Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 191 of 284
Found at i:64468284 original size:3 final size:3
Alignment explanation
Indices: 64468276--64468304 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
64468266 ATCACATGTT
64468276 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
64468305 TGGATGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:64468425 original size:73 final size:73
Alignment explanation
Indices: 64468306--64468490 Score: 343
Period size: 73 Copynumber: 2.5 Consensus size: 73
64468296 ATTATTATTT
*
64468306 GGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTTA
1 GGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTTA
64468371 TTTTAAGC
66 TTTTAAGC
*
64468379 GGATGTAATTATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTTA
1 GGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTTA
*
64468444 TTTTAAGT
66 TTTTAAGC
64468452 GGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 GGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
64468491 GTCAAGTTGT
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 108 1.00
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41
Consensus pattern (73 bp):
GGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTTA
TTTTAAGC
Found at i:64471324 original size:13 final size:13
Alignment explanation
Indices: 64471306--64471341 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
64471296 ACCATAATTT
64471306 GAAAGAAAAGGAA
1 GAAAGAAAAGGAA
64471319 GAAAGAAAAGGAA
1 GAAAGAAAAGGAA
*
64471332 AAAAGAAAAG
1 GAAAGAAAAG
64471342 AAGGAGACGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
GAAAGAAAAGGAA
Found at i:64473623 original size:3 final size:3
Alignment explanation
Indices: 64473612--64473664 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
64473602 CAATAATACC
* * *
64473612 AAT ACT AAT AAT AGT AA- AGAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
64473657 AAT AAT AA
1 AAT AAT AA
64473665 AGTTAACAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
2 1 0.02
3 41 0.98
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:64474603 original size:20 final size:20
Alignment explanation
Indices: 64474567--64474606 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
64474557 TCCTATTGTT
64474567 GTTTTGTTACTGTTTGCTGC
1 GTTTTGTTACTGTTTGCTGC
*
64474587 GTTTCTGTTTCTG-TTGCTGC
1 GTTT-TGTTACTGTTTGCTGC
64474607 TTCCGTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.03, C:0.17, G:0.25, T:0.55
Consensus pattern (20 bp):
GTTTTGTTACTGTTTGCTGC
Found at i:64476585 original size:11 final size:11
Alignment explanation
Indices: 64476571--64476620 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
64476561 ATTTTCTCCA
*
64476571 TATTTTGCTAC
1 TATTTTGCTAT
*
64476582 TATTTTACTAT
1 TATTTTGCTAT
*
64476593 TATGTTGCTAT
1 TATTTTGCTAT
* *
64476604 TATTTTGTTGT
1 TATTTTGCTAT
64476615 TATTTT
1 TATTTT
64476621 TTGGATATTG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.18, C:0.08, G:0.10, T:0.64
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:64478193 original size:48 final size:48
Alignment explanation
Indices: 64478122--64478568 Score: 653
Period size: 48 Copynumber: 9.3 Consensus size: 48
64478112 TCGACGGAAA
* * *
64478122 TTCGGGCCATGATATTATCACTTCCGGTGCGAGTCATATTGATTTGGC
1 TTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTATATTGATTTGGC
* * *
64478170 TTCGGGCCATGATATTAGCACTTCGGGTACGAATTAAATTGATTTGGC
1 TTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTATATTGATTTGGC
* * *
64478218 TTCGGGCCATGATATTAGCACTTCGGGTACGAATTAAATTGATTTGGC
1 TTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTATATTGATTTGGC
* *
64478266 TTCGGGCCATGATATTAGCACTTCAGGTGCGAGTTATATTGATTTAGC
1 TTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTATATTGATTTGGC
* * *
64478314 TTCGGGCCATGATATTAGCACTTCGGGTACGAATTAAATTGATTTGGC
1 TTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTATATTGATTTGGC
* *
64478362 TTCGGGCCATGATATTAGCACTTCAGGTGCGAGTTATATTGATTTAGC
1 TTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTATATTGATTTGGC
* *
64478410 TTCGGGCCATGATATTAGCACTTTGGGTGCGAGTCATATTGATTTGGC
1 TTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTATATTGATTTGGC
* *
64478458 TTCTGGCCATGATATTAGCACTTCGGGTGCGAGTTATGTTGATTTGGC
1 TTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTATATTGATTTGGC
* * * * *
64478506 TTCGGGCCATGATATTAGCACGT-GGAGTGCGAGATACATTGAGTTGGT
1 TTCGGGCCATGATATTAGCACTTCGG-GTGCGAGTTATATTGATTTGGC
64478554 TTCGGGCCATGATAT
1 TTCGGGCCATGATAT
64478569 GGGCAGTTAG
Statistics
Matches: 362, Mismatches: 36, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
47 2 0.01
48 360 0.99
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (48 bp):
TTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTATATTGATTTGGC
Found at i:64478289 original size:21 final size:21
Alignment explanation
Indices: 64478265--64478340 Score: 62
Period size: 24 Copynumber: 3.3 Consensus size: 21
64478255 ATTGATTTGG
64478265 CTTCGGGCCATGATATTAGCA
1 CTTCGGGCCATGATATTAGCA
* * **
64478286 CTTCAGGTGCGAGTTATATTGATTTA
1 CTTC-GG-GCCA-TGATATT-A-GCA
64478312 GCTTCGGGCCATGATATTAGCA
1 -CTTCGGGCCATGATATTAGCA
64478334 CTTCGGG
1 CTTCGGG
64478341 TACGAATTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
21 11 0.27
22 3 0.07
23 4 0.10
24 12 0.29
25 4 0.10
26 3 0.07
27 4 0.10
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (21 bp):
CTTCGGGCCATGATATTAGCA
Found at i:64478385 original size:21 final size:21
Alignment explanation
Indices: 64478361--64478432 Score: 54
Period size: 24 Copynumber: 3.1 Consensus size: 21
64478351 ATTGATTTGG
64478361 CTTCGGGCCATGATATTAGCA
1 CTTCGGGCCATGATATTAGCA
* * **
64478382 CTTCAGGTGCGAGTTATATTGATTTA
1 CTTC-GG-GCCA-TGATATT-A-GCA
64478408 GCTTCGGGCCATGATATTAGCA
1 -CTTCGGGCCATGATATTAGCA
64478430 CTT
1 CTT
64478433 TGGGTGCGAG
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
21 7 0.19
22 3 0.08
23 4 0.11
24 12 0.32
25 4 0.11
26 3 0.08
27 4 0.11
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (21 bp):
CTTCGGGCCATGATATTAGCA
Found at i:64480434 original size:16 final size:16
Alignment explanation
Indices: 64480415--64480453 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
64480405 TAAAAAACTA
64480415 AAGTACTAAATTTTAT
1 AAGTACTAAATTTTAT
*
64480431 AAGTACTAAATTTTCT
1 AAGTACTAAATTTTAT
64480447 AAGTACT
1 AAGTACT
64480454 GAGTTCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (16 bp):
AAGTACTAAATTTTAT
Found at i:64487960 original size:20 final size:20
Alignment explanation
Indices: 64487909--64487971 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 20
64487899 TTAATTTTTT
64487909 AAAGAAA-AAAAAATAAAGG
1 AAAGAAATAAAAAATAAAGG
* * *
64487928 GATGAGATAAAAAAATAAAGG
1 AAAGAAAT-AAAAAATAAAGG
* *
64487949 AAAGAAATAAAAGAGAAAGG
1 AAAGAAATAAAAAATAAAGG
64487969 AAA
1 AAA
64487972 AGGGCTAAGA
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
19 4 0.12
20 13 0.38
21 17 0.50
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (20 bp):
AAAGAAATAAAAAATAAAGG
Found at i:64503451 original size:15 final size:15
Alignment explanation
Indices: 64503428--64503466 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
64503418 GTTGGTTAAT
* * *
64503428 AAAAGAAAAGCCAGA
1 AAAAAAAAAGCAACA
64503443 AAAAAAAAAGCAACA
1 AAAAAAAAAGCAACA
64503458 AAAAAAAAA
1 AAAAAAAAA
64503467 AGACCCGACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.79, C:0.10, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGCAACA
Found at i:64503754 original size:13 final size:13
Alignment explanation
Indices: 64503738--64503763 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64503728 GTATTAGTTG
64503738 GTTTTTTTTTATA
1 GTTTTTTTTTATA
64503751 GTTTTTTTTTATA
1 GTTTTTTTTTATA
64503764 TTCAAATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (13 bp):
GTTTTTTTTTATA
Found at i:64503865 original size:13 final size:13
Alignment explanation
Indices: 64503847--64503874 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
64503837 TGATGTTAAT
64503847 TAAATTGGGTTTA
1 TAAATTGGGTTTA
64503860 TAAATTGGGTTTA
1 TAAATTGGGTTTA
64503873 TA
1 TA
64503875 GAAAGAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.46
Consensus pattern (13 bp):
TAAATTGGGTTTA
Found at i:64505682 original size:21 final size:21
Alignment explanation
Indices: 64505656--64505697 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
64505646 GCCCCAAGAC
64505656 ATCACTCTCCAAAGCATTGTT
1 ATCACTCTCCAAAGCATTGTT
64505677 ATCACTCTCCAAAGCATTGTT
1 ATCACTCTCCAAAGCATTGTT
64505698 TGCTTGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.33
Consensus pattern (21 bp):
ATCACTCTCCAAAGCATTGTT
Found at i:64507762 original size:23 final size:23
Alignment explanation
Indices: 64507731--64507777 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
64507721 CAATGACGTT
* *
64507731 CCAATAAGAAGAATCACCATGTC
1 CCAACAAGAAGAACCACCATGTC
*
64507754 CCAACAAGAAGAACCACTATGTC
1 CCAACAAGAAGAACCACCATGTC
64507777 C
1 C
64507778 TGATGATGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.30, G:0.13, T:0.15
Consensus pattern (23 bp):
CCAACAAGAAGAACCACCATGTC
Found at i:64508985 original size:31 final size:33
Alignment explanation
Indices: 64508924--64508985 Score: 85
Period size: 31 Copynumber: 1.9 Consensus size: 33
64508914 CCCCCACAAA
64508924 TATTTTATTCCCCCTATTTACCCCCTAAAATATG
1 TATTTTATTCCCCC-ATTTACCCCCTAAAATATG
64508958 TATTTT-TTCCCCC-TTTACTCCCC-AAAAT
1 TATTTTATTCCCCCATTTAC-CCCCTAAAAT
64508986 CAAAATCCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
31 10 0.37
32 4 0.15
33 7 0.26
34 6 0.22
ACGTcount: A:0.24, C:0.32, G:0.02, T:0.42
Consensus pattern (33 bp):
TATTTTATTCCCCCATTTACCCCCTAAAATATG
Found at i:64513429 original size:13 final size:13
Alignment explanation
Indices: 64513411--64513439 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
64513401 TTTAGTTTAA
64513411 TTAGTTAATTAGT
1 TTAGTTAATTAGT
64513424 TTAGTTAATTAGT
1 TTAGTTAATTAGT
64513437 TTA
1 TTA
64513440 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:64516407 original size:31 final size:31
Alignment explanation
Indices: 64516370--64516434 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
64516360 AACACCCGAT
64516370 TAAAACCTTATTTTAAGATTGACAGCAGGAA
1 TAAAACCTTATTTTAAGATTGACAGCAGGAA
*
64516401 TAAAACCTTATTTTAAGATTGATAGCAGGAA
1 TAAAACCTTATTTTAAGATTGACAGCAGGAA
64516432 TAA
1 TAA
64516435 GGAGTATGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (31 bp):
TAAAACCTTATTTTAAGATTGACAGCAGGAA
Found at i:64517598 original size:6 final size:6
Alignment explanation
Indices: 64517583--64517628 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
64517573 TCCTCTTATC
* *
64517583 TTTTTA -TTTTA TTTTTA TTTTTA CTTTTA TTTTTTA TTTTTC TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTT
64517629 GAAGACATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
5 5 0.14
6 25 0.71
7 5 0.14
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:64517610 original size:18 final size:19
Alignment explanation
Indices: 64517583--64517628 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
64517573 TCCTCTTATC
64517583 TTTTTA-TTTTA-TTTTTA
1 TTTTTACTTTTATTTTTTA
64517600 TTTTTACTTTTATTTTTTA
1 TTTTTACTTTTATTTTTTA
64517619 TTTTT-CTTTT
1 TTTTTACTTTT
64517629 GAAGACATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.22
18 10 0.37
19 11 0.41
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTTTACTTTTATTTTTTA
Found at i:64518925 original size:52 final size:47
Alignment explanation
Indices: 64518844--64519037 Score: 174
Period size: 47 Copynumber: 4.0 Consensus size: 47
64518834 TGAAATGTAA
* * * *
64518844 TTTCCGTATAAGACCATAGCTAGGCTATGGCTTCGGAGAAATGTGATATGTG
1 TTTCCGTATAAGACCATATCTGGGATATGGCATC-G-G---TGTGATATGTG
*
64518896 TTTCCGTATAAGACCATATCCGGGATATGGCATCGGTGTGATATGTG
1 TTTCCGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTG
* * * * *
64518943 CTACTGCATAAGACCATATCTGGGATATGGCATCAGTGTGATATGTG
1 TTTCCGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTG
* * ** * *
64518990 -ATCCGTGTAAGACCATGGCTGGGCTATGGCCTCGGTATGTGATATGTG
1 TTTCCGTATAAGACCATATCTGGGATATGGCATCGG--TGTGATATGTG
64519038 ACTATGTGCA
Statistics
Matches: 119, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
46 25 0.21
47 52 0.44
48 11 0.09
50 1 0.01
51 1 0.01
52 29 0.24
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (47 bp):
TTTCCGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTG
Found at i:64525876 original size:46 final size:43
Alignment explanation
Indices: 64525792--64526206 Score: 179
Period size: 37 Copynumber: 9.6 Consensus size: 43
64525782 TTTGAGTACT
* *
64525792 TCTGATCAAGTGATAAAGTGATAAGTGGT-AGCTTTAGCTACACTTA
1 TCTGATCAAGTGA-CAAGTGA-AAGTGATAAG--TTAGCTACACTTA
*
64525838 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAAGT-GAAAGTGATAAGT--TA------GCTACACTTA
* * *
64525890 TCTGATCAAGTGATAAAGTGATAAGTGAT-AGCTTCGGCTATACTTA
1 TCTGATCAAGTGA-CAAGTGA-AAGTGATAAG-TT-AGCTACACTTA
*
64525936 TCTGATCAAGTG---A-T-AAAGTGATAAG-T-GAT-CACTTA
1 TCTGATCAAGTGACAAGTGAAAGTGATAAGTTAGCTACACTTA
*
64525971 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAAGTG-AAAGTGATAAGT--TA------GCTACACTTA
*
64526023 TCTGATCAAGAGACAAAGTGATAAGTGAT-AGCTTTAGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGA-AAGTGATAAG--TTAGCTACACTTA
* * *
64526069 TCTGATCAAGAGAC-----AAAGTGATAAG-TGGCTGCACTTA
1 TCTGATCAAGTGACAAGTGAAAGTGATAAGTTAGCTACACTTA
* *
64526106 TCTGATCAA--GA-AA--CAAAGTGATAAG-TGGCTACACTTA
1 TCTGATCAAGTGACAAGTGAAAGTGATAAGTTAGCTACACTTA
* * *
64526143 TCTGATCAA--GA-AA--CAAAGTGAT-AGGTGGCTACACTTA
1 TCTGATCAAGTGACAAGTGAAAGTGATAAGTTAGCTACACTTA
*
64526180 TCTGATC-AGGGACAAGTGATAAGTGAT
1 TCTGATCAAGTGACAAGTGA-AAGTGAT
64526207 CATACGTAAG
Statistics
Matches: 307, Mismatches: 15, Indels: 98
0.73 0.04 0.23
Matches are distributed among these distances:
35 19 0.06
36 5 0.02
37 82 0.27
38 4 0.01
39 17 0.06
40 6 0.02
41 13 0.04
42 8 0.03
44 2 0.01
45 10 0.03
46 64 0.21
51 3 0.01
52 49 0.16
53 24 0.08
54 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (43 bp):
TCTGATCAAGTGACAAGTGAAAGTGATAAGTTAGCTACACTTA
Found at i:64525877 original size:52 final size:47
Alignment explanation
Indices: 64525858--64526095 Score: 266
Period size: 46 Copynumber: 5.3 Consensus size: 47
64525848 TGACAAGTGG
*
64525858 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTG-AT
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAAT
64525904 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTG-AT
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAAT
** **
64525950 AAAGTGATAAGTGATCA-CTT-ATCTGAT-C--AAGTGA-CAAGTG-A-
1 AAAGTGATAAGTGAT-AGCTTCGGCT-ATACTTATCTGATCAAGTGAAT
* *
64525991 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAG-AC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAAT
** * * *
64526037 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAG-AC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAAT
64526083 AAAGTGATAAGTG
1 AAAGTGATAAGTG
64526096 GCTGCACTTA
Statistics
Matches: 170, Mismatches: 13, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
40 1 0.01
41 20 0.12
42 10 0.06
43 4 0.02
44 4 0.02
45 9 0.05
46 121 0.71
47 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.29
Consensus pattern (47 bp):
AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAAT
Found at i:64525912 original size:98 final size:93
Alignment explanation
Indices: 64525792--64526095 Score: 349
Period size: 87 Copynumber: 3.3 Consensus size: 93
64525782 TTTGAGTACT
* ** *
64525792 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-A-T-
* *
64525857 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
63 -AAAGTGATAAGTGATAGCTT-AGCTATACTTA
64525890 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTG--ATAAA
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACATAAA
*
64525953 GTGATAAGTGATCA-CTTATCTGAT-C--A
66 GTGATAAGTGAT-AGCTTAGCT-ATACTTA
** *
64525979 AGTGA-CAAGTGA-AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--AAA
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACATAAA
*
64526040 GTGATAAGTGATAGCTTTAGCTACACTTA
66 GTGATAAGTGATAGC-TTAGCTATACTTA
* *
64526069 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTG
64526096 GCTGCACTTA
Statistics
Matches: 180, Mismatches: 15, Indels: 28
0.81 0.07 0.13
Matches are distributed among these distances:
86 1 0.01
87 60 0.33
88 13 0.07
89 4 0.02
90 4 0.02
91 9 0.05
92 32 0.18
93 1 0.01
94 1 0.01
95 1 0.01
98 54 0.30
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (93 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACATAAA
GTGATAAGTGATAGCTTAGCTATACTTA
Found at i:64525974 original size:35 final size:34
Alignment explanation
Indices: 64525931--64525998 Score: 109
Period size: 35 Copynumber: 2.0 Consensus size: 34
64525921 CTTCGGCTAT
*
64525931 ACTTATCTGATCAAGTGATAAAGTGATAAGTGATC
1 ACTTATCTGATCAAGTGA-AAAGTGAAAAGTGATC
*
64525966 ACTTATCTGATCAAGTGACAAGTGAAAAGTGAT
1 ACTTATCTGATCAAGTGAAAAGTGAAAAGTGAT
64525999 AAGTGATAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 13 0.42
35 18 0.58
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (34 bp):
ACTTATCTGATCAAGTGAAAAGTGAAAAGTGATC
Found at i:64526070 original size:133 final size:135
Alignment explanation
Indices: 64525832--64526115 Score: 464
Period size: 133 Copynumber: 2.1 Consensus size: 135
64525822 GCTTTAGCTA
*
64525832 CACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
1 CACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
* * * * * *
64525897 AAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGT
66 AAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
64525962 -GAT-
131 GGATG
*
64525965 CACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATC
1 CACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
*
64526030 AAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
66 AAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
*
64526095 GGCTG
131 GGATG
64526100 CACTTATCTGATCAAG
1 CACTTATCTGATCAAG
64526116 AAACAAAGTG
Statistics
Matches: 139, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
133 121 0.87
134 2 0.01
135 16 0.12
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.29
Consensus pattern (135 bp):
CACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
AAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
GGATG
Found at i:64526107 original size:37 final size:37
Alignment explanation
Indices: 64526059--64526204 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
64526049 GATAGCTTTA
*
64526059 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
64526096 GCTGCACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
64526133 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
64526170 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
64526205 ATCATACGTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 87 0.85
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:64527199 original size:41 final size:41
Alignment explanation
Indices: 64527153--64527233 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
64527143 TAAGAGACTT
64527153 AAACAAAATAAGATCTCTCACTA-ATTATCTGTTTGCTTTCC
1 AAACAAAATAAGATCTCTCAC-AGATTATCTGTTTGCTTTCC
64527194 AAACAAAATAAGATCTCTCACAGATTATCTGTTTGCTTTC
1 AAACAAAATAAGATCTCTCACAGATTATCTGTTTGCTTTC
64527234 AGCAATTGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 1 0.03
41 38 0.97
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.36
Consensus pattern (41 bp):
AAACAAAATAAGATCTCTCACAGATTATCTGTTTGCTTTCC
Found at i:64530721 original size:17 final size:17
Alignment explanation
Indices: 64530681--64530721 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
64530671 TAAAAATAAC
64530681 AATAAAAACAAAAGGAA
1 AATAAAAACAAAAGGAA
*
64530698 AAGAAAAAC-AAAGTGAA
1 AATAAAAACAAAAG-GAA
64530715 AATAAAA
1 AATAAAA
64530722 GGACTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.76, C:0.05, G:0.12, T:0.07
Consensus pattern (17 bp):
AATAAAAACAAAAGGAA
Found at i:64539115 original size:50 final size:49
Alignment explanation
Indices: 64538997--64539172 Score: 194
Period size: 50 Copynumber: 3.5 Consensus size: 49
64538987 CTGGTACGCA
* * **
64538997 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
64539046 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* * ** * *
64539096 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG--TCT-AATACACG
64539147 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
64539173 TGCGACCTCA
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 29 0.27
50 43 0.39
51 34 0.31
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:64539170 original size:101 final size:99
Alignment explanation
Indices: 64538997--64539183 Score: 268
Period size: 101 Copynumber: 1.9 Consensus size: 99
64538987 CTGGTACGCA
* *
64538997 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTGGTACACATAGTAGCCTGCACTTA
*
64539062 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * * *
64539096 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTTGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG--TCT-GGTACACATAGTAGCCTGCAC
*
64539160 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
64539184 AATAGATCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
98 4 0.05
99 30 0.39
100 2 0.03
101 41 0.53
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:64544494 original size:28 final size:28
Alignment explanation
Indices: 64544454--64544510 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
64544444 GCATTATTGT
64544454 TGTATTATTATCATACCAACTTACATGC
1 TGTATTATTATCATACCAACTTACATGC
64544482 TGTATTATTATCATACCAACTTACATGC
1 TGTATTATTATCATACCAACTTACATGC
64544510 T
1 T
64544511 TTCAACACCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (28 bp):
TGTATTATTATCATACCAACTTACATGC
Found at i:64544756 original size:143 final size:143
Alignment explanation
Indices: 64544498--64544926 Score: 831
Period size: 143 Copynumber: 3.0 Consensus size: 143
64544488 ATTATCATAC
*
64544498 CAACTTACATGCTTTCAACACCTCGGAAATTATAATAAATATATCAATTTTACGTTGAAACATGC
1 CAACTTACATGCTTTCAACACCTCGGAAATTATAATAAATATATCAATTTTACATTGAAACATGC
64544563 ATAAATTAATGCTTATTATACATATGAACTTACCTCGATACTAAAACGACCATTTTACCAACTTT
66 ATAAATTAATGCTTATTATACATATGAACTTACCTCGATACTAAAACGACCATTTTACCAACTTT
64544628 CCCAATTTTCTAT
131 CCCAATTTTCTAT
64544641 CAACTTACATGCTTTCAACACCTCGGAAATTATAATAAATATATCAATTTTACATTGAAACATGC
1 CAACTTACATGCTTTCAACACCTCGGAAATTATAATAAATATATCAATTTTACATTGAAACATGC
64544706 ATAAATTAATGCTTATTATACATATGAACTTACCTCGATACTAAAACGACCATTTTACCAACTTT
66 ATAAATTAATGCTTATTATACATATGAACTTACCTCGATACTAAAACGACCATTTTACCAACTTT
64544771 CCCAATTTTCTAT
131 CCCAATTTTCTAT
*
64544784 CAACTTACATGCTTTCAACTCCTCGGAAATTATAATAAATATATCAATTTTACATTGAAACATGC
1 CAACTTACATGCTTTCAACACCTCGGAAATTATAATAAATATATCAATTTTACATTGAAACATGC
64544849 ATAAATTAATGCTTATTATACATATGAACTTACCTCGATACTAAAACGACCATTTTACCAACTTT
66 ATAAATTAATGCTTATTATACATATGAACTTACCTCGATACTAAAACGACCATTTTACCAACTTT
*
64544914 CTCAATTTTCTAT
131 CCCAATTTTCTAT
64544927 TTTTCTCTCA
Statistics
Matches: 283, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 283 1.00
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (143 bp):
CAACTTACATGCTTTCAACACCTCGGAAATTATAATAAATATATCAATTTTACATTGAAACATGC
ATAAATTAATGCTTATTATACATATGAACTTACCTCGATACTAAAACGACCATTTTACCAACTTT
CCCAATTTTCTAT
Found at i:64570497 original size:21 final size:21
Alignment explanation
Indices: 64570457--64570504 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
64570447 TCATAAAATT
64570457 TAAAA-ATAAATAAATTATAA
1 TAAAATATAAATAAATTATAA
*
64570477 TACAAATATAAA-AATTTATAA
1 TA-AAATATAAATAAATTATAA
64570498 TAAAATA
1 TAAAATA
64570505 GATTAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 7 0.28
21 13 0.52
22 5 0.20
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (21 bp):
TAAAATATAAATAAATTATAA
Found at i:64570512 original size:21 final size:19
Alignment explanation
Indices: 64570459--64570515 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 19
64570449 ATAAAATTTA
64570459 AAAATAAATAAA-TTATAAT
1 AAAAT-AATAAATTTATAAT
*
64570478 ACAAATATAAAAATTTATAAT
1 A-AAATA-ATAAATTTATAAT
64570499 AAAATAGATTAAATTTA
1 AAAATA-A-TAAATTTA
64570516 ATTCAAACGA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 2 0.06
20 14 0.45
21 15 0.48
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATAATAAATTTATAAT
Found at i:64578515 original size:12 final size:11
Alignment explanation
Indices: 64578493--64578527 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
64578483 TGTGCAGTAT
64578493 AGAAAACAAAAA
1 AGAAAA-AAAAA
64578505 AGAAGAAAAAAA
1 AGAA-AAAAAAA
64578517 AGAAAAAAAAA
1 AGAAAAAAAAA
64578528 GAGGGATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.32
12 13 0.59
13 2 0.09
ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:64581113 original size:18 final size:20
Alignment explanation
Indices: 64581092--64581132 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
64581082 AAAAATTTAA
64581092 AAATTAGA-C-CATAAAAAT
1 AAATTAGATCACATAAAAAT
*
64581110 AAATTAGATCACATATAAAT
1 AAATTAGATCACATAAAAAT
64581130 AAA
1 AAA
64581133 CTTTATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 1 0.05
20 11 0.55
ACGTcount: A:0.61, C:0.10, G:0.05, T:0.24
Consensus pattern (20 bp):
AAATTAGATCACATAAAAAT
Found at i:64583768 original size:40 final size:40
Alignment explanation
Indices: 64583692--64583774 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 40
64583682 ATTCGTTTTA
* **
64583692 TCAGAAATTTTACAGTTCAATGCAGTATACGTAACAATAT
1 TCAGAAATTTCACAGTTCAATGCAGTATACAAAACAATAT
* * * *
64583732 TCAGTAATTTCACAGTTCAATTCGGTATTCAAAACAATAT
1 TCAGAAATTTCACAGTTCAATGCAGTATACAAAACAATAT
64583772 TCA
1 TCA
64583775 ATATCTCATA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.34
Consensus pattern (40 bp):
TCAGAAATTTCACAGTTCAATGCAGTATACAAAACAATAT
Found at i:64590620 original size:17 final size:17
Alignment explanation
Indices: 64590598--64590634 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
64590588 TGAATTTTGG
64590598 ATTGGTAATTTTATTGA
1 ATTGGTAATTTTATTGA
64590615 ATTGGTAATTTTATTGA
1 ATTGGTAATTTTATTGA
64590632 ATT
1 ATT
64590635 AGTGACTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.54
Consensus pattern (17 bp):
ATTGGTAATTTTATTGA
Found at i:64599355 original size:40 final size:40
Alignment explanation
Indices: 64599309--64599540 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
64599299 TATAACCTCA
* * * *
64599309 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACT
* * *
64599349 TGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACT
* *
64599389 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
*
64599429 AGCACAAATGCCTTCTGGTCTTAACCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
*
64599469 AGCATAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
* *
64599509 AGCACAAATGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATA
64599541 TCATTCAAAT
Statistics
Matches: 176, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 172 0.98
41 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
Found at i:64614393 original size:28 final size:28
Alignment explanation
Indices: 64614353--64614410 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
64614343 ACAGGCTCCC
*
64614353 CATCAAAGAAGAATGCAAGCCGGTTCAG
1 CATCAAAGAAGAATGCAAGCCAGTTCAG
64614381 CATCAAAGAAGAATGCAAGCCAGTTCAG
1 CATCAAAGAAGAATGCAAGCCAGTTCAG
64614409 CA
1 CA
64614411 AAAGCTTCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.14
Consensus pattern (28 bp):
CATCAAAGAAGAATGCAAGCCAGTTCAG
Found at i:64633956 original size:21 final size:19
Alignment explanation
Indices: 64633918--64633956 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
64633908 TAATATTTCT
*
64633918 ATAATATGAACATTAAAAC
1 ATAATATAAACATTAAAAC
64633937 ATAATATAATACATTTAAAA
1 ATAATATAA-ACA-TTAAAA
64633957 TGCCTAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.31
Consensus pattern (19 bp):
ATAATATAAACATTAAAAC
Found at i:64636105 original size:11 final size:11
Alignment explanation
Indices: 64636097--64636171 Score: 93
Period size: 11 Copynumber: 6.9 Consensus size: 11
64636087 AGTGATTATC
64636097 TTAATATTAAAT
1 TTAATATT-AAT
64636109 TTAAT-TTAAT
1 TTAATATTAAT
64636119 TTAAT-TTAAT
1 TTAATATTAAT
*
64636129 TTAATATTAAC
1 TTAATATTAAT
*
64636140 TTAATATTTAT
1 TTAATATTAAT
64636151 ATT-ATATTAAT
1 -TTAATATTAAT
64636162 TTAATATTAA
1 TTAATATTAA
64636172 AGTGATTAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
10 20 0.36
11 29 0.52
12 7 0.12
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (11 bp):
TTAATATTAAT
Found at i:64636116 original size:5 final size:5
Alignment explanation
Indices: 64636106--64636171 Score: 62
Period size: 5 Copynumber: 12.4 Consensus size: 5
64636096 CTTAATATTA
* *
64636106 AATTT AATTT AATTT AATTT AATTT AATATT AACTT AATATT TATATT
1 AATTT AATTT AATTT AATTT AATTT AAT-TT AATTT AAT-TT AAT-TT
64636154 -ATATT AATTT AATATT AA
1 AAT-TT AATTT AAT-TT AA
64636172 AGTGATTAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
5 37 0.69
6 17 0.31
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (5 bp):
AATTT
Found at i:64638220 original size:2 final size:2
Alignment explanation
Indices: 64638213--64638237 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
64638203 TAACTAAGTA
64638213 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
64638238 GTGTGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64639178 original size:22 final size:22
Alignment explanation
Indices: 64639150--64639210 Score: 97
Period size: 22 Copynumber: 2.8 Consensus size: 22
64639140 TATTAGTATA
64639150 TTAGTGCTCTCTGTTTAGCACAT
1 TTAGTGCTCTCTGTTTAGCAC-T
*
64639173 TT-GTGCTCTCTGTATAGCACT
1 TTAGTGCTCTCTGTTTAGCACT
64639194 TTAGTGCTCTCTGTTTA
1 TTAGTGCTCTCTGTTTA
64639211 ATAGTGCATA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 30 0.86
23 2 0.06
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (22 bp):
TTAGTGCTCTCTGTTTAGCACT
Found at i:64640257 original size:109 final size:106
Alignment explanation
Indices: 64640124--64640404 Score: 321
Period size: 106 Copynumber: 2.6 Consensus size: 106
64640114 GTCTCTACAA
* * * * *
64640124 ACTGAGCTATAGTGTCGCACACATGTGTCCCCACTAACTAAAGGTAGAGACACAATGGATACATC
1 ACTGAGCTATAGAGTCGCATACATGCGTCTCCACTAACTAAAGGTAGAGACACAATGGATGCATC
* * *
64640189 TCAATTGATATGCTTA-TAAAGATGCATGTCTCGCGTCACCATAG
66 TCAACTGACA--C--AGTAAAGATGCATGTCTCGCATCACCATAG
* * ** * *
64640233 ACTGGGCTATAGCGTCGCATACATGCGTCTTAACTAACTAAAGGTAGAGACACAGTGGATGCTTC
1 ACTGAGCTATAGAGTCGCATACATGCGTCTCCACTAACTAAAGGTAGAGACACAATGGATGCATC
* *
64640298 TCTACTGACACAGTGAAGATGCATGTCTCGCATCACCATAG
66 TCAACTGACACAGTAAAGATGCATGTCTCGCATCACCATAG
* * * * * *
64640339 ATTGAGCTATAGAGTCACGTAAATGCGTCTCCACTAACTAGATGTAGAGACACAATGGATGCATC
1 ACTGAGCTATAGAGTCGCATACATGCGTCTCCACTAACTAAAGGTAGAGACACAATGGATGCATC
64640404 T
66 T
64640405 TCATTGGCTG
Statistics
Matches: 144, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
105 1 0.01
106 80 0.56
107 1 0.01
109 62 0.43
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (106 bp):
ACTGAGCTATAGAGTCGCATACATGCGTCTCCACTAACTAAAGGTAGAGACACAATGGATGCATC
TCAACTGACACAGTAAAGATGCATGTCTCGCATCACCATAG
Found at i:64641894 original size:16 final size:17
Alignment explanation
Indices: 64641862--64641894 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
64641852 ATTGTGTTCC
*
64641862 TTTTTATTATAATAAAG
1 TTTTAATTATAATAAAG
64641879 TTTTAATTATAA-AAAG
1 TTTTAATTATAATAAAG
64641895 ATTAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (17 bp):
TTTTAATTATAATAAAG
Found at i:64650694 original size:25 final size:24
Alignment explanation
Indices: 64650657--64650707 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
64650647 TTGTTTAAAC
64650657 AACACTTATGACAACAAGTTAGGAA
1 AACACTTATGACAACAAGTT-GGAA
64650682 AACACTTGA-GACAACAAGTTGGAA
1 AACACTT-ATGACAACAAGTTGGAA
64650706 AA
1 AA
64650708 TTTAAAGTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 6 0.24
25 18 0.72
26 1 0.04
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.18
Consensus pattern (24 bp):
AACACTTATGACAACAAGTTGGAA
Found at i:64652075 original size:46 final size:47
Alignment explanation
Indices: 64652022--64652232 Score: 275
Period size: 46 Copynumber: 4.6 Consensus size: 47
64652012 TGTCATAGTG
*
64652022 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATGTCATGTTGCCATGGTA
* * * **
64652068 TCTTTCAACCATGGTCTTATTAATTTCCCCGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATGTCATGTTGCCATGGTA
*
64652115 TCTTTCAACCATGGTCTTATTCA-TTTCATGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATGTCATGTTGCCATGGTA
* * * * *
64652161 TCTTTCAACCATGGTCTTACACA-TTTCGTATCATGTTGTCGTGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATGTCATGTTGCCATGGTA
* *
64652207 TCTTTCAACCATGATCTTACACATTT
1 TCTTTCAACCATGGTCTTACTCATTT
64652233 CATTTCAGAA
Statistics
Matches: 147, Mismatches: 16, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
46 106 0.72
47 41 0.28
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (47 bp):
TCTTTCAACCATGGTCTTACTCATTTTCATGTCATGTTGCCATGGTA
Found at i:64652187 original size:93 final size:92
Alignment explanation
Indices: 64652022--64652235 Score: 297
Period size: 93 Copynumber: 2.3 Consensus size: 92
64652012 TGTCATAGTG
*
64652022 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAACCATGGTCTT
1 TCTTTCAACCATGGTCTTACTCA-TTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTT
* *
64652086 ATTAATTTCCCCGTCATGTTGCCATGGTA
65 ATCAATTT-CCCATCATGTTGCCATGGTA
*
64652115 TCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * *
64652180 -CACATTTCGTATCATGTTGTCGTGGTA
66 TCA-ATTTCCCATCATGTTGCCATGGTA
* *
64652207 TCTTTCAACCATGATCTTACACATTTCAT
1 TCTTTCAACCATGGTCTTACTCATTTCAT
64652236 TTCAGAAAGC
Statistics
Matches: 108, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
92 46 0.43
93 62 0.57
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (92 bp):
TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
TCAATTTCCCATCATGTTGCCATGGTA
Found at i:64656124 original size:16 final size:16
Alignment explanation
Indices: 64656103--64656137 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
64656093 TTAAACACCT
64656103 GAGGAGGAACTTAGAA
1 GAGGAGGAACTTAGAA
64656119 GAGGAGGAACTTAGAA
1 GAGGAGGAACTTAGAA
64656135 GAG
1 GAG
64656138 ACACACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.06, G:0.40, T:0.11
Consensus pattern (16 bp):
GAGGAGGAACTTAGAA
Found at i:64657324 original size:31 final size:31
Alignment explanation
Indices: 64657289--64657382 Score: 88
Period size: 31 Copynumber: 3.1 Consensus size: 31
64657279 ATGATGCTAG
64657289 AGATATTTTGA-TATTTTATAATTATTTAATT
1 AGATATTTT-ATTATTTTATAATTATTTAATT
** *
64657320 AGATA-AATATTATTTTATTAA-TATTTTAATA
1 AGATATTTTATTATTTTA-TAATTA-TTTAATT
* *
64657351 AGATATTTTATTATTTT-TTATTATTTTATT
1 AGATATTTTATTATTTTATAATTATTTAATT
64657381 AG
1 AG
64657383 TATAAAAAGA
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
29 1 0.02
30 19 0.38
31 21 0.42
32 9 0.18
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (31 bp):
AGATATTTTATTATTTTATAATTATTTAATT
Found at i:64663253 original size:25 final size:25
Alignment explanation
Indices: 64663224--64663299 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 25
64663214 AGACCATAGT
64663224 TGAAAAATATCATGGCAACATGATA
1 TGAAAAATATCATGGCAACATGATA
* * * * *
64663249 TGAAATATGT-A-AG-ACCATGGT-
1 TGAAAAATATCATGGCAACATGATA
* *
64663270 TGAAAGATACCATGGCAACATGATA
1 TGAAAAATATCATGGCAACATGATA
64663295 TGAAA
1 TGAAA
64663300 TGTGTAAGAC
Statistics
Matches: 36, Mismatches: 11, Indels: 8
0.65 0.20 0.15
Matches are distributed among these distances:
21 7 0.19
22 7 0.19
23 2 0.06
24 7 0.19
25 13 0.36
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.24
Consensus pattern (25 bp):
TGAAAAATATCATGGCAACATGATA
Found at i:64663391 original size:51 final size:46
Alignment explanation
Indices: 64663202--64663434 Score: 263
Period size: 46 Copynumber: 5.0 Consensus size: 46
64663192 GCTTTCTGAA
* * * *
64663202 ATGAAATGAGTAAGACCATAGTTGAAAAATATCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
64663248 ATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGA-GTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * **
64663294 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAATGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
64663340 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACACAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGG-----CAACATGAC
* * * *
64663391 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
64663435 TCGAAGATAA
Statistics
Matches: 161, Mismatches: 18, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
45 1 0.01
46 122 0.76
50 1 0.01
51 37 0.23
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:64664450 original size:11 final size:11
Alignment explanation
Indices: 64664436--64664476 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
64664426 TGTTTTCTCC
64664436 CTATTTTGCTA
1 CTATTTTGCTA
*
64664447 CTATTTTACTA
1 CTATTTTGCTA
* *
64664458 TTATGTTGCTA
1 CTATTTTGCTA
64664469 CTATTTTG
1 CTATTTTG
64664477 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:64666113 original size:22 final size:23
Alignment explanation
Indices: 64666080--64666124 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
64666070 ATTTCATGCA
64666080 CGCATATCACTTTTACAC-CTTT
1 CGCATATCACTTTTACACTCTTT
64666102 CGCATAAT-ACTTTTACACTCTTT
1 CGCAT-ATCACTTTTACACTCTTT
64666125 ACAATTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.24, C:0.29, G:0.04, T:0.42
Consensus pattern (23 bp):
CGCATATCACTTTTACACTCTTT
Found at i:64667317 original size:46 final size:46
Alignment explanation
Indices: 64667252--64667523 Score: 323
Period size: 46 Copynumber: 5.9 Consensus size: 46
64667242 TTATCTTAGA
* * * * * * *
64667252 CATGATGCCATAGTGTCTTTAAACTATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* ** * **
64667298 CATGTTGCCATGGTATCTTTCAACCATGATCTTATTCATTTCCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT-TCTAT
*
64667345 CATGTTGCCGTGGTATCTTTCAACCATGGTCTTACACA-TTTCGTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
**
64667391 CATGTTGCCATAATATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
* * *
64667437 CATGTTTCCATGGTATCTTTCAACCATAGTCTTACACATTTTGTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
*
64667483 CATGTTGCCATGGTATCTTTCAACCATGGTTTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
64667524 CATTTTAGAA
Statistics
Matches: 195, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
45 1 0.01
46 154 0.79
47 40 0.21
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
Found at i:64675771 original size:25 final size:24
Alignment explanation
Indices: 64675710--64675788 Score: 68
Period size: 27 Copynumber: 3.0 Consensus size: 24
64675700 ATATACGAAT
*
64675710 AATTTTAAAGAAAATATATATAAA
1 AATTTTAAAGAAAATATACATAAA
*
64675734 AATAAATTAAAAGAAAATATACATTAAA
1 AAT---TTTAAAGAAAATATACA-TAAA
* *
64675762 GATTTTAAAGAAACTATATAAATAAA
1 AATTTTAAAGAAA--ATATACATAAA
64675788 A
1 A
64675789 TACTATAGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
24 3 0.07
25 9 0.21
26 4 0.09
27 21 0.49
28 6 0.14
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (24 bp):
AATTTTAAAGAAAATATACATAAA
Found at i:64676061 original size:21 final size:22
Alignment explanation
Indices: 64676032--64676072 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
64676022 AAAAAAAACA
64676032 AAACAATATAGATA-ATATACC
1 AAACAATATAGATATATATACC
* *
64676053 AAACCATATATATATATATA
1 AAACAATATAGATATATATA
64676073 TATATATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.29
Consensus pattern (22 bp):
AAACAATATAGATATATATACC
Found at i:64677638 original size:45 final size:45
Alignment explanation
Indices: 64677505--64677626 Score: 183
Period size: 45 Copynumber: 2.7 Consensus size: 45
64677495 GGTGGCTAAA
* *
64677505 ATCTGCTCCATAGCCGATACATGGAAATAAAACTCGCCATCTTT-G
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCAT-TTTCG
* *
64677550 ATCTGTTTCATAGCCGATACATGGAGATAAGACTCGCCATTTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCG
*
64677595 ATCTGCTCCATAGCAGATACATGGAGATAAGA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA
64677627 TCTGTAATTT
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 3 0.04
45 66 0.96
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCG
Found at i:64677645 original size:45 final size:45
Alignment explanation
Indices: 64677506--64677646 Score: 162
Period size: 45 Copynumber: 3.1 Consensus size: 45
64677496 GTGGCTAAAA
* * *
64677506 TCTGCTCCATAGCCGATACATGGAAATAAAACTCGCCATCTTTGA-
1 TCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCAT-TTTCAG
* *
64677551 TCTGTTTCATAGCCGATACATGGAGATAAGACTCGCCATTTTC-G
1 TCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCAG
* **
64677595 ATCTGCTCCATAGCAGATACATGGAGATAAGA-TCTGTAATTTTCAG
1 -TCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCCATTTTCAG
64677641 TCTGCT
1 TCTGCT
64677647 TACTGCAACT
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
44 5 0.06
45 76 0.93
46 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (45 bp):
TCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCAG
Found at i:64677782 original size:177 final size:177
Alignment explanation
Indices: 64677558--64678170 Score: 985
Period size: 177 Copynumber: 3.5 Consensus size: 177
64677548 TGATCTGTTT
*
64677558 CATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCAGATACATGGAGAT
1 CATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGAT
* *
64677623 AAGATCTGTAATTTTCAGTCTGCTTACTGCAACTTCAGGAAGATAAGACTTGTATCTTCAATCTG
66 AAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTG
* * *
64677688 CTCCTCTGCAACTTTAGAGAGATAAGGATGGTGGCTAAAATCTACTC
131 CTCCACTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTC
* **
64677735 CATAGCCGATACATGAAGATAAGACTCGCCATTTTTTATCTGCTCCATAGCCGATACATGGAGAT
1 CATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGAT
* ** *
64677800 AAGATCTGTAATTTTTAGTCTGCTTCCTATAACTTTAGGAAGATAAGACTTGTATCTTCAACCTG
66 AAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTG
64677865 CTCCACTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTC
131 CTCCACTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTC
* * * *
64677912 CATAGCCAATACGTGGAGATAAGACTTGCCATTTTCGATCTACTCCATAGCCGATACATGGAGAT
1 CATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGAT
* *
64677977 AAGATCTGTAATTTTTAGTCTACTTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTG
66 AAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTG
*
64678042 CTCCACTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATATACTC
131 CTCCACTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTC
* ** * *
64678089 CATAGCTGATACATGGAGATAAGACTCATC-GTTTCTGATCTGCTCCATAGTCGATACATGGAGA
1 CATAGCCGATACATGGAGATAAGACTCGCCATTTTC-GATCTGCTCCATAGCCGATACATGGAGA
64678153 TAAGATCTGTAATTTTCA
65 TAAGATCTGTAATTTTCA
64678171 CCAATGTCGC
Statistics
Matches: 400, Mismatches: 35, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
176 4 0.01
177 396 0.99
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (177 bp):
CATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGAT
AAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACCTG
CTCCACTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTC
Found at i:64677814 original size:45 final size:44
Alignment explanation
Indices: 64677727--64677823 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 44
64677717 GGTGGCTAAA
* *
64677727 ATCTACTCCATAGCCGATACATGAAGATAAGACTCGCCATTTTTT
1 ATCTGCTCCATAGCCGATACATGAAGATAAGACTCG-CAATTTTT
* *
64677772 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCTGTAATTTTT
1 ATCTGCTCCATAGCCGATACATGAAGATAAGACTC-GCAATTTTT
64677816 AGTCTGCT
1 A-TCTGCT
64677824 TCCTATAACT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 9 0.20
45 37 0.80
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (44 bp):
ATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCAATTTTT
Found at i:64682828 original size:15 final size:16
Alignment explanation
Indices: 64682802--64682832 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
64682792 TAATGCACAT
64682802 AATGCGATGAAATGAA
1 AATGCGATGAAATGAA
64682818 AATGC-ATGAAATGAA
1 AATGCGATGAAATGAA
64682833 CGCAAAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.06, G:0.23, T:0.19
Consensus pattern (16 bp):
AATGCGATGAAATGAA
Found at i:64686406 original size:11 final size:11
Alignment explanation
Indices: 64686390--64686421 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
64686380 GATACGAATC
64686390 AAAAAAAAAAG
1 AAAAAAAAAAG
*
64686401 AAAAAAAAGAG
1 AAAAAAAAAAG
64686412 AAAAAAAAAA
1 AAAAAAAAAA
64686422 ACGTAATACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:64686669 original size:13 final size:13
Alignment explanation
Indices: 64686651--64686675 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64686641 ACATATCTAT
64686651 ATGAAAATAATAA
1 ATGAAAATAATAA
64686664 ATGAAAATAATA
1 ATGAAAATAATA
64686676 TATATACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
ATGAAAATAATAA
Found at i:64687976 original size:36 final size:36
Alignment explanation
Indices: 64687930--64688008 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
64687920 ACTTCACAAC
* * *
64687930 TTAGCCGTTCCTTCTATTTCTTCTTTCTGTTTTAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
*
64687966 TTAGCTGTTCCTTCTGTTTCTTCCTTCTGTTTCAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
64688002 TTAGCTG
1 TTAGCTG
64688009 CTTCACAACA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.08, C:0.23, G:0.14, T:0.56
Consensus pattern (36 bp):
TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
Found at i:64687991 original size:13 final size:13
Alignment explanation
Indices: 64687973--64687998 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64687963 AGTTTAGCTG
64687973 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
64687986 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
64687999 AGTTTAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCCTTCTGTTTC
Found at i:64689980 original size:11 final size:11
Alignment explanation
Indices: 64689964--64689989 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
64689954 GTCGCCTCTT
64689964 CCTTCGTTCTA
1 CCTTCGTTCTA
64689975 CCTTCGTTCTA
1 CCTTCGTTCTA
64689986 CCTT
1 CCTT
64689990 TGCCTCCCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.38, G:0.08, T:0.46
Consensus pattern (11 bp):
CCTTCGTTCTA
Found at i:64693017 original size:18 final size:17
Alignment explanation
Indices: 64692989--64693023 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
64692979 ATTATTAAGA
*
64692989 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
64693006 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
64693024 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:64693137 original size:18 final size:17
Alignment explanation
Indices: 64693109--64693143 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
64693099 ATTATTAAGA
*
64693109 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
64693126 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
64693144 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:64693373 original size:44 final size:45
Alignment explanation
Indices: 64693308--64693393 Score: 120
Period size: 44 Copynumber: 1.9 Consensus size: 45
64693298 ACCTCTATTC
* *
64693308 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCATTA
***
64693352 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCA
64693394 ATATACCTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 19 0.53
45 17 0.47
ACGTcount: A:0.36, C:0.29, G:0.07, T:0.28
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCATTA
Found at i:64693403 original size:16 final size:16
Alignment explanation
Indices: 64693379--64693447 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
64693369 GATTAGCTAT
64693379 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
64693395 TATACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
64693412 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
64693428 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
64693444 TACA
1 TACA
64693448 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 33 0.69
17 15 0.31
ACGTcount: A:0.36, C:0.36, G:0.01, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:64693421 original size:33 final size:32
Alignment explanation
Indices: 64693379--64693447 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
64693369 GATTAGCTAT
*
64693379 TACACCTCTAATCCAATATACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
64693412 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
64693444 TACA
1 TACA
64693448 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 8 0.24
33 26 0.76
ACGTcount: A:0.36, C:0.36, G:0.01, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:64694419 original size:29 final size:31
Alignment explanation
Indices: 64694362--64694424 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 31
64694352 TAAATAAATT
***
64694362 TTTTTACATAATTTAATAATTATTTTATAAA
1 TTTTTACATAATTTAATAATTAAAATATAAA
64694393 TTTTTA-A-AATTTAATAATTAAAATATAAA
1 TTTTTACATAATTTAATAATTAAAATATAAA
64694422 TTT
1 TTT
64694425 ACTAATAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 22 0.76
30 1 0.03
31 6 0.21
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (31 bp):
TTTTTACATAATTTAATAATTAAAATATAAA
Found at i:64696708 original size:43 final size:43
Alignment explanation
Indices: 64696660--64696745 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
64696650 AATTAATTAG
64696660 ATTAAATAAATTAATTTCTTAACCTC-ATTCTAATTCCATTAAA
1 ATTAAATAAATTAATTTCTTAACC-CAATTCTAATTCCATTAAA
64696703 ATTAAATAAATTAATTTCTTAACCCAATTCTAATTCCATTAAA
1 ATTAAATAAATTAATTTCTTAACCCAATTCTAATTCCATTAAA
64696746 GTAATAACAA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
42 1 0.02
43 41 0.98
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (43 bp):
ATTAAATAAATTAATTTCTTAACCCAATTCTAATTCCATTAAA
Found at i:64716855 original size:30 final size:30
Alignment explanation
Indices: 64716819--64716879 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
64716809 TATATGTAAA
64716819 TTATTA-TATATATTATATCATTTTTATTAT
1 TTATTATTATATATTATATCA-TTTTATTAT
* *
64716849 TTATTATTTTATTTTATATCATTTTATTAT
1 TTATTATTATATATTATATCATTTTATTAT
64716879 T
1 T
64716880 AACTATTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 16 0.57
31 12 0.43
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (30 bp):
TTATTATTATATATTATATCATTTTATTAT
Found at i:64716860 original size:15 final size:15
Alignment explanation
Indices: 64716840--64716892 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
64716830 ATTATATCAT
64716840 TTTTATTATTTATTA
1 TTTTATTATTTATTA
*
64716855 TTTTATT-TTATATCA
1 TTTTATTATT-TATTA
* *
64716870 TTTTATTATTAACTA
1 TTTTATTATTTATTA
64716885 -TTTATTAT
1 TTTTATTAT
64716893 GTATAATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
14 10 0.31
15 20 0.62
16 2 0.06
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTATTATTTATTA
Found at i:64722060 original size:87 final size:89
Alignment explanation
Indices: 64721860--64722060 Score: 207
Period size: 87 Copynumber: 2.3 Consensus size: 89
64721850 GGCATCTCCA
* * * * *
64721860 TATTTGACGGAGAGCAGATCGAAAACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTA
1 TATTT-ACAGAGAGCAAATCGAAGACATAACAGATCTAACCTTCGGATGTTTACACATCGAAGTA
*
64721925 GATCCAAGATGATTTGGTATCCTTG
65 GATCCAAGATGATTTGGGATCCTTG
* * * * *
64721950 TGTTTACA-AGGGGCATATCGAAGACATAACAGATCTGACCTTCAGG-TGTTTACGC-T-GAAGT
1 TATTTACAGA-GAGCAAATCGAAGACATAACAGATCTAACCTTC-GGATGTTTACACATCGAAGT
64722011 AGATCCAAGATGATTTGGGAT-CTCTG
64 AGATCCAAGATGATTTGGGATCCT-TG
*
64722037 TATTGT-CAGAGAGCAAATTGAAGA
1 TATT-TACAGAGAGCAAATCGAAGA
64722061 AACAGATTTG
Statistics
Matches: 92, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
86 2 0.02
87 43 0.47
88 4 0.04
89 37 0.40
90 6 0.07
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (89 bp):
TATTTACAGAGAGCAAATCGAAGACATAACAGATCTAACCTTCGGATGTTTACACATCGAAGTAG
ATCCAAGATGATTTGGGATCCTTG
Found at i:64722152 original size:220 final size:220
Alignment explanation
Indices: 64721754--64722193 Score: 664
Period size: 220 Copynumber: 2.0 Consensus size: 220
64721744 CAGGCCAAAG
*
64721754 CATAGCAGATCTGACCCTCAGGTGTTTACGCTGAAGCAGATCCAAGATGATTTGACATCTCTGTA
1 CATAACAGATCTGACCCTCAGGTGTTTACGCTGAAGCAGATCCAAGATGATTTGACATCTCTGTA
**
64721819 TTGTCAGAAAGAAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAA
66 TTGTCAGAAAGAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAA
* * * ** * *
64721884 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGTATCCTT
131 ACATAACAGATCTAACCTTCAGATGTTTTCACATCAAAACAAATCCAAGATGATTTGGCATCCTT
* *
64721949 GTGTTTACAAGGGGCATATCGAAGA
196 GTGTTTACAAGGAGCAGATCGAAGA
* * **
64721974 CATAACAGATCTGACCTTCAGGTGTTTACGCTGAAGTAGATCCAAGATGATTTGGGATCTCTGTA
1 CATAACAGATCTGACCCTCAGGTGTTTACGCTGAAGCAGATCCAAGATGATTTGACATCTCTGTA
* * * * * *
64722039 TTGTCAGAGAGCAAATTGAAGAAACAGATTTGGCATCTCCATATTCAATGGAGGGCAGATCGAAG
66 TTGTCAGAAAGAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAA
**
64722104 ACATAACAGATCTAACCTTCAGATGTTTTTGCATCAAAACAAATCCAAGATGATTTGGCATCCTT
131 ACATAACAGATCTAACCTTCAGATGTTTTCACATCAAAACAAATCCAAGATGATTTGGCATCCTT
64722169 GTGTTTACAAGGAGCAGATCGAAGA
196 GTGTTTACAAGGAGCAGATCGAAGA
64722194 TAGCAGATTT
Statistics
Matches: 196, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
220 196 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (220 bp):
CATAACAGATCTGACCCTCAGGTGTTTACGCTGAAGCAGATCCAAGATGATTTGACATCTCTGTA
TTGTCAGAAAGAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAA
ACATAACAGATCTAACCTTCAGATGTTTTCACATCAAAACAAATCCAAGATGATTTGGCATCCTT
GTGTTTACAAGGAGCAGATCGAAGA
Found at i:64722250 original size:41 final size:41
Alignment explanation
Indices: 64722180--64722442 Score: 400
Period size: 41 Copynumber: 6.3 Consensus size: 41
64722170 TGTTTACAAG
*
64722180 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAA-A-A-TAGATTTGGCGTCTCTGTATTGTCAGA
64722224 GAGCAGATCGAAAATAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAAATAGATTTGGCGTCTCTGTATTGTCAGA
64722265 GAGCAGATCGAAAATAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAAATAGATTTGGCGTCTCTGTATTGTCAGA
**
64722306 GAGCAGATCGAAAATAGATTTGTTGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAAATAGATTTGGCGTCTCTGTATTGTCAGA
**
64722347 GAGCAGATCGAAAATAGATTTGTTGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAAATAGATTTGGCGTCTCTGTATTGTCAGA
* * * *
64722388 GAGCAGATTGAAGATGAAGATTTGGTGTCTCTGTATTGCCAGA
1 GAGCAGATCGAAAAT--AGATTTGGCGTCTCTGTATTGTCAGA
64722431 GAGCAGATCGAA
1 GAGCAGATCGAA
64722443 GATAACAGAT
Statistics
Matches: 209, Mismatches: 8, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
41 160 0.77
42 1 0.00
43 36 0.17
44 12 0.06
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (41 bp):
GAGCAGATCGAAAATAGATTTGGCGTCTCTGTATTGTCAGA
Found at i:64723603 original size:18 final size:18
Alignment explanation
Indices: 64723577--64723699 Score: 66
Period size: 18 Copynumber: 6.8 Consensus size: 18
64723567 ATGCGTTTCT
*
64723577 TATAAATTTTATTATATA
1 TATATATTTTATTATATA
64723595 TATATATTTTACTT-TATA
1 TATATATTTTA-TTATATA
*
64723613 -AT-TCATTTTATTATATT
1 TATAT-ATTTTATTATATA
*
64723630 TATATATGTAAATTAATATATA
1 TATATAT-T---TTATTATATA
64723652 TTATATCATTTTTATTAT-T-
1 -TATAT-A-TTTTATTATATA
64723671 TAT-TATTTTATT-T-TA
1 TATATATTTTATTATATA
*
64723686 TAT-CATTTTATTAT
1 TATATATTTTATTAT
64723700 TAACTATTTA
Statistics
Matches: 85, Mismatches: 6, Indels: 30
0.70 0.05 0.25
Matches are distributed among these distances:
14 2 0.02
15 18 0.21
16 5 0.06
17 12 0.14
18 21 0.25
19 4 0.05
20 1 0.01
21 6 0.07
22 8 0.09
23 5 0.06
24 2 0.02
25 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (18 bp):
TATATATTTTATTATATA
Found at i:64723681 original size:15 final size:15
Alignment explanation
Indices: 64723661--64723713 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
64723651 ATTATATCAT
64723661 TTTTATTATTTATTA
1 TTTTATTATTTATTA
*
64723676 TTTTATT-TTATATCA
1 TTTTATTATT-TATTA
* *
64723691 TTTTATTATTAACTA
1 TTTTATTATTTATTA
64723706 -TTTATTAT
1 TTTTATTAT
64723714 GTATAATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
14 10 0.31
15 20 0.62
16 2 0.06
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTATTATTTATTA
Found at i:64724899 original size:14 final size:14
Alignment explanation
Indices: 64724880--64724919 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
64724870 TTTTTTAAAG
64724880 TCGAACCCCGTTTT
1 TCGAACCCCGTTTT
64724894 TCGAACCCCGTTTT
1 TCGAACCCCGTTTT
*
64724908 TCAAACCCCGTT
1 TCGAACCCCGTT
64724920 AATAAAAGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.17, C:0.38, G:0.12, T:0.33
Consensus pattern (14 bp):
TCGAACCCCGTTTT
Found at i:64726400 original size:91 final size:91
Alignment explanation
Indices: 64726245--64726419 Score: 314
Period size: 91 Copynumber: 1.9 Consensus size: 91
64726235 TGGATCAATA
* * *
64726245 CTCTAGAAAAATTAAATCAAGAATTAAGCACACATAATTGGGAACAAGAAACTAAGTATTTATTA
1 CTCTAGAAAAATTAAACCAAGAATGAAGCACACATAATTGAGAACAAGAAACTAAGTATTTATTA
*
64726310 CGTAAAATAAAAATCAAATCACAGAG
66 CATAAAATAAAAATCAAATCACAGAG
64726336 CTCTAGAAAAATTAAACCAAGAATGAAGCACACATAATTGAGAACAAGAAACTAAGTATTTATTA
1 CTCTAGAAAAATTAAACCAAGAATGAAGCACACATAATTGAGAACAAGAAACTAAGTATTTATTA
64726401 CATAAAATAAAAATCAAAT
66 CATAAAATAAAAATCAAAT
64726420 GACAAAATTC
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 80 1.00
ACGTcount: A:0.53, C:0.13, G:0.11, T:0.23
Consensus pattern (91 bp):
CTCTAGAAAAATTAAACCAAGAATGAAGCACACATAATTGAGAACAAGAAACTAAGTATTTATTA
CATAAAATAAAAATCAAATCACAGAG
Found at i:64743388 original size:15 final size:15
Alignment explanation
Indices: 64743365--64743394 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64743355 ATGAAAAGTG
*
64743365 CTTCTTCCTCTTCCT
1 CTTCCTCCTCTTCCT
64743380 CTTCCTCCTCTTCCT
1 CTTCCTCCTCTTCCT
64743395 ATTCACCTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (15 bp):
CTTCCTCCTCTTCCT
Found at i:64743404 original size:21 final size:21
Alignment explanation
Indices: 64743365--64743419 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
64743355 ATGAAAAGTG
*
64743365 CTTCTTCCTCTTCCTCTTCCTC
1 CTTCTTCCTATTCCTCTTCC-C
64743387 C-TCTTCCTATTCAC-CTTCCC
1 CTTCTTCCTATTC-CTCTTCCC
*
64743407 CTTCTTCTTATTC
1 CTTCTTCCTATTC
64743420 TCCCTCTCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.05, C:0.45, G:0.00, T:0.49
Consensus pattern (21 bp):
CTTCTTCCTATTCCTCTTCCC
Found at i:64743427 original size:6 final size:6
Alignment explanation
Indices: 64743417--64743455 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
64743407 CTTCTTCTTA
* *
64743417 TTCTCC CTCTCC TTCTCC TTCTCC TTCTCC TTCTAC TTC
1 TTCTCC TTCTCC TTCTCC TTCTCC TTCTCC TTCTCC TTC
64743456 ATATCTCTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.03, C:0.49, G:0.00, T:0.49
Consensus pattern (6 bp):
TTCTCC
Found at i:64743430 original size:21 final size:21
Alignment explanation
Indices: 64743384--64743432 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
64743374 CTTCCTCTTC
*
64743384 CTCC-TCTTCCTATTCACCTT
1 CTCCTTCTTCCTATTCACCCT
* * *
64743404 CCCCTTCTTCTTATTCTCCCT
1 CTCCTTCTTCCTATTCACCCT
64743425 CTCCTTCT
1 CTCCTTCT
64743433 CCTTCTCCTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.06, C:0.47, G:0.00, T:0.47
Consensus pattern (21 bp):
CTCCTTCTTCCTATTCACCCT
Found at i:64748500 original size:25 final size:25
Alignment explanation
Indices: 64748472--64748519 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
64748462 TCATAATATA
64748472 TTTTCTCTGTCTGCCTTATGGCACG
1 TTTTCTCTGTCTGCCTTATGGCACG
* *
64748497 TTTTCTGTGTCTGCCTTTTGGCA
1 TTTTCTCTGTCTGCCTTATGGCA
64748520 TGCTCTTCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.06, C:0.25, G:0.21, T:0.48
Consensus pattern (25 bp):
TTTTCTCTGTCTGCCTTATGGCACG
Found at i:64754068 original size:17 final size:17
Alignment explanation
Indices: 64754046--64754092 Score: 85
Period size: 17 Copynumber: 2.8 Consensus size: 17
64754036 GGCTCAGGTT
64754046 GCTTTGTTTTGTTGATG
1 GCTTTGTTTTGTTGATG
*
64754063 GCTTTGTTTTGTTTATG
1 GCTTTGTTTTGTTGATG
64754080 GCTTTGTTTTGTT
1 GCTTTGTTTTGTT
64754093 ACTTTATTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.04, C:0.06, G:0.26, T:0.64
Consensus pattern (17 bp):
GCTTTGTTTTGTTGATG
Found at i:64756040 original size:10 final size:10
Alignment explanation
Indices: 64756025--64756083 Score: 59
Period size: 10 Copynumber: 5.9 Consensus size: 10
64756015 CATTACTATA
*
64756025 TATATTTGTT
1 TATATTTATT
64756035 TATATTTA-T
1 TATATTTATT
64756044 T-TATTTATT
1 TATATTTATT
*
64756053 TATTTTTATT
1 TATATTTATT
64756063 TATTTATTTATT
1 TA--TATTTATT
*
64756075 TATTTTTAT
1 TATATTTAT
64756084 CTTTTTTCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
8 6 0.15
9 4 0.10
10 22 0.54
12 9 0.22
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (10 bp):
TATATTTATT
Found at i:64756044 original size:4 final size:4
Alignment explanation
Indices: 64756037--64756079 Score: 72
Period size: 4 Copynumber: 11.2 Consensus size: 4
64756027 TATTTGTTTA
64756037 TATT TATT TATT TATT TA-T T-TT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT T
64756080 TTATCTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 4 0.11
4 33 0.89
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TATT
Found at i:64756062 original size:22 final size:22
Alignment explanation
Indices: 64756027--64756083 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
64756017 TTACTATATA
* *
64756027 TATTTGTTTATATTTATTTATT
1 TATTTATTTTTATTTATTTATT
64756049 TATTTATTTTTATTTATTTATT
1 TATTTATTTTTATTTATTTATT
64756071 TATTTATTTTTAT
1 TATTTATTTTTAT
64756084 CTTTTTTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (22 bp):
TATTTATTTTTATTTATTTATT
Found at i:64756074 original size:18 final size:18
Alignment explanation
Indices: 64756027--64756102 Score: 82
Period size: 18 Copynumber: 4.2 Consensus size: 18
64756017 TTACTATATA
* *
64756027 TATTTGTTTATATTTATT
1 TATTTATTTATTTTTATT
64756045 TATTTATTTATTTTTATT
1 TATTTATTTATTTTTATT
64756063 TATTTATTTATTTATT-TT
1 TATTTATTTATTT-TTATT
* * *
64756081 TATCTTTTTTCTTTTCATT
1 TAT-TTATTTATTTTTATT
64756100 TAT
1 TAT
64756103 CTAGGTTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
18 35 0.70
19 15 0.30
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (18 bp):
TATTTATTTATTTTTATT
Found at i:64760425 original size:8 final size:8
Alignment explanation
Indices: 64760412--64760461 Score: 73
Period size: 8 Copynumber: 6.2 Consensus size: 8
64760402 GAATTGTTCT
64760412 TAAAAAAA
1 TAAAAAAA
64760420 TAAAAAAA
1 TAAAAAAA
*
64760428 TGAAAAAA
1 TAAAAAAA
*
64760436 TAAAAGAA
1 TAAAAAAA
*
64760444 GAAAAAAA
1 TAAAAAAA
64760452 TAAAAAAA
1 TAAAAAAA
64760460 TA
1 TA
64760462 GAATAAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (8 bp):
TAAAAAAA
Found at i:64760435 original size:16 final size:17
Alignment explanation
Indices: 64760413--64760470 Score: 75
Period size: 16 Copynumber: 3.4 Consensus size: 17
64760403 AATTGTTCTT
64760413 AAAAAAATAAAAAAATG
1 AAAAAAATAAAAAAATG
*
64760430 -AAAAAATAAAAGAA-G
1 AAAAAAATAAAAAAATG
64760445 AAAAAAATAAAAAAATAG
1 AAAAAAATAAAAAAAT-G
64760463 AATAAAAA
1 AA-AAAAA
64760471 ATATATAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
15 1 0.03
16 26 0.74
18 3 0.09
19 5 0.14
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (17 bp):
AAAAAAATAAAAAAATG
Found at i:64760480 original size:22 final size:21
Alignment explanation
Indices: 64760421--64760482 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 21
64760411 TTAAAAAAAT
*
64760421 AAAAAAATGAAAAAATAAAAGAAG
1 AAAAAAAT--AAAAA-AATAGAAG
*
64760445 AAAAAAATAAAAAAATAGAAT
1 AAAAAAATAAAAAAATAGAAG
64760466 AAAAAATATATAAAAAA
1 AAAAAA-ATA-AAAAAA
64760483 CATATGTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 12 0.35
22 8 0.24
23 6 0.18
24 8 0.24
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.13
Consensus pattern (21 bp):
AAAAAAATAAAAAAATAGAAG
Found at i:64762203 original size:18 final size:17
Alignment explanation
Indices: 64762170--64762208 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
64762160 TTGTATAAAT
64762170 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
64762188 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
64762205 TGTG
1 TGTG
64762209 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:64762461 original size:23 final size:23
Alignment explanation
Indices: 64762434--64762531 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
64762424 AGTGTTATTG
64762434 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
64762457 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
64762480 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
64762502 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
64762525 ATCAGTG
1 ATCAGTG
64762532 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:64762500 original size:45 final size:45
Alignment explanation
Indices: 64762436--64762524 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
64762426 TGTTATTGAT
* *
64762436 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
64762481 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
64762525 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:64769575 original size:18 final size:17
Alignment explanation
Indices: 64769542--64769580 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
64769532 TTGTATAAAT
64769542 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
64769560 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
64769577 TGTG
1 TGTG
64769581 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:64769833 original size:23 final size:23
Alignment explanation
Indices: 64769806--64769903 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
64769796 AGTGTTATTG
64769806 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
64769829 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
64769852 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
64769874 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
64769897 ATCAGTG
1 ATCAGTG
64769904 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:64769872 original size:45 final size:45
Alignment explanation
Indices: 64769808--64769896 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
64769798 TGTTATTGAT
* *
64769808 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
64769853 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
64769897 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:64772012 original size:39 final size:39
Alignment explanation
Indices: 64771969--64772100 Score: 185
Period size: 39 Copynumber: 3.4 Consensus size: 39
64771959 GGTTCTTAGC
* * *
64771969 CCAGATATTTTTCCAGCACT-TAGCCTACGGACTTTAAGT
1 CCAGATATATTTCCAGCA-TAAAGCCTGCGGACTTTAAGT
*
64772008 CCAGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCAGATATATTTCCAGCATAAAGCCTGCGGACTTTAAGT
*
64772047 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTTAAGT
1 CCAGATATATTTCCAGCATAAAGCCTGCGGACTTTAAGT
* *
64772086 CCGGATATTTTTCCA
1 CCAGATATATTTCCA
64772101 ATACCATGCA
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 84 0.99
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (39 bp):
CCAGATATATTTCCAGCATAAAGCCTGCGGACTTTAAGT
Found at i:64778932 original size:16 final size:16
Alignment explanation
Indices: 64778911--64778978 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
64778901 TTTGGTTCGC
64778911 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
64778927 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGG
*
64778943 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
*
64778959 TGTTTTGGATTAGAGG
1 TGTATTGGATTAGAGG
64778975 TGTA
1 TGTA
64778979 ATAGCAAATC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.26, C:0.00, G:0.34, T:0.40
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:64779231 original size:16 final size:16
Alignment explanation
Indices: 64779194--64779235 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
64779184 TTAATCATAT
*
64779194 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
64779210 TT-AAATATATTATAA
1 TTAAAATATATTATAA
64779225 TTAAAATATAT
1 TTAAAATATAT
64779236 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:64779242 original size:14 final size:15
Alignment explanation
Indices: 64779203--64779244 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
64779193 TTTAAACATA
*
64779203 ATTATTATTAAATAT
1 ATTATAATTAAATAT
64779218 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
64779232 A-TATAATTTAATA
1 ATTATAATTAAATA
64779245 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:64779295 original size:61 final size:61
Alignment explanation
Indices: 64779229--64779416 Score: 201
Period size: 61 Copynumber: 3.1 Consensus size: 61
64779219 TTATAATTAA
64779229 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * *
64779290 AATATATGATACT-ATAAAA-T-ATAAT--TTAACATAATTATTAT-TAAATATA-TTATAATTA
1 AATATATAAT-TTAATAAAATTCTTAATAATT-A-AT-ATTCTTATATGAATTTACTCA-AATCA
*
64779348 A
61 T
64779349 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
64779410 AATATAT
1 AATATAT
64779417 GATACTGTAA
Statistics
Matches: 97, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
57 2 0.02
58 4 0.04
59 31 0.32
60 16 0.16
61 38 0.39
62 4 0.04
63 2 0.02
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
Found at i:64779342 original size:120 final size:120
Alignment explanation
Indices: 64779192--64779512 Score: 597
Period size: 120 Copynumber: 2.7 Consensus size: 120
64779182 ATTTAATCAT
64779192 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
64779257 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
65 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
64779313 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
64779378 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATA
66 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
** *
64779433 AAGTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAACAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
64779498 TTAATATTCTTATAT
66 TTAATATTCTTATAT
64779513 TAAGAGATCT
Statistics
Matches: 196, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
120 192 0.98
121 4 0.02
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
Found at i:64779353 original size:16 final size:16
Alignment explanation
Indices: 64779309--64779355 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
64779299 TACTATAAAA
*
64779309 TATAATTTAACATA-AT
1 TATAA-TTAAAATATAT
*
64779325 TATTATT-AAATATAT
1 TATAATTAAAATATAT
64779340 TATAATTAAAATATAT
1 TATAATTAAAATATAT
64779356 AATTTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 4 0.15
15 10 0.38
16 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TATAATTAAAATATAT
Found at i:64779482 original size:14 final size:15
Alignment explanation
Indices: 64779443--64779484 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
64779433 AAGTAACATA
*
64779443 ATTATTATTAAATAT
1 ATTATAATTAAATAT
64779458 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
64779472 A-TATAATTTAATA
1 ATTATAATTAAATA
64779485 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:64788407 original size:22 final size:22
Alignment explanation
Indices: 64788379--64788425 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
64788369 CTTTCGTGGT
64788379 CAGAGACGAATCCAGGGGTTCG
1 CAGAGACGAATCCAGGGGTTCG
*
64788401 CAGAGACGAATCCAGGGGTTGG
1 CAGAGACGAATCCAGGGGTTCG
64788423 CAG
1 CAG
64788426 GGGGTCAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.38, T:0.13
Consensus pattern (22 bp):
CAGAGACGAATCCAGGGGTTCG
Found at i:64789446 original size:230 final size:230
Alignment explanation
Indices: 64789043--64789501 Score: 900
Period size: 230 Copynumber: 2.0 Consensus size: 230
64789033 AAAGTTCAGT
*
64789043 TATTGGTTAATTTGGCTCGAAAGCGAGCAATTAACCAAATTAATCGAACTTAATAACTAATATCA
1 TATTGGTTAATTTGGCTCGAAAGCGAGCAATTAACCAAATTAATCGAACTTAATAACTAATATAA
64789108 TATATTATATGTATTATGCTTAGCCTACTGCCCACCTAATCCCTAACCAGCGGCTTACCCCAGCA
66 TATATTATATGTATTATGCTTAGCCTACTGCCCACCTAATCCCTAACCAGCGGCTTACCCCAGCA
*
64789173 CTCCTAAGTCCTACCCACTATAAACCTAATTTAGTATAATTTATAAACCCAACCCAATTTACAGT
131 CTCCTAAGCCCTACCCACTATAAACCTAATTTAGTATAATTTATAAACCCAACCCAATTTACAGT
64789238 ATTGGAACTAAATCCGCAATTTTCATAAAATACAG
196 ATTGGAACTAAATCCGCAATTTTCATAAAATACAG
64789273 TATTGGTTAATTTGGCTCGAAAGCGAGCAATTAACCAAATTAATCGAACTTAATAACTAATATAA
1 TATTGGTTAATTTGGCTCGAAAGCGAGCAATTAACCAAATTAATCGAACTTAATAACTAATATAA
64789338 TATATTATATGTATTATGCTTAGCCTACTGCCCACCTAATCCCTAACCAGCGGCTTACCCCAGCA
66 TATATTATATGTATTATGCTTAGCCTACTGCCCACCTAATCCCTAACCAGCGGCTTACCCCAGCA
64789403 CTCCTAAGCCCTACCCACTATAAACCTAATTTAGTATAATTTATAAACCCAACCCAATTTACAGT
131 CTCCTAAGCCCTACCCACTATAAACCTAATTTAGTATAATTTATAAACCCAACCCAATTTACAGT
64789468 ATTGGAACTAAATCCGCAATTTTCATAAAATACA
196 ATTGGAACTAAATCCGCAATTTTCATAAAATACA
64789502 AGTACTAGTA
Statistics
Matches: 227, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
230 227 1.00
ACGTcount: A:0.36, C:0.24, G:0.10, T:0.30
Consensus pattern (230 bp):
TATTGGTTAATTTGGCTCGAAAGCGAGCAATTAACCAAATTAATCGAACTTAATAACTAATATAA
TATATTATATGTATTATGCTTAGCCTACTGCCCACCTAATCCCTAACCAGCGGCTTACCCCAGCA
CTCCTAAGCCCTACCCACTATAAACCTAATTTAGTATAATTTATAAACCCAACCCAATTTACAGT
ATTGGAACTAAATCCGCAATTTTCATAAAATACAG
Found at i:64796247 original size:21 final size:22
Alignment explanation
Indices: 64796221--64796261 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
64796211 AAATGAAATA
*
64796221 GTTTTGTCTTTTAA-TTTAATG
1 GTTTTGACTTTTAACTTTAATG
64796242 GTTTTGACTTTTAACTTTAA
1 GTTTTGACTTTTAACTTTAA
64796262 AAAATGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.22, C:0.07, G:0.12, T:0.59
Consensus pattern (22 bp):
GTTTTGACTTTTAACTTTAATG
Found at i:64798542 original size:728 final size:728
Alignment explanation
Indices: 64797146--64802971 Score: 11427
Period size: 728 Copynumber: 8.0 Consensus size: 728
64797136 CATTTCCTTG
64797146 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
1 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
64797211 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
66 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
64797276 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
131 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
64797341 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
196 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
64797406 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
261 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
64797471 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
326 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
64797536 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
391 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
64797601 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
456 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
64797666 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
521 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
64797731 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
586 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
64797796 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
651 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
64797861 TTTAGTAGTATTA
716 TTTAGTAGTATTA
64797874 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
1 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
64797939 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
66 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
64798004 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
131 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
64798069 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
196 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
64798134 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
261 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
*
64798199 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACCTAATCCTGGGAAATG
326 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
64798264 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
391 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
64798329 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
456 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
* * *
64798394 TTGTTTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGTCGCTGGTCAATCTCATCCAAAT
521 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
*
64798459 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAGGTTGCCAGTAAAT
586 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
*
64798524 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCGCTTCTGTTTACAATATATTCTGC
651 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
64798589 TTTAGTAGTATTA
716 TTTAGTAGTATTA
*
64798602 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGATTGGCCTTAA
1 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
*
64798667 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTACCGTGGCTGAATGGTGGTGAG
66 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
64798732 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
131 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
* *
64798797 CCAGAATTGTGTTCTGTGAACTGTATACAAGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
196 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
64798862 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
261 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
64798927 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
326 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
64798992 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
391 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
64799057 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
456 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
64799122 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
521 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
*
64799187 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCAAGTAAAT
586 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
64799252 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
651 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
64799317 TTTAGTAGTATTA
716 TTTAGTAGTATTA
*
64799330 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGATTGGCCTTAA
1 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
* * * *
64799395 ACGGAGATTAAACGGAGCCTCTTCTCATTATCGAAAGTCAATTGCCATGGCTGAATGGTGGTGAG
66 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
64799460 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
131 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
64799525 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
196 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
64799590 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
261 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
64799655 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
326 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
64799720 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
391 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
64799785 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
456 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
64799850 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
521 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
64799915 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
586 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
64799980 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
651 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
64800045 TTTAGTAGTATTA
716 TTTAGTAGTATTA
64800058 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
1 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
64800123 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
66 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
64800188 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
131 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
*
64800253 CTAGAATTATGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
196 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
64800318 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
261 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
64800383 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
326 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
64800448 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
391 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
64800513 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
456 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
64800578 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
521 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
64800643 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
586 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
64800708 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
651 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
64800773 TTTAGTAGTATTA
716 TTTAGTAGTATTA
64800786 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
1 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
64800851 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
66 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
64800916 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
131 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
*
64800981 CTAGAATTATGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
196 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
64801046 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
261 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
64801111 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
326 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
64801176 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
391 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
64801241 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
456 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
64801306 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
521 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
64801371 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
586 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
64801436 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
651 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
64801501 TTTAGTAGTATTA
716 TTTAGTAGTATTA
64801514 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
1 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
64801579 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
66 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
64801644 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
131 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
*
64801709 CTAGAATTATGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
196 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
64801774 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
261 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
64801839 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
326 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
64801904 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
391 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
64801969 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
456 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
64802034 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
521 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
*
64802099 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCAAGTAAAT
586 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
*
64802164 CAAATTTTCTTTTTGGGTTTTTGCTTAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
651 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
64802229 TTTAGTAGTATTA
716 TTTAGTAGTATTA
64802242 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
1 GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
*
64802307 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCATGGCTGAATGGTGGTGAG
66 ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
64802372 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
131 ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
64802437 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
196 CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
64802502 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
261 TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
64802567 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
326 AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
64802632 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
391 CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
64802697 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
456 ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
*
64802762 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAATT
521 TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
64802827 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
586 CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
* *
64802892 CAAATTTTCTTTTTGGTTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGT
651 CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
64802957 TTTAGTAGTATTA
716 TTTAGTAGTATTA
64802970 GC
1 GC
64802972 ATAAGATTGT
Statistics
Matches: 5058, Mismatches: 40, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
728 5058 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (728 bp):
GCTAAAATCGAAGCAAAGAGTGGCTTTGGGGTGGTGAGCACCGAGACCTTCGGGCTTGGCCTTAA
ACGGAGATTAAACGGAGCCTCTTCTCATCACCGGAAGTCAATTGCCGTGGCTGAATGGTGGTGAG
ATAGAGATGGTCGGCCAAAAAGGAGGAATTACGAGGGTGTTTAAGTTTTTCTTTCTGTTTTACTG
CTAGAATTGTGTTCTGTGAACTGTATACATGTGTACTGTATTGAGATTATCTATAGTGGGGATAC
TCAATCTAATGTGATCCTGAATTATGTTTAAGAAGCCGAAAAATTGTTCGAATTGTGTTAGCAGG
AACGTGACTGTGCAGTGGTACGGGGAATTCTATATTGTTATCTCATAACTTAATCCTGGGAAATG
CGTTCTAGTGTTATAAATTGTTCTACTAAACTCTTATGTAAGCATTTTTTAGCCCGGGATTAAAT
ATTTTTAATGATCAGTTTCTATTTTCACCAAAAATTCCTAGGTTTCGTTGTTCCGCTCACTACTT
TCGTCTCCTTCTCCGCTCCAACCTTCAACTGTCTCCGTCCTGCCGCTGGTCAATCTCATCCAAAT
CCAGGTATGTTTTTTTCAATCCCTTCTATATTCAATGCTACTTGTCCTTGAAGTTGCCAGTAAAT
CAAATTTTCTTTTTGGGTTTTTGCTCAAAATTTTCAATTCCTCTTCTGTTTACAATATATTCTGC
TTTAGTAGTATTA
Found at i:64806914 original size:20 final size:22
Alignment explanation
Indices: 64806875--64806915 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
64806865 TAATATTACA
*
64806875 TATATATATTTTATAGTTGTTT
1 TATATATATTATATAGTTGTTT
64806897 TATATATATTAT-TA-TTGTT
1 TATATATATTATATAGTTGTT
64806916 CCTAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 2 0.11
22 11 0.61
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.63
Consensus pattern (22 bp):
TATATATATTATATAGTTGTTT
Found at i:64807883 original size:48 final size:48
Alignment explanation
Indices: 64807812--64807903 Score: 166
Period size: 48 Copynumber: 1.9 Consensus size: 48
64807802 TCGACACTAA
64807812 GACACAAATTAATCAACTAGGTACCAATTTTGGGCGTATCGAGGGTGC
1 GACACAAATTAATCAACTAGGTACCAATTTTGGGCGTATCGAGGGTGC
* *
64807860 GACACTAATTAGTCAACTAGGTACCAATTTTGGGCGTATCGAGG
1 GACACAAATTAATCAACTAGGTACCAATTTTGGGCGTATCGAGG
64807904 TTGCTAATCC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (48 bp):
GACACAAATTAATCAACTAGGTACCAATTTTGGGCGTATCGAGGGTGC
Done.