indels: 40
0.82 0.12 0.06
Matches are distributed among these distances:
91 2 0.00
92 404 0.80
93 2 0.00
94 2 0.00
95 3 0.01
96 1 0.00
97 2 0.00
98 2 0.00
99 9 0.02
100 2 0.00
101 2 0.00
102 8 0.02
103 2 0.00
104 1 0.00
105 2 0.00
106 2 0.00
107 2 0.00
109 57 0.11
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (92 bp):
AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAT
TTGGCAGTGGAGTAGATCAAAGATAGT
Found at i:63999955 original size:138 final size:139
Alignment explanation
Indices: 63999705--64000396 Score: 782
Period size: 138 Copynumber: 4.9 Consensus size: 139
63999695 TAGAAGCAAC
* * * *
63999705 AGATCTTGTCTTCCTGTATTTGGCAGCGGAATAGATCGAAGATAGCAGATCTTGTCTTCTTGTAT
1 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
* * * * *
63999770 TTGGCAGTGGAGTAGATCAAAGATAGTAGATCTTGTCTCCCTATATTTGGCAGTAG-AGTAGATC
66 TTGGCAGCGGAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGTGGAAGTAGATC
63999834 GAAGATAGT
131 GAAGATAGT
63999843 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
1 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
* *
63999908 TTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGT-GAAGTAGATC
66 TTGGCAGCGGAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGTGGAAGTAGATC
*
63999972 AAAGATAGT
131 GAAGATAGT
* * ** ** * * * *
63999981 AGATCTTATCTTCCTGCAGATCTTATCTTCCTGTATTTGGCAACGGAATAGATCGAAGATAACAG
1 AGATCTTGTCTTCCTG--TAT-TTGGC-AGCAG-A-GTAG-ATC--AA-AGAT---AG----CAG
* * * * *
64000046 ATCTTGTCTTCTTGTATTTGGCAGTGAAGTAGATCGAAGATAGTAGATCTTATCTTCCTATATTT
49 ATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTATTT
* * * *
64000111 GGTAGCGG-AGTAGATTGAAGATAGC
114 GGCAGTGGAAGTAGATCGAAGATAGT
* * * * *
64000136 AGATCTTGTCTTCCTGTATTTGACAG-TGAAGTAGATCAAAGATTGTAGATCTTATCTTCCTGTA
1 AGATCTTGTCTTCCTGTATTTGGCAGCAG-AGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTA
* * *
64000200 TTTGGCAGCGGAGTAGATGGAAGATAGTAGATATTGTCTTCTTGTATTTGGCAG-GGAAGTAGAT
65 TTTGGCAGCGGAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGTGGAAGTAGAT
64000264 CGAAGATAGT
130 CGAAGATAGT
* * *
64000274 AGATCTTGTCTTCTTGTATTTGGCAGCAGAGTAGATCGAAGATAGCATATCTTGTCTTCCTGTAT
1 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
* * *
64000339 TTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTAGCAGCGGAA
66 TTGGCAGCGGAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGTGGAA
64000397 CAGACTAAAA
Statistics
Matches: 464, Mismatches: 68, Indels: 43
0.81 0.12 0.07
Matches are distributed among these distances:
137 3 0.01
138 320 0.69
139 5 0.01
140 2 0.00
141 3 0.01
142 3 0.01
143 1 0.00
144 2 0.00
145 6 0.01
146 2 0.00
147 2 0.00
148 6 0.01
149 2 0.00
150 3 0.01
151 2 0.00
152 3 0.01
153 2 0.00
155 96 0.21
156 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.34
Consensus pattern (139 bp):
AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
TTGGCAGCGGAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGTGGAAGTAGATC
GAAGATAGT
Found at i:64000003 original size:17 final size:17
Alignment explanation
Indices: 63999981--64000013 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
63999971 CAAAGATAGT
63999981 AGATCTTATCTTCCTGC
1 AGATCTTATCTTCCTGC
63999998 AGATCTTATCTTCCTG
1 AGATCTTATCTTCCTG
64000014 TATTTGGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.27, G:0.12, T:0.42
Consensus pattern (17 bp):
AGATCTTATCTTCCTGC
Found at i:64000014 original size:63 final size:63
Alignment explanation
Indices: 63999933--64000056 Score: 171
Period size: 63 Copynumber: 2.0 Consensus size: 63
63999923 ATCGAAGATA
* **
63999933 GCAGATCTTGTCTTCCTGTATTTGGC-A-GTGAAGTAGATCAAAGATAGTAGATCTTATCTTCCT
1 GCAGATCTTATCTTCCTGTATTTGGCAACG-GAA-TAGATCAAAGATAACAGATCTTATCTTCCT
* *
63999996 GCAGATCTTATCTTCCTGTATTTGGCAACGGAATAGATCGAAGATAACAGATCTTGTCTTC
1 GCAGATCTTATCTTCCTGTATTTGGCAACGGAATAGATCAAAGATAACAGATCTTATCTTC
64000057 TTGTATTTGG
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
63 49 0.91
64 4 0.07
65 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (63 bp):
GCAGATCTTATCTTCCTGTATTTGGCAACGGAATAGATCAAAGATAACAGATCTTATCTTCCT
Found at i:64000033 original size:109 final size:109
Alignment explanation
Indices: 63999887--64000104 Score: 375
Period size: 109 Copynumber: 2.0 Consensus size: 109
63999877 ATCAAAGATA
* * *
63999887 GCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGT
1 GCAGATCTTATCTTCCTGTATTTGGCAACGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGT
63999952 ATTTGGCAGTGAAGTAGATCAAAGATAGTAGATCTTATCTTCCT
66 ATTTGGCAGTGAAGTAGATCAAAGATAGTAGATCTTATCTTCCT
*
63999996 GCAGATCTTATCTTCCTGTATTTGGCAACGGAA-TAGATCGAAGATAACAGATCTTGTCTTCTTG
1 GCAGATCTTATCTTCCTGTATTTGGCAAC-GAAGTAGATCGAAGATAACAGATCTTGTCTTCCTG
*
64000060 TATTTGGCAGTGAAGTAGATCGAAGATAGTAGATCTTATCTTCCT
65 TATTTGGCAGTGAAGTAGATCAAAGATAGTAGATCTTATCTTCCT
64000105 ATATTTGGTA
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
109 100 0.97
110 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (109 bp):
GCAGATCTTATCTTCCTGTATTTGGCAACGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGT
ATTTGGCAGTGAAGTAGATCAAAGATAGTAGATCTTATCTTCCT
Found at i:64000239 original size:293 final size:293
Alignment explanation
Indices: 63999704--64000286 Score: 925
Period size: 293 Copynumber: 2.0 Consensus size: 293
63999694 CTAGAAGCAA
* * *
63999704 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAATAGATCGAAGATAGCAGATCTTGTCTTCTTGTA
1 CAGATCTTATCTTCCTGTATTTGGCAACGGAATAGATCGAAGATAACAGATCTTGTCTTCTTGTA
* * *
63999769 TTTGGCAGTGGAGTAGATCAAAGATAGTAGATCTTGTCTCCCTATATTTGGCAGTAGAGTAGATC
66 TTTGGCAGTGAAGTAGATCAAAGATAGTAGATCTTATCTCCCTATATTTGGCAGCAGAGTAGATC
* * *
63999834 GAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCAAAGATAGCAGATCTTGTC
131 GAAGATAGCAGATCTTGTCTTCCTGTATTTGACAGCAGAGTAGATCAAAGATAGCAGATCTTATC
* *
63999899 TTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGTGA
196 TTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGCAGATATTGTCTTCCTGTATTTGGCAGGGA
63999964 AGTAGATCAAAGATAGTAGATCTTATCTTCCTG
261 AGTAGATCAAAGATAGTAGATCTTATCTTCCTG
63999997 CAGATCTTATCTTCCTGTATTTGGCAACGGAATAGATCGAAGATAACAGATCTTGTCTTCTTGTA
1 CAGATCTTATCTTCCTGTATTTGGCAACGGAATAGATCGAAGATAACAGATCTTGTCTTCTTGTA
* * * * *
64000062 TTTGGCAGTGAAGTAGATCGAAGATAGTAGATCTTATCTTCCTATATTTGGTAGCGGAGTAGATT
66 TTTGGCAGTGAAGTAGATCAAAGATAGTAGATCTTATCTCCCTATATTTGGCAGCAGAGTAGATC
* * *
64000127 GAAGATAGCAGATCTTGTCTTCCTGTATTTGACAG-TGAAGTAGATCAAAGATTGTAGATCTTAT
131 GAAGATAGCAGATCTTGTCTTCCTGTATTTGACAGCAG-AGTAGATCAAAGATAGCAGATCTTAT
* * * *
64000191 CTTCCTGTATTTGGCAGCGGAGTAGATGGAAGATAGTAGATATTGTCTTCTTGTATTTGGCAGGG
195 CTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGCAGATATTGTCTTCCTGTATTTGGCAGGG
* *
64000256 AAGTAGATCGAAGATAGTAGATCTTGTCTTC
260 AAGTAGATCAAAGATAGTAGATCTTATCTTC
64000287 TTGTATTTGG
Statistics
Matches: 264, Mismatches: 25, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
292 1 0.00
293 263 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (293 bp):
CAGATCTTATCTTCCTGTATTTGGCAACGGAATAGATCGAAGATAACAGATCTTGTCTTCTTGTA
TTTGGCAGTGAAGTAGATCAAAGATAGTAGATCTTATCTCCCTATATTTGGCAGCAGAGTAGATC
GAAGATAGCAGATCTTGTCTTCCTGTATTTGACAGCAGAGTAGATCAAAGATAGCAGATCTTATC
TTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGCAGATATTGTCTTCCTGTATTTGGCAGGGA
AGTAGATCAAAGATAGTAGATCTTATCTTCCTG
Found at i:64000538 original size:44 final size:43
Alignment explanation
Indices: 64000460--64000570 Score: 116
Period size: 44 Copynumber: 2.5 Consensus size: 43
64000450 AGATACAAAC
*
64000460 CTTATCTCCCCGAAGTTGCAGTGGAGCAGGTTGAAATTACAAGT
1 CTTATCT-CCTGAAGTTGCAGTGGAGCAGGTTGAAATTACAAGT
* * *
64000504 CTTATCTCCATGAAGTTGCAGTGGAG-TGGATTGAATTTACTAGT
1 CTTATCTCC-TGAAGTTGCAGTGGAGCAGG-TTGAAATTACAAGT
** *
64000548 CCAATCTTCCTGAAGTTACAGTG
1 CTTATC-TCCTGAAGTTGCAGTG
64000571 AAGCGAATTA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
43 4 0.07
44 50 0.88
45 3 0.05
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (43 bp):
CTTATCTCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACAAGT
Found at i:64000775 original size:44 final size:43
Alignment explanation
Indices: 64000727--64000855 Score: 120
Period size: 42 Copynumber: 3.0 Consensus size: 43
64000717 TGGAGCAGGT
* * *
64000727 TGAAGATATAAGTCCTATTTCCATGAAGTTGCAGTGGAGTAGAC
1 TGAAG-TATAAGTCCTATTTCCATAAAGTTGCAGTGGAGCAAAC
* * *
64000771 TGAAG-ATGAGT-CTCATTTCCTTAAAGTTGCAGAGGAGCAAAC
1 TGAAGTATAAGTCCT-ATTTCCATAAAGTTGCAGTGGAGCAAAC
* * *
64000813 TGAAGCTACTAA-TCCTATCTCCCTAAAGTTGTAGTGGAGCAAA
1 TGAAG-TA-TAAGTCCTATTTCCATAAAGTTGCAGTGGAGCAAA
64000856 TTAAAACGAT
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
41 2 0.03
42 33 0.48
44 30 0.43
45 4 0.06
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (43 bp):
TGAAGTATAAGTCCTATTTCCATAAAGTTGCAGTGGAGCAAAC
Found at i:64002723 original size:58 final size:55
Alignment explanation
Indices: 64002661--64002772 Score: 127
Period size: 56 Copynumber: 2.0 Consensus size: 55
64002651 AGGTTTAATT
* *
64002661 ATATATATATG-TATACGTACATATATTTGATCTTATATATTTTATAATTTTTATATAC
1 ATATATATATGCTATACGCACATAT-TTT--T-TTATATATTTTATAATTTATATATAC
* * *
64002719 ATATATATGTGTCTATATGCACATATTTTTTTTTATATTTTATAATTTATATAT
1 ATATATATATG-CTATACGCACATATTTTTTTATATATTTTATAATTTATATAT
64002773 GCCTATTTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
56 22 0.47
57 1 0.02
58 10 0.21
59 3 0.06
60 11 0.23
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.54
Consensus pattern (55 bp):
ATATATATATGCTATACGCACATATTTTTTTATATATTTTATAATTTATATATAC
Found at i:64002837 original size:16 final size:16
Alignment explanation
Indices: 64002816--64002855 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
64002806 TAATACACAC
64002816 ATATATATACACT-TTT
1 ATATATATACA-TGTTT
64002832 ATATATATACATGTTT
1 ATATATATACATGTTT
*
64002848 TTATATAT
1 ATATATAT
64002856 TTCCATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 1 0.05
16 21 0.95
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.53
Consensus pattern (16 bp):
ATATATATACATGTTT
Found at i:64002849 original size:18 final size:17
Alignment explanation
Indices: 64002816--64002878 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 17
64002806 TAATACACAC
*
64002816 ATATATATACA-CTTTT
1 ATATATATACATATTTT
*
64002832 ATATATATACATGTTTTT
1 ATATATATACAT-ATTTT
* *
64002850 ATATATTTCCATAATTTT
1 ATATATATACAT-ATTTT
*
64002868 ATGTATATACA
1 ATATATATACA
64002879 CATATATATG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
16 11 0.30
18 26 0.70
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.51
Consensus pattern (17 bp):
ATATATATACATATTTT
Found at i:64003712 original size:29 final size:29
Alignment explanation
Indices: 64003679--64003894 Score: 218
Period size: 29 Copynumber: 7.3 Consensus size: 29
64003669 AAAAAATAAA
*
64003679 AAAATTACATTTTGCCCCCTAAACTTTTT
1 AAAATTACATTTTGACCCCTAAACTTTTT
* * *
64003708 GAAATTACATTTTGACCCTTAAAATTTTT
1 AAAATTACATTTTGACCCCTAAACTTTTT
* * *
64003737 CAAAATTACATTTTTACCACTAAAATTTTT
1 -AAAATTACATTTTGACCCCTAAACTTTTT
* * *
64003767 GAAATTATATTTTGACCCCTAAACTTTCTC
1 AAAATTACATTTTGACCCCTAAACTTT-TT
* * * *
64003797 AAAATTATATTTTTACCACTACACTTTTT
1 AAAATTACATTTTGACCCCTAAACTTTTT
* * *
64003826 GAAATTATATTTTGACCCCTAAACTTTCTC
1 AAAATTACATTTTGACCCCTAAACTTT-TT
*
64003856 AAAATTACATTTTGACCCC-AAAATTTTCT
1 AAAATTACATTTTGACCCCTAAACTTTT-T
64003885 CAAAATTACA
1 -AAAATTACA
64003895 CTAGCCCCAG
Statistics
Matches: 154, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
28 1 0.01
29 77 0.50
30 76 0.49
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (29 bp):
AAAATTACATTTTGACCCCTAAACTTTTT
Found at i:64003750 original size:59 final size:59
Alignment explanation
Indices: 64003679--64003882 Score: 284
Period size: 59 Copynumber: 3.5 Consensus size: 59
64003669 AAAAAATAAA
* * * * * * *
64003679 AAAATTACATTTTGCCCCCTAAACTTTTTGAAATTACATTTTGACCCTTAAAATTTTTC
1 AAAATTACATTTTGACCACTAAAATTTTTGAAATTATATTTTGACCCCTAAACTTTCTC
*
64003738 AAAATTACATTTTTACCACTAAAATTTTTGAAATTATATTTTGACCCCTAAACTTTCTC
1 AAAATTACATTTTGACCACTAAAATTTTTGAAATTATATTTTGACCCCTAAACTTTCTC
* * * *
64003797 AAAATTATATTTTTACCACTACACTTTTTGAAATTATATTTTGACCCCTAAACTTTCTC
1 AAAATTACATTTTGACCACTAAAATTTTTGAAATTATATTTTGACCCCTAAACTTTCTC
*
64003856 AAAATTACATTTTGACC-CCAAAATTTT
1 AAAATTACATTTTGACCACTAAAATTTT
64003883 CTCAAAATTA
Statistics
Matches: 129, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
58 7 0.05
59 122 0.95
ACGTcount: A:0.34, C:0.20, G:0.04, T:0.42
Consensus pattern (59 bp):
AAAATTACATTTTGACCACTAAAATTTTTGAAATTATATTTTGACCCCTAAACTTTCTC
Found at i:64004236 original size:3 final size:3
Alignment explanation
Indices: 64004228--64004296 Score: 50
Period size: 3 Copynumber: 21.3 Consensus size: 3
64004218 GGCCGAACGG
* *
64004228 AGA AGA AGAA AGA AAA AG- AGAA AGAA AGA AGGA GGA AGA AGGA AGA
1 AGA AGA AG-A AGA AGA AGA AG-A AG-A AGA A-GA AGA AGA A-GA AGA
*
64004274 AGA AGA AGA AGAA AGA AAA AGA A
1 AGA AGA AGA AG-A AGA AGA AGA A
64004297 AAAATAAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
2 2 0.04
3 35 0.65
4 17 0.31
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:64004246 original size:10 final size:10
Alignment explanation
Indices: 64004228--64004297 Score: 63
Period size: 10 Copynumber: 7.1 Consensus size: 10
64004218 GGCCGAACGG
64004228 AGAAGAAGAA
1 AGAAGAAGAA
* *
64004238 AGAAAAAGAG
1 AGAAGAAGAA
64004248 A-AAGAAAGAA
1 AGAAG-AAGAA
* *
64004258 GGAGGAAGAA
1 AGAAGAAGAA
*
64004268 GGAAGAAG-A
1 AGAAGAAGAA
64004277 AGAAGAAGAA
1 AGAAGAAGAA
*
64004287 AGAAAAAGAA
1 AGAAGAAGAA
64004297 A
1 A
64004298 AAATAAAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
9 10 0.21
10 36 0.75
11 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (10 bp):
AGAAGAAGAA
Found at i:64004566 original size:19 final size:17
Alignment explanation
Indices: 64004534--64004578 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 17
64004524 AGCAGAGAGA
64004534 AAAAAAAAGGGAGAAAAAAG
1 AAAAAAAA--GAG-AAAAAG
64004554 AAGAAAAAAGAGAAAAAG
1 AA-AAAAAAGAGAAAAAG
64004572 AAAAAAA
1 AAAAAAA
64004579 GAGTTTCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 5 0.21
18 8 0.33
19 3 0.12
20 2 0.08
21 6 0.25
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAGAAAAAG
Found at i:64004768 original size:21 final size:20
Alignment explanation
Indices: 64004744--64004792 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
64004734 GTATTTACAT
*
64004744 TTTTAATTTAATTTAATTCAA
1 TTTTAATTTAATTTAAAT-AA
*
64004765 TTTTAATTTTATTTTAAATAA
1 TTTTAA-TTTAATTTAAATAA
64004786 TTTTAAT
1 TTTTAAT
64004793 AAATAAGGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 14 0.56
22 10 0.40
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTAATTTAATTTAAATAA
Found at i:64005010 original size:17 final size:17
Alignment explanation
Indices: 64004974--64005433 Score: 244
Period size: 18 Copynumber: 25.9 Consensus size: 17
64004964 ATAATTTTTC
*
64004974 TCGTGTTTTAAAAAATAT
1 TCGTGTTTTCAAAAAT-T
64004992 TCGTGTTTTCAAAAAATT
1 TCGTGTTTTC-AAAAATT
* * *
64005010 CCAT-TTTTCAAAATTT
1 TCGTGTTTTCAAAAATT
64005026 TCCGTGTTTTCTAAAAATT
1 T-CGTGTTTTC-AAAAATT
* * *
64005045 CCCATG-TTTCTAAAATT
1 -TCGTGTTTTCAAAAATT
*
64005062 T-TTGTGTTTCAAAAATTT
1 TCGTGT-TTTCAAAAA-TT
* *
64005080 TTGTGTTTT-TAAAATT
1 TCGTGTTTTCAAAAATT
** *
64005096 TTTTGAATTTTCAACAATT
1 TCGTG--TTTTCAAAAATT
*
64005115 CTCGTG-TTTCACAAATTT
1 -TCGTGTTTTCA-AAAATT
64005133 TCGTGTTTT-AAAAATTTT
1 TCGTGTTTTCAAAAA--TT
** *
64005151 TTATGTTTTAAAAAAAATT
1 TCGTGTTTT--CAAAAATT
64005170 CTCGTG-TTTCAAAAATT
1 -TCGTGTTTTCAAAAATT
*
64005187 GTCGTGTTTTAAAAAATTT
1 -TCGTGTTTTCAAAAA-TT
* *
64005206 TCATG-TTTCTAAAATTT
1 TCGTGTTTTC-AAAAATT
*
64005223 TCGT-ATTTCAAAAATTT
1 TCGTGTTTTCAAAAA-TT
* *
64005240 TCATGTTTTCAAAATTT
1 TCGTGTTTTCAAAAATT
64005257 TGCGTG-TTTCAAAAATCT
1 T-CGTGTTTTCAAAAAT-T
*
64005275 TCATGTTTTCAAAAATT
1 TCGTGTTTTCAAAAATT
*
64005292 CCGATG-TTTCAAAAAATT
1 TCG-TGTTTTC-AAAAATT
*
64005310 CTCGTGTTTTAAAAAATT
1 -TCGTGTTTTCAAAAATT
* *
64005328 TCCGAGTTTTAAAAAAATTT
1 T-CGTGTTTT-CAAAAA-TT
*
64005348 TCGTGTTTTCAAAAGTTTT
1 TCGTGTTTTCAAAA--ATT
* *
64005367 TCGT-ATTTCAAAAATCC
1 TCGTGTTTTCAAAAAT-T
64005384 TCGTGTTTTCAAAAATT
1 TCGTGTTTTCAAAAATT
*
64005401 TCGGTGTTTT-AAAATTT
1 TC-GTGTTTTCAAAAATT
64005418 TCGTGTTTTCGAAAAA
1 TCGTGTTTTC-AAAAA
64005434 AAATCTTTTC
Statistics
Matches: 342, Mismatches: 56, Indels: 88
0.70 0.12 0.18
Matches are distributed among these distances:
15 2 0.01
16 27 0.08
17 101 0.30
18 144 0.42
19 54 0.16
20 9 0.03
21 5 0.01
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (17 bp):
TCGTGTTTTCAAAAATT
Found at i:64005032 original size:35 final size:36
Alignment explanation
Indices: 64004912--64005434 Score: 156
Period size: 35 Copynumber: 14.5 Consensus size: 36
64004902 ATTCAAAACA
*
64004912 TTTCGTGTTTTCACAAAAAATTTCCATGTTT-TAAAAT
1 TTTCGTGTTTT--CAAAAAATTCCCATGTTTCTAAAAT
** * *
64004949 TTTCGTGGCTTCAAAATAATTTTTCTCGTGTTT-TAAAAAAT
1 TTTCGTGTTTTCAAAA-AA---TTCCCATGTTTCT--AAAAT
* *
64004990 ATTCGTGTTTTCAAAAAATT-CCATTTTTC-AAAAT
1 TTTCGTGTTTTCAAAAAATTCCCATGTTTCTAAAAT
*
64005024 TTTCCGTGTTTTCTAAAAATTCCCATGTTTCTAAAAT
1 TTT-CGTGTTTTCAAAAAATTCCCATGTTTCTAAAAT
* **** *
64005061 TTTTGTG-TTTC-AAAAATTTTTGTGTTTTTAAAAT
1 TTTCGTGTTTTCAAAAAATTCCCATGTTTCTAAAAT
* * * *
64005095 TTT-TTGAATTTTC-AACAATTCTCGTGTTTC-ACAAAT
1 TTTCGTG--TTTTCAAAAAATTCCCATGTTTCTA-AAAT
* ***
64005131 TTTCGTGTTTT-AAAAATTTTTTATGTTT-TAAAAAAAAT
1 TTTCGTGTTTTCAAAAAATTCCCATGTTTCT----AAAAT
* ** *
64005169 TCTCGTG-TTTC-AAAAATTGTCGTGTTT-TAAAAAAT
1 TTTCGTGTTTTCAAAAAATTCCCATGTTTCT--AAAAT
* * ** * * *
64005204 TTTCATG-TTTC-TAAAATTTTCGTATTTCAAAAAT
1 TTTCGTGTTTTCAAAAAATTCCCATGTTTCTAAAAT
* * ** * *
64005238 TTTCATGTTTTC-AAAATTTTGCGTGTTTCAAAAAT
1 TTTCGTGTTTTCAAAAAATTCCCATGTTTCTAAAAT
* * * *
64005273 CTTCATGTTTTC-AAAAATTCCGATGTTTCAAAAAAT
1 TTTCGTGTTTTCAAAAAATTCCCATGTTTC-TAAAAT
* *
64005309 TCTCGTGTTTT-AAAAAATTTCCGA-GTTT-TAAAAAAAT
1 TTTCGTGTTTTCAAAAAA-TTCCCATGTTTCT---AAAAT
** ** * * *
64005346 TTTCGTGTTTTCAAAAGTTTTTCGTATTTCAAAAAT
1 TTTCGTGTTTTCAAAAAATTCCCATGTTTCTAAAAT
** * **
64005382 CCTCGTGTTTTC-AAAAATTTCGGTGTTT-TAAAAT
1 TTTCGTGTTTTCAAAAAATTCCCATGTTTCTAAAAT
64005416 TTTCGTGTTTTCGAAAAAA
1 TTTCGTGTTTTC-AAAAAA
64005435 AATCTTTTCT
Statistics
Matches: 376, Mismatches: 75, Indels: 71
0.72 0.14 0.14
Matches are distributed among these distances:
33 2 0.01
34 55 0.15
35 127 0.34
36 85 0.23
37 60 0.16
38 17 0.05
39 10 0.03
40 2 0.01
41 18 0.05
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (36 bp):
TTTCGTGTTTTCAAAAAATTCCCATGTTTCTAAAAT
Found at i:64005122 original size:53 final size:51
Alignment explanation
Indices: 64005051--64005257 Score: 191
Period size: 53 Copynumber: 3.9 Consensus size: 51
64005041 AATTCCCATG
* * *
64005051 TTTCTAAAATTTTTGTGTTTCAAAAATTTTTGTGTTTTTAAAATTTTTTGAAT
1 TTTC-AAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTTAAAATTTTTT-AAT
* * *
64005104 TTTCAACAATTCTCGTGTTTCACAAATTTTCGTGTTTTAAAAATTTTTTATGT
1 TTTCAA-AATTCTCGTGTTTCAAAAATTTTCGTGTTTTTAAAATTTTTTA-AT
* * ** *
64005157 TTTAAAAAAAATTCTCGTGTTTCAAAAATTGTCGTG-TTTTAAAAAATTTTCAT
1 TTT---CAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTTAAAATTTTTTAAT
* * * *
64005210 GTTTCTAAAATTTTCGTATTTCAAAAATTTTCATGTTTTCAAAATTTT
1 -TTTC-AAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTTAAAATTTT
64005258 GCGTGTTTCA
Statistics
Matches: 124, Mismatches: 22, Indels: 16
0.77 0.14 0.10
Matches are distributed among these distances:
52 28 0.23
53 55 0.44
54 14 0.11
55 25 0.20
56 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (51 bp):
TTTCAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTTAAAATTTTTTAAT
Found at i:64011706 original size:78 final size:78
Alignment explanation
Indices: 64011525--64012351 Score: 1002
Period size: 78 Copynumber: 10.7 Consensus size: 78
64011515 CAAGAAATAT
* ** * **** **
64011525 TTTTCAATTTCTGTTTTTTTAAAATCAACTCATAATGCGAGAAACAAGTTGAGCCTCGG-GTCAT
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACAT
64011589 GCCGAGGTATTTC
66 GCCGAGGTATTTC
*
64011602 TTTTAAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACAT
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACAT
*
64011667 GTCGAGGTATTTC
66 GCCGAGGTATTTC
* * * *
64011680 GTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGTCACAT
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACAT
64011745 GCCGAGGTATTTC
66 GCCGAGGTATTTC
* * *
64011758 TTTTATATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCAC-
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCGGACACA
*
64011822 -GCTGAGG-A----
65 TGCCGAGGTATTTC
* *** * * *
64011830 ATTTACAATTTCTGTTTTTTTTAATTCAACTCATATTGCGAGAGTTGAGTTGAGCCTTGGACACA
1 TTTTA-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACA
*
64011895 TGACGAGGTATTTC
65 TGCCGAGGTATTTC
* * * *
64011909 TTTTAAATTTCTATTCTTCAAAAATCAACTCATAATGCGAGAAGTGAGTTGAGCCTCGGACACAT
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACAT
64011974 GCCGAGGTATTTC
66 GCCGAGGTATTTC
* * * *
64011987 GTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAAGT-ACGTTGAGCCTCGGTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGA-GTTGAGCCTCGGACACA
*
64012051 TGCCGAGGTACTTC
65 TGCCGAGGTATTTC
* * *
64012065 TTTTATATTTCTGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC-
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACA
* *
64012129 -GCTGAGG-A-AT-
65 TGCCGAGGTATTTC
*** *
64012139 TTTT-AATTTCTGTTTTTTTTAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGACACAT
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACAT
* *
64012203 ACTGAGGTATTTC
66 GCCGAGGTATTTC
* * *
64012216 TTTTAAATTTCTGTTCTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGAACACAT
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACAT
*
64012281 GCCGACGTATTTC
66 GCCGAGGTATTTC
*
64012294 TTTTAAATTTCT-TATTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCT
1 TTTTAAATTTCTGT-TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
64012352 TGAGTCACGT
Statistics
Matches: 647, Mismatches: 81, Indels: 41
0.84 0.11 0.05
Matches are distributed among these distances:
72 15 0.02
73 90 0.14
74 15 0.02
75 3 0.00
76 3 0.00
77 68 0.11
78 400 0.62
79 18 0.03
80 35 0.05
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (78 bp):
TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACAT
GCCGAGGTATTTC
Found at i:64011936 original size:229 final size:233
Alignment explanation
Indices: 64011525--64012351 Score: 932
Period size: 229 Copynumber: 3.6 Consensus size: 233
64011515 CAAGAAATAT
* ** * ****
64011525 TTTTCAATTTCTGTTTTTTTAAAATCAACTCATAATGCGAGAAACAAGTTGAGCC-TCGGGTCA-
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTC-GGTCAC
* ** ** * *
64011588 TGCCGAGGTATTTCTTTTAAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
65 AGCCGAGGTACATCTTACATATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
64011653 AGCCTCGGACACATGTCGAGGTATTTCGTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGC
130 AGCCTCGGACACATG-CGAGGTATTTCTTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGC
*
64011718 GAGAAGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTC
194 GAGAAGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTC
* *
64011758 TTTTATATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCAC-
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCGGTCACA
* *** * *
64011822 GCTGAGG-A-AT-TTACA-ATTTCTGTTTTTTTTAATTCAACTCATATTGCGAGAGTTGAGTTGA
66 GCCGAGGTACATCTTACATATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
64011883 GCCTTGGACACATGACGAGGTATTTCTTTTAAATTTCTATTCTTCAAAAATCAACTCATAATGCG
131 GCCTCGGACACATG-CGAGGTATTTCTTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCG
64011948 AGAAGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTC
195 AGAAGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTC
* * *
64011987 GTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAAGT-ACGTTGAGCC-TCGGTCAC
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGA-GTTGAGCCTTCGGTCAC
* ** *
64012050 ATGCCGAGGTACTTCTTTTATATTTCTGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTT
65 A-GCCGAGGTACATCTTACATATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * ***
64012115 GAGCCTCGGGTCAC--GCTGAGG-A-AT-TTTT-AATTTCTGTTTTTTTTAAATCAACTCATATT
129 GAGCCTC-GGACACATGC-GAGGTATTTCTTTTAAATTTCTATTTTTCAAAAATCAACTCATATT
* * * *
64012174 ACGAGAGGTGAGTTGAGCCTCGGACACATACTGAGGTATTTC
192 GCGAGAAGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTC
* * **
64012216 TTTTAAATTTCTGTTCTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC-TCGAACACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCGGTCACA
* ** ** * *
64012280 TGCCGACGTATTTCTTTTAAATTTCT-TATTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAG
66 -GCCGAGGTACATCTTACATATTTCTGT-TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAG
64012344 TTGAGCCT
127 TTGAGCCT
64012352 TGAGTCACGT
Statistics
Matches: 513, Mismatches: 66, Indels: 32
0.84 0.11 0.05
Matches are distributed among these distances:
228 9 0.02
229 333 0.65
230 14 0.03
231 38 0.07
232 4 0.01
233 65 0.13
234 45 0.09
235 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (233 bp):
TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCGGTCACA
GCCGAGGTACATCTTACATATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCGGACACATGCGAGGTATTTCTTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGA
GAAGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTC
Found at i:64012082 original size:307 final size:307
Alignment explanation
Indices: 64011529--64012351 Score: 1312
Period size: 307 Copynumber: 2.7 Consensus size: 307
64011519 AAATATTTTT
* * * ** ** *
64011529 CAATTTCTGTTTTTTTAAAATCAACTCATAATGCGAGAAACAAGTTGAGCCTCGG-GTCATGCCG
1 CAATTTCTGTTTTTTTTAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGACACATGACG
* * *
64011593 AGGTATTTCTTTTAAATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 AGGTATTTCTTTTAAATTTCTGTTCTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
*
64011658 CGGACACATGTCGAGGTATTTCGTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAA
131 CGGACACATGCCGAGGTATTTCGTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAA
*
64011723 GTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTATATTTCTGTTTTTCAAAAATCAACT
196 GTGAGTTGAGCCTCGGTCACATGCCGAGGTACTTCTTTTATATTTCTGTTTTTCAAAAATCAACT
*
64011788 CATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACGCTGAGGAATTTA
261 CATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGAATTTA
* * *
64011835 CAATTTCTGTTTTTTTTAATTCAACTCATATTGCGAGAGTTGAGTTGAGCCTTGGACACATGACG
1 CAATTTCTGTTTTTTTTAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGACACATGACG
* *
64011900 AGGTATTTCTTTTAAATTTCTATTCTTCAAAAATCAACTCATAATGCGAGAAGTGAGTTGAGCCT
66 AGGTATTTCTTTTAAATTTCTGTTCTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
64011965 CGGACACATGCCGAGGTATTTCGTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAA
131 CGGACACATGCCGAGGTATTTCGTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAA
*
64012030 GT-ACGTTGAGCCTCGGTCACATGCCGAGGTACTTCTTTTATATTTCTGTTTTTCAAAAATCAGC
196 GTGA-GTTGAGCCTCGGTCACATGCCGAGGTACTTCTTTTATATTTCTGTTTTTCAAAAATCAAC
*
64012094 TCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGAATTTT
260 TCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGAATTTA
* * *
64012142 TAATTTCTGTTTTTTTTAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGACACAT-ACT
1 CAATTTCTGTTTTTTTTAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGACACATGAC-
64012206 GAGGTATTTCTTTTAAATTTCTGTTCTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTCTTTTAAATTTCTGTTCTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
* * *
64012271 TCGAACACATGCCGACGTATTTCTTTTAAATTTCT-TATTTTCAAAAAAATCAACTCATATTGCG
130 TCGGACACATGCCGAGGTATTTCGTTTAAATTTCTAT-TTTTC--AAAAATCAACTCATATTGCG
* *
64012335 AGAGGCGAGTTGAGCCT
192 AGAAGTGAGTTGAGCCT
64012352 TGAGTCACGT
Statistics
Matches: 477, Mismatches: 33, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
306 51 0.11
307 392 0.82
309 33 0.07
310 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (307 bp):
CAATTTCTGTTTTTTTTAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGACACATGACG
AGGTATTTCTTTTAAATTTCTGTTCTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
CGGACACATGCCGAGGTATTTCGTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAA
GTGAGTTGAGCCTCGGTCACATGCCGAGGTACTTCTTTTATATTTCTGTTTTTCAAAAATCAACT
CATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGAATTTA
Found at i:64012660 original size:59 final size:59
Alignment explanation
Indices: 64012597--64012741 Score: 220
Period size: 59 Copynumber: 2.5 Consensus size: 59
64012587 AAAAAAATAA
* * *
64012597 AAAATTACATTTTGACCCCTAAACTTTTTGAAATTATATTTTGACTCTTAAAATTTTTC
1 AAAATTACATTTTGACCCCTAAACTTTTTGAAATTATATTTTAACTCCTAAAATTTCTC
* * *
64012656 AAAATTACATTTTTATCCCTAAACTTTTTGAAATTATATTTTAACTCCTAAACTTTCTC
1 AAAATTACATTTTGACCCCTAAACTTTTTGAAATTATATTTTAACTCCTAAAATTTCTC
*
64012715 AAAATTACATTTTGACCCC-AAAATTTT
1 AAAATTACATTTTGACCCCTAAACTTTT
64012742 CTCAAAATTA
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
58 7 0.09
59 70 0.91
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.44
Consensus pattern (59 bp):
AAAATTACATTTTGACCCCTAAACTTTTTGAAATTATATTTTAACTCCTAAAATTTCTC
Found at i:64012668 original size:30 final size:30
Alignment explanation
Indices: 64012597--64012758 Score: 161
Period size: 29 Copynumber: 5.5 Consensus size: 30
64012587 AAAAAAATAA
*
64012597 AAAATTACATTTTGACCCCTAAACTTTTT-
1 AAAATTACATTTTGACTCCTAAACTTTTTC
* * * *
64012626 GAAATTATATTTTGACTCTTAAAATTTTTC
1 AAAATTACATTTTGACTCCTAAACTTTTTC
*
64012656 AAAATTACATTTTTA-TCCCTAAACTTTTT-
1 AAAATTACATTTTGACT-CCTAAACTTTTTC
* * * *
64012685 GAAATTATATTTTAACTCCTAAACTTTCTC
1 AAAATTACATTTTGACTCCTAAACTTTTTC
* *
64012715 AAAATTACATTTTGAC-CCCAAAATTTTCTC
1 AAAATTACATTTTGACTCCTAAACTTTT-TC
*
64012745 AAAATTACACTTTG
1 AAAATTACATTTTG
64012759 GCCCTAGAAG
Statistics
Matches: 107, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
29 56 0.52
30 51 0.48
ACGTcount: A:0.35, C:0.18, G:0.04, T:0.43
Consensus pattern (30 bp):
AAAATTACATTTTGACTCCTAAACTTTTTC
Found at i:64013117 original size:18 final size:18
Alignment explanation
Indices: 64013096--64013162 Score: 84
Period size: 18 Copynumber: 3.8 Consensus size: 18
64013086 AACGGAGAAG
*
64013096 AAGAAAGCAAAAGAGAGA
1 AAGAAAGAAAAAGAGAGA
64013114 AAGAAAGAAAAAGAGAGA
1 AAGAAAGAAAAAGAGAGA
**
64013132 AAGAAAGGAGGAAGA-AG-
1 AAGAAA-GAAAAAGAGAGA
64013149 AAGAAAGAAAAAGA
1 AAGAAAGAAAAAGA
64013163 AAAAAATAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
16 6 0.14
17 6 0.14
18 25 0.58
19 6 0.14
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.00
Consensus pattern (18 bp):
AAGAAAGAAAAAGAGAGA
Found at i:64013288 original size:18 final size:18
Alignment explanation
Indices: 64013267--64013304 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
64013257 AAAAAAATTT
64013267 AAGCAAAAAAAAAAGAAA
1 AAGCAAAAAAAAAAGAAA
* *
64013285 AAGCAGAAAAAATAGAAA
1 AAGCAAAAAAAAAAGAAA
64013303 AA
1 AA
64013305 AACAGGCCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.79, C:0.05, G:0.13, T:0.03
Consensus pattern (18 bp):
AAGCAAAAAAAAAAGAAA
Found at i:64013455 original size:11 final size:10
Alignment explanation
Indices: 64013435--64013499 Score: 70
Period size: 10 Copynumber: 7.0 Consensus size: 10
64013425 CCCAGCAGAG
64013435 AGAA-AAAAA
1 AGAAGAAAAA
*
64013444 AGGGAGAAAAA
1 A-GAAGAAAAA
64013455 AGAAGAAAAA
1 AGAAGAAAAA
64013465 AGAAGAAAAA
1 AGAAGAAAAA
64013475 A-AAG-AAAA
1 AGAAGAAAAA
64013483 AG-AG-AAAA
1 AGAAGAAAAA
64013491 AGAA-AAAAA
1 AGAAGAAAAA
64013500 GAGTTTCAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
8 13 0.27
9 9 0.18
10 21 0.43
11 6 0.12
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AGAAGAAAAA
Found at i:64013467 original size:7 final size:7
Alignment explanation
Indices: 64013448--64013498 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
64013438 AAAAAAAGGG
64013448 AGAAAAA
1 AGAAAAA
*
64013455 AGAAGAA
1 AGAAAAA
*
64013462 A-AAAGA
1 AGAAAAA
64013468 AGAAAAA
1 AGAAAAA
*
64013475 AAAGAAAA
1 AGA-AAAA
64013483 AGAGAAAA
1 AGA-AAAA
64013491 AGAAAAA
1 AGAAAAA
64013498 A
1 A
64013499 AGAGTTTCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 4 0.11
7 18 0.50
8 14 0.39
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (7 bp):
AGAAAAA
Found at i:64013501 original size:22 final size:22
Alignment explanation
Indices: 64013435--64013499 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 22
64013425 CCCAGCAGAG
* *
64013435 AGAAAAAAAAGGGAGAAAAAAGA
1 AGAAAAAAAA-AGAAAAAAAAGA
*
64013458 AGAAAAAAGAAGAAAAAAAAGA
1 AGAAAAAAAAAGAAAAAAAAGA
64013480 A-AAAGAGAAAAAGAAAAAAA
1 AGAAA-A-AAAAAGAAAAAAA
64013500 GAGTTTCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.08
22 12 0.33
23 21 0.58
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (22 bp):
AGAAAAAAAAAGAAAAAAAAGA
Found at i:64013703 original size:21 final size:22
Alignment explanation
Indices: 64013665--64013708 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
64013655 GTATTTATAT
*
64013665 TTTTAATTTAATTCAATTTTAA
1 TTTTAATTTAAATCAATTTTAA
*
64013687 TTTTATTTTAAAT-AATTTTAA
1 TTTTAATTTAAATCAATTTTAA
64013708 T
1 T
64013709 AAATAAGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTTAATTTAAATCAATTTTAA
Found at i:64013840 original size:18 final size:18
Alignment explanation
Indices: 64013819--64014348 Score: 252
Period size: 18 Copynumber: 29.5 Consensus size: 18
64013809 ATTGTAAATA
64013819 TTCAAAAAATTTCGTGTT
1 TTCAAAAAATTTCGTGTT
64013837 TTCACAAAAAATTTCCGTG-T
1 TT--CAAAAAATTT-CGTGTT
* **
64013857 TTC-AAAATTTTCGTGGC
1 TTCAAAAAATTTCGTGTT
64013874 TTCAAAATAATTTTTC-TCGTGT
1 TTCAAAA-AA--TTTCGT-GT-T
*
64013896 TTCAAAAAATATTTGTGTT
1 TTCAAAAAAT-TTCGTGTT
* *
64013915 TTCAAAAAATTCCAT-TT
1 TTCAAAAAATTTCGTGTT
*
64013932 TTC-AAAATTTTCCGTGTT
1 TTCAAAAAATTT-CGTGTT
* *
64013950 TTCTAAAAATTCTCATG-T
1 TTCAAAAAATT-TCGTGTT
* * *
64013968 TTCTAAAATTTTTGTG-T
1 TTCAAAAAATTTCGTGTT
*
64013985 TTC-AAAAATTTTGTGTT
1 TTCAAAAAATTTCGTGTT
** * *
64014002 TTCAAAATTTTTTGTATT
1 TTCAAAAAATTTCGTGTT
*
64014020 TTC-AACAATTCTCGTG-T
1 TTCAAAAAATT-TCGTGTT
* * *
64014037 TTCACAAATTTTCGTATT
1 TTCAAAAAATTTCGTGTT
**
64014055 TT-AAAAAATTTTATGTT
1 TTCAAAAAATTTCGTGTT
*
64014072 TTAAAAAAAATTCTCGTG-T
1 TT-CAAAAAATT-TCGTGTT
64014091 TTC-AAAAATTGTCGTGTT
1 TTCAAAAAATT-TCGTGTT
*
64014109 TT-AAAAAATTTTCATG-T
1 TTCAAAAAA-TTTCGTGTT
* * *
64014126 TTCTAAAATTTTCGT-AT
1 TTCAAAAAATTTCGTGTT
*
64014143 TT-AAAAAATTTTCATGTT
1 TTCAAAAAA-TTTCGTGTT
* *
64014161 TT-TAAAATTTTGCGTG-T
1 TTCAAAAAATTT-CGTGTT
64014178 TTC-AAAAATCTTCGTGTT
1 TTCAAAAAAT-TTCGTGTT
*
64014196 TTC-AAAAATTCCGATG-T
1 TTCAAAAAATTTCG-TGTT
64014213 TTCAAAAAATTCTCGTGTT
1 TTCAAAAAATT-TCGTGTT
**
64014232 TT-AAAAAATTTCCAAGTT
1 TTCAAAAAATTT-CGTGTT
64014250 TT-ATAAAAATTTTCGTGTT
1 TTCA-AAAAA-TTTCGTGTT
** *
64014269 TTCAAAATTTTTTCGT-AT
1 TTCAAAA-AATTTCGTGTT
*
64014287 TTC-AAAAATCCTCGTGTT
1 TTCAAAAAAT-TTCGTGTT
64014305 TTC-AAAAATTTCGGTGTT
1 TTCAAAAAATTTC-GTGTT
* * *
64014323 TT-GAAAATTTTTGTGTT
1 TTCAAAAAATTTCGTGTT
64014340 TTCAAAAAA
1 TTCAAAAAA
64014349 AAATCTCGTG
Statistics
Matches: 394, Mismatches: 69, Indels: 98
0.70 0.12 0.17
Matches are distributed among these distances:
16 26 0.07
17 119 0.30
18 144 0.37
19 60 0.15
20 26 0.07
21 12 0.03
22 7 0.02
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.47
Consensus pattern (18 bp):
TTCAAAAAATTTCGTGTT
Found at i:64013868 original size:17 final size:16
Alignment explanation
Indices: 64013844--64014346 Score: 157
Period size: 17 Copynumber: 28.2 Consensus size: 16
64013834 GTTTTCACAA
*
64013844 AAAATTTCCGTGTTTC
1 AAAATTTTCGTGTTTC
*
64013860 AAAATTTTCGTGGCTTC
1 AAAATTTTCGT-GTTTC
64013877 AAAATAATTTTTCTCGTGTTTC
1 --AA-AA--TTT-TCGTGTTTC
64013899 AAAAAATATTT-GTGTTTTC
1 --AAAAT-TTTCGTG-TTTC
* * * *
64013918 AAAAAATTCCATTTTTC
1 -AAAATTTTCGTGTTTC
64013935 AAAATTTTCCGTGTTTTC
1 AAAATTTT-CGTG-TTTC
* *
64013953 TAAAAATTCTCATGTTTC
1 --AAAATTTTCGTGTTTC
*
64013971 TAAAATTTTTGTGTTTC
1 -AAAATTTTCGTGTTTC
64013988 AAAAATTTT-GTGTTTTC
1 -AAAATTTTCGTG-TTTC
* *
64014005 AAAATTTTTTGTATTTTC
1 AAAA-TTTTCGT-GTTTC
*
64014023 AACAATTCTCGTGTTTC
1 AA-AATTTTCGTGTTTC
* *
64014040 ACAAATTTTCGTATTTTAA
1 A-AAATTTTCGT-GTTT-C
* *
64014059 AAAATTTT-ATGTTTTAAAA
1 AAAATTTTCGTG-TTT---C
*
64014078 AAAATTCTCGTGTTTC
1 AAAATTTTCGTGTTTC
* *
64014094 AAAAATTGTCGTGTTTTAA
1 -AAAATTTTCGTG-TTT-C
*
64014113 AAAATTTTCATGTTTC
1 AAAATTTTCGTGTTTC
* *
64014129 TAAAATTTTCGTATTTAA
1 -AAAATTTTCGTGTTT-C
* *
64014147 AAAATTTTCATGTTTTT
1 AAAATTTTCGTG-TTTC
64014164 AAAATTTTGCGTGTTTC
1 AAAATTTT-CGTGTTTC
*
64014181 AAAAATCTTCGTGTTTTC
1 -AAAATTTTCGTG-TTTC
* *
64014199 AAAAATTCCGATGTTTC
1 AAAATTTTCG-TGTTTC
* *
64014216 AAAAAATTCTCGTGTTTTAA
1 --AAAATTTTCGTG-TTT-C
* * *
64014236 AAAATTTCCAAGTTTTATA
1 AAAATTTTC--GTGTT-TC
64014255 AAAATTTTCGTGTTTTC
1 AAAATTTTCGTG-TTTC
*
64014272 AAAATTTTTTCGTATTTC
1 AAAA--TTTTCGTGTTTC
**
64014290 AAAAATCCTCGTGTTTTC
1 -AAAATTTTCGTG-TTTC
* *
64014308 AAAAATTTCGGTGTTTTG
1 AAAATTTTC-GTG-TTTC
*
64014326 AAAATTTTTGTGTTTTC
1 AAAATTTTCGTG-TTTC
64014343 AAAA
1 AAAA
64014347 AAAAATCTCG
Statistics
Matches: 370, Mismatches: 68, Indels: 97
0.69 0.13 0.18
Matches are distributed among these distances:
16 23 0.06
17 150 0.41
18 106 0.29
19 58 0.16
20 16 0.04
21 2 0.01
22 11 0.03
23 4 0.01
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (16 bp):
AAAATTTTCGTGTTTC
Found at i:64013952 original size:35 final size:36
Alignment explanation
Indices: 64013823--64014429 Score: 193
Period size: 35 Copynumber: 17.0 Consensus size: 36
64013813 TAAATATTCA
* *
64013823 AAAAATTTCGTGTTTTCACAAAAAATT-TCCGTGTTTC-
1 AAAATTTTCGTGTTTT--CAAAAAATTCT-CATGTTTCT
** * *
64013860 AAAATTTTCGTGGCTTCAAAATAATTTTTCTCGTGTTTCAA
1 AAAATTTTCGTGTTTTCAAAA-AA---TTCTCATGTTTC-T
*
64013901 AAAATATTT-GTGTTTTCAAAAAATTC-CATTTTTC-
1 AAAAT-TTTCGTGTTTTCAAAAAATTCTCATGTTTCT
*
64013935 AAAATTTTCCGTGTTTTCTAAAAATTCTCATGTTTCT
1 AAAATTTT-CGTGTTTTCAAAAAATTCTCATGTTTCT
* **
64013972 AAAATTTTTGTG-TTTC-AAAAATT-TTGTGTTT-T
1 AAAATTTTCGTGTTTTCAAAAAATTCTCATGTTTCT
* * * *
64014004 CAAAATTTTTTGTATTTTC-AACAATTCTCGTGTTTC-
1 -AAAA-TTTTCGTGTTTTCAAAAAATTCTCATGTTTCT
* *
64014040 ACAAATTTTCGTATTTT-AAAAAATT-TTATGTTT-T
1 A-AAATTTTCGTGTTTTCAAAAAATTCTCATGTTTCT
* * *
64014074 AAAAAAAATTCTCGTG-TTTC-AAAAATTGTCGTGTTT-T
1 ----AAAATTTTCGTGTTTTCAAAAAATTCTCATGTTTCT
* * * * * **
64014111 AAAAAATTTTCATG-TTTC-TAAAATTTTCGTATTTAA
1 --AAAATTTTCGTGTTTTCAAAAAATTCTCATGTTTCT
* * * * *
64014147 AAAATTTTCATGTTTT--TAAAATTTTGCGTGTTTCA
1 AAAATTTTCGTGTTTTCAAAAAATTCT-CATGTTTCT
* *
64014182 AAAATCTTCGTGTTTTC-AAAAATTC-CGATGTTTCAA
1 AAAATTTTCGTGTTTTCAAAAAATTCTC-ATGTTTC-T
* * *
64014218 AAAATTCTCGTGTTTT-AAAAAATT-TCCAAGTTTTAT
1 AAAATTTTCGTGTTTTCAAAAAATTCT-CATG-TTTCT
** * * * *
64014254 AAAAATTTTCGTGTTTTCAAAATTTTTTCGTATTTCA
1 -AAAATTTTCGTGTTTTCAAAAAATTCTCATGTTTCT
** *
64014291 AAAATCCTCGTGTTTTC-AAAAATT-TCGGTGTTT-T
1 AAAATTTTCGTGTTTTCAAAAAATTCTC-ATGTTTCT
* * *
64014325 GAAAATTTTTGTGTTTTCAAAAAAAAATCTCGTGTTTC-
1 -AAAATTTTCGTGTTTTC--AAAAAATTCTCATGTTTCT
*** * *
64014363 ATAAATTTTCGT-TTTT-TTTAAA-T-T-GTGTTTCC
1 A-AAATTTTCGTGTTTTCAAAAAATTCTCATGTTTCT
* **
64014395 AAAATTCTCGTGTTTAAAAAAAATTCTCATGTTTC
1 AAAATTTTCGTGTTTTCAAAAAATTCTCATGTTTC
64014430 AATCGGATCG
Statistics
Matches: 448, Mismatches: 69, Indels: 107
0.72 0.11 0.17
Matches are distributed among these distances:
31 16 0.04
32 6 0.01
33 17 0.04
34 53 0.12
35 137 0.31
36 89 0.20
37 67 0.15
38 29 0.06
39 13 0.03
40 3 0.01
41 15 0.03
42 3 0.01
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (36 bp):
AAAATTTTCGTGTTTTCAAAAAATTCTCATGTTTCT
Found at i:64014363 original size:73 final size:73
Alignment explanation
Indices: 64014181--64014368 Score: 179
Period size: 73 Copynumber: 2.6 Consensus size: 73
64014171 TGCGTGTTTC
* * *
64014181 AAAAATCTTCGTGTTTTC-AAAAATTC-CGATGTTTCAAAAAATTCTCGTGTTTTAAAAAATTTC
1 AAAAATTTTCGTGTTTTCAAAAAAATCTCG-TGTTTC-AAAAATCCTCGTGTTTTAAAAAATTTC
64014244 CAAGTTTTAT
64 CAAGTTTTAT
*** * * *
64014254 AAAAATTTTCGTGTTTTCAAAATTTTTTCGTATTTCAAAAATCCTCGTGTTTTCAAAAATTT-C-
1 AAAAATTTTCGTGTTTTCAAAAAAATCTCGTGTTTCAAAAATCCTCGTGTTTTAAAAAATTTCCA
*
64014317 GGTGTTT-T
66 AGT-TTTAT
* * *
64014325 GAAAATTTTTGTGTTTTCAAAAAAAAATCTCGTGTTTCATAAAT
1 AAAAATTTTCGTGTTTTC--AAAAAAATCTCGTGTTTCAAAAAT
64014369 TTTCGTTTTT
Statistics
Matches: 94, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
71 19 0.20
72 4 0.04
73 59 0.63
74 10 0.11
75 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.44
Consensus pattern (73 bp):
AAAAATTTTCGTGTTTTCAAAAAAATCTCGTGTTTCAAAAATCCTCGTGTTTTAAAAAATTTCCA
AGTTTTAT
Found at i:64016314 original size:19 final size:20
Alignment explanation
Indices: 64016292--64016343 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
64016282 AAATAGGAGG
64016292 ATATTTTTTAAAATTTTA-A
1 ATATTTTTTAAAATTTTATA
** *
64016311 ATATTTTTTGGATTTTTATA
1 ATATTTTTTAAAATTTTATA
64016331 A-ATTTTTTAAAAT
1 ATATTTTTTAAAAT
64016344 AAATTTTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 24 0.92
20 2 0.08
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (20 bp):
ATATTTTTTAAAATTTTATA
Found at i:64018115 original size:13 final size:13
Alignment explanation
Indices: 64018097--64018135 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
64018087 TGCACATTTT
64018097 TATATATATTATA
1 TATATATATTATA
64018110 TATATATATT-TA
1 TATATATATTATA
64018122 TATA-ATATTCATA
1 TATATATATT-ATA
64018135 T
1 T
64018136 GCATTTGCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.21
12 6 0.25
13 13 0.54
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (13 bp):
TATATATATTATA
Found at i:64026452 original size:17 final size:17
Alignment explanation
Indices: 64026430--64026464 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
64026420 TTTTCCTCTC
64026430 TTTTTTTAA-ATATTTAT
1 TTTTTTTAACAT-TTTAT
64026447 TTTTTTTAACATTTTAT
1 TTTTTTTAACATTTTAT
64026464 T
1 T
64026465 AGACCTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTTAACATTTTAT
Found at i:64031168 original size:25 final size:24
Alignment explanation
Indices: 64031132--64031203 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 24
64031122 AGGTAATAAA
64031132 TTTTATAA-AATTTTAAAAATTATAT
1 TTTTA-AATAATTTT-AAAATTATAT
64031157 TTTTAAATAA-TTT--AATTATAT
1 TTTTAAATAATTTTAAAATTATAT
**
64031178 TTTTATTTAATTTTAAGAATTATAT
1 TTTTAAATAATTTTAA-AATTATAT
64031203 T
1 T
64031204 AATTGATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
21 16 0.40
22 3 0.08
24 5 0.12
25 16 0.40
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (24 bp):
TTTTAAATAATTTTAAAATTATAT
Found at i:64031532 original size:31 final size:31
Alignment explanation
Indices: 64031494--64031553 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
64031484 GTTTAAGAAA
* * * *
64031494 CCCTTATTTGAGCATTTTTTAAAATGTTTGG
1 CCCTTATTTGAACACTTTTAAAAAGGTTTGG
64031525 CCCTTATTTGAACACTTTTAAAAAGGTTT
1 CCCTTATTTGAACACTTTTAAAAAGGTTT
64031554 ATCTTTCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (31 bp):
CCCTTATTTGAACACTTTTAAAAAGGTTTGG
Found at i:64036049 original size:13 final size:13
Alignment explanation
Indices: 64036031--64036055 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64036021 TACAAAACAT
64036031 CAAGCCCAAATTA
1 CAAGCCCAAATTA
64036044 CAAGCCCAAATT
1 CAAGCCCAAATT
64036056 TAAAACCTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.32, G:0.08, T:0.16
Consensus pattern (13 bp):
CAAGCCCAAATTA
Found at i:64038259 original size:22 final size:21
Alignment explanation
Indices: 64038228--64038272 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
64038218 TACACCAAAA
*
64038228 TAGGCTTTTAGCGGCGCTTTTT
1 TAGGCCTTTAGCGGCG-TTTTT
64038250 TAGGCCTTTAGCGGCGTTTTT
1 TAGGCCTTTAGCGGCGTTTTT
64038271 TA
1 TA
64038273 ACGCCACTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.11, C:0.18, G:0.27, T:0.44
Consensus pattern (21 bp):
TAGGCCTTTAGCGGCGTTTTT
Found at i:64038504 original size:43 final size:43
Alignment explanation
Indices: 64038343--64038547 Score: 256
Period size: 42 Copynumber: 4.8 Consensus size: 43
64038333 GCGTCGCTAA
* * *
64038343 CTTTAGCGGCGCTTTTCCCATAAACGCCGCTAAAGACCATGAT
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
* *
64038386 CTTTAGCGGCGC--TTCCCTACAAATGCCACTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTTCCC-ACAAACGCCGCTAAAGACCAAGAC
* *
64038428 CTTTAGCGGCGC-TTCCCCACAAACGTCGCTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
* * * *
64038470 CTTTAGCGACGCTTTTCCCACAAACGCCGCTAAAGA-TATTGAG
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCA-AGAC
64038513 CTTTAGCGGCGCTTTTTCCCACAAACGCCGCTAAA
1 CTTTAGCGGCGC-TTTTCCCACAAACGCCGCTAAA
64038548 AATATATCGT
Statistics
Matches: 141, Mismatches: 16, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
41 5 0.04
42 64 0.45
43 50 0.35
44 22 0.16
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.22
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
Found at i:64038886 original size:43 final size:43
Alignment explanation
Indices: 64038820--64038910 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
64038810 ATATATGCAA
* * * *
64038820 GGTAATAAAATATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
*
64038863 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
64038906 -GTAAT
1 GGTAAT
64038911 GAACTCAAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 5 0.12
43 38 0.88
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.35
Consensus pattern (43 bp):
GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:64048153 original size:41 final size:41
Alignment explanation
Indices: 64048090--64048185 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 41
64048080 TCTTCCCAAA
*
64048090 GCCGCTAAAGGCCCGAGCATTAGCGGCGCTTATTCAAAAAC
1 GCCGCTAAAGGCCCGAGAATTAGCGGCGCTTATTCAAAAAC
* *
64048131 GCCGTTAAAGGCCCGAGAATTAGCGGCGCTTTTTCAAAAAC
1 GCCGCTAAAGGCCCGAGAATTAGCGGCGCTTATTCAAAAAC
64048172 GCCGCTAAAGGCCC
1 GCCGCTAAAGGCCC
64048186 CTAAAACTCA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.28, C:0.29, G:0.25, T:0.18
Consensus pattern (41 bp):
GCCGCTAAAGGCCCGAGAATTAGCGGCGCTTATTCAAAAAC
Found at i:64048368 original size:41 final size:41
Alignment explanation
Indices: 64048240--64048372 Score: 141
Period size: 40 Copynumber: 3.3 Consensus size: 41
64048230 CACTTTTTGG
* **
64048240 AAAA-CGCCGGTAATGCTT-ATTTTTAGCGGCGTTTTCCA-
1 AAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGTTTTTTAT
* ** *
64048278 AAAAGCGCCGCTAATGCTCGACCTTTAGCAGCG-TTTTTAT
1 AAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGTTTTTTAT
*
64048318 AAAAGCGCCGCTAATGCTTGATTTTTAGTGGCGTTTTTTAT
1 AAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGTTTTTTAT
*
64048359 CCAAA-CGCCGCTAA
1 -AAAAGCGCCGCTAA
64048373 AAACGCCGCT
Statistics
Matches: 77, Mismatches: 13, Indels: 7
0.79 0.13 0.07
Matches are distributed among these distances:
38 4 0.05
39 16 0.21
40 38 0.49
41 16 0.21
42 3 0.04
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (41 bp):
AAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGTTTTTTAT
Found at i:64048378 original size:12 final size:12
Alignment explanation
Indices: 64048361--64048386 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64048351 TTTTTTATCC
64048361 AAACGCCGCTAA
1 AAACGCCGCTAA
64048373 AAACGCCGCTAA
1 AAACGCCGCTAA
64048385 AA
1 AA
64048387 GCCTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:64048971 original size:24 final size:26
Alignment explanation
Indices: 64048907--64048975 Score: 72
Period size: 24 Copynumber: 2.8 Consensus size: 26
64048897 CTTGTAACGG
* *
64048907 GAAAGCTTATCCGAGCTTAATAACAA
1 GAAAGCTCATACGAGCTTAATAACAA
* *
64048933 GAAA-CTCATAAGAGCTTAA-ATC-A
1 GAAAGCTCATACGAGCTTAATAACAA
*
64048956 GAAAGCTCATGCGAGCTTAA
1 GAAAGCTCATACGAGCTTAA
64048976 CGGGTAACTC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
23 5 0.14
24 15 0.42
25 12 0.33
26 4 0.11
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (26 bp):
GAAAGCTCATACGAGCTTAATAACAA
Found at i:64049191 original size:24 final size:23
Alignment explanation
Indices: 64049153--64049214 Score: 61
Period size: 24 Copynumber: 2.7 Consensus size: 23
64049143 GGAAGAACCA
*
64049153 TATATCGGAAAGCTCAAGAGAGCT
1 TATATCGGGAAGCTCAAGAGAG-T
* * *
64049177 TATATCGGGATGCTCATGTGAGT
1 TATATCGGGAAGCTCAAGAGAGT
* *
64049200 TATAGCGGGACGCTC
1 TATATCGGGAAGCTC
64049215 TTGCGAGCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 14 0.44
24 18 0.56
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (23 bp):
TATATCGGGAAGCTCAAGAGAGT
Found at i:64049558 original size:10 final size:11
Alignment explanation
Indices: 64049539--64049568 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
64049529 AATTTAATAA
64049539 AATTCACATTC
1 AATTCACATTC
64049550 AATTC-CATTC
1 AATTCACATTC
64049560 AATTCACAT
1 AATTCACAT
64049569 CTTAGGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (11 bp):
AATTCACATTC
Found at i:64057152 original size:22 final size:22
Alignment explanation
Indices: 64057124--64057167 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
64057114 AGTCGCCTTG
64057124 GGAAAGAGGCTACTAGTTTGCC
1 GGAAAGAGGCTACTAGTTTGCC
*
64057146 GGAAAGAGTCTACTAGTTTGCC
1 GGAAAGAGGCTACTAGTTTGCC
64057168 AAGATGAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (22 bp):
GGAAAGAGGCTACTAGTTTGCC
Found at i:64066265 original size:87 final size:84
Alignment explanation
Indices: 64066159--64066318 Score: 203
Period size: 87 Copynumber: 1.9 Consensus size: 84
64066149 GTTCATTATA
*
64066159 AAAGGTCTTATTCCCCTGAAATTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGT
1 AAAGGTCTTATTCCCCTGAAATTACAGCAGAGCAGATCGAA-ACA-AATCCTATCTCCCTGAAGT
64066224 TACAGTGGAGCGGATTAAAAT
64 TACAGTGGAGCGGATTAAAAT
* * * * * ** * *
64066245 AAAGGATCTTATTTCTCTGAAGTTACAGCAGAGCAGATCGCACCAGGTCTTATCTCCCTGAGGTT
1 AAAGG-TCTTATTCCCCTGAAATTACAGCAGAGCAGATCGAAACAAATCCTATCTCCCTGAAGTT
64066310 ACAGTGGAG
65 ACAGTGGAG
64066319 TAGACCGAAG
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
85 25 0.40
86 7 0.11
87 31 0.49
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.26
Consensus pattern (84 bp):
AAAGGTCTTATTCCCCTGAAATTACAGCAGAGCAGATCGAAACAAATCCTATCTCCCTGAAGTTA
CAGTGGAGCGGATTAAAAT
Found at i:64066491 original size:170 final size:171
Alignment explanation
Indices: 64066164--64066539 Score: 503
Period size: 170 Copynumber: 2.2 Consensus size: 171
64066154 TTATAAAAGG
* *
64066164 TCTTAT-TCCCCTGAAATTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTACA
1 TCTTATCT-CCCTGAGATTACAGCGGAGCAGATCAAAGACATAATCCTATCTCCCTGAAGTTACA
* * * *
64066228 GTGGAGCGGATTAAAATAAAGGATCTTATTTCTCTGAAGTTACAGCAGAGCAGATCGCACCAGGT
65 ATGGAGCGGATT---ATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACACCAGGT
*
64066293 CTTATCTCCCTGAGGTTACAGTGGAGTAGACC-GAAGACTTTCAGA
127 CTTATCTCCCTGAGGTTACAGTGGAGTAGACCAG-AGAATTTCAGA
* *
64066338 TCTTATCTCCCTGAGA-TATCAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTG-AGATTA
1 TCTTATCTCCCTGAGATTA-CAGCGGAGCAGATCAAAGACA-TAATCCTATCTCCCTGAAG-TTA
* *
64066401 CAATGGAGCGGA-T-TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTC
63 CAATGGAGCGGATTATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACACCAGGTC
* *
64066464 TTATTTCCCTGAGGTTACAGTGGAGTAGATCAGAGAATTTCAGA
128 TTATCTCCCTGAGGTTACAGTGGAGTAGACCAGAGAATTTCAGA
* *
64066508 TCTTATCTCCCTGAGGTTACAGTGGAGCAGAT
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGAT
64066540 TGAAGCCAGA
Statistics
Matches: 181, Mismatches: 15, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
170 111 0.61
171 3 0.02
173 2 0.01
174 35 0.19
175 30 0.17
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (171 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACATAATCCTATCTCCCTGAAGTTACAA
TGGAGCGGATTATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACACCAGGTCTTA
TCTCCCTGAGGTTACAGTGGAGTAGACCAGAGAATTTCAGA
Found at i:64066572 original size:44 final size:44
Alignment explanation
Indices: 64066164--64066622 Score: 228
Period size: 44 Copynumber: 10.6 Consensus size: 44
64066154 TTATAAAAGG
* * *
64066164 TCTTAT-TCCCCTGAAATTACAGCGGAGCAGATCGAAGACATA-A
1 TCTTATCT-CCCTGAGATTACAGTGGAGCAGATCGAAGACAGAGA
* * * * * *
64066207 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAAAATAAAGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGACAGA-GA
* * ** * *
64066251 TCTTATTTCTCTGA-AGTTACAGCAGAGCAGATCGCA-CCAG-G-
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGACAGAGA
* * * **
64066292 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGAC--AGAGA
* * *
64066338 TCTTATCTCCCTGAGA-TATCAGCGGAGCAGATCAAAGATAGTA-A
1 TCTTATCTCCCTGAGATTA-CAGTGGAGCAGATCGAAGACAG-AGA
* * * * *
64066382 TCCTATCTCCTTGAGATTACAATGGAGCGGAT--TA-A-AG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAGAGA
* * * *
64066421 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC-ACA-TCAG-G-
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGA-AGACAGAGA
* * * *
64066462 TCTTATTTCCCTGAGGTTACAGTGGAGTAGATC-AGAGA-ATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCGA-AGACA---GAGA
* * *
64066508 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAGAGA
* **
64066552 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-CTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAGAGA
*
64066595 TCCTATCTCCCTGA-AGTTACAGTGGAGC
1 TCTTATCTCCCTGAGA-TTACAGTGGAGC
64066623 GGATTAAAAT
Statistics
Matches: 314, Mismatches: 73, Indels: 58
0.71 0.16 0.13
Matches are distributed among these distances:
38 1 0.00
39 24 0.08
40 2 0.01
41 59 0.19
42 13 0.04
43 50 0.16
44 93 0.30
45 8 0.03
46 62 0.20
47 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAGAGA
Found at i:64066615 original size:87 final size:87
Alignment explanation
Indices: 64066511--64066672 Score: 218
Period size: 87 Copynumber: 1.9 Consensus size: 87
64066501 TTTCAGATCT
* * * *
64066511 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAG-GATCTTATCTCCCTGAGATTACAGC
*
64066575 GGAGCAGATCGAAGACACTATCC
65 AGAGCAGATCGAAGACACTATCC
* * * *
64066598 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCA
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
*
64066663 GAGTAGATCG
66 GAGCAGATCG
64066673 CATCAGGTCT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 62 0.97
88 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
GAGCAGATCGAAGACACTATCC
Found at i:64066776 original size:218 final size:214
Alignment explanation
Indices: 64066335--64066752 Score: 477
Period size: 218 Copynumber: 1.9 Consensus size: 214
64066325 GAAGACTTTC
* * *
64066335 AGATCTTATCTCCCTGAGATATCAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATATCAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
*
64066400 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCT
* * * * *** * * * *
64066465 TATTTCCCTGAGGTTACAGTGGAGTAGATCAGAGAATTTCAGATCTTATCTCCCTGAGGTTACAG
131 TATTTCCCTGAAGATACAGTGGAATAGATCAGAAAACAACAGATCATATCCCCCTAAAGTTACAG
* * *
64066530 TGGAGCAGATTGAAGCCAG
196 CGGAGCAAATAGAAGCCAG
*
64066549 AGATCTTATCTCCCTGAGAT-TACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCCTGA-AG
1 AGATCTTATCTCCCTGAGATAT-CAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGA-
* * * *
64066611 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCAT
64 TTACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACAT
* * *
64066676 CAGGTCTTATTTCCCTGAAGATGCAGTGGAATAGA-CTGAAAACAACA-AGTCATGTCCCCCTAA
124 CAGGTCTTATTTCCCTGAAGATACAGTGGAATAGATCAGAAAACAACAGA-TCATATCCCCCTAA
**
64066739 AGTTGTAGCGGAGC
188 AGTTACAGCGGAGC
64066753 GGACAATAGA
Statistics
Matches: 170, Mismatches: 26, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
212 1 0.01
213 29 0.17
214 41 0.24
216 1 0.01
217 27 0.16
218 71 0.42
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (214 bp):
AGATCTTATCTCCCTGAGATATCAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCT
TATTTCCCTGAAGATACAGTGGAATAGATCAGAAAACAACAGATCATATCCCCCTAAAGTTACAG
CGGAGCAAATAGAAGCCAG
Found at i:64066892 original size:44 final size:44
Alignment explanation
Indices: 64066823--64066914 Score: 112
Period size: 44 Copynumber: 2.1 Consensus size: 44
64066813 AGATGGAAGC
* *
64066823 GAAGTCACAAACCTTATCTCTCTGAAGTTGCAGTAAAGCAGGTT
1 GAAGTCACAAACCTTATCCCCCTGAAGTTGCAGTAAAGCAGGTT
* * * ***
64066867 GAAGTCACGAATCTTATCCCCCTGAAGTTGTAGTGGGGCAGGTT
1 GAAGTCACAAACCTTATCCCCCTGAAGTTGCAGTAAAGCAGGTT
64066911 GAAG
1 GAAG
64066915 ATATGAGTCC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (44 bp):
GAAGTCACAAACCTTATCCCCCTGAAGTTGCAGTAAAGCAGGTT
Found at i:64069276 original size:107 final size:107
Alignment explanation
Indices: 64069090--64069303 Score: 419
Period size: 107 Copynumber: 2.0 Consensus size: 107
64069080 ACTTTATTAC
*
64069090 ACGAATCTTTTCAAACTTAAGTTTTAAACGATCTCGGGAATAAAAAAGGATTGTGTCTTAACTCA
1 ACGAATCTTTTCAAACTTAAGTTTTAAACGATCTCGGGAATAAAAAAGGATCGTGTCTTAACTCA
64069155 CTGGACATGATCCCTTTTTTAATCCAAGATAATTAAACATCT
66 CTGGACATGATCCCTTTTTTAATCCAAGATAATTAAACATCT
64069197 ACGAATCTTTTCAAACTTAAGTTTTAAACGATCTCGGGAATAAAAAAGGATCGTGTCTTAACTCA
1 ACGAATCTTTTCAAACTTAAGTTTTAAACGATCTCGGGAATAAAAAAGGATCGTGTCTTAACTCA
64069262 CTGGACATGATCCCTTTTTTAATCCAAGATAATTAAACATCT
66 CTGGACATGATCCCTTTTTTAATCCAAGATAATTAAACATCT
64069304 TTTAAACAAG
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 106 1.00
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (107 bp):
ACGAATCTTTTCAAACTTAAGTTTTAAACGATCTCGGGAATAAAAAAGGATCGTGTCTTAACTCA
CTGGACATGATCCCTTTTTTAATCCAAGATAATTAAACATCT
Found at i:64069684 original size:130 final size:130
Alignment explanation
Indices: 64069451--64069710 Score: 511
Period size: 130 Copynumber: 2.0 Consensus size: 130
64069441 TACAAGGATC
64069451 ACATTTTTAAAATTCTTTTAAATTCTCAATTTTCGACATTAAGACATTAAGTAATCAACTAGGTA
1 ACATTTTTAAAATTCTTTTAAATTCTCAATTTTCGACATTAAGACATTAAGTAATCAACTAGGTA
64069516 CCAATTTTGGACGTATCGAGGGTGCTAATCCTTCCTCGTGCGTAACCGACTCCCGAACCCGTTTT
66 CCAATTTTGGACGTATCGAGGGTGCTAATCCTTCCTCGTGCGTAACCGACTCCCGAACCCGTTTT
64069581 ACATTTTTAAAATTCTTTTAAATTCTCAATTTTCGACATTAAGACATTAAGTAATCAACTAGGTA
1 ACATTTTTAAAATTCTTTTAAATTCTCAATTTTCGACATTAAGACATTAAGTAATCAACTAGGTA
*
64069646 CCAATTTTGGGCGTATCGAGGGTGCTAATCCTTCCTCGTGCGTAACCGACTCCCGAACCCGTTTT
66 CCAATTTTGGACGTATCGAGGGTGCTAATCCTTCCTCGTGCGTAACCGACTCCCGAACCCGTTTT
64069711 CTAAATTTCG
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 129 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (130 bp):
ACATTTTTAAAATTCTTTTAAATTCTCAATTTTCGACATTAAGACATTAAGTAATCAACTAGGTA
CCAATTTTGGACGTATCGAGGGTGCTAATCCTTCCTCGTGCGTAACCGACTCCCGAACCCGTTTT
Found at i:64076436 original size:29 final size:28
Alignment explanation
Indices: 64076382--64076450 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 28
64076372 AATAGCCTAT
*
64076382 ATTTTTATAATTTTAAAGAATTAAATGAA
1 ATTTTTATTATTTTAAAGAATTAAAT-AA
* *
64076411 ATTTTTATTATTTTTAA-AATTAAAATAT
1 ATTTTTATTATTTTAAAGAATT-AAATAA
64076439 ATTTTTATTATT
1 ATTTTTATTATT
64076451 ACTAATTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 17 0.47
29 19 0.53
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (28 bp):
ATTTTTATTATTTTAAAGAATTAAATAA
Found at i:64076460 original size:27 final size:28
Alignment explanation
Indices: 64076411--64076463 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
64076401 ATTAAATGAA
**
64076411 ATTTTTATTATTTTTAAAATTAAAATAT
1 ATTTTTATTATTACTAAAATTAAAATAT
*
64076439 ATTTTTATTATTACT-AATTTAAAAT
1 ATTTTTATTATTACTAAAATTAAAAT
64076464 TTTATAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (28 bp):
ATTTTTATTATTACTAAAATTAAAATAT
Found at i:64084588 original size:20 final size:20
Alignment explanation
Indices: 64084563--64084608 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
64084553 ATTTAAAGAA
64084563 AATTTTTAATCAACTCAATC
1 AATTTTTAATCAACTCAATC
* *
64084583 AATTTTTTATCAATTCAATC
1 AATTTTTAATCAACTCAATC
64084603 AATTTT
1 AATTTT
64084609 GTATCGATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.48
Consensus pattern (20 bp):
AATTTTTAATCAACTCAATC
Found at i:64084613 original size:20 final size:20
Alignment explanation
Indices: 64084571--64084613 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
64084561 AAAATTTTTA
*
64084571 ATCAACTCAATCAATTTTTT
1 ATCAACTCAATCAATTTTGT
*
64084591 ATCAATTCAATCAATTTTGT
1 ATCAACTCAATCAATTTTGT
64084611 ATC
1 ATC
64084614 GATTAAATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (20 bp):
ATCAACTCAATCAATTTTGT
Found at i:64084622 original size:20 final size:20
Alignment explanation
Indices: 64084579--64084622 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
64084569 TAATCAACTC
* *
64084579 AATCAATTTTTTATCAATTC
1 AATCAATTTTGTATCAATTA
*
64084599 AATCAATTTTGTATCGATTA
1 AATCAATTTTGTATCAATTA
64084619 AATC
1 AATC
64084623 TTTTTTAGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.14, G:0.05, T:0.45
Consensus pattern (20 bp):
AATCAATTTTGTATCAATTA
Found at i:64090472 original size:17 final size:16
Alignment explanation
Indices: 64090450--64090493 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
64090440 TTCAAAATGC
64090450 AATTAATTAAAAATTTT
1 AATTAATTAAAAA-TTT
64090467 AATTAATT--AAATTT
1 AATTAATTAAAAATTT
*
64090481 ATTTAATTAAAAA
1 AATTAATTAAAAA
64090494 CTTATTCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 10 0.42
15 3 0.12
16 3 0.12
17 8 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AATTAATTAAAAATTT
Found at i:64091440 original size:23 final size:23
Alignment explanation
Indices: 64091390--64091434 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
64091380 GGCCAATCAC
*
64091390 TGTAATATCCCGAAAATTACTAA
1 TGTAATACCCCGAAAATTACTAA
64091413 TGTAATACCCCGAAAATTACTA
1 TGTAATACCCCGAAAATTACTA
64091435 CAGTAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAA
Done.