Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 19 of 284
Found at i:6387424 original size:28 final size:27
Alignment explanation
Indices: 6387381--6387495 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
6387371 TGGAGGAAGC
*
6387381 GTTCTGGTGGCCATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* *
6387408 GTTTCTGATGGCTATGCCACAAATATTT
1 G-TTCTGGTGGCTATGCCACAAATATCT
*
6387436 GTTCTGGTGGCTCTGCCAC-AATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * * *
6387462 ATATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTATGCCACAAATATCT
6387489 GTTCTGG
1 GTTCTGG
6387496 GAGCCGTGCT
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.16
27 40 0.53
28 24 0.32
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:6396678 original size:10 final size:10
Alignment explanation
Indices: 6396659--6396719 Score: 59
Period size: 10 Copynumber: 5.9 Consensus size: 10
6396649 ATTTTGGTAT
6396659 ACATGATATG
1 ACATGATATG
*
6396669 ACATGTTATG
1 ACATGATATG
6396679 ACATGATATG
1 ACATGATATG
*
6396689 CACTTGATATG
1 -ACATGATATG
** *
6396700 TTATGAGATG
1 ACATGATATG
6396710 CACATGATAT
1 -ACATGATAT
6396720 ACTCATTATA
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
10 24 0.62
11 15 0.38
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (10 bp):
ACATGATATG
Found at i:6396824 original size:24 final size:24
Alignment explanation
Indices: 6396767--6396838 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
6396757 AGGAAGTGTA
6396767 AAAAG-GGCTTTGCCCCAGTTAATC
1 AAAAGAGGCTTTGCCCCAGTT-ATC
*
6396791 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
6396815 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
6396839 ATAATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 17 0.41
25 24 0.59
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:6397375 original size:22 final size:23
Alignment explanation
Indices: 6397330--6397375 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
6397320 TGGGAATATT
*
6397330 TTTTTCTTCTTAATAACTCTAAA
1 TTTTTCTTCTTAATAACTCAAAA
* *
6397353 TTTTT-TTGTTAATAATTCAAAA
1 TTTTTCTTCTTAATAACTCAAAA
6397375 T
1 T
6397376 GGGCTAGACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.54
Consensus pattern (23 bp):
TTTTTCTTCTTAATAACTCAAAA
Found at i:6404665 original size:10 final size:10
Alignment explanation
Indices: 6404644--6404710 Score: 73
Period size: 10 Copynumber: 6.6 Consensus size: 10
6404634 CATGAGATTT
6404644 TGATAT-ACA
1 TGATATGACA
6404653 TGATATGACA
1 TGATATGACA
6404663 TGATATGACA
1 TGATATGACA
6404673 TGATATGCACA
1 TGATATG-ACA
* **
6404684 TGACATGTTA
1 TGATATGACA
*
6404694 TGAGATGCACA
1 TGATATG-ACA
6404705 TGATAT
1 TGATAT
6404711 ACCCATTATA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
9 6 0.12
10 27 0.56
11 15 0.31
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (10 bp):
TGATATGACA
Found at i:6404686 original size:21 final size:21
Alignment explanation
Indices: 6404644--6404710 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
6404634 CATGAGATTT
6404644 TGATAT-ACATGATATG-ACA
1 TGATATGACATGATATGCACA
6404663 TGATATGACATGATATGCACA
1 TGATATGACATGATATGCACA
* ** *
6404684 TGACATGTTATGAGATGCACA
1 TGATATGACATGATATGCACA
6404705 TGATAT
1 TGATAT
6404711 ACCCATTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
19 6 0.15
20 10 0.24
21 25 0.61
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (21 bp):
TGATATGACATGATATGCACA
Found at i:6404688 original size:16 final size:15
Alignment explanation
Indices: 6404644--6404710 Score: 64
Period size: 16 Copynumber: 4.4 Consensus size: 15
6404634 CATGAGATTT
*
6404644 TGATAT-ACATGATA
1 TGATATGACATGACA
* *
6404658 TGACATGATATGACA
1 TGATATGACATGACA
6404673 TGATATGCACATGACA
1 TGATATG-ACATGACA
* *
6404689 TGTTATGAGATGCACA
1 TGATATGACATG-ACA
6404705 TGATAT
1 TGATAT
6404711 ACCCATTATA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
14 5 0.12
15 16 0.38
16 21 0.50
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (15 bp):
TGATATGACATGACA
Found at i:6405329 original size:22 final size:23
Alignment explanation
Indices: 6405284--6405329 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
6405274 GGGAATATTT
* *
6405284 TTTTTCTTCTTAATAACTCTAAA
1 TTTTTCTTATTAATAACTCAAAA
*
6405307 TTTTTC-TATTAATAATTCAAAA
1 TTTTTCTTATTAATAACTCAAAA
6405329 T
1 T
6405330 GGGCTAGACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTTTCTTATTAATAACTCAAAA
Found at i:6409859 original size:39 final size:39
Alignment explanation
Indices: 6409815--6409989 Score: 296
Period size: 39 Copynumber: 4.5 Consensus size: 39
6409805 ATGCAAGACA
6409815 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
6409854 CTGGAAATGTATCTGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
6409893 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
6409932 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
6409971 CTGGAAATGTATCCAGGCT
1 CTGGAAATGTATCCGGGCT
6409990 TCATGCTGGA
Statistics
Matches: 125, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:6409996 original size:24 final size:24
Alignment explanation
Indices: 6409960--6410008 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
6409950 TAAAGTCCCG
*
6409960 CAGGCTTCGTGCTGGAAATGTATC
1 CAGGCTTCATGCTGGAAATGTATC
6409984 CAGGCTTCATGCTGGAAATGTATC
1 CAGGCTTCATGCTGGAAATGTATC
6410008 C
1 C
6410009 GAGCCAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (24 bp):
CAGGCTTCATGCTGGAAATGTATC
Found at i:6410020 original size:63 final size:63
Alignment explanation
Indices: 6409921--6410110 Score: 344
Period size: 63 Copynumber: 3.0 Consensus size: 63
6409911 CAAAGTCCCG
** * *
6409921 CAGGCTTTGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
1 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
6409984 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
1 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
6410047 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
1 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
6410110 C
1 C
6410111 GGGTTAAAGT
Statistics
Matches: 123, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 123 1.00
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (63 bp):
CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
Found at i:6410059 original size:24 final size:24
Alignment explanation
Indices: 6410023--6410071 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
6410013 CAAAGTCCCG
*
6410023 CAGGCTTCGTGCTGGAAATGTATC
1 CAGGCTTCATGCTGGAAATGTATC
6410047 CAGGCTTCATGCTGGAAATGTATC
1 CAGGCTTCATGCTGGAAATGTATC
6410071 C
1 C
6410072 GAGCCAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (24 bp):
CAGGCTTCATGCTGGAAATGTATC
Found at i:6410090 original size:102 final size:102
Alignment explanation
Indices: 6409843--6410138 Score: 314
Period size: 102 Copynumber: 2.9 Consensus size: 102
6409833 TAAAGTCCCG
* * * * * *
6409843 CAGGCTTCGTGCTGGAAATGTATCTGGGCTAAAGTCCCGTAGGCTTCGTGCTGGAAATATATCCG
1 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCG
6409908 GGCCAAAGTCCCGCAGGCTTTGTGCTGGAAATGTATC
66 GGCCAAAGTCCCGCAGGCTTTGTGCTGGAAATGTATC
* * * ** * * * * ** *
6409945 CGGGC-TAAAGTCCCG-CAGGCT-T-CGTGCTGGAAATGTATC-CAGGCTTCATGCTGGAAATGT
1 CAGGCTTCATG-CTGGAAATG-TATCCGAGC--CAAA-GTCCCGCAGGCTTCGTGCTGGAAATGT
* *
6410005 ATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
61 ATCCGGGCCAAAGTCCCGCAGGCTTTGTGCTGGAAATGTATC
6410047 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCG
1 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCG
**
6410112 GGTTAAAGTCCCGCAGGCTTTGTGCTG
66 GGCCAAAGTCCCGCAGGCTTTGTGCTG
6410139 ATAATATAAT
Statistics
Matches: 150, Mismatches: 34, Indels: 20
0.74 0.17 0.10
Matches are distributed among these distances:
100 3 0.02
101 8 0.05
102 126 0.84
103 9 0.06
104 4 0.03
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (102 bp):
CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCG
GGCCAAAGTCCCGCAGGCTTTGTGCTGGAAATGTATC
Found at i:6410101 original size:39 final size:39
Alignment explanation
Indices: 6410047--6410138 Score: 139
Period size: 39 Copynumber: 2.4 Consensus size: 39
6410037 GAAATGTATC
*
6410047 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCG
1 CAGGCTTCGTGCTGGAAATGTATCCGAGCCAAAGTCCCG
* **
6410086 CAGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCCG
1 CAGGCTTCGTGCTGGAAATGTATCCGAGCCAAAGTCCCG
*
6410125 CAGGCTTTGTGCTG
1 CAGGCTTCGTGCTG
6410139 ATAATATAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (39 bp):
CAGGCTTCGTGCTGGAAATGTATCCGAGCCAAAGTCCCG
Found at i:6417926 original size:27 final size:27
Alignment explanation
Indices: 6417891--6417946 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
6417881 TAATCCATCT
6417891 TTAAAAATTATAAAAAAC-TATAAAAA
1 TTAAAAATTATAAAAAACTTATAAAAA
* *
6417917 TTAAATAATTATATAAAACTTATTAAAA
1 TTAAA-AATTATAAAAAACTTATAAAAA
6417945 TT
1 TT
6417947 TTAAAAGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 5 0.19
27 12 0.46
28 9 0.35
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (27 bp):
TTAAAAATTATAAAAAACTTATAAAAA
Found at i:6417999 original size:16 final size:17
Alignment explanation
Indices: 6417968--6418014 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
6417958 AGCATTTAAT
*
6417968 AATTTCTATAAATTTTC-
1 AATTTTTAT-AATTTTCA
*
6417985 TATTTTTATAATTTTCAA
1 AATTTTTATAATTTTC-A
6418003 AATTTTTATAAT
1 AATTTTTATAAT
6418015 AAATTTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 7 0.28
17 7 0.28
18 11 0.44
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTTTTATAATTTTCA
Found at i:6418333 original size:10 final size:10
Alignment explanation
Indices: 6418310--6418403 Score: 52
Period size: 10 Copynumber: 9.3 Consensus size: 10
6418300 AATAACTAAA
*
6418310 TTTTATATATT
1 TTTTA-ATAAT
6418321 TTTTAATAAT
1 TTTTAATAAT
6418331 TTTT-ATAAAT
1 TTTTAAT-AAT
*
6418341 TTTT-CTAAT
1 TTTTAATAAT
* *
6418350 TTATTTATCA-
1 TT-TTAATAAT
6418360 TTTTAATAAT
1 TTTTAATAAT
6418370 TTTTATATAACT
1 TTTTA-ATAA-T
* *
6418382 TTCT-ATAAA
1 TTTTAATAAT
*
6418391 TTTTAATACT
1 TTTTAATAAT
6418401 TTT
1 TTT
6418404 ATTTTTCAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 15
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.23
10 35 0.54
11 11 0.17
12 4 0.06
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:6418342 original size:30 final size:30
Alignment explanation
Indices: 6418306--6418378 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
6418296 TCAAAATAAC
*
6418306 TAAATTTTATATATTT-TTTAATAATTTTTA
1 TAAATTTTATATATTTATTT-ATAATTTTAA
* *
6418336 TAAATTTT-TCTAATTTATTTATCATTTTAA
1 TAAATTTTATAT-ATTTATTTATAATTTTAA
*
6418366 TAATTTTTATATA
1 TAAATTTTATATA
6418379 ACTTTCTATA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
29 2 0.06
30 28 0.80
31 5 0.14
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (30 bp):
TAAATTTTATATATTTATTTATAATTTTAA
Found at i:6418572 original size:9 final size:9
Alignment explanation
Indices: 6418560--6418622 Score: 56
Period size: 9 Copynumber: 6.9 Consensus size: 9
6418550 TATTGAAATT
*
6418560 ATTTTAATA
1 ATTTTTATA
6418569 ATTTTTATA
1 ATTTTTATA
*
6418578 GTTTTTCTATA
1 -ATTTT-TATA
*
6418589 ACTTTTATA
1 ATTTTTATA
*
6418598 ATTTTCA-A
1 ATTTTTATA
6418606 ATTTTTATA
1 ATTTTTATA
*
6418615 ATATTTAT
1 ATTTTTAT
6418623 TTATAATAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
8 7 0.16
9 25 0.58
10 7 0.16
11 4 0.09
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (9 bp):
ATTTTTATA
Found at i:6418589 original size:20 final size:18
Alignment explanation
Indices: 6418560--6418616 Score: 62
Period size: 17 Copynumber: 3.1 Consensus size: 18
6418550 TATTGAAATT
*
6418560 ATTTTAATAATTTTTATA
1 ATTTTCATAATTTTTATA
* *
6418578 GTTTTTCTATAACTTTTATA
1 -ATTTTC-ATAATTTTTATA
6418598 ATTTTCA-AATTTTTATA
1 ATTTTCATAATTTTTATA
6418615 AT
1 AT
6418617 ATTTATTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
17 11 0.34
18 1 0.03
19 9 0.28
20 11 0.34
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (18 bp):
ATTTTCATAATTTTTATA
Found at i:6420701 original size:43 final size:43
Alignment explanation
Indices: 6420619--6420701 Score: 96
Period size: 43 Copynumber: 1.9 Consensus size: 43
6420609 TGTAGGACAA
* * * **
6420619 TGTCTGGGACATTGGCATCGTTAATCGATTTCATATAAGACCC
1 TGTCTGGGACAATGCCATCGATAATCGATAACATATAAGACCC
*
6420662 TGTCTGGGACAATGCCATCGAT-ATACGATAACATGTAAGA
1 TGTCTGGGACAATGCCATCGATAAT-CGATAACATATAAGA
6420702 TCATATTTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
42 2 0.06
43 31 0.94
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (43 bp):
TGTCTGGGACAATGCCATCGATAATCGATAACATATAAGACCC
Found at i:6424192 original size:38 final size:38
Alignment explanation
Indices: 6424141--6424248 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
6424131 GTAATCGGGT
6424141 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCTGGA
1 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCTGGA
*
6424179 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCTGGT
1 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCTGGA
* * *
6424217 TAAATCCCGCAGGCCTAGTGTTGGTATTATAT
1 TAAATCCCGCAGGCTTCGTGCTGGTATTATAT
6424249 TCGGGCCTTC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 66 1.00
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.33
Consensus pattern (38 bp):
TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCTGGA
Found at i:6424294 original size:43 final size:43
Alignment explanation
Indices: 6424246--6424413 Score: 264
Period size: 43 Copynumber: 3.9 Consensus size: 43
6424236 GTTGGTATTA
*
6424246 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
6424289 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * *
6424332 TATTCGGGCCTTCGTGCCCAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
6424375 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
6424414 AATGATATGT
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 116 1.00
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:6427379 original size:43 final size:43
Alignment explanation
Indices: 6427318--6427451 Score: 223
Period size: 43 Copynumber: 3.1 Consensus size: 43
6427308 TGGGCTATTA
6427318 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
* * *
6427361 CAGGCTTCGTACCGGTGATGTGTATTTGGGCCTTCGTGCCTAT
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
* *
6427404 CAGGCTTCATGCCGATGATGTGTATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
6427447 CAGGC
1 CAGGC
6427452 GTAATGCCGG
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 83 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
Found at i:6427848 original size:45 final size:42
Alignment explanation
Indices: 6427781--6427888 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
6427771 TTGACTTGAT
* *
6427781 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
6427826 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
6427868 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
6427889 ACAGGCGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:6446257 original size:27 final size:27
Alignment explanation
Indices: 6446205--6446294 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
6446195 CCTTATGTGA
*
6446205 TAAAATGACCAAAATA-CCCTATTAGGC
1 TAAAATGACCAAAATACCCCTA-TAGGG
*
6446232 TAAAAAGACCAAAATACCCCTATAGGG
1 TAAAATGACCAAAATACCCCTATAGGG
* * * *
6446259 TAGAATGACCGAAATGCCCCTGTAGGG
1 TAAAATGACCAAAATACCCCTATAGGG
6446286 TAAAATGAC
1 TAAAATGAC
6446295 TGTAATACCT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
27 49 0.91
28 5 0.09
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
TAAAATGACCAAAATACCCCTATAGGG
Found at i:6446399 original size:23 final size:23
Alignment explanation
Indices: 6446356--6446405 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
6446346 CTGTATTTGA
6446356 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
6446379 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
6446402 GCAT
1 GCAT
6446406 TGCATGAGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:6465020 original size:36 final size:36
Alignment explanation
Indices: 6464979--6465085 Score: 196
Period size: 36 Copynumber: 3.0 Consensus size: 36
6464969 AATTGGTCAT
6464979 GGAAGGATTGTAGGAGGGAGTTAAGGAGATATGTGA
1 GGAAGGATTGTAGGAGGGAGTTAAGGAGATATGTGA
*
6465015 GGAAGGATTGCAGGAGGGAGTTAAGGAGATATGTGA
1 GGAAGGATTGTAGGAGGGAGTTAAGGAGATATGTGA
*
6465051 GGAAGGATTGTAGGAGGGAGTTAAGGGGATATGTG
1 GGAAGGATTGTAGGAGGGAGTTAAGGAGATATGTG
6465086 GGCCTACATA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 68 1.00
ACGTcount: A:0.32, C:0.01, G:0.46, T:0.21
Consensus pattern (36 bp):
GGAAGGATTGTAGGAGGGAGTTAAGGAGATATGTGA
Found at i:6479604 original size:56 final size:56
Alignment explanation
Indices: 6479537--6479768 Score: 428
Period size: 56 Copynumber: 4.1 Consensus size: 56
6479527 TATTAGTTTA
* *
6479537 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
6479593 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
6479649 TTGTCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
6479705 TTGTCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
6479761 TTGCCCAT
1 TTGCCCAT
6479769 CATCCCTTGT
Statistics
Matches: 172, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 172 1.00
ACGTcount: A:0.23, C:0.21, G:0.09, T:0.47
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:6480254 original size:21 final size:21
Alignment explanation
Indices: 6480228--6480269 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
6480218 TTAATGTATG
*
6480228 ATTACCAGTGGATTATTTTGA
1 ATTACCAGTGCATTATTTTGA
*
6480249 ATTACCTGTGCATTATTTTGA
1 ATTACCAGTGCATTATTTTGA
6480270 GATATTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.45
Consensus pattern (21 bp):
ATTACCAGTGCATTATTTTGA
Found at i:6488014 original size:269 final size:269
Alignment explanation
Indices: 6487535--6488072 Score: 1076
Period size: 269 Copynumber: 2.0 Consensus size: 269
6487525 TAGTACGCAT
6487535 CCTAACCCCACATGCGACGCATCGCTGTACACAGTGAAGTCCTTCCCAGACTCTTGTTGAATCAA
1 CCTAACCCCACATGCGACGCATCGCTGTACACAGTGAAGTCCTTCCCAGACTCTTGTTGAATCAA
6487600 CACTGGCACCCCAGTCAATACCTTTTTCAACTGGTCAAAAGCTTTCTACTATTTTTCAGTCCAGA
66 CACTGGCACCCCAGTCAATACCTTTTTCAACTGGTCAAAAGCTTTCTACTATTTTTCAGTCCAGA
6487665 CAAATGCTACTCCTTTCCTTCACAGTTTTGTCAATGGTGCAGCAATCAGAGAAAATCCCTCTACA
131 CAAATGCTACTCCTTTCCTTCACAGTTTTGTCAATGGTGCAGCAATCAGAGAAAATCCCTCTACA
6487730 AACCTTCTGTAATAGCCTGCCAGACCCAGAAAACTCTGAATTTTCAATACTGACTTCGGTGGTTT
196 AACCTTCTGTAATAGCCTGCCAGACCCAGAAAACTCTGAATTTTCAATACTGACTTCGGTGGTTT
6487795 CCATTCCCA
261 CCATTCCCA
6487804 CCTAACCCCACATGCGACGCATCGCTGTACACAGTGAAGTCCTTCCCAGACTCTTGTTGAATCAA
1 CCTAACCCCACATGCGACGCATCGCTGTACACAGTGAAGTCCTTCCCAGACTCTTGTTGAATCAA
6487869 CACTGGCACCCCAGTCAATACCTTTTTCAACTGGTCAAAAGCTTTCTACTATTTTTCAGTCCAGA
66 CACTGGCACCCCAGTCAATACCTTTTTCAACTGGTCAAAAGCTTTCTACTATTTTTCAGTCCAGA
6487934 CAAATGCTACTCCTTTCCTTCACAGTTTTGTCAATGGTGCAGCAATCAGAGAAAATCCCTCTACA
131 CAAATGCTACTCCTTTCCTTCACAGTTTTGTCAATGGTGCAGCAATCAGAGAAAATCCCTCTACA
6487999 AACCTTCTGTAATAGCCTGCCAGACCCAGAAAACTCTGAATTTTCAATACTGACTTCGGTGGTTT
196 AACCTTCTGTAATAGCCTGCCAGACCCAGAAAACTCTGAATTTTCAATACTGACTTCGGTGGTTT
6488064 CCATTCCCA
261 CCATTCCCA
6488073 AACTGCCTCA
Statistics
Matches: 269, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
269 269 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (269 bp):
CCTAACCCCACATGCGACGCATCGCTGTACACAGTGAAGTCCTTCCCAGACTCTTGTTGAATCAA
CACTGGCACCCCAGTCAATACCTTTTTCAACTGGTCAAAAGCTTTCTACTATTTTTCAGTCCAGA
CAAATGCTACTCCTTTCCTTCACAGTTTTGTCAATGGTGCAGCAATCAGAGAAAATCCCTCTACA
AACCTTCTGTAATAGCCTGCCAGACCCAGAAAACTCTGAATTTTCAATACTGACTTCGGTGGTTT
CCATTCCCA
Found at i:6492393 original size:48 final size:48
Alignment explanation
Indices: 6492337--6492564 Score: 225
Period size: 48 Copynumber: 4.9 Consensus size: 48
6492327 CATATGGTAG
** *
6492337 GATGCCAATGCCATATCCTGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * * ** **
6492385 GATGCCAATGCCATACCCCAAACATAGTCTTACATGGGATCGTAGGTC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* *
6492433 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATTTC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* ** * *
6492481 GATGCC---G--ATAGCCCAG-CTATGGTCTTACATGAAATTACATATT
1 GATGCCAATGCCATATCCCAGAC-ATGGTCTTACATGGGATCACATATC
* * *
6492524 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATAGGATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
6492565 GTACATAACC
Statistics
Matches: 142, Mismatches: 31, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
42 1 0.01
43 33 0.23
45 1 0.01
46 1 0.01
48 105 0.74
49 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:6493475 original size:23 final size:23
Alignment explanation
Indices: 6493445--6493491 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
6493435 ATTAACCAAA
*
6493445 TGACAAAAATACCCTTAGGGCCT
1 TGACAAAAATACCCTTAGAGCCT
*
6493468 TGACAAAAATTCCCTTAGAGCCT
1 TGACAAAAATACCCTTAGAGCCT
6493491 T
1 T
6493492 TCTTTCTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (23 bp):
TGACAAAAATACCCTTAGAGCCT
Found at i:6502727 original size:29 final size:28
Alignment explanation
Indices: 6502691--6502768 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
6502681 TCATGAGATT
6502691 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
6502721 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
6502748 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
6502769 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:6502986 original size:174 final size:174
Alignment explanation
Indices: 6502721--6510356 Score: 15092
Period size: 174 Copynumber: 43.9 Consensus size: 174
6502711 AAATTGTACA
*
6502721 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6502786 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6502851 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6502895 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
6502960 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6503025 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6503069 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6503134 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6503199 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6503243 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6503308 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6503373 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6503417 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6503482 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6503547 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6503591 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6503656 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6503721 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6503765 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6503830 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6503895 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6503939 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6504004 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6504069 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6504113 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6504178 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6504243 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6504287 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6504352 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6504417 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6504461 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6504526 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6504591 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6504635 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6504700 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6504765 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6504809 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6504874 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6504939 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6504983 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6505048 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6505113 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6505157 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6505222 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6505287 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6505331 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6505396 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6505461 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6505505 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6505570 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6505635 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6505679 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6505744 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6505809 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6505853 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6505918 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6505983 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6506027 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6506092 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6506157 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6506201 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6506266 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6506331 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6506375 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6506440 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6506505 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6506549 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6506614 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6506679 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6506723 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6506788 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6506853 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6506897 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6506962 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6507027 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6507071 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6507136 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6507201 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6507245 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6507310 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6507375 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6507419 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6507484 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6507549 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6507593 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6507658 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6507723 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6507767 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6507832 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6507897 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6507941 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6508006 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6508071 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6508115 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6508180 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6508245 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6508289 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6508354 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6508419 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6508463 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6508528 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6508593 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6508637 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6508702 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6508767 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6508811 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6508876 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6508941 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6508985 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6509050 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6509115 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6509159 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6509224 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6509289 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6509333 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6509398 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6509463 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6509507 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6509572 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6509637 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6509681 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6509746 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6509811 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6509855 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6509920 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6509985 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
6510029 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
6510094 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6510159 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
6510203 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
6510268 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
6510333 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
6510357 ACCTTGAGTT
Statistics
Matches: 7430, Mismatches: 32, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
174 7430 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:6513368 original size:17 final size:17
Alignment explanation
Indices: 6513336--6513373 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
6513326 AAACTGATGC
6513336 ATAAAACTGTTAATACAG
1 ATAAAACTGTTAATAC-G
*
6513354 ATAAAAGTG-TAATACG
1 ATAAAACTGTTAATACG
6513370 ATAA
1 ATAA
6513374 TGAGCACTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 6 0.32
18 8 0.42
ACGTcount: A:0.53, C:0.08, G:0.13, T:0.26
Consensus pattern (17 bp):
ATAAAACTGTTAATACG
Found at i:6518998 original size:203 final size:203
Alignment explanation
Indices: 6518649--6519055 Score: 805
Period size: 203 Copynumber: 2.0 Consensus size: 203
6518639 ATGACAGCTC
6518649 CCATTTTCCATTTATTCACATTTTACCACACATTTTACAACCTTTTACAAATAGGTACCTTTTGA
1 CCATTTTCCATTTATTCACATTTTACCACACATTTTACAACCTTTTACAAATAGGTACCTTTTGA
6518714 CATTTTCATCAAAAATCACTTTGTAAATGTTGTTTAACTAACAACAAACATGCATTTTCTACCAT
66 CATTTTCATCAAAAATCACTTTGTAAATGTTGTTTAACTAACAACAAACATGCATTTTCTACCAT
*
6518779 TAAACATCAAAATAAAAGCTTATTCAAGATGGGTAAAATTTTAGACTTTGATTTTCTTTCAAATT
131 TAAACATCAAAATAAAAGCTTATTCAAGATGGGTAAAATTTTAGACTTGGATTTTCTTTCAAATT
6518844 ATTTCTTA
196 ATTTCTTA
6518852 CCATTTTCCATTTATTCACATTTTACCACACATTTTACAACCTTTTACAAATAGGTACCTTTTGA
1 CCATTTTCCATTTATTCACATTTTACCACACATTTTACAACCTTTTACAAATAGGTACCTTTTGA
6518917 CATTTTCATCAAAAATCACTTTGTAAATGTTGTTTAACTAACAACAAACATGCATTTTCTACCAT
66 CATTTTCATCAAAAATCACTTTGTAAATGTTGTTTAACTAACAACAAACATGCATTTTCTACCAT
6518982 TAAACATCAAAATAAAAGCTTATTCAAGATGGGTAAAATTTTAGACTTGGATTTTCTTTCAAATT
131 TAAACATCAAAATAAAAGCTTATTCAAGATGGGTAAAATTTTAGACTTGGATTTTCTTTCAAATT
6519047 ATTTCTTA
196 ATTTCTTA
6519055 C
1 C
6519056 AATAGCTAGA
Statistics
Matches: 203, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
203 203 1.00
ACGTcount: A:0.35, C:0.18, G:0.07, T:0.40
Consensus pattern (203 bp):
CCATTTTCCATTTATTCACATTTTACCACACATTTTACAACCTTTTACAAATAGGTACCTTTTGA
CATTTTCATCAAAAATCACTTTGTAAATGTTGTTTAACTAACAACAAACATGCATTTTCTACCAT
TAAACATCAAAATAAAAGCTTATTCAAGATGGGTAAAATTTTAGACTTGGATTTTCTTTCAAATT
ATTTCTTA
Found at i:6532524 original size:48 final size:48
Alignment explanation
Indices: 6532196--6532513 Score: 483
Period size: 48 Copynumber: 6.6 Consensus size: 48
6532186 ATAAGGTCCC
*
6532196 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
*
6532244 GTGCAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * *
6532292 GTGTAAGGCCATGTCAGGGACATGACATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* *
6532340 GTGTAAGACCATGTCTGGGACATGGCAACAGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* *
6532388 GTGTAAGACCATGTCTAGGACATGACATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
*** * *
6532436 GTGTAAGACCATGTCTAAAACATGGCATCGTCGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * *
6532484 GTATAAGACCATGTTTGGGACATGGTATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
6532514 ACACTAATAT
Statistics
Matches: 244, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 244 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
Found at i:6535699 original size:47 final size:47
Alignment explanation
Indices: 6535646--6535771 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 47
6535636 GAATAATACA
* * * *
6535646 TTGATTTGGTTACGGGCCATGCTATAGGTATTCAGAGAGGAGTTACT
1 TTGATTTGGTTACGGGCCATGGTATAGGTACTCAGAGAGAAGTTACC
* * * *
6535693 TTGATTTGGATACGGGCCATGGTATAGGTACTCCGGGATAAGTTACC
1 TTGATTTGGTTACGGGCCATGGTATAGGTACTCAGAGAGAAGTTACC
* *
6535740 TTGATTTGGTTACGAGCCGTGGTATAGGTACT
1 TTGATTTGGTTACGGGCCATGGTATAGGTACT
6535772 TATCAATTGT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.33
Consensus pattern (47 bp):
TTGATTTGGTTACGGGCCATGGTATAGGTACTCAGAGAGAAGTTACC
Found at i:6537105 original size:13 final size:13
Alignment explanation
Indices: 6537087--6537121 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
6537077 AATGTCACAC
6537087 GGCCGTGTGAACA
1 GGCCGTGTGAACA
6537100 GGCCGTGTGAACA
1 GGCCGTGTGAACA
6537113 GGCCGTGTG
1 GGCCGTGTG
6537122 CCTCACACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.17, C:0.23, G:0.43, T:0.17
Consensus pattern (13 bp):
GGCCGTGTGAACA
Found at i:6538318 original size:43 final size:41
Alignment explanation
Indices: 6538216--6538395 Score: 141
Period size: 43 Copynumber: 4.2 Consensus size: 41
6538206 CAACGCCAAA
* *
6538216 GTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCAGG
1 GTCCTAGAC-AGGTCTTACATGTAATCAAATATCGATGCCA-T
*
6538259 GTCGC-AGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTC-CTAGAC-AGGTCTTACATGTAATCAAATATCGATGCCA-T
* * * * *
6538302 GTCCTAGACAGAGTCTTTCGTGAAATCAAATA-CGATACTGAT
1 GTCCTAGACAG-GTCTTACATGTAATCAAATATCGATGC-CAT
* * *
6538344 GTCCCAGACATGGTCTTACATGTAAATCTAGA-ATCGACGCCAAT
1 GTCCTAGACA-GGTCTTACATGT-AATC-AAATATCGATGCC-AT
6538388 GTCCTAGA
1 GTCCTAGA
6538396 TGTGGTCTTA
Statistics
Matches: 111, Mismatches: 17, Indels: 17
0.77 0.12 0.12
Matches are distributed among these distances:
42 25 0.23
43 70 0.63
44 16 0.14
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (41 bp):
GTCCTAGACAGGTCTTACATGTAATCAAATATCGATGCCAT
Found at i:6538404 original size:86 final size:86
Alignment explanation
Indices: 6538208--6538421 Score: 211
Period size: 86 Copynumber: 2.5 Consensus size: 86
6538198 AGCTTGTACA
* * * * * *
6538208 ACGCCAAAGTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCAGGGTCGCAGACGTGGT
1 ACGCCAATGTCCTAGAAGTGGTCTTACATGAAATCAAATATCGATACCAGGGTCCCAGACATGGT
6538273 CTTACATGTAATCAAATATCG
66 CTTACATGTAATCAAATATCG
* * * * * * *
6538294 ATGCCACTGTCCTAGACAG-AGTCTTTCGTGAAATCAAATA-CGATA-CTGATGTCCCAGACATG
1 ACGCCAATGTCCTAGA-AGTGGTCTTACATGAAATCAAATATCGATACCAG-GGTCCCAGACATG
*
6538356 GTCTTACATGTAAATCTAGA-ATCG
64 GTCTTACATGT-AATC-AAATATCG
* * *
6538380 ACGCCAATGTCCTAGATGTGGTCTTACACGAAATCACATATC
1 ACGCCAATGTCCTAGAAGTGGTCTTACATGAAATCAAATATC
6538422 AGAATCCTAT
Statistics
Matches: 100, Mismatches: 22, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
84 2 0.02
85 26 0.26
86 68 0.68
87 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (86 bp):
ACGCCAATGTCCTAGAAGTGGTCTTACATGAAATCAAATATCGATACCAGGGTCCCAGACATGGT
CTTACATGTAATCAAATATCG
Found at i:6542046 original size:17 final size:18
Alignment explanation
Indices: 6542024--6542057 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6542014 CACATTGAAG
6542024 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
6542041 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
6542058 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:6543276 original size:57 final size:56
Alignment explanation
Indices: 6543166--6543276 Score: 125
Period size: 57 Copynumber: 2.0 Consensus size: 56
6543156 TGCCTATATA
* * ** * *
6543166 TGACCCACTAGGCCCAATCTCGTTCATATGGCCTGTCAGACCCATTCATATTTATG
1 TGACCCACTAGGCCCAATCACATTCATATGGCCACTCAGACCCAATCACATTTATG
* *
6543222 TGACCCATTAGGCCCAAATCACATTCATATGGCCACT-AGGCCCAAATCACATTTA
1 TGACCCACTAGGCCC-AATCACATTCATATGGCCACTCAGACCC-AATCACATTTA
6543277 CAGTCATGCT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
56 19 0.42
57 26 0.58
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (56 bp):
TGACCCACTAGGCCCAATCACATTCATATGGCCACTCAGACCCAATCACATTTATG
Found at i:6543532 original size:16 final size:16
Alignment explanation
Indices: 6543496--6543532 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
6543486 AAAATTTCAA
6543496 CTTTTCGGCATTTTAG
1 CTTTTCGGCATTTTAG
* *
6543512 ATTTTCGGCATTTTGG
1 CTTTTCGGCATTTTAG
6543528 CTTTT
1 CTTTT
6543533 GCTGATCTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.16, G:0.19, T:0.54
Consensus pattern (16 bp):
CTTTTCGGCATTTTAG
Found at i:6548249 original size:18 final size:20
Alignment explanation
Indices: 6548214--6548261 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 20
6548204 CCTGCCCACG
6548214 ACCCCTTGGCTGCAGCTGACC
1 ACCCCTTGGCTG-AGCTGACC
*
6548235 ACCCCTTGG-TG-GCTGAGC
1 ACCCCTTGGCTGAGCTGACC
6548253 ACCACCTTG
1 ACC-CCTTG
6548262 ACCCACTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 9 0.36
19 5 0.20
20 2 0.08
21 9 0.36
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.21
Consensus pattern (20 bp):
ACCCCTTGGCTGAGCTGACC
Found at i:6550931 original size:29 final size:28
Alignment explanation
Indices: 6550898--6550961 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
6550888 AGGCCTATTT
*
6550898 ACATTTATGTCGCCCA-TAAGGCCCAAATC
1 ACATTTATAT-GCCCACT-AGGCCCAAATC
* *
6550927 ACATTCATATGGCCACTAGGCCCAAATC
1 ACATTTATATGCCCACTAGGCCCAAATC
6550955 ACATTTA
1 ACATTTA
6550962 CAGTCGTGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 21 0.70
29 9 0.30
ACGTcount: A:0.33, C:0.30, G:0.12, T:0.25
Consensus pattern (28 bp):
ACATTTATATGCCCACTAGGCCCAAATC
Found at i:6551054 original size:18 final size:19
Alignment explanation
Indices: 6551031--6551068 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
6551021 ATGGGCACGA
6551031 TAGCCCA-TCGGGCCCATT
1 TAGCCCACTCGGGCCCATT
*
6551049 TAGCCCACTCTGGCCCATT
1 TAGCCCACTCGGGCCCATT
6551068 T
1 T
6551069 GGCCAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.16, C:0.39, G:0.18, T:0.26
Consensus pattern (19 bp):
TAGCCCACTCGGGCCCATT
Found at i:6554286 original size:15 final size:15
Alignment explanation
Indices: 6554260--6554315 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
6554250 CAAGGAAACT
6554260 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
6554275 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
*
6554290 GAATAAAGGAATCCA
1 GAATAAAGAAATCCA
6554305 GAATAAAGAAA
1 GAATAAAGAAA
6554316 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
14 1 0.03
15 33 0.94
16 1 0.03
ACGTcount: A:0.59, C:0.11, G:0.18, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:6557907 original size:66 final size:66
Alignment explanation
Indices: 6557804--6557940 Score: 258
Period size: 66 Copynumber: 2.1 Consensus size: 66
6557794 AAAAATTACA
6557804 ATTTTGCCCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTTCAGCC
1 ATTTTGCCCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTTCAGCC
6557869 T
66 T
6557870 AGTTTTGCCCCTAAACTTTT-CATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTTCAGC
1 A-TTTTGCCCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTTCAGC
6557934 CT
65 CT
6557936 ATTTT
1 ATTTT
6557941 CTTATGTTTT
Statistics
Matches: 70, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
65 4 0.06
66 48 0.69
67 18 0.26
ACGTcount: A:0.27, C:0.26, G:0.09, T:0.38
Consensus pattern (66 bp):
ATTTTGCCCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTTCAGCC
T
Found at i:6561196 original size:50 final size:49
Alignment explanation
Indices: 6561088--6561217 Score: 188
Period size: 50 Copynumber: 2.6 Consensus size: 49
6561078 CTGGTATGCA
* * * **
6561088 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
*
6561137 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
*
6561187 TAGTAGCCTGCACTTAGTAATACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
6561218 TCAAAGTTAT
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
49 30 0.41
50 43 0.59
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:6561271 original size:101 final size:99
Alignment explanation
Indices: 6561088--6561271 Score: 233
Period size: 101 Copynumber: 1.8 Consensus size: 99
6561078 CTGGTATGCA
* * * * * *
6561088 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTAATACACACGCGACAAATTATCCGATACACATAGTAGCCTACACTTA
*
6561153 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * * *
6561187 TAGTAGCCTGCACTTAGTAATACACACGTGATCAAAGTTATCGGGTACGCATAGTAGCCTATACT
1 TAGTAGCCTGCACTTAGTAATACACACGCGA-CAAA-TTATCCGATACACATAGTAGCCTACACT
*
6561252 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
6561272 CACAATAGAT
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
99 27 0.39
100 3 0.04
101 40 0.57
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTAATACACACGCGACAAATTATCCGATACACATAGTAGCCTACACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:6562281 original size:13 final size:13
Alignment explanation
Indices: 6562260--6562330 Score: 79
Period size: 13 Copynumber: 5.5 Consensus size: 13
6562250 AAATTTTTTC
6562260 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
6562273 AAAGTACTTCTCA
1 AAAGCACTTCTCA
* * *
6562286 AAAGCAATTTTCC
1 AAAGCACTTCTCA
* *
6562299 ACAGCACTTTTCA
1 AAAGCACTTCTCA
*
6562312 AAAGCACTTTTCA
1 AAAGCACTTCTCA
6562325 AAAGCA
1 AAAGCA
6562331 ATGAAGAACT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.27
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:6562290 original size:26 final size:26
Alignment explanation
Indices: 6562260--6562330 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
6562250 AAATTTTTTC
* *
6562260 AAAGCACTTCTCAAAAGTACTTCTCA
1 AAAGCACTTTTCAAAAGCACTTCTCA
* * * *
6562286 AAAGCAATTTTCCACAGCACTTTTCA
1 AAAGCACTTTTCAAAAGCACTTCTCA
6562312 AAAGCACTTTTCAAAAGCA
1 AAAGCACTTTTCAAAAGCA
6562331 ATGAAGAACT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.27
Consensus pattern (26 bp):
AAAGCACTTTTCAAAAGCACTTCTCA
Found at i:6570255 original size:64 final size:64
Alignment explanation
Indices: 6570174--6570357 Score: 212
Period size: 67 Copynumber: 2.8 Consensus size: 64
6570164 AGACATTATG
* * *
6570174 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
6570238 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
6570303 AA
63 AA
* *
6570305 AT-TAGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
6570358 CGAACTATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 22 0.22
67 33 0.33
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:6570839 original size:68 final size:68
Alignment explanation
Indices: 6570767--6570914 Score: 160
Period size: 64 Copynumber: 2.2 Consensus size: 68
6570757 CATCATGTGT
* * * *
6570767 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
6570830 TGTAG
64 TGTAG
* ** * *
6570835 ACAAGAGAGCT--ATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
6570898 GTAG
65 GTAG
6570902 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
6570915 GAGATAAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 24 0.36
65 3 0.05
66 5 0.08
67 23 0.35
68 11 0.17
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG
TAG
Found at i:6570871 original size:64 final size:64
Alignment explanation
Indices: 6570791--6570974 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
6570781 AGACATTATG
* * * *
6570791 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
6570855 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
6570920 AA
63 AA
* * *
6570922 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
6570975 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 21 0.21
67 32 0.33
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:6570984 original size:617 final size:617
Alignment explanation
Indices: 6569811--6571044 Score: 2387
Period size: 617 Copynumber: 2.0 Consensus size: 617
6569801 AAGTCTATGG
6569811 TACATGAAGAGCATTGAATTATCATACATAAATGTGATTCTATGATTAGGGATATTATGGGAAAT
1 TACATGAAGAGCATTGAATTATCATACATAAATGTGATTCTATGATTAGGGATATTATGGGAAAT
*
6569876 TGTAAGTTCATATGATTTTTAATAAGGCAATGTGTAATTTAATGTTATTGCCTTGATATTAAATG
66 TGTAAGTTCATATGATTTTTAATAAGGCAATGCGTAATTTAATGTTATTGCCTTGATATTAAATG
6569941 AGATGTAAGTTTATATGTAAGTAATACATCAATATTACTTGTATTATGATATTTTATAATAATAT
131 AGATGTAAGTTTATATGTAAGTAATACATCAATATTACTTGTATTATGATATTTTATAATAATAT
*
6570006 TGGAAATATGTTTGTGGATAATTACTTGATTGGTGAAATTGTTGGAAAAGAGAGAGAAATACCGG
196 TGGAAATATGTTTATGGATAATTACTTGATTGGTGAAATTGTTGGAAAAGAGAGAGAAATACCGG
6570071 TTGAACCTTCGGAAAGATTGGATGATACAGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAG
261 TTGAACCTTCGGAAAGATTGGATGATACAGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAG
6570136 TGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACT
326 TGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACT
*
6570201 ATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTGGTTCCA
391 ATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCA
6570266 GGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAAATTAGCTAGGTCACATGGGTGGTACT
456 GGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAAATTAGCTAGGTCACATGGGTGGTACT
6570331 GAGTGTTCACCATGTGTACAAGAGAGCCGAACTATATGATGGGTGGAGCTATGTGCTGAAACCAC
521 GAGTGTTCACCATGTGTACAAGAGAGCCGAACTATATGATGGGTGGAGCTATGTGCTGAAACCAC
6570396 CAAGTATCGAGGATTGATCCAAAGTGTTCAAC
586 CAAGTATCGAGGATTGATCCAAAGTGTTCAAC
*
6570428 TACATGAAGTGCATTGAATTATCATACATAAATGTGATTCTATGATTAGGGATATTATGGGAAAT
1 TACATGAAGAGCATTGAATTATCATACATAAATGTGATTCTATGATTAGGGATATTATGGGAAAT
6570493 TGTAAGTTCATATGATTTTTAATAAGGCAATGCGTAATTTAATGTTATTGCCTTGATATTAAATG
66 TGTAAGTTCATATGATTTTTAATAAGGCAATGCGTAATTTAATGTTATTGCCTTGATATTAAATG
6570558 AGATGTAAGTTTATATGTAAGTAATACATCAATATTACTTGTATTATGATATTTTATAATAATAT
131 AGATGTAAGTTTATATGTAAGTAATACATCAATATTACTTGTATTATGATATTTTATAATAATAT
6570623 TGGAAATATGTTTATGGATAATTACTTGATTGGTGAAATTGTTGGAAAAGAGAGAGAAATACCGG
196 TGGAAATATGTTTATGGATAATTACTTGATTGGTGAAATTGTTGGAAAAGAGAGAGAAATACCGG
6570688 TTGAACCTTCGGAAAGATTGGATGATACAGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAG
261 TTGAACCTTCGGAAAGATTGGATGATACAGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAG
6570753 TGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACT
326 TGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACT
*
6570818 ATGTGTACACCATGTAGACAAGAGAGCTATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCA
391 ATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCA
*
6570883 GGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAAATTGGCTAGGTCACATGGGTGGTACT
456 GGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAAATTAGCTAGGTCACATGGGTGGTACT
*
6570948 GAGTGTTCACCATGTGTACAAGAGAGCCGAACTATATGATGGGTGGAGCTATGTGTTGAAACCAC
521 GAGTGTTCACCATGTGTACAAGAGAGCCGAACTATATGATGGGTGGAGCTATGTGCTGAAACCAC
* *
6571013 CAGGTATCGAGGATTGATCCGAAGTGTTCAAC
586 CAAGTATCGAGGATTGATCCAAAGTGTTCAAC
6571045 GGGAGACTCT
Statistics
Matches: 608, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
617 608 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.31
Consensus pattern (617 bp):
TACATGAAGAGCATTGAATTATCATACATAAATGTGATTCTATGATTAGGGATATTATGGGAAAT
TGTAAGTTCATATGATTTTTAATAAGGCAATGCGTAATTTAATGTTATTGCCTTGATATTAAATG
AGATGTAAGTTTATATGTAAGTAATACATCAATATTACTTGTATTATGATATTTTATAATAATAT
TGGAAATATGTTTATGGATAATTACTTGATTGGTGAAATTGTTGGAAAAGAGAGAGAAATACCGG
TTGAACCTTCGGAAAGATTGGATGATACAGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAG
TGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACT
ATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCA
GGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAAATTAGCTAGGTCACATGGGTGGTACT
GAGTGTTCACCATGTGTACAAGAGAGCCGAACTATATGATGGGTGGAGCTATGTGCTGAAACCAC
CAAGTATCGAGGATTGATCCAAAGTGTTCAAC
Found at i:6582828 original size:47 final size:47
Alignment explanation
Indices: 6582765--6583068 Score: 428
Period size: 47 Copynumber: 6.4 Consensus size: 47
6582755 CCCTTCGGGA
* * *
6582765 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
6582812 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
6582859 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
6582906 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
6582953 CCTATCACATATATACACTTTCAAATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
6583000 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
6583049 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
6583069 GTACATCAAT
Statistics
Matches: 236, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 192 0.81
49 44 0.19
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:6588018 original size:38 final size:39
Alignment explanation
Indices: 6587963--6588044 Score: 114
Period size: 38 Copynumber: 2.1 Consensus size: 39
6587953 CAGCCAGAGT
*
6587963 TTGGGAAAGAATTCACTATTTACAA-GAACGCATCACATG
1 TTGGGAAAGAATTCACTATGTACAACG-ACGCATCACATG
* *
6588002 TTGGG-AAGAGTTCACTATGTACAACGATGCATCACATG
1 TTGGGAAAGAATTCACTATGTACAACGACGCATCACATG
6588040 TTGGG
1 TTGGG
6588045 TTGGGATGCG
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
38 33 0.85
39 6 0.15
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (39 bp):
TTGGGAAAGAATTCACTATGTACAACGACGCATCACATG
Found at i:6591741 original size:27 final size:27
Alignment explanation
Indices: 6591711--6591766 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
6591701 GTACCTAGAC
6591711 CCCCTA-ATTGGAAAAATAACTGAAATG
1 CCCCTACA-TGGAAAAATAACTGAAATG
* * *
6591738 CCCCTACATGGTAAAATGACTGATATG
1 CCCCTACATGGAAAAATAACTGAAATG
6591765 CC
1 CC
6591767 TTATGAGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (27 bp):
CCCCTACATGGAAAAATAACTGAAATG
Found at i:6593983 original size:56 final size:56
Alignment explanation
Indices: 6593923--6594061 Score: 206
Period size: 56 Copynumber: 2.5 Consensus size: 56
6593913 TCCTAGACAG
*
6593923 GGTCTTACTCGCACACATATATCGGAGTCACAAATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACATATATCGGAGTCACAAATCGATACCAACGTATTAAACAT
* * * * *
6593979 GGTCTTACTCGTACACATATATCAGAGTCACATATCGATACCAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAGTCACAAATCGATACCAACGTATTAAACAT
*
6594035 GGTCTTACTCGCACATCAAATATCGGA
1 GGTCTTACTCGCACA-CATATATCGGA
6594062 ATCCTATGTC
Statistics
Matches: 73, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
56 64 0.88
57 9 0.12
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAGTCACAAATCGATACCAACGTATTAAACAT
Found at i:6597614 original size:29 final size:29
Alignment explanation
Indices: 6597582--6597658 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
6597572 AATCATATTC
* *
6597582 ATATGACCTATTAGGCCCAAATCACCTAT
1 ATATGACCCATTAGGCCCAAATCACATAT
* * *
6597611 ATATGGCCCATTAGGCCTAAATCACATTT
1 ATATGACCCATTAGGCCCAAATCACATAT
* * *
6597640 ATATGGCCCGTTAAGCCCA
1 ATATGACCCATTAGGCCCA
6597659 GTCACATTCA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (29 bp):
ATATGACCCATTAGGCCCAAATCACATAT
Found at i:6600293 original size:29 final size:29
Alignment explanation
Indices: 6600261--6600366 Score: 140
Period size: 29 Copynumber: 3.7 Consensus size: 29
6600251 AATCATATTC
6600261 ATATGGCCCATTAGGCCCAAATCACCTAT
1 ATATGGCCCATTAGGCCCAAATCACCTAT
* * *
6600290 ATATGGCCTATTAGGCCTAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACCTAT
* * *
6600319 ATATTGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACCTAT
**
6600348 ATATGGCCTGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
6600367 GTCACATTCA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTAT
Found at i:6608937 original size:28 final size:27
Alignment explanation
Indices: 6608906--6608968 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
6608896 AATTACTAGA
* *
6608906 ATACCCCTAAGTATGGAAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATGACCATT
*
6608934 ATACCCCT-AGGTGCAAAATGACCATT
1 ATACCCCTAAGATGCAAAATGACCATT
*
6608960 TTACCCCTA
1 ATACCCCTA
6608969 GGGTTAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 20 0.67
27 2 0.07
28 8 0.27
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATGACCATT
Found at i:6610838 original size:37 final size:36
Alignment explanation
Indices: 6610766--6610842 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
6610756 TACGTGCATT
*
6610766 ATGTGCAATTCAGGGGTACTAAATACAAGCAGGGGC
1 ATGTGCAATGCAGGGGTACTAAATACAAGCAGGGGC
* * *
6610802 ATGTTCAATGCAGGGGTACTGAAGTATAAGCAGGGGC
1 ATGTGCAATGCAGGGGTACT-AAATACAAGCAGGGGC
6610839 ATGT
1 ATGT
6610843 ATATGCAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 18 0.50
37 18 0.50
ACGTcount: A:0.31, C:0.14, G:0.32, T:0.22
Consensus pattern (36 bp):
ATGTGCAATGCAGGGGTACTAAATACAAGCAGGGGC
Found at i:6617549 original size:40 final size:40
Alignment explanation
Indices: 6617498--6617687 Score: 267
Period size: 40 Copynumber: 4.8 Consensus size: 40
6617488 GAATATAGCT
*
6617498 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
** *
6617538 GTTCGCACAAATGCCTTCGAGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
6617578 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
6617618 ACTCGCACAAATGCCTTCGAGACTTAGCCTGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
6617658 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
6617688 CGTTATCATC
Statistics
Matches: 134, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 132 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:6629406 original size:28 final size:28
Alignment explanation
Indices: 6629366--6629473 Score: 123
Period size: 28 Copynumber: 3.9 Consensus size: 28
6629356 ACATACCTGT
* *
6629366 ATATAGCCCATTAGGCCCTAA-CTCTTTC
1 ATATGGCCCATTAGGCCC-AATCACTTTC
6629394 ATATGGCCCATTAGGCCCAATCACATTT-
1 ATATGGCCCATTAGGCCCAATCAC-TTTC
*
6629422 ATGTGGCCCATTAGGCCCAAATCACTTTC
1 ATATGGCCCATTAGGCCC-AATCACTTTC
* *
6629451 ATACGG-CTATTAGGCCCAATCAC
1 ATATGGCCCATTAGGCCCAATCAC
6629474 ATTTATAGCT
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
27 8 0.11
28 49 0.70
29 13 0.19
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCACTTTC
Found at i:6629432 original size:56 final size:56
Alignment explanation
Indices: 6629371--6629479 Score: 166
Period size: 56 Copynumber: 1.9 Consensus size: 56
6629361 CCTGTATATA
* * *
6629371 GCCCATTAGGCCCTAA-CTCTTTCATATGGCCCATTAGGCCCAATCACATTTATGTG
1 GCCCATTAGGCCCAAATCACTTTCATACGG-CCATTAGGCCCAATCACATTTATGTG
*
6629427 GCCCATTAGGCCCAAATCACTTTCATACGGCTATTAGGCCCAATCACATTTAT
1 GCCCATTAGGCCCAAATCACTTTCATACGGCCATTAGGCCCAATCACATTTAT
6629480 AGCTATGCTC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
56 37 0.77
57 11 0.23
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (56 bp):
GCCCATTAGGCCCAAATCACTTTCATACGGCCATTAGGCCCAATCACATTTATGTG
Found at i:6629717 original size:16 final size:16
Alignment explanation
Indices: 6629696--6629737 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
6629686 CTAAACTTTT
*
6629696 AGCTTTTTGGCATTTC
1 AGCTTTTCGGCATTTC
*
6629712 AGCTTTTCGGTATTTC
1 AGCTTTTCGGCATTTC
6629728 AGCTTTTCGG
1 AGCTTTTCGG
6629738 GATCTACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.19, G:0.21, T:0.48
Consensus pattern (16 bp):
AGCTTTTCGGCATTTC
Found at i:6632697 original size:96 final size:96
Alignment explanation
Indices: 6632592--6632766 Score: 278
Period size: 96 Copynumber: 1.8 Consensus size: 96
6632582 CTTTTCTCGC
* * * * *
6632592 TGGATATTTAATTGGACATTGGAAACACTTGTGATCTTTTGAACTACACTAGTAATAATGCACAA
1 TGGATATTTAATTGGACATTAGAAACACTTATGATCTTTTGAACTACACCAATAACAATGCACAA
6632657 AAGGTGATAGCTCAATTGTATTCTCTCTATT
66 AAGGTGATAGCTCAATTGTATTCTCTCTATT
* * *
6632688 TGGATATTTAATTGGACATTAGAGACCCTTATGATCTTTTGAACTACACCAATAACATTGCACAA
1 TGGATATTTAATTGGACATTAGAAACACTTATGATCTTTTGAACTACACCAATAACAATGCACAA
6632753 AAGGTGATAGCTCA
66 AAGGTGATAGCTCA
6632767 CAGTCATTAG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 71 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Consensus pattern (96 bp):
TGGATATTTAATTGGACATTAGAAACACTTATGATCTTTTGAACTACACCAATAACAATGCACAA
AAGGTGATAGCTCAATTGTATTCTCTCTATT
Found at i:6634036 original size:22 final size:22
Alignment explanation
Indices: 6634005--6634053 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
6633995 TCCAAGTTAG
*
6634005 ATAAAATAATTAAAAT-AAATA
1 ATAAGATAATTAAAATAAAATA
6634026 ACTAAGATAATTAAAATAAAATA
1 A-TAAGATAATTAAAATAAAATA
6634049 ATAAG
1 ATAAG
6634054 TCTACGATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 18 0.72
23 6 0.24
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (22 bp):
ATAAGATAATTAAAATAAAATA
Found at i:6638578 original size:39 final size:39
Alignment explanation
Indices: 6638466--6638581 Score: 108
Period size: 40 Copynumber: 2.9 Consensus size: 39
6638456 CTGGTGAGTT
* *
6638466 AAATCAGGCTTATGCCTAGCAGGCTTATTGCCGGTGTATA
1 AAATCAGGCTTAGGCCTAGCAGGCTTA-TGCCGGTGTAGA
* * ** *
6638506 AAATCAGACTTTGAGTTTAGCAGGCCTTGTGCCGGTGT-GA
1 AAATCAGGCTTAG-GCCTAGCAGG-CTTATGCCGGTGTAGA
* *
6638546 GATTCAGGCTTAGGCCTAGCAGGCTTTATGCCGGTG
1 AAATCAGGCTTAGGCCTAGCAGGC-TTATGCCGGTG
6638582 AATTATTATA
Statistics
Matches: 59, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
38 1 0.02
39 18 0.31
40 20 0.34
41 17 0.29
42 3 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (39 bp):
AAATCAGGCTTAGGCCTAGCAGGCTTATGCCGGTGTAGA
Found at i:6639294 original size:19 final size:19
Alignment explanation
Indices: 6639267--6639319 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
6639257 TTGGTAAAAT
6639267 GAAAGTATATGTATTATAA
1 GAAAGTATATGTATTATAA
*
6639286 GAAATTATATGTATTATAA
1 GAAAGTATATGTATTATAA
*
6639305 GAAAGTATATATATT
1 GAAAGTATATGTATT
6639320 GTGGCTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (19 bp):
GAAAGTATATGTATTATAA
Found at i:6644251 original size:40 final size:40
Alignment explanation
Indices: 6644215--6644370 Score: 251
Period size: 40 Copynumber: 3.9 Consensus size: 40
6644205 GGATATAGCT
*
6644215 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
6644255 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
6644295 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
6644335 ACTAGCACAAATGCCTTCGGGACTTAGCTCGGAATT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATT
6644371 TGTCACTATT
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 107 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:6646091 original size:16 final size:17
Alignment explanation
Indices: 6646050--6646094 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
6646040 TTCCAAATTG
*
6646050 GTTTAATTATTTTAATC
1 GTTTATTTATTTTAATC
* *
6646067 GTTTGTTTATTTT-ATT
1 GTTTATTTATTTTAATC
6646083 GTTTATTTATTT
1 GTTTATTTATTT
6646095 ATTTTAGCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.20, C:0.02, G:0.09, T:0.69
Consensus pattern (17 bp):
GTTTATTTATTTTAATC
Found at i:6647678 original size:75 final size:75
Alignment explanation
Indices: 6647540--6647687 Score: 199
Period size: 75 Copynumber: 2.0 Consensus size: 75
6647530 ATATCACAAG
* * * * *
6647540 TCCAATTCGTATTGGGCCCCTGATAAAATCCCAAGCCCATGAAACATTTTTATGTGGGCTTTAAG
1 TCCAATTCGTATTGGGCCCCTAATAAAATCCCAAGCCCATGAAACATTTTCATATGAGATTTAAG
6647605 GCCTAAACTA
66 GCCTAAACTA
* * * *
6647615 TCCAATTTGTATTGTGCCCCTAATAAAATCCCAAG-CCATGCAACGTTTTGCATATGAGATTTAA
1 TCCAATTCGTATTGGGCCCCTAATAAAATCCCAAGCCCATGAAACATTTT-CATATGAGATTTAA
6647679 GGCCTAAAC
65 GGCCTAAAC
6647688 CGTCCAACTT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
74 12 0.19
75 51 0.81
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (75 bp):
TCCAATTCGTATTGGGCCCCTAATAAAATCCCAAGCCCATGAAACATTTTCATATGAGATTTAAG
GCCTAAACTA
Found at i:6649161 original size:12 final size:12
Alignment explanation
Indices: 6649144--6649189 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
6649134 CTCATTTTCC
6649144 TCTTTTTCAATT
1 TCTTTTTCAATT
**
6649156 TCTTTTTCTTTT
1 TCTTTTTCAATT
**
6649168 TCTTTTTCAAAC
1 TCTTTTTCAATT
6649180 TCTTTTTCAA
1 TCTTTTTCAA
6649190 GGTTCTTTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.65
Consensus pattern (12 bp):
TCTTTTTCAATT
Found at i:6649251 original size:18 final size:18
Alignment explanation
Indices: 6649223--6649262 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
6649213 TTTTCTTTTG
6649223 CTTTT-CTTTCAAGTTCT
1 CTTTTCCTTTCAAGTTCT
*
6649240 CTTTTCCTTTCAATTTCT
1 CTTTTCCTTTCAAGTTCT
6649258 -TTTTC
1 CTTTTC
6649263 TCTCATTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.10, C:0.25, G:0.03, T:0.62
Consensus pattern (18 bp):
CTTTTCCTTTCAAGTTCT
Found at i:6650728 original size:14 final size:14
Alignment explanation
Indices: 6650709--6650736 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6650699 TACAAACACT
6650709 AATTTTGTTTTTAA
1 AATTTTGTTTTTAA
6650723 AATTTTGTTTTTAA
1 AATTTTGTTTTTAA
6650737 CTCTTGTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (14 bp):
AATTTTGTTTTTAA
Found at i:6651103 original size:25 final size:27
Alignment explanation
Indices: 6651075--6651124 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
6651065 ATTTAGCATT
6651075 AAACAA-AAACTTAA-AACACTCATAA
1 AAACAACAAACTTAATAACACTCATAA
* *
6651100 AAACAACATATTTAATAACACTCAT
1 AAACAACAAACTTAATAACACTCAT
6651125 GCACACGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 6 0.29
26 6 0.29
27 9 0.43
ACGTcount: A:0.58, C:0.20, G:0.00, T:0.22
Consensus pattern (27 bp):
AAACAACAAACTTAATAACACTCATAA
Found at i:6651420 original size:50 final size:52
Alignment explanation
Indices: 6651310--6651430 Score: 183
Period size: 50 Copynumber: 2.4 Consensus size: 52
6651300 ATGAACAATT
* * *
6651310 GAGTTACTTAATGCATAACTTAATTTAATGATGCAAACTTTAACTAACATGA
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
*
6651362 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAAC-TTAACTAACATGA
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
*
6651412 GAGTTACATAATCCATGAC
1 GAGTTACATAATGCATGAC
6651431 TTTGTTAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
50 30 0.48
51 11 0.17
52 22 0.35
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
Found at i:6652523 original size:25 final size:25
Alignment explanation
Indices: 6652486--6652537 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
6652476 TCACACATGT
6652486 TAAACAAACGAGATTTAGGCATAGG
1 TAAACAAACGAGATTTAGGCATAGG
*
6652511 TAAACAAATGAGATTTAGGCATAGG
1 TAAACAAACGAGATTTAGGCATAGG
6652536 TA
1 TA
6652538 TGTTCAAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.44, C:0.10, G:0.23, T:0.23
Consensus pattern (25 bp):
TAAACAAACGAGATTTAGGCATAGG
Found at i:6655575 original size:50 final size:52
Alignment explanation
Indices: 6655475--6655588 Score: 171
Period size: 50 Copynumber: 2.2 Consensus size: 52
6655465 TTGAGTTTCT
* *
6655475 TAATGCATGACTCAATTTAATGATGTAAACTTTAACTAACATGGGAGTTACA
1 TAATGCATGACTCAATTTAATGATGCAAACTTTAACTAACATGAGAGTTACA
*
6655527 TAATGCATGTCAT-AATTT-ATGATGCAAAC-TTAACTAACATGAGAGTTACA
1 TAATGCATGAC-TCAATTTAATGATGCAAACTTTAACTAACATGAGAGTTACA
6655577 TAATGCATGACT
1 TAATGCATGACT
6655589 TTATTAAATG
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
49 1 0.02
50 30 0.53
51 10 0.18
52 15 0.26
53 1 0.02
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (52 bp):
TAATGCATGACTCAATTTAATGATGCAAACTTTAACTAACATGAGAGTTACA
Found at i:6657924 original size:27 final size:27
Alignment explanation
Indices: 6657889--6657999 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
6657879 AGCATGGCTG
* *
6657889 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
6657915 CCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* *
6657943 CCAGA-ACAGAAATATGTGGCAGAGGCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
6657970 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
6657997 CCA
1 CCA
6658000 AGACGCTTCC
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
26 5 0.07
27 50 0.70
28 16 0.23
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:6657980 original size:54 final size:54
Alignment explanation
Indices: 6657889--6657999 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
6657879 AGCATGGCTG
* *
6657889 CCAGAACAGATAATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGGCACCAAATACAGATAATCGTGGCAGAGCCA
* * * *
6657943 CCAGAACAGAAATATGTGGCAGAGGCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGGCACCAAATACAGATAATCGTGGCAGAGCCA
6657997 CCA
1 CCA
6658000 AGACGCTTCC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGGCACCAAATACAGATAATCGTGGCAGAGCCA
Found at i:6660184 original size:55 final size:56
Alignment explanation
Indices: 6660119--6660233 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
6660109 AGCATGGCTG
* *
6660119 CCAGATACAGA-AAATGTGACAGAGTCACCAGAGACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
6660175 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
6660230 CCAG
1 CCAG
6660234 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:6660196 original size:27 final size:27
Alignment explanation
Indices: 6660144--6660233 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
6660134 GTGACAGAGT
6660144 CACCAGAGACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
6660173 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
6660200 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
6660228 CACCAG
1 CACCAG
6660234 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:6660386 original size:28 final size:28
Alignment explanation
Indices: 6660339--6660403 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
6660329 AAATTAACCC
*
6660339 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
6660367 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
6660395 TAGGGGTAT
1 TAGGGGTAT
6660404 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:6672013 original size:42 final size:43
Alignment explanation
Indices: 6671956--6672056 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 43
6671946 TGTGATTTAT
* * *
6671956 ATGTAAGACCATGTCTGGGACATTGACATCG-TATATGATTTC
1 ATGTAAGACCATGTCTGGAACAGTGACATCGATATATGATTAC
* * * *
6671998 ATGTAAGACCCTGTCTGGAACAGTGGCATTGATATTTGATTAC
1 ATGTAAGACCATGTCTGGAACAGTGACATCGATATATGATTAC
*
6672041 ATGTAAGACCACGTCT
1 ATGTAAGACCATGTCT
6672057 AGGACGTTGG
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 26 0.53
43 23 0.47
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32
Consensus pattern (43 bp):
ATGTAAGACCATGTCTGGAACAGTGACATCGATATATGATTAC
Found at i:6672071 original size:43 final size:43
Alignment explanation
Indices: 6671913--6672069 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
6671903 TGTGTTATCG
* * * *
6671913 TGTAAGACCATGCCTAGGACGTTGGCACCGAT-TTGTGATTTATA
1 TGTAAGACCACGTCTAGGACGTTGGCATCGATATT-TGA-TTACA
* * * * * *
6671957 TGTAAGACCATGTCTGGGACATTGACATCG-TATATGATTTCA
1 TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTACA
*
6671999 TGTAAGACC-CTGTCT-GGAACAG-TGGCATTGATATTTGATTACA
1 TGTAAGACCAC-GTCTAGG-AC-GTTGGCATCGATATTTGATTACA
6672042 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTAGGACGTTGGCAT
6672070 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 14, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
41 2 0.02
42 25 0.27
43 35 0.38
44 29 0.32
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTACA
Found at i:6675963 original size:46 final size:46
Alignment explanation
Indices: 6675839--6676046 Score: 151
Period size: 46 Copynumber: 4.5 Consensus size: 46
6675829 TCGATGTCGT
* *
6675839 TGTCCCAAACATGGTCTTACA-TA-GACACATCTCGTA-GCTGATGCA
1 TGTCCCAAACAT-GTCTTACACTACCACTCATCTCG-AGGCTGATGCA
* * *
6675884 TGTCCCAAACATGTCTTACACTGGCTTA-T-GTCTCGAGGCTGATGCA
1 TGTCCCAAACATGTCTTACACT-AC-CACTCATCTCGAGGCTGATGCA
* * *
6675930 TGTCCCAAACATGTCTTACACTACCACTCGTCTCAATG-TCGATGCCA
1 TGTCCCAAACATGTCTTACACTACCACTCATCTCGAGGCT-GATG-CA
* * * * * * *
6675977 TGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGTCCGATGCA
1 TGTCCCAAACAT-GTCTTACACTACCACTCAT-CTCGAGGCTGATGCA
*
6676024 TGTCCCAGACATGTCTTACACTA
1 TGTCCCAAACATGTCTTACACTA
6676047 GATCCCGCAA
Statistics
Matches: 133, Mismatches: 18, Indels: 23
0.76 0.10 0.13
Matches are distributed among these distances:
44 9 0.07
45 17 0.13
46 58 0.44
47 27 0.20
48 21 0.16
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
TGTCCCAAACATGTCTTACACTACCACTCATCTCGAGGCTGATGCA
Found at i:6676026 original size:47 final size:44
Alignment explanation
Indices: 6675878--6676047 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 44
6675868 TCTCGTAGCT
* * * * *
6675878 GATGCATGTCCCAAACATGTCTTACACTGGCTTATGTCTCGA-GGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-T-CGTCTCAATGTC
* *
6675923 TGATGCATGTCCCAAACATGTCTTACACTACCACTCGTCTCAATGTC
1 -GATGCATGTCCCAGACATGTCTTACACTA--GCTCGTCTCAATGTC
6675970 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCAT-AATGTGTCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCGTC-TCAA--TGT-C
6676018 GATGCATGTCCCAGACATGTCTTACACTAG
1 GATGCATGTCCCAGACATGTCTTACACTAG
6676048 ATCCCGCAAG
Statistics
Matches: 108, Mismatches: 7, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
45 4 0.04
46 54 0.50
47 33 0.31
48 17 0.16
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCGTCTCAATGTC
Found at i:6683544 original size:46 final size:44
Alignment explanation
Indices: 6683436--6683653 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 44
6683426 ATATCTGCGT
* * * * *
6683436 CGATGCCATGTCCCAAACAAGGTCTTACACTGACAAATCTCGTA-GC
1 CGATG-CATGTCCCAGAC-ATGTCTTACACTGGCATATCTC-AAGGC
* * *
6683482 TGATGCATGTCTCAGACATGTCTTACACTGGCTTATGTCTCAAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC--ATATCTCAAGGC
* * *
6683528 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCA-T-ATCTCAAGGC
*
6683574 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCAT-AATGTGTC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCATATC-TCAA-G-G-C
*
6683622 CGATGCATGTCCCAAACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
6683654 TCACACAAGT
Statistics
Matches: 142, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
44 14 0.10
45 15 0.11
46 67 0.47
47 28 0.20
48 18 0.13
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCATATCTCAAGGC
Found at i:6683602 original size:94 final size:92
Alignment explanation
Indices: 6683382--6683651 Score: 243
Period size: 94 Copynumber: 2.9 Consensus size: 92
6683372 ATGGGAGCAG
* ** * * *
6683382 GTGCCGATGCCATGTCCCAAACATGGTCTTACACAAGCTCTA-GCATATC-TGCGTCGATGCCAT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TATG--TCTCAAGCGCCGATG-CAT
*
6683445 GTCCCAAACAAGGTCTTACACTGACAAATCTC
62 GTCCCAAAC-ATGTCTTACACTGACAAATCTC
* *
6683477 GTAGCTGATG-CATGTCTCAGACAT-GTCTTACACTGGCTTATGTCTCAAG-GCCGATGCATGTC
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATGTCTCAAGCGCCGATGCATGTC
* **
6683539 CCAGACATGTCTTACACTAGCACTCATCTC
65 CCAAACATGTCTTACACT-G-ACAAATCTC
* *
6683569 GATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC---TCTCAT-AATGTGTCCGATGCAT
1 G-TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATGTC-TCAA-GCG-CCGATGCAT
6683630 GTCCCAAACATGTCTTACACTG
62 GTCCCAAACATGTCTTACACTG
6683652 GCTCACACAA
Statistics
Matches: 147, Mismatches: 16, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
90 11 0.07
91 17 0.12
92 25 0.17
93 19 0.13
94 55 0.37
95 14 0.10
96 6 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (92 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATGTCTCAAGCGCCGATGCATGTCC
CAAACATGTCTTACACTGACAAATCTC
Found at i:6683654 original size:46 final size:46
Alignment explanation
Indices: 6683483--6683655 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
6683473 TCTCGTAGCT
* * * *
6683483 GATGCATGTCTCAGACATGTCTTACACTGGCT-T-ATGTCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCA--TATCGATGCC
* * *
6683529 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCGATGCC
6683575 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G-TGTCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-ATCGATG-CC
*
6683623 GATGCATGTCCCAAACATGTCTTACACTGGCTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTC
6683656 ACACAAGTGA
Statistics
Matches: 112, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
46 56 0.50
47 30 0.27
48 25 0.22
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCGATGCC
Found at i:6685078 original size:37 final size:37
Alignment explanation
Indices: 6685028--6685106 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
6685018 TTATTACGAA
* * *
6685028 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
6685065 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
6685102 GTCTT
1 GTCTT
6685107 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:6685303 original size:47 final size:47
Alignment explanation
Indices: 6685225--6685712 Score: 715
Period size: 47 Copynumber: 10.1 Consensus size: 47
6685215 CCCTTCGGGA
* * * * * *
6685225 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
6685272 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
6685319 CTTATCTCATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6685366 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6685413 CTTATCACATATATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATA--CACTTTCACATTCATCACATCGGCCATTAGGC
*
6685464 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6685511 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6685558 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6685609 CTTATCACATATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATA--TACACTTTCACATTCATCACATCGGCCATTAGGC
* *
6685660 CCTAACACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6685709 CTTA
1 CTTA
6685713 CTATCATTTC
Statistics
Matches: 408, Mismatches: 23, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
47 219 0.54
49 57 0.14
51 132 0.32
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:6685484 original size:145 final size:144
Alignment explanation
Indices: 6685225--6685712 Score: 757
Period size: 145 Copynumber: 3.4 Consensus size: 144
6685215 CCCTTCGGGA
* * * * * * * *
6685225 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
*
6685287 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATTTACACTTTCACATTCATCAC
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCAC
6685352 ATCGGCCATTAGGC
131 ATCGGCCATTAGGC
*
6685366 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
6685431 GCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCA
66 -CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCA
6685496 CATCGGCCATTAGGC
130 CATCGGCCATTAGGC
*
6685511 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
*
6685576 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATGTACACTTTCACATTC
66 -CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC--ATATA--TACACTTTCACATTC
6685641 ATCACATCGGCCATTAGGC
126 ATCACATCGGCCATTAGGC
* *
6685660 CCTAACACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
6685713 CTATCATTTC
Statistics
Matches: 322, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
141 46 0.14
143 7 0.02
145 182 0.57
147 5 0.02
149 40 0.12
151 42 0.13
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (144 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGC
Found at i:6694493 original size:40 final size:40
Alignment explanation
Indices: 6694449--6694710 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
6694439 GCTCCTCGTT
* *
6694449 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
6694489 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
6694529 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
6694568 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
6694607 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
6694646 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
6694687 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
6694711 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:6700298 original size:40 final size:40
Alignment explanation
Indices: 6700254--6700517 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
6700244 GCTCCTCGTT
* *
6700254 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
6700294 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
6700334 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
6700374 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
6700414 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
6700453 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
6700494 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
6700518 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:6709848 original size:46 final size:47
Alignment explanation
Indices: 6709792--6709922 Score: 180
Period size: 46 Copynumber: 2.8 Consensus size: 47
6709782 TGGTTGAGCA
6709792 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-CAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACAAATG
* * * *
6709838 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG--ACAAATG
6709884 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT
6709923 ACGAACGCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.06
45 2 0.03
46 61 0.85
47 2 0.03
49 3 0.04
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACAAATG
Found at i:6709862 original size:20 final size:20
Alignment explanation
Indices: 6709837--6709909 Score: 56
Period size: 20 Copynumber: 3.4 Consensus size: 20
6709827 GGATGCAAAT
6709837 GTCCGAGCTCGTTGAGTTGA
1 GTCCGAGCTCGTTGAGTTGA
* * *
6709857 GTCCGAGTTCGTGAGATGTAACTAA
1 GTCCGAGCTCGT-TGA-GT---TGA
*
6709882 TGTCCGAACTCGTTGAGTTGA
1 -GTCCGAGCTCGTTGAGTTGA
6709903 GTCCGAG
1 GTCCGAG
6709910 TTCACTTATG
Statistics
Matches: 39, Mismatches: 8, Indels: 12
0.66 0.14 0.20
Matches are distributed among these distances:
20 17 0.44
21 4 0.10
22 2 0.05
24 2 0.05
25 4 0.10
26 10 0.26
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.29
Consensus pattern (20 bp):
GTCCGAGCTCGTTGAGTTGA
Found at i:6713960 original size:43 final size:43
Alignment explanation
Indices: 6713817--6714020 Score: 199
Period size: 43 Copynumber: 4.9 Consensus size: 43
6713807 TTTTATCAAA
* * * *
6713817 TCACCGGCATT-TAGCCTGCTAGGTTTTAAACCCGA-ATTCA-
1 TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATACTCAT
** * * * *
6713857 TCACCGGCACGA-AGCCTGCTAGACTTTAAGTCTGA-ACTCAT
1 TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATACTCAT
*
6713898 TCACCGACATT-TAGCCTGCTAGGCTTGAAGCCCGATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATACTCA-T
* *
6713940 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA-TTAT
1 TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATACTCAT
**
6713982 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 -TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATA
6714021 ATATTATTCA
Statistics
Matches: 138, Mismatches: 19, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
40 31 0.22
41 30 0.22
42 13 0.09
43 64 0.46
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGATACTCAT
Found at i:6714060 original size:86 final size:85
Alignment explanation
Indices: 6713898--6714061 Score: 199
Period size: 86 Copynumber: 1.9 Consensus size: 85
6713888 CTGAACTCAT
** * * *
6713898 TCACCGACATTTAGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAG
1 TCACCGACATTTAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCAGCATTAAAACCTGCTAG
6713963 GCTCGAAGCCCGATATTATC
66 GCTCGAAGCCCGATATTATC
* *
6713983 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAAT-ATTATTCACCAGC-TTAAAACTTG
1 TCACCGACATT-TAGCCTGCTAGGCCCGAAGCCCGAT-ATCA-T-TTCACCAGCATTAAAACCTG
*
6714046 CTAGGC-CGAGGCCCGA
62 CTAGGCTCGAAGCCCGA
6714062 ATATCACATT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
85 10 0.15
86 33 0.49
87 16 0.24
88 8 0.12
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (85 bp):
TCACCGACATTTAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCAGCATTAAAACCTGCTAG
GCTCGAAGCCCGATATTATC
Found at i:6719832 original size:40 final size:40
Alignment explanation
Indices: 6719764--6719865 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 40
6719754 CAAACAAACG
* ** * *
6719764 ATACCTATTGAATCTACAT-AAATGTATGCACT-TTCGAGTC
1 ATACCTATTGAATCTA-TTGAAACATATGCACTCTT-AAGCC
*
6719804 ATACCTATTGAATCTATTGAAACATATGCGCTCTTAAGCC
1 ATACCTATTGAATCTATTGAAACATATGCACTCTTAAGCC
*
6719844 ATACCTACTGAATCTATTGAAA
1 ATACCTATTGAATCTATTGAAA
6719866 TGAATGCTCT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.02
40 50 0.94
41 2 0.04
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (40 bp):
ATACCTATTGAATCTATTGAAACATATGCACTCTTAAGCC
Found at i:6727906 original size:46 final size:46
Alignment explanation
Indices: 6727588--6727896 Score: 415
Period size: 46 Copynumber: 6.7 Consensus size: 46
6727578 TTATCTTTGA
* * * * *
6727588 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
*
6727634 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * *
6727680 CATGTTG-CATGATATCTTTTAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * * *
6727725 CACGTTGCCATGATATCTTTTAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * **
6727771 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
** *
6727817 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
6727863 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
6727897 CACAATTCAT
Statistics
Matches: 237, Mismatches: 24, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 46 0.19
46 191 0.81
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:6728333 original size:18 final size:18
Alignment explanation
Indices: 6728310--6728348 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
6728300 TTTCAAGTAT
6728310 TTAAAAATATAATTCAAG
1 TTAAAAATATAATTCAAG
6728328 TTAAAAATATAATTCAAG
1 TTAAAAATATAATTCAAG
6728346 TTA
1 TTA
6728349 TACGAACTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (18 bp):
TTAAAAATATAATTCAAG
Found at i:6729756 original size:11 final size:11
Alignment explanation
Indices: 6729740--6729787 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
6729730 CTTTATATAC
6729740 TAATAAAATAA
1 TAATAAAATAA
*
6729751 TAATAAAATATCT
1 TAATAAAATA--A
* *
6729764 TATTAAAATAT
1 TAATAAAATAA
6729775 TAATAAAATAA
1 TAATAAAATAA
6729786 TA
1 TA
6729788 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:6734906 original size:42 final size:42
Alignment explanation
Indices: 6734799--6734906 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
6734789 TATACCAAGG
* **
6734799 CATATCCCAAATATGGTCTTACATGCAAACTTGTATCGATGC
1 CATATCCCAGATATGGTCTTACATGCAAACTCATATCGATGC
* * * *
6734841 CAATAGCCCAGCTATGGTCTTACA-GGAAGTCTCATATCGATGC
1 C-ATATCCCAGATATGGTCTTACATGCAA-ACTCATATCGATGC
6734884 CATATCCCAGATATGGTCTTACA
1 CATATCCCAGATATGGTCTTACA
6734907 CGTAGTCTTA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 24 0.44
43 31 0.56
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGCAAACTCATATCGATGC
Found at i:6737091 original size:88 final size:88
Alignment explanation
Indices: 6736942--6737115 Score: 312
Period size: 88 Copynumber: 2.0 Consensus size: 88
6736932 AGTCGTTCTT
*
6736942 GTGACACCCCTAATTTGACCCTAGTCAGAAAGTGGTTTCGGGACCACAAAACTGAGTCACAAAAA
1 GTGACACCCCTAATTTGACCCTAGTCAGAAAGTGGTTTCGGGACCACAAAACCGAGTCACAAAAA
6737007 TAATTAATTGTTACATTTTATTG
66 TAATTAATTGTTACATTTTATTG
* *
6737030 GTGACACCCCTAATTTGACCCTAGTCGGAAAGTGGTTTCGGGGCCACAAAACCGAGTCACAAAAA
1 GTGACACCCCTAATTTGACCCTAGTCAGAAAGTGGTTTCGGGACCACAAAACCGAGTCACAAAAA
*
6737095 TAATTAATTGTTATATTTTAT
66 TAATTAATTGTTACATTTTAT
6737116 GCTTATTATT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 82 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (88 bp):
GTGACACCCCTAATTTGACCCTAGTCAGAAAGTGGTTTCGGGACCACAAAACCGAGTCACAAAAA
TAATTAATTGTTACATTTTATTG
Found at i:6739846 original size:47 final size:47
Alignment explanation
Indices: 6739787--6740180 Score: 572
Period size: 47 Copynumber: 8.4 Consensus size: 47
6739777 GATGTACAAG
* ** *
6739787 GTGTGTATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
6739834 GTGTATATATGTGATAAGGTCGAATGGCCAATGTGATAAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
** * *
6739881 GTGTGCATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
6739928 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
6739975 GTGTATATATGTGATAAGGCCGAGTAGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
6740022 GTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
** * * * * * *
6740069 GCATATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
6740116 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
6740163 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
6740181 TCCCGAAGGG
Statistics
Matches: 307, Mismatches: 40, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 307 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:6739870 original size:22 final size:22
Alignment explanation
Indices: 6739842--6739964 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
6739832 AAGTGTATAT
6739842 ATGTGATAAGGTCGAATGGCCA
1 ATGTGATAAGGTCGAATGGCCA
*
6739864 ATGTGATAAATGT-GAAAGTGTG-CA
1 ATGTGAT-AAGGTCG-AA-TG-GCCA
* * *
6739888 TATGTGATAAGGCCTAATGGCCG
1 -ATGTGATAAGGTCGAATGGCCA
* ***
6739911 ATGTGATGAATGT-GAAAGTGTATA
1 ATGTGAT-AAGGTCG-AA-TGGCCA
*
6739935 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGTCGAATGGCCA
6739958 ATGTGAT
1 ATGTGAT
6739965 GAATGTGAAA
Statistics
Matches: 72, Mismatches: 17, Indels: 24
0.64 0.15 0.21
Matches are distributed among these distances:
22 23 0.32
23 17 0.24
24 16 0.22
25 16 0.22
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGTCGAATGGCCA
Found at i:6743065 original size:19 final size:20
Alignment explanation
Indices: 6743014--6743066 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
6743004 AGGGGCACAC
*
6743014 GCCTGTGTGGCCTGGGACAT
1 GCCTGTGTGGCCTGGAACAT
*
6743034 GCCTGTATGGCCTGGAACAT
1 GCCTGTGTGGCCTGGAACAT
6743054 GCC-GTGTGGCCTG
1 GCCTGTGTGGCCTG
6743067 CCCGTAGGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 9 0.30
20 21 0.70
ACGTcount: A:0.11, C:0.26, G:0.38, T:0.25
Consensus pattern (20 bp):
GCCTGTGTGGCCTGGAACAT
Found at i:6743613 original size:13 final size:14
Alignment explanation
Indices: 6743595--6743627 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
6743585 AATTAGCAAG
6743595 TCATACATACAAA-
1 TCATACATACAAAT
*
6743608 TCATACATATAAAT
1 TCATACATACAAAT
6743622 TCATAC
1 TCATAC
6743628 CAAACTATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.30
Consensus pattern (14 bp):
TCATACATACAAAT
Found at i:6745093 original size:16 final size:16
Alignment explanation
Indices: 6745072--6745102 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6745062 TTTCTTTTGT
*
6745072 TTCTTTATTTTATTTA
1 TTCTTTATTTCATTTA
6745088 TTCTTTATTTCATTT
1 TTCTTTATTTCATTT
6745103 TATTTACTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (16 bp):
TTCTTTATTTCATTTA
Found at i:6745254 original size:3 final size:3
Alignment explanation
Indices: 6745226--6745269 Score: 56
Period size: 3 Copynumber: 15.0 Consensus size: 3
6745216 CTATCTCAAT
*
6745226 TAA TAGA TAA -AA T-A TAA TAC TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6745270 GTAAATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
2 4 0.11
3 29 0.81
4 3 0.08
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:6752482 original size:10 final size:10
Alignment explanation
Indices: 6752464--6752513 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
6752454 AATATTTAAT
6752464 AAAAA-TATA
1 AAAAATTATA
6752473 AAAAATTAT-
1 AAAAATTATA
*
6752482 AAAAATCATA
1 AAAAATTATA
6752492 AAAAATTATA
1 AAAAATTATA
* *
6752502 ATAAATTGTA
1 AAAAATTATA
6752512 AA
1 AA
6752514 TTTTTATTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 13 0.38
10 21 0.62
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (10 bp):
AAAAATTATA
Found at i:6752486 original size:19 final size:19
Alignment explanation
Indices: 6752462--6752507 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 19
6752452 TTAATATTTA
6752462 ATAAAAAT-ATAAAAAATT
1 ATAAAAATCATAAAAAATT
6752480 ATAAAAATCATAAAAAATT
1 ATAAAAATCATAAAAAATT
6752499 ATAATAAAT
1 ATAA-AAAT
6752508 TGTAAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 8 0.31
19 14 0.54
20 4 0.15
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (19 bp):
ATAAAAATCATAAAAAATT
Found at i:6752831 original size:20 final size:20
Alignment explanation
Indices: 6752806--6752844 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
6752796 TTAAAGGGCC
6752806 TTTTTTATGCA-TTTTATAAT
1 TTTTTTATG-ATTTTTATAAT
6752826 TTTTTTATGATTTTTATAA
1 TTTTTTATGATTTTTATAA
6752845 AATTTTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (20 bp):
TTTTTTATGATTTTTATAAT
Done.