Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 193 of 284
Found at i:65158132 original size:51 final size:52
Alignment explanation
Indices: 65158072--65158178 Score: 171
Period size: 52 Copynumber: 2.1 Consensus size: 52
65158062 TTATAAAAAG
*
65158072 TATGGGGG-AAAATGGTAATTTTGCCGAGAATGTAAATTGAGCCCAATTGAA
1 TATGGGGGAAAAATGGTAATTTTGCCGAGAATGTAAATTGAACCCAATTGAA
* **
65158123 TATGGGGGAAAAATGGTAATTTTGCCTAGAATGTAAATTGAACCTTATTGAA
1 TATGGGGGAAAAATGGTAATTTTGCCGAGAATGTAAATTGAACCCAATTGAA
65158175 TATG
1 TATG
65158179 AAATGTATTG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
51 8 0.16
52 43 0.84
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (52 bp):
TATGGGGGAAAAATGGTAATTTTGCCGAGAATGTAAATTGAACCCAATTGAA
Found at i:65158630 original size:16 final size:16
Alignment explanation
Indices: 65158580--65158630 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
65158570 TTTTGAGTTA
65158580 GGATTTAGCTTGGACT
1 GGATTTAGCTTGGACT
*
65158596 GGTAATCCTA-CTT-GACT
1 GG--AT-TTAGCTTGGACT
65158613 GGATTTAGCTTGGACT
1 GGATTTAGCTTGGACT
65158629 GG
1 GG
65158631 TAATCCAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 10
0.70 0.05 0.25
Matches are distributed among these distances:
14 2 0.07
15 5 0.18
16 8 0.29
17 6 0.21
18 5 0.18
19 2 0.07
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.35
Consensus pattern (16 bp):
GGATTTAGCTTGGACT
Found at i:65160032 original size:79 final size:79
Alignment explanation
Indices: 65159942--65160099 Score: 307
Period size: 79 Copynumber: 2.0 Consensus size: 79
65159932 GAACAATTTC
*
65159942 TACTGTTCATAATTGGCCTCGCGGGCCCATTTAAGGGAAAATATGATTGATGTTGCATATGAATA
1 TACTGTTCATAATTGGCCTCGAGGGCCCATTTAAGGGAAAATATGATTGATGTTGCATATGAATA
65160007 GTATTTTAACATGA
66 GTATTTTAACATGA
65160021 TACTGTTCATAATTGGCCTCGAGGGCCCATTTAAGGGAAAATATGATTGATGTTGCATATGAATA
1 TACTGTTCATAATTGGCCTCGAGGGCCCATTTAAGGGAAAATATGATTGATGTTGCATATGAATA
65160086 GTATTTTAACATGA
66 GTATTTTAACATGA
65160100 GTTATCTATG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (79 bp):
TACTGTTCATAATTGGCCTCGAGGGCCCATTTAAGGGAAAATATGATTGATGTTGCATATGAATA
GTATTTTAACATGA
Found at i:65161850 original size:70 final size:70
Alignment explanation
Indices: 65161758--65161898 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
65161748 TTTATTTTAT
*
65161758 CATTTATCACTTTTTAACCGAATTAACCTTTAAAATATTTAATAATTACACTAATGCAAAGCCAT
1 CATTCATCACTTTTTAACCGAATTAACCTTTAAAATATTTAATAATTACACTAATGCAAAGCCAT
65161823 CAAAA
66 CAAAA
65161828 CATTCATCACTTTTTAACCGAATTAACCTTTAAAATATTTAATAATTACACTAATGCAAAGCCAT
1 CATTCATCACTTTTTAACCGAATTAACCTTTAAAATATTTAATAATTACACTAATGCAAAGCCAT
65161893 CAAAA
66 CAAAA
65161898 C
1 C
65161899 CCACTATCTC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.43, C:0.20, G:0.04, T:0.33
Consensus pattern (70 bp):
CATTCATCACTTTTTAACCGAATTAACCTTTAAAATATTTAATAATTACACTAATGCAAAGCCAT
CAAAA
Found at i:65163986 original size:71 final size:71
Alignment explanation
Indices: 65163870--65164011 Score: 225
Period size: 71 Copynumber: 2.0 Consensus size: 71
65163860 TTCTCTTTAC
*
65163870 AAAAGTTGTTTATCTATCAACAATCATTCATTTTCTACCATAAAACTTCATAATTCA-ACTATAC
1 AAAAGTTGTTTATCTATCAACAATCATTCATTTTCTACCATAAAACTTCAAAATTCATAC-ATAC
65163934 TCATCCA
65 TCATCCA
* *
65163941 AAAAGTTGTTTATCTATCAACAA-CTTTTCATTTTCTACCATAAAACTTTAAAATTCATACATAC
1 AAAAGTTGTTTATCTATCAACAATC-ATTCATTTTCTACCATAAAACTTCAAAATTCATACATAC
65164005 TCATCCA
65 TCATCCA
65164012 TGGAAAAACC
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
70 1 0.02
71 63 0.95
72 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.37
Consensus pattern (71 bp):
AAAAGTTGTTTATCTATCAACAATCATTCATTTTCTACCATAAAACTTCAAAATTCATACATACT
CATCCA
Found at i:65166517 original size:26 final size:25
Alignment explanation
Indices: 65166389--65166624 Score: 137
Period size: 26 Copynumber: 9.4 Consensus size: 25
65166379 TTTCTCATAC
*
65166389 ATTATTTATTTTAAATTGTTTTAT-T
1 ATTATTTATTTTAAACT-TTTTATAT
* * * *
65166414 ATAATTTACTTT-AAGTTTTTCACAT
1 ATTATTTATTTTAAACTTTTT-ATAT
* * *
65166439 ATTATGTATTTTAAACTATTT-CA-
1 ATTATTTATTTTAAACTTTTTATAT
** *
65166462 A--ATCCATTTTAAAATTTTTATAT
1 ATTATTTATTTTAAACTTTTTATAT
* *
65166485 ATTATTTATTTTAAACTGTTATATGT
1 ATTATTTATTTTAAACT-TTTTATAT
* *
65166511 ATTATTTATTTT-GA-TTATATATAT
1 ATTATTTATTTTAAACTT-TTTATAT
* * * *
65166535 ATCATTTACTTTTAAATTGTTTTGTGT
1 ATTATTTA-TTTTAAACT-TTTTATAT
* *
65166562 ATTATCTATTTTAAATTTCTTTTTACAT
1 ATTATTTATTTTAAA---CTTTTTATAT
65166590 ATTATTTATTTTAAACCTTTTTATAT
1 ATTATTTATTTTAAA-CTTTTTATAT
65166616 ATTATTTAT
1 ATTATTTAT
65166625 ATTGTCATAT
Statistics
Matches: 160, Mismatches: 35, Indels: 31
0.71 0.15 0.14
Matches are distributed among these distances:
21 14 0.09
22 1 0.01
23 7 0.04
24 20 0.12
25 36 0.22
26 50 0.31
27 11 0.07
28 20 0.12
29 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (25 bp):
ATTATTTATTTTAAACTTTTTATAT
Found at i:65166593 original size:28 final size:26
Alignment explanation
Indices: 65166561--65166620 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
65166551 TTGTTTTGTG
*
65166561 TATTATCTATTTTAAATTTCTTTTTACA
1 TATTATCTATTTTAAA--CCTTTTTACA
* *
65166589 TATTATTTATTTTAAACCTTTTTATA
1 TATTATCTATTTTAAACCTTTTTACA
65166615 TATTAT
1 TATTAT
65166621 TTATATTGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 14 0.48
28 15 0.52
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (26 bp):
TATTATCTATTTTAAACCTTTTTACA
Found at i:65166669 original size:27 final size:26
Alignment explanation
Indices: 65166637--65166726 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 26
65166627 TGTCATATGC
65166637 ATTATTTATTTTAAATTTTTTTCATAT
1 ATTATTTATTTTAAATTTTTTT-ATAT
*
65166664 ATTATTTATTTTAAA--CTTTTATAT
1 ATTATTTATTTTAAATTTTTTTATAT
* *
65166688 ATTATTTACTCTAAATTTATTTTATAT
1 ATTATTTATTTTAAATTT-TTTTATAT
65166715 ATTATTTTATTT
1 ATTA-TTTATTT
65166727 CATTTTTATT
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
24 17 0.32
25 4 0.08
27 27 0.51
28 5 0.09
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (26 bp):
ATTATTTATTTTAAATTTTTTTATAT
Found at i:65166706 original size:22 final size:23
Alignment explanation
Indices: 65166660--65166707 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
65166650 AATTTTTTTC
* *
65166660 ATATATTATTTATTTTAAACTTTT
1 ATATATTATTTACTCTAAAC-TTT
65166684 ATATATTATTTACTCTAAA-TTT
1 ATATATTATTTACTCTAAACTTT
65166706 AT
1 AT
65166708 TTTATATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 5 0.23
24 17 0.77
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (23 bp):
ATATATTATTTACTCTAAACTTT
Found at i:65177201 original size:5 final size:5
Alignment explanation
Indices: 65177191--65177220 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
65177181 ATCACTTTCA
65177191 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
65177221 TCCCAAATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:65179646 original size:19 final size:19
Alignment explanation
Indices: 65179614--65179702 Score: 90
Period size: 19 Copynumber: 4.7 Consensus size: 19
65179604 TAATTGGACT
* * *
65179614 CACATGCCCCTGTGCAGCC
1 CACATACCCGTGTGGAGCC
* *
65179633 CACATACTCATGT-GAGGCC
1 CACATACCCGTGTGGA-GCC
* *
65179652 CATATACCCGTGTGGGGCC
1 CACATACCCGTGTGGAGCC
*
65179671 CACATACCCGTGTGGGGCC
1 CACATACCCGTGTGGAGCC
65179690 CACATACCCGTGT
1 CACATACCCGTGT
65179703 AGGGCCAACA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
18 1 0.02
19 57 0.97
20 1 0.02
ACGTcount: A:0.19, C:0.37, G:0.25, T:0.19
Consensus pattern (19 bp):
CACATACCCGTGTGGAGCC
Found at i:65179690 original size:38 final size:38
Alignment explanation
Indices: 65179630--65179743 Score: 122
Period size: 38 Copynumber: 3.0 Consensus size: 38
65179620 CCCCTGTGCA
* * *
65179630 GCCCACATACTCATGTGAGGCCCATATACCCGTGTGGG
1 GCCCACATACCCGTGTGGGGCCCATATACCCGTGTGGG
* *
65179668 GCCCACATACCCGTGTGGGGCCCACATACCCGTGTAGG
1 GCCCACATACCCGTGTGGGGCCCATATACCCGTGTGGG
* ** * **
65179706 GCCAACATGTCTGTGTGGGG-CCATATGTCCGTGTGGG
1 GCCCACATACCCGTGTGGGGCCCATATACCCGTGTGGG
65179743 G
1 G
65179744 TCTATGTGCT
Statistics
Matches: 63, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
37 14 0.22
38 49 0.78
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.21
Consensus pattern (38 bp):
GCCCACATACCCGTGTGGGGCCCATATACCCGTGTGGG
Found at i:65179728 original size:19 final size:19
Alignment explanation
Indices: 65179630--65179727 Score: 115
Period size: 19 Copynumber: 5.2 Consensus size: 19
65179620 CCCCTGTGCA
* * *
65179630 GCCCACATACTCATGTGAG
1 GCCCACATACCCGTGTGGG
*
65179649 GCCCATATACCCGTGTGGG
1 GCCCACATACCCGTGTGGG
65179668 GCCCACATACCCGTGTGGG
1 GCCCACATACCCGTGTGGG
*
65179687 GCCCACATACCCGTGTAGG
1 GCCCACATACCCGTGTGGG
* ** *
65179706 GCCAACATGTCTGTGTGGG
1 GCCCACATACCCGTGTGGG
65179725 GCC
1 GCC
65179728 ATATGTCCGT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 68 1.00
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (19 bp):
GCCCACATACCCGTGTGGG
Found at i:65179790 original size:19 final size:19
Alignment explanation
Indices: 65179643--65179807 Score: 113
Period size: 19 Copynumber: 8.8 Consensus size: 19
65179633 CACATACTCA
* * *
65179643 TGTGAGGCCCATATACCCG
1 TGTGGGGCCCATATGCTCG
* * *
65179662 TGTGGGGCCCACATACCCG
1 TGTGGGGCCCATATGCTCG
* * *
65179681 TGTGGGGCCCACATACCCG
1 TGTGGGGCCCATATGCTCG
* * *
65179700 TGTAGGGCCAACATG-TCTG
1 TGTGGGGCCCATATGCTC-G
65179719 TGTGGGG-CCATATG-TCCG
1 TGTGGGGCCCATATGCT-CG
* * *
65179737 TGTGGGGTCTATGTGCTCG
1 TGTGGGGCCCATATGCTCG
* *
65179756 TGTGGGACCCATATGCTCT
1 TGTGGGGCCCATATGCTCG
*
65179775 TGTGGGGCCCATATGCTCA
1 TGTGGGGCCCATATGCTCG
*
65179794 TAT-GGGCCCATATG
1 TGTGGGGCCCATATG
65179808 TTCTTATGGC
Statistics
Matches: 123, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
18 26 0.21
19 96 0.78
20 1 0.01
ACGTcount: A:0.16, C:0.27, G:0.32, T:0.25
Consensus pattern (19 bp):
TGTGGGGCCCATATGCTCG
Found at i:65179802 original size:18 final size:18
Alignment explanation
Indices: 65179758--65179820 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
65179748 TGTGCTCGTG
*
65179758 TGGGACCCATATGCTCTTG
1 TGGG-CCCATATGCTCTTA
*
65179777 TGGGGCCCATATGCTCATA
1 T-GGGCCCATATGCTCTTA
*
65179796 TGGGCCCATATGTTCTTA
1 TGGGCCCATATGCTCTTA
65179814 T-GGCCCA
1 TGGGCCCA
65179821 CACGACCACA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
17 6 0.15
18 16 0.41
19 14 0.36
20 3 0.08
ACGTcount: A:0.17, C:0.27, G:0.25, T:0.30
Consensus pattern (18 bp):
TGGGCCCATATGCTCTTA
Found at i:65181994 original size:43 final size:43
Alignment explanation
Indices: 65181925--65182152 Score: 271
Period size: 43 Copynumber: 5.3 Consensus size: 43
65181915 GTTTATCTGA
* *
65181925 AAAAGCGCCGCTAAAAGTCAAGGCTTTTAGCGGTGTTTGTGAG
1 AAAAGCGCCGCTAAAAGTCAAGGCCTTTAGCGGCGTTTGTGAG
* * * * *
65181968 AAAAGCGCCACTAAAAGCCAAAGCTTTTAGCGGCATTTGT-AG
1 AAAAGCGCCGCTAAAAGTCAAGGCCTTTAGCGGCGTTTGTGAG
* *** **
65182010 AAAAACGTAACTAAAAGTCGTGGCCTTTAGCGGCGTTTGTGAG
1 AAAAGCGCCGCTAAAAGTCAAGGCCTTTAGCGGCGTTTGTGAG
* **
65182053 AAAAGCGTCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGTGAG
1 AAAAGCGCCGCTAAAAGTCAAGGCCTTTAGCGGCGTTTGTGAG
* *
65182096 AAAAGCGCCGTTAAAAGT-AATGGCCTTTAGCGGCGTTTGTGAT
1 AAAAGCGCCGCTAAAAGTCAA-GGCCTTTAGCGGCGTTTGTGAG
65182139 AAAAGCGCCGCTAA
1 AAAAGCGCCGCTAA
65182153 TGGCTTTTAG
Statistics
Matches: 160, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
42 33 0.21
43 127 0.79
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCAAGGCCTTTAGCGGCGTTTGTGAG
Found at i:65182025 original size:42 final size:43
Alignment explanation
Indices: 65181935--65182056 Score: 120
Period size: 42 Copynumber: 2.9 Consensus size: 43
65181925 AAAAGCGCCG
* * ** * *
65181935 CTAAAAGTCAAGGCTTTTAGCGGTGTTTGTGAGAAAAGCGCCA
1 CTAAAAGCCAAAGCTTTTAGCGGCATTTGTGAGAAAAACGCAA
*
65181978 CTAAAAGCCAAAGCTTTTAGCGGCATTTGT-AGAAAAACGTAA
1 CTAAAAGCCAAAGCTTTTAGCGGCATTTGTGAGAAAAACGCAA
* *** * *
65182020 CTAAAAGTCGTGGCCTTTAGCGGCGTTTGTGAGAAAA
1 CTAAAAGCCAAAGCTTTTAGCGGCATTTGTGAGAAAA
65182057 GCGTCGCTAA
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 33 0.51
43 32 0.49
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (43 bp):
CTAAAAGCCAAAGCTTTTAGCGGCATTTGTGAGAAAAACGCAA
Found at i:65182082 original size:85 final size:86
Alignment explanation
Indices: 65181935--65182152 Score: 258
Period size: 85 Copynumber: 2.5 Consensus size: 86
65181925 AAAAGCGCCG
* * * * *
65181935 CTAAAAGTCAAGGCTTTTAGCGGTGTTTGTGAGAAAAGCGCCACTAAAAGCCAAAGCTTTTAGCG
1 CTAAAAGTCATGGCCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGCCAAAGCCTTTAGCG
*
65182000 GCATTTGT-AGAAAAACGTAA
66 GCATTTGTGAGAAAAACGCAA
* * * ***
65182020 CTAAAAGTCGTGGCCTTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAAGTCGTGGCCTTTAGCG
1 CTAAAAGTCATGGCCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGCCAAAGCCTTTAGCG
* * **
65182085 GCGTTTGTGAGAAAAGCGCCG
66 GCATTTGTGAGAAAAACGCAA
* * *
65182106 TTAAAAGTAATGGCCTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAA
1 CTAAAAGTCATGGCCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAA
65182153 TGGCTTTTAG
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
85 61 0.55
86 50 0.45
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (86 bp):
CTAAAAGTCATGGCCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGCCAAAGCCTTTAGCG
GCATTTGTGAGAAAAACGCAA
Found at i:65197971 original size:43 final size:45
Alignment explanation
Indices: 65197923--65198016 Score: 147
Period size: 43 Copynumber: 2.1 Consensus size: 45
65197913 TTTGTAAGCT
65197923 AGTTATGTAAGATATGATATGATATATATTTAAGT-A-TTATGTA
1 AGTTATGTAAGATATGATATGATATATATTTAAGTAAGTTATGTA
* * *
65197966 AGTTATGTAAGTTATGATATGATATATATTTATGTAAGTTGTGTA
1 AGTTATGTAAGATATGATATGATATATATTTAAGTAAGTTATGTA
65198011 AGTTAT
1 AGTTAT
65198017 ATATTTATCT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 33 0.72
44 1 0.02
45 12 0.26
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (45 bp):
AGTTATGTAAGATATGATATGATATATATTTAAGTAAGTTATGTA
Found at i:65197973 original size:9 final size:9
Alignment explanation
Indices: 65197959--65198068 Score: 84
Period size: 9 Copynumber: 12.6 Consensus size: 9
65197949 TATTTAAGTA
65197959 TTATGTAAG
1 TTATGTAAG
65197968 TTATGTAAG
1 TTATGTAAG
*
65197977 TTATGATATG
1 TTATG-TAAG
* * *
65197987 ATATAT-AT
1 TTATGTAAG
65197995 TTATGTAAG
1 TTATGTAAG
*
65198004 TTGTGTAAG
1 TTATGTAAG
* *
65198013 TTATAT-AT
1 TTATGTAAG
* *
65198021 TTATCTAGG
1 TTATGTAAG
*
65198030 TTATATAAG
1 TTATGTAAG
65198039 TTATGTAAG
1 TTATGTAAG
65198048 TTATGT-A-
1 TTATGTAAG
*
65198055 TTATGTAAA
1 TTATGTAAG
65198064 TTATG
1 TTATG
65198069 ATATCAAATA
Statistics
Matches: 78, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
7 6 0.08
8 12 0.15
9 54 0.69
10 6 0.08
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:65198024 original size:26 final size:26
Alignment explanation
Indices: 65197968--65198072 Score: 88
Period size: 26 Copynumber: 4.0 Consensus size: 26
65197958 ATTATGTAAG
* *
65197968 TTATGTAAGTTATGATATGATATATAT
1 TTATGTAAGTTATG-TAAGTTATATAT
*
65197995 TTATGTAAGTTGTGTAAGTTATATAT
1 TTATGTAAGTTATGTAAGTTATATAT
* * * * *
65198021 TTATCTAGGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATAT-AT
*
65198048 TTATGT-A-TTATGTAAATTATGATAT
1 TTATGTAAGTTATGTAAGTTAT-ATAT
65198073 CAAATATGTT
Statistics
Matches: 61, Mismatches: 15, Indels: 6
0.74 0.18 0.07
Matches are distributed among these distances:
25 12 0.20
26 30 0.49
27 19 0.31
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.49
Consensus pattern (26 bp):
TTATGTAAGTTATGTAAGTTATATAT
Found at i:65198046 original size:35 final size:34
Alignment explanation
Indices: 65197881--65198056 Score: 130
Period size: 35 Copynumber: 5.2 Consensus size: 34
65197871 ATTTTCAAGC
* *
65197881 ATATATTTATGTA-TTATGTAAGTTAAGTAAGTT
1 ATATATTTATATAGTTATGTAAGTTATGTAAGTT
* * ** * * *
65197914 -T-T-GTAAGCTAGTTATGTAAGATATGATATGAT
1 ATATATTTATATAGTTATGTAAGTTATG-TAAGTT
65197946 ATATATTTA-AGTA-TTATGTAAGTTATGTAAGTT
1 ATATATTTATA-TAGTTATGTAAGTTATGTAAGTT
* * *
65197979 ATGATATGATATATATTTATGTAAGTTGTGTAAGTT
1 AT-ATAT-TTATATAGTTATGTAAGTTATGTAAGTT
* *
65198015 ATATATTTATCTAGGTTATATAAGTTATGTAAGTT
1 ATATATTTATATA-GTTATGTAAGTTATGTAAGTT
*
65198050 ATGTATT
1 ATATATT
65198057 ATGTAAATTA
Statistics
Matches: 110, Mismatches: 22, Indels: 20
0.72 0.14 0.13
Matches are distributed among these distances:
30 4 0.04
31 13 0.12
32 5 0.05
33 7 0.06
34 23 0.21
35 36 0.33
36 22 0.20
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.47
Consensus pattern (34 bp):
ATATATTTATATAGTTATGTAAGTTATGTAAGTT
Found at i:65198225 original size:15 final size:15
Alignment explanation
Indices: 65198205--65198259 Score: 71
Period size: 15 Copynumber: 3.8 Consensus size: 15
65198195 AAGTTGCGAG
65198205 ATTAAATAATATTTA
1 ATTAAATAATATTTA
*
65198220 ATTAAATAATATTGA
1 ATTAAATAATATTTA
65198235 A--AAA-AATATTTTA
1 ATTAAATAATA-TTTA
65198248 ATTAAATAATAT
1 ATTAAATAATAT
65198260 ACATGTCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
12 4 0.12
13 7 0.21
15 19 0.56
16 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:65198486 original size:24 final size:24
Alignment explanation
Indices: 65198446--65198540 Score: 154
Period size: 24 Copynumber: 4.0 Consensus size: 24
65198436 TCAACTTAAA
* *
65198446 TGATAAAACGGATGATAATATTTT
1 TGATAAAACGGACGATAATATTTG
*
65198470 TGATAAAATGGACGATAATATTTG
1 TGATAAAACGGACGATAATATTTG
65198494 TGATAAAACGGACGATAATATTTG
1 TGATAAAACGGACGATAATATTTG
*
65198518 TGATAAAACGGACGAGAATATTT
1 TGATAAAACGGACGATAATATTT
65198541 CAATAATAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 66 1.00
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.32
Consensus pattern (24 bp):
TGATAAAACGGACGATAATATTTG
Found at i:65199215 original size:2 final size:2
Alignment explanation
Indices: 65199210--65199244 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
65199200 ATCATATATA
65199210 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
65199245 TGAGTTACAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:65199485 original size:14 final size:14
Alignment explanation
Indices: 65199466--65199493 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
65199456 TCAAAGGACA
65199466 ATGAAGTGAAGGTC
1 ATGAAGTGAAGGTC
65199480 ATGAAGTGAAGGTC
1 ATGAAGTGAAGGTC
65199494 TGTGATGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.36, T:0.21
Consensus pattern (14 bp):
ATGAAGTGAAGGTC
Found at i:65200780 original size:16 final size:14
Alignment explanation
Indices: 65200746--65200784 Score: 60
Period size: 16 Copynumber: 2.6 Consensus size: 14
65200736 AGTTGGAAAA
65200746 TTGGGGAAAATAAT
1 TTGGGGAAAATAAT
65200760 TTGGGGAAGAATAACT
1 TTGGGGAA-AATAA-T
65200776 TTGGGGAAA
1 TTGGGGAAA
65200785 TTGGGGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.35
15 6 0.26
16 9 0.39
ACGTcount: A:0.38, C:0.03, G:0.33, T:0.26
Consensus pattern (14 bp):
TTGGGGAAAATAAT
Found at i:65200828 original size:23 final size:23
Alignment explanation
Indices: 65200777--65200836 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
65200767 AGAATAACTT
*
65200777 TGGGGAAATTGGGGGAAAAGAAA
1 TGGGGAAATTGGTGGAAAAGAAA
* *
65200800 TTGGGAAATTGGTGG-AATGAAA
1 TGGGGAAATTGGTGGAAAAGAAA
65200822 TCGGGGAAATCTGGT
1 T-GGGGAAAT-TGGT
65200837 TTGGGGGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 7 0.23
23 20 0.65
24 4 0.13
ACGTcount: A:0.35, C:0.03, G:0.40, T:0.22
Consensus pattern (23 bp):
TGGGGAAATTGGTGGAAAAGAAA
Found at i:65201461 original size:6 final size:6
Alignment explanation
Indices: 65201450--65201483 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
65201440 TTTATGTAAG
65201450 AAAACA AAAACA AAAACA AAAACA AAAACA AAAA
1 AAAACA AAAACA AAAACA AAAACA AAAACA AAAA
65201484 AAATATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACA
Found at i:65201942 original size:22 final size:22
Alignment explanation
Indices: 65201914--65201969 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
65201904 AATTAATTAA
* *
65201914 TCTAAACCCTAAACTCTTAATC
1 TCTAAACCCTAAACCCTAAATC
*
65201936 TCTAAACCTTAAACCCTAAATC
1 TCTAAACCCTAAACCCTAAATC
*
65201958 -CTAAATCCTAAA
1 TCTAAACCCTAAA
65201970 ACATAAACCT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 10 0.34
22 19 0.66
ACGTcount: A:0.41, C:0.30, G:0.00, T:0.29
Consensus pattern (22 bp):
TCTAAACCCTAAACCCTAAATC
Found at i:65201954 original size:14 final size:14
Alignment explanation
Indices: 65201916--65201969 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
65201906 TTAATTAATC
65201916 TAAACCCTAAACTCT
1 TAAACCCTAAAC-CT
* *
65201931 TAATCTCTAAACCT
1 TAAACCCTAAACCT
65201945 TAAACCCTAAATCC-
1 TAAACCCTAAA-CCT
*
65201959 TAAATCCTAAA
1 TAAACCCTAAA
65201970 ACATAAACCT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
14 21 0.64
15 12 0.36
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.28
Consensus pattern (14 bp):
TAAACCCTAAACCT
Found at i:65202027 original size:15 final size:14
Alignment explanation
Indices: 65201975--65202023 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
65201965 CTAAAACATA
*
65201975 AACCTTAACCGA-G
1 AACCTTAACCCATG
65201988 AACCTTAA-CCATG
1 AACCTTAACCCATG
*
65202001 AACCCCTAACCCATG
1 AA-CCTTAACCCATG
65202016 AACCTTAA
1 AACCTTAA
65202024 ACCCCAACCA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 2 0.07
13 11 0.37
14 10 0.33
15 7 0.23
ACGTcount: A:0.39, C:0.35, G:0.08, T:0.18
Consensus pattern (14 bp):
AACCTTAACCCATG
Found at i:65202074 original size:22 final size:22
Alignment explanation
Indices: 65202039--65202108 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
65202029 AACCATTAAA
* *
65202039 CCATAATCCCTAAACCCATAGT
1 CCATAAACCTTAAACCCATAGT
65202061 CCATAAACCTTAAA---ATAGT
1 CCATAAACCTTAAACCCATAGT
*
65202080 AACTCATAAACCTTAAACCCGTA-T
1 --C-CATAAACCTTAAACCCATAGT
65202104 CCATA
1 CCATA
65202109 TGCCCTAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 13
0.71 0.05 0.24
Matches are distributed among these distances:
19 5 0.13
21 5 0.13
22 26 0.67
24 1 0.03
25 2 0.05
ACGTcount: A:0.41, C:0.30, G:0.04, T:0.24
Consensus pattern (22 bp):
CCATAAACCTTAAACCCATAGT
Found at i:65202644 original size:40 final size:41
Alignment explanation
Indices: 65202504--65202690 Score: 259
Period size: 41 Copynumber: 4.6 Consensus size: 41
65202494 GTTATATGAC
* * * *
65202504 TTTTGGCGGCGTTTTGAACAAAAACGCTGCTATTGCTCTGAT
1 TTTTAGCGGCGTTTT-ACCAAAAACGCCGCTATTGCTCTGTT
* * *
65202546 TTTTAGCAGCGTTTTAACAAAAATGCCGCTATTGCTCTGTT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGTT
*
65202587 TTTTAGCGGCGTCTTACCAAAAACGCCGCTATTGCTCTG-T
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGTT
* *
65202627 TTTTAGCGGCATTTTACCAAAAATGCCGCTATTGCTCTGTT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGTT
*
65202668 TTTTAGCGGCGTTTTACTAAAAA
1 TTTTAGCGGCGTTTTACCAAAAA
65202691 TGCTGCTAAT
Statistics
Matches: 130, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
40 37 0.28
41 80 0.62
42 13 0.10
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGTT
Found at i:65202651 original size:81 final size:82
Alignment explanation
Indices: 65202504--65202690 Score: 286
Period size: 81 Copynumber: 2.3 Consensus size: 82
65202494 GTTATATGAC
* * * *
65202504 TTTTGGCGGCGTTTTGAACAAAAACGCTGCTATTGCTCTGATTTTTAGCAGCGTTTTAACAAAAA
1 TTTTAGCGGCGTTTT-ACCAAAAACGCCGCTATTGCTCTGATTTTTAGCAGCATTTTAACAAAAA
65202569 TGCCGCTATTGCTCTGTT
65 TGCCGCTATTGCTCTGTT
* * *
65202587 TTTTAGCGGCGTCTTACCAAAAACGCCGCTATTGCTCTG-TTTTTAGCGGCATTTTACCAAAAAT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGATTTTTAGCAGCATTTTAACAAAAAT
65202651 GCCGCTATTGCTCTGTT
66 GCCGCTATTGCTCTGTT
*
65202668 TTTTAGCGGCGTTTTACTAAAAA
1 TTTTAGCGGCGTTTTACCAAAAA
65202691 TGCTGCTAAT
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
81 60 0.63
82 22 0.23
83 13 0.14
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (82 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGATTTTTAGCAGCATTTTAACAAAAAT
GCCGCTATTGCTCTGTT
Found at i:65202711 original size:41 final size:41
Alignment explanation
Indices: 65202545--65202711 Score: 149
Period size: 41 Copynumber: 4.1 Consensus size: 41
65202535 ATTGCTCTGA
* * * * * *
65202545 TTTTTAGCAGCGTTTTAACAAAAATGCCGCTATTGCTCTGT
1 TTTTTAGCGGCATTTTACCAAAAATGCCGCTAATGCTATAT
* * * * * *
65202586 TTTTTAGCGGCGTCTTACCAAAAACGCCGCTATTGCTCT-G
1 TTTTTAGCGGCATTTTACCAAAAATGCCGCTAATGCTATAT
* * *
65202626 TTTTTAGCGGCATTTTACCAAAAATGCCGCTATTGCTCTGT
1 TTTTTAGCGGCATTTTACCAAAAATGCCGCTAATGCTATAT
* * * *
65202667 TTTTTAGCGGCGTTTTACTAAAAATGCTGCTAATG-TATAA
1 TTTTTAGCGGCATTTTACCAAAAATGCCGCTAATGCTATAT
65202707 TTTTT
1 TTTTT
65202712 CCGGCTTTTT
Statistics
Matches: 109, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
40 43 0.39
41 66 0.61
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (41 bp):
TTTTTAGCGGCATTTTACCAAAAATGCCGCTAATGCTATAT
Found at i:65202944 original size:43 final size:43
Alignment explanation
Indices: 65202879--65202963 Score: 161
Period size: 43 Copynumber: 2.0 Consensus size: 43
65202869 AATGCATTAG
*
65202879 TTTCTTTGGGTATTTTTTAAACCAAAATCGATGGTTCTTGGAA
1 TTTCTTTGGGTATTTTTGAAACCAAAATCGATGGTTCTTGGAA
65202922 TTTCTTTGGGTATTTTTGAAACCAAAATCGATGGTTCTTGGA
1 TTTCTTTGGGTATTTTTGAAACCAAAATCGATGGTTCTTGGA
65202964 GAGAATAGGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.44
Consensus pattern (43 bp):
TTTCTTTGGGTATTTTTGAAACCAAAATCGATGGTTCTTGGAA
Found at i:65219768 original size:40 final size:40
Alignment explanation
Indices: 65219713--65219944 Score: 385
Period size: 40 Copynumber: 5.8 Consensus size: 40
65219703 ATTTTGTCCA
*
65219713 AGCACGAATGC-CTTCGGGGCTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
*
65219752 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
**
65219792 AGCACGAATGCTCTTCGAAACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
65219832 AGCACGAATGCTCTTCGGAACTTACCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
65219872 AGCACGAATGCTCTTCGGGACTTAGCCCGGGTATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
65219912 AGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATA
65219945 TAACATACTG
Statistics
Matches: 180, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 11 0.06
40 169 0.94
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.21
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
Found at i:65221904 original size:49 final size:49
Alignment explanation
Indices: 65221792--65222249 Score: 832
Period size: 49 Copynumber: 9.4 Consensus size: 49
65221782 TATCACAGTT
* * * *
65221792 ATACACTTCCAC-TTCTATCCCATTGACCATTCGGCCTTAT--CATATAT
1 ATACACTTTCACATTC-ATCACATTGGCCATTCGGCCTTATCACATATAC
*
65221839 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
65221888 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
65221937 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
65221986 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
65222035 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
65222084 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
65222133 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
65222182 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
65222231 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
65222250 GTAACAAAAT
Statistics
Matches: 401, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
47 32 0.08
48 3 0.01
49 366 0.91
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
Found at i:65227756 original size:3 final size:3
Alignment explanation
Indices: 65227722--65227874 Score: 256
Period size: 3 Copynumber: 51.3 Consensus size: 3
65227712 AGAAAATATG
* * *
65227722 ATA ATG ATA TTA ATA AT- ATA ATA GTGA A-A ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
65227766 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
65227814 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
65227862 ATA ATA ATA ATA A
1 ATA ATA ATA ATA A
65227875 GAGGATTAAT
Statistics
Matches: 141, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
2 4 0.03
3 136 0.96
4 1 0.01
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:65228872 original size:14 final size:15
Alignment explanation
Indices: 65228855--65228887 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
65228845 TGCTTCTTTT
*
65228855 TTTGTTTTTTCTTC-
1 TTTGTTTCTTCTTCG
65228869 TTTGTTTCTTCTTCG
1 TTTGTTTCTTCTTCG
65228884 TTTG
1 TTTG
65228888 CGTGTTGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.00, C:0.15, G:0.12, T:0.73
Consensus pattern (15 bp):
TTTGTTTCTTCTTCG
Found at i:65229488 original size:45 final size:45
Alignment explanation
Indices: 65229419--65229849 Score: 252
Period size: 45 Copynumber: 9.6 Consensus size: 45
65229409 ATAGTTTGAT
* * * ** **
65229419 CTGCTCCATTGCAACTTCAAGGAGATAAGATCTACTTTCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATCTAGTAACTTCAAC
* *
65229464 TTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGTAACTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATCTAGTAACTTCAAC
* * * *
65229508 TTGCCCCACTGCAACTTCAGAGG-GATAAGAACTGGTAACTTCAAC
1 CTGCTCCACTGCAACTTCAG-GGAGATAAGATCTAGTAACTTCAAC
* * * ** *
65229553 CTGCCCCACTGCAACTTCAGGGGGATAAGATTTA-TAGTTTTAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATCTAGTAACTTCAAC
* * * * *
65229597 TCTGCTCTACTGCAACTTCAGAGAGATAAGAT-TTGCTATCTTCAAT
1 -CTGCTCCACTGCAACTTCAGGGAGATAAGATCTAG-TAACTTCAAC
* ** * * * * * *
65229643 CGGCTTTACTGCAACTTTAAGGAGATAGGA-CTCGTAAATTCTAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATCTAGTAACTTCAAC
* * * * * * *
65229687 CTAC-CTCACTGCCACTTCAGGGGGATAAGGTTTA-TAGCTTTAAC
1 CTGCTC-CACTGCAACTTCAGGGAGATAAGATCTAGTAACTTCAAC
* * * * * **
65229731 TCTGCTCTACTGCAATTTCAGAGAGATAAGAT-TTGCTATCTTCAGT
1 -CTGCTCCACTGCAACTTCAGGGAGATAAGATCTAG-TAACTTCAAC
* * * *
65229777 TTTCTCCATTACAACTTCAGGGAGATAAGA-C-ATGTAACTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATCTA-GTAACTTCAAC
* *
65229821 CTGCTTCACTGCAACTTTAGGGAGATAAG
1 CTGCTCCACTGCAACTTCAGGGAGATAAG
65229850 GTTTGTGGCT
Statistics
Matches: 288, Mismatches: 83, Indels: 31
0.72 0.21 0.08
Matches are distributed among these distances:
44 106 0.37
45 169 0.59
46 13 0.05
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (45 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGATCTAGTAACTTCAAC
Found at i:65229801 original size:134 final size:133
Alignment explanation
Indices: 65229465--65229853 Score: 458
Period size: 134 Copynumber: 2.9 Consensus size: 133
65229455 TTCTTCAGTT
* * * * * *
65229465 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCAACTTGCCCCACTGCAACTTCAGA
1 TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATTTGCTCCACTGCAACTTCAG-
* * * *
65229529 GG-GATAAGAACTGGTAACTTCAACCTGCCCCACTGCAACTTCAGGGGGATAAGATTTATAGTTT
65 GGAGAT-AGGACT-GTAACTTCAACCTGCCTCACTGCAACTTCAGGGGGATAAGGTTTATAGCTT
65229593 TAACTC
128 TAACTC
** ** * *
65229599 TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCGGCTTTACTGCAACTTTAAG
1 TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATTTGCTCCACTGCAACTTCAGG
* * * *
65229664 GAGATAGGACTCGTAAATTCTACCTACCTCACTGCCACTTCAGGGGGATAAGGTTTATAGCTTTA
66 GAGATAGGACT-GTAACTTCAACCTGCCTCACTGCAACTTCAGGGGGATAAGGTTTATAGCTTTA
65229729 ACTC
130 ACTC
* * * * *
65229733 TGCTCTACTGCAATTTCAGAGAGATAAGATTTGCTATCTTCAGTTTTCTCCATTACAACTTCAGG
1 TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATTTGCTCCACTGCAACTTCAGG
* * * *
65229798 GAGATAAGACATGTAACTTCAACCTGCTTCACTGCAACTTTAGGGAGATAAGGTTT
66 GAGATAGGAC-TGTAACTTCAACCTGCCTCACTGCAACTTCAGGGGGATAAGGTTT
65229854 GTGGCTTCAA
Statistics
Matches: 212, Mismatches: 40, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
134 187 0.88
135 25 0.12
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (133 bp):
TGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATTTGCTCCACTGCAACTTCAGG
GAGATAGGACTGTAACTTCAACCTGCCTCACTGCAACTTCAGGGGGATAAGGTTTATAGCTTTAA
CTC
Found at i:65229984 original size:88 final size:87
Alignment explanation
Indices: 65229852--65230700 Score: 1076
Period size: 88 Copynumber: 9.7 Consensus size: 87
65229842 GAGATAAGGT
* * * * *
65229852 TTGTGGCTTCAATC-GCTCCAATGCTATTTCAGGGAGAAGAGATTTGTAGCTGCGATCTACTCCG
1 TTGTGGCTTCGAGCTGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
*
65229916 CTAGAACTTCAAAGAGATACGAA
66 CT-GAACTTCAAGGAGATACGAA
* * * *
65229939 TTGTGGCTTCGA-CATGCTCCAGTGTCATTTTAGGGAGAAGAGATTTATAGCTTCGATCTACTCT
1 TTGTGGCTTCGAGC-TGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCC
65230003 GCTGGAACTTCAAGGAGATACGAA
65 GCT-GAACTTCAAGGAGATACGAA
*
65230027 TTGTGGCTTCGAG-TCGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCC
1 TTGTGGCTTCGAGCT-GCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCC
**
65230091 GCTGAAACTTCAAATAGATACGAA
65 GCTG-AACTTCAAGGAGATACGAA
* * *** * *
65230115 TTATGGCTTTGAGCCATTCCAGTGCCATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTG
1 TTGTGGCTTCGAGCTGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
*
65230180 CTGAAACTTTAAGGAGATACGAA
66 CTG-AACTTCAAGGAGATACGAA
* * * * * *
65230203 TTATGGCTTCAAGCCGCTCCAATTCCATTCCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
1 TTGTGGCTTCGAGCTGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
* * *
65230268 CTAAAACTTTAAGGAGATACAAA
66 CT-GAACTTCAAGGAGATACGAA
* * * * *
65230291 TTGTGGCTTCGAGCCGTTCTAGTGCCATTTCAGGGAAAAGAGATCTGTAGCTTCGATCTACTCCG
1 TTGTGGCTTCGAGCTGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
* *
65230356 CTGAACTTTAAGGAGATACAAA
66 CTGAACTTCAAGGAGATACGAA
* * * * **
65230378 TTATGGCTTTGAGCCGCTCCAGTGCCATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTA
1 TTGTGGCTTCGAGCTGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
65230443 CTGAAACTTCAAGGAGATACGAA
66 CTG-AACTTCAAGGAGATACGAA
* * *
65230466 TTGTGGCTTCGAGCTGCTTCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTGCGGTCTACTCCG
1 TTGTGGCTTCGAGCTGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
*
65230531 CTAGAACTTCAAAGAGATACGAA
66 CT-GAACTTCAAGGAGATACGAA
* **
65230554 TTGTGGCTTCGAGCTGCTCCAGTGCCATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTA
1 TTGTGGCTTCGAGCTGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
65230619 CTGGAACTTCAAGGAGATACGAA
66 CT-GAACTTCAAGGAGATACGAA
* * * **
65230642 TTGTGGCTTCAAG-TCGCTCAAATGTTATTTCAGGGAGAAGAGATTTGTAGCTTCGATCT
1 TTGTGGCTTCGAGCT-GCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCT
65230701 CCCAAATTCG
Statistics
Matches: 668, Mismatches: 84, Indels: 19
0.87 0.11 0.02
Matches are distributed among these distances:
86 1 0.00
87 92 0.14
88 574 0.86
89 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (87 bp):
TTGTGGCTTCGAGCTGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
CTGAACTTCAAGGAGATACGAA
Found at i:65230020 original size:44 final size:44
Alignment explanation
Indices: 65229879--65230635 Score: 197
Period size: 44 Copynumber: 17.2 Consensus size: 44
65229869 CCAATGCTAT
* *
65229879 TTCAGGGAGAAGAGATTTGTAGCTGCGATCTACTCCGCT-AGAAC
1 TTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGA-AAC
* * * ** *
65229923 TTCAAAGAGATACGA-A-TTGTGGCTTCGA-CATGCTCCAG-TGTCAT
1 TTCAAGGAGA-A-GAGATTTGTAGCTTCGATC-TACTCC-GCTGAAAC
* * * * *
65229967 TTTAGGGAGAAGAGATTTATAGCTTCGATCTACTCTGCTGGAAC
1 TTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAAC
* * ** ** *
65230011 TTCAAGGAGATACGA-A-TTGTGGCTTCGAGTC-GCTCCAATGCCAT
1 TTCAAGGAGA-A-GAGATTTGTAGCTTCGA-TCTACTCCGCTGAAAC
*
65230055 TTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAAC
1 TTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAAC
** * * * * ** *
65230099 TTCAAATAGATACGA-ATTATG--GCTTTGAGCCATTCCAG-TGCCAT
1 TTCAAGGAGA-A-GAGATT-TGTAGCTTCGATCTACTCC-GCTGAAAC
* * *
65230143 TTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTGCTGAAAC
1 TTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAAC
* * * ** ** ***
65230187 TTTAAGGAGATACGA-ATTATG--GCTTCAAGCCGCTCCAATTCCA-
1 TTCAAGGAGA-A-GAGATT-TGTAGCTTCGATCTACTCCGCTGAAAC
* *
65230230 TTCCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTAAAAC
1 TT-CAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAAC
* * * * * * * ** *
65230275 TTTAAGGAGATACA-AATTGTGGCTTCGAGCCGTTCT-AG-TGCCAT
1 TTCAAGGAGA-AGAGATTTGTAGCTTCGA-TC-TACTCCGCTGAAAC
* * *
65230319 TTCAGGGAAAAGAGATCTGTAGCTTCGATCTACTCCGCTG-AAC
1 TTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAAC
* * * * * ** ** *
65230362 TTTAAGGAGATACAAATTATG--GCTTTGAGCCGCTCCAG-TGCCAT
1 TTCAAGGAGA-AGAGATT-TGTAGCTTCGATCTACTCC-GCTGAAAC
* * **
65230406 TTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTACTGAAAC
1 TTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAAC
* * * * ** *
65230450 TTCAAGGAGATACGA-A-TTGTGGCTTCGAGCTGCTTCAG-TGCCAT
1 TTCAAGGAGA-A-GAGATTTGTAGCTTCGATCTAC-TCCGCTGAAAC
* * *
65230494 TTCAGGGAGAAGAGATTTGTAGCTGCGGTCTACTCCGCT-AGAAC
1 TTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGA-AAC
* * * * ** *
65230538 TTCAAAGAGATACGA-A-TTGTGGCTTCGAGCTGCTCCAG-TGCCAT
1 TTCAAGGAGA-A-GAGATTTGTAGCTTCGATCTACTCC-GCTGAAAC
* * ** *
65230582 TTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTACTGGAAC
1 TTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAAC
65230626 TTCAAGGAGA
1 TTCAAGGAGA
65230636 TACGAATTGT
Statistics
Matches: 483, Mismatches: 172, Indels: 116
0.63 0.22 0.15
Matches are distributed among these distances:
42 21 0.04
43 56 0.12
44 355 0.73
45 32 0.07
46 19 0.04
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (44 bp):
TTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGAAAC
Found at i:65230612 original size:439 final size:440
Alignment explanation
Indices: 65229877--65230700 Score: 1298
Period size: 439 Copynumber: 1.9 Consensus size: 440
65229867 CTCCAATGCT
* * * *
65229877 ATTTCAGGGAGAAGAGATTTGTAGCTGCGATCTACTCCGCTAGAACTTCAAAGAGATACGAATTG
1 ATTTCAGGGAAAAGAGATCTGTAGCTGCGATCTACTCCGCTAGAACTTCAAAGAGATACAAATTA
* * *
65229942 TGGCTTCGACATGCTCCAGTGTCATTTTAGGGAGAAGAGATTTATAGCTTCGATCTACTCTGCTG
66 TGGCTTCGACACGCTCCAGTGCCATTTTAGGGAGAAGAGATTTATAGCTTCGATCTACTCTACTG
*
65230007 GAACTTCAAGGAGATACGAATTGTGGCTTCGAGTCGCTCCAATGCCATTTCAGGGAGAAGAGATT
131 AAACTTCAAGGAGATACGAATTGTGGCTTCGAGTCGCTCCAATGCCATTTCAGGGAGAAGAGATT
* * * *
65230072 TGTAGCTTCGATCTACTCCGCTGAAACTTCAAATAGATACGAATTATGGCTTTGAGCCATTCCAG
196 TGTAGCTGCGATCTACTCCGCTGAAACTTCAAAGAGATACGAATTATGGCTTCGAGCCACTCCAG
* *
65230137 TGCCATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTGCTGAAACTTTAAGGAGATACGA
261 TGCCATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTACTGAAACTTCAAGGAGATACGA
*
65230202 ATTATGGCTTCAAGCCGCTCCAAT-TCCATTCCAGGGAGAAGAGATTTGTAGCTTCGATCTACTC
326 ATTATGGCTTCAAGCCGCTCAAATGT-CATTCCAGGGAGAAGAGATTTGTAGCTTCGATCTACTC
65230266 CGCTAAAACTTTAAGGAGATACAAATTGTGGCTTCGAGCCGTTCTAGTGCC
390 CGCTAAAACTTTAAGGAGATACAAATTGTGGCTTCGAGCCGTTCTAGTGCC
* * *
65230317 ATTTCAGGGAAAAGAGATCTGTAGCTTCGATCTACTCCGCT-GAACTTTAAGGAGATACAAATTA
1 ATTTCAGGGAAAAGAGATCTGTAGCTGCGATCTACTCCGCTAGAACTTCAAAGAGATACAAATTA
* *
65230381 TGGCTTTGAGC-CGCTCCAGTGCCATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTACT
66 TGGCTTCGA-CACGCTCCAGTGCCATTTTAGGGAGAAGAGATTTATAGCTTCGATCTACTCTACT
* *
65230445 GAAACTTCAAGGAGATACGAATTGTGGCTTCGAG-CTGCTTCAGTGCCATTTCAGGGAGAAGAGA
130 GAAACTTCAAGGAGATACGAATTGTGGCTTCGAGTC-GCTCCAATGCCATTTCAGGGAGAAGAGA
* * **
65230509 TTTGTAGCTGCGGTCTACTCCGCT-AGAACTTCAAAGAGATACGAATTGTGGCTTCGAGCTGCTC
194 TTTGTAGCTGCGATCTACTCCGCTGA-AACTTCAAAGAGATACGAATTATGGCTTCGAGCCACTC
*
65230573 CAGTGCCATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTACTGGAACTTCAAGGAGATA
258 CAGTGCCATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTACTGAAACTTCAAGGAGATA
* * * *
65230638 CGAATTGTGGCTTCAAGTCGCTCAAATGTTATTTCAGGGAGAAGAGATTTGTAGCTTCGATCT
323 CGAATTATGGCTTCAAGCCGCTCAAATGTCATTCCAGGGAGAAGAGATTTGTAGCTTCGATCT
65230701 CCCAAATTCG
Statistics
Matches: 349, Mismatches: 31, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
438 2 0.01
439 307 0.88
440 40 0.11
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (440 bp):
ATTTCAGGGAAAAGAGATCTGTAGCTGCGATCTACTCCGCTAGAACTTCAAAGAGATACAAATTA
TGGCTTCGACACGCTCCAGTGCCATTTTAGGGAGAAGAGATTTATAGCTTCGATCTACTCTACTG
AAACTTCAAGGAGATACGAATTGTGGCTTCGAGTCGCTCCAATGCCATTTCAGGGAGAAGAGATT
TGTAGCTGCGATCTACTCCGCTGAAACTTCAAAGAGATACGAATTATGGCTTCGAGCCACTCCAG
TGCCATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTACTGAAACTTCAAGGAGATACGA
ATTATGGCTTCAAGCCGCTCAAATGTCATTCCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCC
GCTAAAACTTTAAGGAGATACAAATTGTGGCTTCGAGCCGTTCTAGTGCC
Found at i:65243673 original size:24 final size:24
Alignment explanation
Indices: 65243641--65243700 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
65243631 TTTTTTCAAT
65243641 TCTGTTCTTGTTTTCCCTTGCAAA
1 TCTGTTCTTGTTTTCCCTTGCAAA
*
65243665 TCTGTTCTTATTTTCCCTTGCAAA
1 TCTGTTCTTGTTTTCCCTTGCAAA
65243689 TCTGTT-TTGTTT
1 TCTGTTCTTGTTT
65243701 CTTCCACAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
23 5 0.15
24 29 0.85
ACGTcount: A:0.12, C:0.22, G:0.12, T:0.55
Consensus pattern (24 bp):
TCTGTTCTTGTTTTCCCTTGCAAA
Found at i:65255050 original size:3 final size:3
Alignment explanation
Indices: 65255044--65255077 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
65255034 TACTACTATC
65255044 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
65255078 NNNNNNNNNN
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:65258518 original size:3 final size:3
Alignment explanation
Indices: 65258512--65258901 Score: 178
Period size: 3 Copynumber: 127.7 Consensus size: 3
65258502 ACTGTTCACT
* * * *
65258512 TTA TTA TTA TTA GTA TTA TTA TTA GTA TTA TTA TTTA TTA TCA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * * * * * * *
65258558 TTA TTA TTA TCA TTG TTA CTG TTT TTA TTT TTA TTA CTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
65258606 TTA TTT TTA TTT TTCG TGTA TATA TTA TTA TT- TATA TTA TTG TTA TTA
1 TTA TTA TTA TTA TT-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA
* * * * * * * *
65258654 TTA CTA TTA TTA ATA TTA TTA ATA ATC TTA TTA TTA CTG TTA TTT TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
65258702 TTCC TT- TTA TTA TTG TTCA TTA TCA ATA -TA TTA TTA TTA TTA TTA
1 TT-A TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
65258747 TTA TTA TTA TTA TTA TTA TTTA CATG TTA TTA TCTC TTT TTC TTT TTA
1 TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA T-TA TTA TTA TTA TTA
* * * * * * * * *
65258795 TTA CGTTC TTA TTA CTA TTA TTA CTA TTT TTA TTG CTA GTA TCA TTT
1 TTA --TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
65258842 TTA TT- TTA TTA TCA TTA TCA TTT TTG TAA TTA TTA TTA CTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
65258888 TTT TTA TTT TTA TT
1 TTA TTA TTA TTA TT
65258902 TAACATACTA
Statistics
Matches: 279, Mismatches: 93, Indels: 30
0.69 0.23 0.07
Matches are distributed among these distances:
2 9 0.03
3 248 0.89
4 19 0.07
5 3 0.01
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:65259017 original size:15 final size:15
Alignment explanation
Indices: 65258999--65259033 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
65258989 TTACCCTTGG
*
65258999 TATTATTTTTGTTAC
1 TATTATTTTTATTAC
65259014 TATTATTTTTATTAC
1 TATTATTTTTATTAC
65259029 TATTA
1 TATTA
65259034 CTACCATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.66
Consensus pattern (15 bp):
TATTATTTTTATTAC
Found at i:65260587 original size:23 final size:23
Alignment explanation
Indices: 65260557--65260602 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
65260547 TCGGTCCATA
65260557 TGAACCTATAATGGGTGAGGATT
1 TGAACCTATAATGGGTGAGGATT
65260580 TGAACCTATAATGGGTGAGGATT
1 TGAACCTATAATGGGTGAGGATT
65260603 GAGGAATCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.30
Consensus pattern (23 bp):
TGAACCTATAATGGGTGAGGATT
Found at i:65264071 original size:34 final size:35
Alignment explanation
Indices: 65264020--65264091 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
65264010 ATTCTATAGT
*
65264020 TAGGGTAATACTGAAACTGTAGAA-ACTGAGACAG
1 TAGGGTAAAACTGAAACTGTAGAAGACTGAGACAG
* *
65264054 TAGGG-AAAACTGAAAACTTTAGAAGACTGAGACTG
1 TAGGGTAAAACTG-AAACTGTAGAAGACTGAGACAG
65264089 TAG
1 TAG
65264092 CTAGGATACG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 6 0.18
34 15 0.45
35 12 0.36
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (35 bp):
TAGGGTAAAACTGAAACTGTAGAAGACTGAGACAG
Found at i:65266877 original size:20 final size:21
Alignment explanation
Indices: 65266834--65266879 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
65266824 GCTGTTTTGT
65266834 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
65266854 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
65266873 TATGGGC
1 TATGGGC
65266880 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:65277905 original size:64 final size:64
Alignment explanation
Indices: 65277830--65277957 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
65277820 TTATTCATAA
*
65277830 CACATATAGTTAGGAGCATTGGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATATAGTTAGGAGCATTGGATTCATTTCGATCATAACATCCTAATTATTTGACATAAGCAT
* * * *
65277894 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAATATCCTAATTATTTGGCATAAGCAT
1 CACATATAGTTAGGAGCATTGGATTCATTTCGATCATAACATCCTAATTATTTGACATAAGCAT
65277958 AGATACATGA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (64 bp):
CACATATAGTTAGGAGCATTGGATTCATTTCGATCATAACATCCTAATTATTTGACATAAGCAT
Found at i:65278126 original size:88 final size:88
Alignment explanation
Indices: 65278025--65278825 Score: 824
Period size: 88 Copynumber: 9.0 Consensus size: 88
65278015 GTGAATTCAC
* *
65278025 GAGCCTTTACCCCCTAAGCAGTAGGGT-ACAGGCTGAAAGATTACAGATCTTATCTTCCTAAGCA
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAA-ATTACAGATCTTATCTCCCTAAGCA
*
65278089 GCAGTGGAGCAGATCGAAAACGGT
65 GTAGTGGAGCAGATCGAAAACGGT
* * * * *
65278113 TAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACCGATCTTGTCTCCCTAAGTAG
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAG
* *
65278178 TAGTGGAACAGATCGAAGACGGT
66 TAGTGGAGCAGATCGAAAACGGT
* * *
65278201 GAGCCTTAACCCCCTAAGCAGTAAGCAGTAAGGTAACAGGC-AAAAATTACCGATCTTGTCTCCC
1 GAGCCTTAACCCCCTAAGCAGT----AG---GGTAACAGGCTGAAAATTACAGATCTTATCTCCC
* *
65278265 TAAGTAGTAGTGGAGCAGATCGAAGACGGT
59 TAAGCAGTAGTGGAGCAGATCGAAAACGGT
* * * * * *
65278295 GAGCCTTAACCCCCTAAGTAGTAGGATAATAGGCTAAAAATTTCAGATCTTATCTCCCTAAGCAA
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAG
**
65278360 TAGTGGAGCAGATC-AAAGATAGT
66 TAGTGGAGCAGATCGAAA-ACGGT
* * * * * *
65278383 AAGCCTTAAACCTCTAAGCAGTAGGGTAACAGGCTGAAAATTACCGATCTTGTCTCCCTAAACAG
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAG
*
65278448 TAGTAGAGCAGATC-AAAGACGGT
66 TAGTGGAGCAGATCGAAA-ACGGT
* * * * * **
65278471 GAGCCTTAACCCCCTAAGTAGTAGGGTAATAGGCTGAAGATTATAGATCTTATCACTTTAAGCAG
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAG
* **
65278536 TAGGGGAAAAGATCGAAGAA-GGT
66 TAGTGGAGCAGATCGAA-AACGGT
* * * *
65278559 GAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCT-AGAAATTACAGATCTTGTCTCCCCAAGTA
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGA-AAATTACAGATCTTATCTCCCTAAGCA
** * * **
65278623 GTAGCAGAGTAGATCGAAGATAGT
65 GTAGTGGAGCAGATCGAAAACGGT
* * * * *
65278647 AAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAATTTCAGATCTTACCTCCCTAAGCAA
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAG
*
65278712 TAGTGGAGTAGATC-AAATACGGT
66 TAGTGGAGCAGATCGAAA-ACGGT
* * * * * * * *
65278735 TAGCCTTAACTCCCTAAGCAGTAGGGTAACAGTCTGGAGATTACAGATCCTATCACCCTAAACAG
1 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAG
* * * *
65278800 TAGGGGAACAGATCGAAGACAGT
66 TAGTGGAGCAGATCGAAAACGGT
65278823 GAG
1 GAG
65278826 TATTATTTTT
Statistics
Matches: 596, Mismatches: 100, Indels: 34
0.82 0.14 0.05
Matches are distributed among these distances:
87 14 0.02
88 479 0.80
89 15 0.03
90 3 0.01
92 2 0.00
94 73 0.12
95 10 0.02
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (88 bp):
GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAAACGGT
Found at i:65278669 original size:264 final size:264
Alignment explanation
Indices: 65278025--65278818 Score: 964
Period size: 264 Copynumber: 3.0 Consensus size: 264
65278015 GTGAATTCAC
* * *
65278025 GAGCCTTTACCCCCTAAGCAGTAGGGT-ACAGGCT-GAAAGATTACAGATCTTATCTTCCTAAGC
1 GAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAG-AA-ATTACAGATCTTATCTCCCTAAGC
* * ** * *
65278088 AGCAGTGGAGCAGATCGAAAACGGTTAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAA
64 AGTAGTGGAGCAGATCGAAGATAGTAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAA
* * *
65278153 TTACCGATCTTGTCTCCCTAAGTAGTAGTGGAACAGATCGAAGACGGTGAGCCTTAACCCCCTAA
129 TTACCGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCT-A
* * * * * * * * *
65278218 GCAGTAAGCAGTAAGGTAACAGGC-AAAAATTACCGATCTTGTCTCCCTAAGTAGTAGTGGAGCA
193 --AGT----AGTAGGGTAACAGGCTGAAGATTACAGATCTTATCACCCTAAGCAGTAGGGGAACA
*
65278282 GATCGAAGACGGT
252 GATCGAAGAAGGT
* * * * *
65278295 GAGCCTTAACCCCCTAAGTAGTAGGATAATAGGCTAAAAATTTCAGATCTTATCTCCCTAAGCAA
1 GAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAG
* * *
65278360 TAGTGGAGCAGATCAAAGATAGTAAGCCTTAAACCTCTAAGCAGTAGGGTAACAGGCTGAAAATT
66 TAGTGGAGCAGATCGAAGATAGTAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATT
* *
65278425 ACCGATCTTGTCTCCCTAAACAGTAGTAGAGCAGATCAAAGACGGTGAGCCTTAACCCCCTAAGT
131 ACCGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCTAAGT
* * ** *
65278490 AGTAGGGTAATAGGCTGAAGATTATAGATCTTATCACTTTAAGCAGTAGGGGAAAAGATCGAAGA
196 AGTAGGGTAACAGGCTGAAGATTACAGATCTTATCACCCTAAGCAGTAGGGGAACAGATCGAAGA
65278555 AGGT
261 AGGT
* * *
65278559 GAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAGAAATTACAGATCTTGTCTCCCCAAGTAG
1 GAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAG
** * *
65278624 TAGCAGAGTAGATCGAAGATAGTAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAATT
66 TAGTGGAGCAGATCGAAGATAGTAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATT
* * ** * * * * * *
65278689 TCAGATCTTACCTCCCTAAGCAATAGTGGAGTAGATCAAATACGGTTAGCCTTAACTCCCTAAGC
131 ACCGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCTAAGT
* * * *
65278754 AGTAGGGTAACAGTCTGGAGATTACAGATCCTATCACCCTAAACAGTAGGGGAACAGATCGAAGA
196 AGTAGGGTAACAGGCTGAAGATTACAGATCTTATCACCCTAAGCAGTAGGGGAACAGATCGAAGA
65278819 CAGTGAGTAT
Statistics
Matches: 448, Mismatches: 73, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
263 13 0.03
264 264 0.59
267 3 0.01
269 1 0.00
270 159 0.35
271 8 0.02
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (264 bp):
GAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGATAGTAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATT
ACCGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCTAAGT
AGTAGGGTAACAGGCTGAAGATTACAGATCTTATCACCCTAAGCAGTAGGGGAACAGATCGAAGA
AGGT
Found at i:65278846 original size:15 final size:15
Alignment explanation
Indices: 65278826--65278860 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
65278816 AGACAGTGAG
* *
65278826 TATTATTTTTTTTAC
1 TATTATTTCTATTAC
65278841 TATTATTTCTATTAC
1 TATTATTTCTATTAC
65278856 TATTA
1 TATTA
65278861 CTACTATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (15 bp):
TATTATTTCTATTAC
Found at i:65281124 original size:18 final size:17
Alignment explanation
Indices: 65281081--65281136 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
65281071 ATAATATTAT
*
65281081 TTAAATTATTATTTAATT
1 TTAAA-TATTATTTAATA
**
65281099 TTTTATATTATTTTAATA
1 TTAAATATTA-TTTAATA
*
65281117 TTAAATATT-TTTAAAA
1 TTAAATATTATTTAATA
65281133 TTAA
1 TTAA
65281137 NNNNNNNNNN
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
16 10 0.32
17 5 0.16
18 16 0.52
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTAAATATTATTTAATA
Found at i:65292931 original size:76 final size:76
Alignment explanation
Indices: 65292837--65292977 Score: 228
Period size: 76 Copynumber: 1.9 Consensus size: 76
65292827 TGATGTTTTA
* * *
65292837 TTTCAAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAAGTATTGTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTATTGTCAA
65292902 TTTTTCGTATG
66 TTTTTCGTATG
* * *
65292913 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTATTGTCAA
65292978 AAAAATCAAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 59 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (76 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTATTGTCAA
TTTTTCGTATG
Found at i:65293006 original size:61 final size:61
Alignment explanation
Indices: 65292917--65293099 Score: 348
Period size: 61 Copynumber: 3.0 Consensus size: 61
65292907 CGTATGTTTC
65292917 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAA
65292978 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAA
* *
65293039 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAA
65293100 TTTCTGTTGT
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 120 1.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (61 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAA
Found at i:65293305 original size:165 final size:165
Alignment explanation
Indices: 65293033--65293727 Score: 707
Period size: 165 Copynumber: 4.3 Consensus size: 165
65293023 GCTGAGGTAT
* * *
65293033 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCCGAGGTAATTTC
*
65293098 AATTTCTGTTGTCAAAAAAATCAACTCGTATTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCC
66 AATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
* *
65293163 GAGGTATTTTCAATTTCCGTTTTTCAATTTTTGGC
131 GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
*
65293198 TTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACATGCCGAGGTAATTTC
1 TTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCCGAGGTAATTTC
*
65293263 AATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCATACGCC
66 AATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
* *
65293328 AAGGTATTTTCAATTTTCGTTTTTCAATTTCTGCC
131 GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
* ** *
65293363 TTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACGCGCTGAACTATT
1 TTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG-ACACGC-C-GAGGTAAT
* * * * *
65293427 TTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
63 TTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCAC
* * ** *
65293492 ACACGGAGGTATTTT---TTT-C-AATTT--ATAT-T---
126 ACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
* *
65293521 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCA-GATCACACACGGAGGTAT
1 TTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTT-AGGA-CACGC-C-GAGGTA-
* * * * * * *
65293582 TTTTTTCAATTTATATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGAG
61 --ATTTCAATTTCT-GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAG-G
*** ** * * * **
65293644 TCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAG--
122 TCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
*
65293686 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
1 TTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTT
65293728 GAGTCACATA
Statistics
Matches: 457, Mismatches: 50, Indels: 45
0.83 0.09 0.08
Matches are distributed among these distances:
155 4 0.01
156 95 0.21
158 4 0.01
159 16 0.04
160 1 0.00
161 4 0.01
162 3 0.01
163 2 0.00
164 5 0.01
165 242 0.53
166 7 0.02
167 17 0.04
168 3 0.01
169 54 0.12
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (165 bp):
TTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCCGAGGTAATTTC
AATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
Found at i:65293308 original size:74 final size:75
Alignment explanation
Indices: 65293200--65293343 Score: 209
Period size: 74 Copynumber: 1.9 Consensus size: 75
65293190 TTTTTGGCTT
* * * *
65293200 TCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACAT-GCCGAGGTAATTTCA
1 TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACATAGCCAAGGTAATTTCA
65293264 ATTTCTGTTG
66 ATTTCTGTTG
* * *
65293274 TCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCATACGCCAAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACATA-GCCAAGGTAATTTC
65293339 AATTT
65 AATTT
65293344 TCGTTTTTCA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
74 44 0.72
76 17 0.28
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (75 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACATAGCCAAGGTAATTTCA
ATTTCTGTTG
Found at i:65293444 original size:91 final size:90
Alignment explanation
Indices: 65293259--65293445 Score: 220
Period size: 91 Copynumber: 2.1 Consensus size: 90
65293249 GCCGAGGTAA
* *
65293259 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCATA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
* *
65293324 CGCCAAGGTATTTTCAATTTTCGTT
66 CGCCAAGCTATTTTCAATTTTCGTC
* * *
65293349 TTTCAATTTCTGCCTT-TCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
1 TTTCAATTTCTG--TTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TC
* *
65293412 ACGCGCTGAA-CTATTTTCAA-TTTCTGTC
63 ACACGC-CAAGCTATTTTCAATTTTC-GTC
65293440 TTTCAA
1 TTTCAA
65293446 AAAAAATCAA
Statistics
Matches: 83, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
90 18 0.22
91 61 0.73
92 4 0.05
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (90 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
CGCCAAGCTATTTTCAATTTTCGTC
Found at i:65293470 original size:78 final size:75
Alignment explanation
Indices: 65293348--65293846 Score: 262
Period size: 78 Copynumber: 6.2 Consensus size: 75
65293338 CAATTTTCGT
* *
65293348 TTTTCAATTTCTGCCTTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG-TCA
*
65293413 CGCGCTGAACTA
65 C-CACTGAACTA
*
65293425 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGAT
1 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT--GGT
* * *
65293489 CACACACGGAGGTATTT
63 CAC-CACTGA---ACTA
* * * *
65293506 TTTTCAATTTATATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT--GGTC
* * *
65293568 ACACACGGAGGTATTT
64 AC-CACTGA---ACTA
* * *
65293584 TTTTCAATTTATATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG-GTCA
* **
65293647 -CATATCGAGGTA
65 CCA-CT-GAACTA
**
65293659 TTTTCAAAATCTG-CTTTTCAAGTTAAGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGTC-TTTC-----AA-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* **
65293723 GCCTTGAGTCA-CATATCGAGGTA
55 GCCTTG-GTCACCA-CT-GAACTA
**
65293746 TTTTCAAAATCTG-CTTTTCAAGTTAAGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGTC-TTTC-----AA-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
65293810 GCCTTGGCTCACGCGCTGAGCTA
55 GCCTTGG-TCAC-CACTGAACTA
65293833 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
65293847 TTTTAATGTC
Statistics
Matches: 368, Mismatches: 27, Indels: 43
0.84 0.06 0.10
Matches are distributed among these distances:
75 14 0.04
76 2 0.01
77 22 0.06
78 160 0.43
79 4 0.01
81 18 0.05
86 1 0.00
87 145 0.39
88 1 0.00
89 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (75 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCAC
CACTGAACTA
Found at i:65293839 original size:87 final size:87
Alignment explanation
Indices: 65293599--65293815 Score: 434
Period size: 87 Copynumber: 2.5 Consensus size: 87
65293589 AATTTATATT
65293599 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTC
65293664 AAAATCTGCTTTTCAAGTTAAG
66 AAAATCTGCTTTTCAAGTTAAG
65293686 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTC
65293751 AAAATCTGCTTTTCAAGTTAAG
66 AAAATCTGCTTTTCAAGTTAAG
65293773 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG
65293816 GCTCACGCGC
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 130 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (87 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGTATTTTC
AAAATCTGCTTTTCAAGTTAAG
Found at i:65295550 original size:41 final size:41
Alignment explanation
Indices: 65295505--65295583 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
65295495 TGTAATACAA
65295505 AAAAGACAACTTATATTAGTAGACAAACCTAAACATATCCT
1 AAAAGACAACTTATATTAGTAGACAAACCTAAACATATCCT
**
65295546 AAAAGACAACTTATATTAGTAGATGAACCTAAACATAT
1 AAAAGACAACTTATATTAGTAGACAAACCTAAACATAT
65295584 ACTTAGTCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.49, C:0.16, G:0.09, T:0.25
Consensus pattern (41 bp):
AAAAGACAACTTATATTAGTAGACAAACCTAAACATATCCT
Found at i:65297692 original size:25 final size:26
Alignment explanation
Indices: 65297655--65297707 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
65297645 TCAAACATGC
65297655 ATTTAGGTCAATTTAACC-CTAGGGGT
1 ATTTAGGTCAATTT-ACCACTAGGGGT
*
65297681 ATTTTGGT-AATTTACCTACTAGGGGT
1 ATTTAGGTCAATTTACC-ACTAGGGGT
65297707 A
1 A
65297708 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 5 0.21
26 16 0.67
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTACCACTAGGGGT
Found at i:65309407 original size:93 final size:93
Alignment explanation
Indices: 65309259--65309430 Score: 215
Period size: 93 Copynumber: 1.8 Consensus size: 93
65309249 AGTGAGAGCC
* * * * *
65309259 AGTGTAAGACCTGTCTGGGATATGACATTGGACTCAAGATATGCAAGCTAGTGTAAGACCTATCT
1 AGTGTAAGACCTGTCTGGGACATGACATTCGACACAAGATATGCAAGCCAATGTAAGACCTATCT
65309324 AGGACATGGCATCGGCTTGAGGTTTGTT
66 AGGACATGGCATCGGCTTGAGGTTTGTT
* *
65309352 AGTGTAAGACCTGTCTGGGACATGGCA-TCGACAC-AGATAAGTG-AGAGCCAATGTAAGACCTG
1 AGTGTAAGACCTGTCTGGGACATGACATTCGACACAAGAT-A-TGCA-AGCCAATGTAAGACCTA
* *
65309414 TTTGGGACATGGCATCG
63 TCTAGGACATGGCATCG
65309431 ACTTAGATAT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
91 4 0.06
92 7 0.10
93 56 0.84
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (93 bp):
AGTGTAAGACCTGTCTGGGACATGACATTCGACACAAGATATGCAAGCCAATGTAAGACCTATCT
AGGACATGGCATCGGCTTGAGGTTTGTT
Found at i:65309420 original size:49 final size:47
Alignment explanation
Indices: 65309354--65309478 Score: 169
Period size: 49 Copynumber: 2.6 Consensus size: 47
65309344 GGTTTGTTAG
*
65309354 TGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAA
1 TGTAAGACCTGTTTGGGACATGGCATCGACACAGAT-A-TGAGAGCCAA
** *
65309403 TGTAAGACCTGTTTGGGACATGGCATCGACTTAGATATGAGAGCCAG
1 TGTAAGACCTGTTTGGGACATGGCATCGACACAGATATGAGAGCCAA
* *
65309450 TGTAAGACTATGTTTGGAACATGGCATCG
1 TGTAAGAC-CTGTTTGGGACATGGCATCG
65309479 GCATCGTACC
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
47 17 0.25
48 19 0.28
49 33 0.48
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
TGTAAGACCTGTTTGGGACATGGCATCGACACAGATATGAGAGCCAA
Found at i:65310652 original size:28 final size:28
Alignment explanation
Indices: 65310584--65310652 Score: 68
Period size: 28 Copynumber: 2.5 Consensus size: 28
65310574 GCACGGGCTG
*
65310584 AGACACGAG-CATGTCGTGGCCGTGTGAG
1 AGACAC-AGCCATGTCGTGGCCGTGTGAA
* * * *
65310612 GGACTCGGGCATGTCGTGGCCGTGTGAA
1 AGACACAGCCATGTCGTGGCCGTGTGAA
*
65310640 AGCCACAGCCATG
1 AGACACAGCCATG
65310653 GACATGGGCG
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.20, C:0.25, G:0.38, T:0.17
Consensus pattern (28 bp):
AGACACAGCCATGTCGTGGCCGTGTGAA
Found at i:65311217 original size:25 final size:25
Alignment explanation
Indices: 65311183--65311230 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
65311173 TTAATTATGG
65311183 ATTAGTGCTTGATTATGGAAGATGA
1 ATTAGTGCTTGATTATGGAAGATGA
65311208 ATTAGTGCTTGATTATGGAAGAT
1 ATTAGTGCTTGATTATGGAAGAT
65311231 TCCACTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.38
Consensus pattern (25 bp):
ATTAGTGCTTGATTATGGAAGATGA
Found at i:65313650 original size:27 final size:27
Alignment explanation
Indices: 65313597--65313722 Score: 126
Period size: 27 Copynumber: 4.7 Consensus size: 27
65313587 GAATCAATCA
* * * **
65313597 CCTTTGTGACATACTTTGTATATATCG
1 CCTTTGTGGCGTACTCTGTATGGATCG
* * *
65313624 TCTTTGTAGCGTACTCTGCATGGATCG
1 CCTTTGTGGCGTACTCTGTATGGATCG
* *
65313651 CCTTTATGGCGTACTCTGTATGGATCA
1 CCTTTGTGGCGTACTCTGTATGGATCG
* *
65313678 CCTTTGTGGCATACTCTATATGGATCG
1 CCTTTGTGGCGTACTCTGTATGGATCG
**
65313705 ATTTTGTGGCGTACTCTG
1 CCTTTGTGGCGTACTCTG
65313723 ATTAGATAGT
Statistics
Matches: 78, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (27 bp):
CCTTTGTGGCGTACTCTGTATGGATCG
Found at i:65313736 original size:27 final size:27
Alignment explanation
Indices: 65313680--65313736 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
65313670 ATGGATCACC
* *
65313680 TTTGTGGCATACTCTATATGGATCGAT
1 TTTGTGGCATACTCTATATAGATAGAT
* *
65313707 TTTGTGGCGTACTCTGAT-TAGATAGTT
1 TTTGTGGCATACTCT-ATATAGATAGAT
65313734 TTT
1 TTT
65313737 TAGTGTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.19, C:0.12, G:0.23, T:0.46
Consensus pattern (27 bp):
TTTGTGGCATACTCTATATAGATAGAT
Found at i:65319227 original size:56 final size:56
Alignment explanation
Indices: 65319141--65319258 Score: 218
Period size: 56 Copynumber: 2.1 Consensus size: 56
65319131 AAGGGATGAT
65319141 GGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCAA
1 GGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCAA
* *
65319197 GGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCAT
1 GGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCAA
65319253 GGGCAA
1 GGGCAA
65319259 TAAACTAATA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.46, C:0.09, G:0.24, T:0.21
Consensus pattern (56 bp):
GGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCAA
Found at i:65320760 original size:47 final size:47
Alignment explanation
Indices: 65320706--65320982 Score: 385
Period size: 47 Copynumber: 5.8 Consensus size: 47
65320696 TATTTGAATA
*
65320706 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65320753 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
65320802 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
65320851 AATGTGAACA-TGTGTATATGAGATAAGGCCGAACGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
65320898 AATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
65320945 GATGTGGAAGTGTATAAATGTGATAAGTCCCGAATGGC
1 AATGTGAAAGTGTATATATGTGATAAG-GCCGAATGGC
65320983 AATTGTGTCA
Statistics
Matches: 208, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
47 109 0.52
48 9 0.04
49 89 0.43
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:65323651 original size:17 final size:17
Alignment explanation
Indices: 65323629--65323689 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
65323619 CACACGGGAA
65323629 TACAAACTAATATATAG
1 TACAAACTAATATATAG
* * * *
65323646 TACAAATTAACTCCTTCAAAA
1 TACAAACTAA-T--AT-ATAG
65323667 TACAAACTAATATATAG
1 TACAAACTAATATATAG
65323684 TACAAA
1 TACAAA
65323690 TACTCTTTCA
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
17 17 0.53
18 2 0.06
20 2 0.06
21 11 0.34
ACGTcount: A:0.52, C:0.16, G:0.03, T:0.28
Consensus pattern (17 bp):
TACAAACTAATATATAG
Found at i:65323700 original size:36 final size:38
Alignment explanation
Indices: 65323627--65323702 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
65323617 TTCACACGGG
65323627 AATACAAACTAATATATAGTACAAATTAACTCCTTCAA
1 AATACAAACTAATATATAGTACAAATTAACTCCTTCAA
*
65323665 AATACAAACTAATATATAGTACAAA-T-ACTCTTTCAA
1 AATACAAACTAATATATAGTACAAATTAACTCCTTCAA
65323701 AA
1 AA
65323703 CAATAAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
36 11 0.30
37 1 0.03
38 25 0.68
ACGTcount: A:0.51, C:0.17, G:0.03, T:0.29
Consensus pattern (38 bp):
AATACAAACTAATATATAGTACAAATTAACTCCTTCAA
Found at i:65323780 original size:21 final size:21
Alignment explanation
Indices: 65323756--65323796 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
65323746 ATGACCCAGA
*
65323756 TTTTCTTAACTAGATATGTGT
1 TTTTCTTAACCAGATATGTGT
* *
65323777 TTTTTTTAACCAGATTTGTG
1 TTTTCTTAACCAGATATGTG
65323797 AGAGTTAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.10, G:0.15, T:0.54
Consensus pattern (21 bp):
TTTTCTTAACCAGATATGTGT
Found at i:65323843 original size:30 final size:29
Alignment explanation
Indices: 65323808--65323866 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
65323798 GAGTTAGATC
*
65323808 AAATTAAAATTTGATGTATAAAATTGCACA
1 AAATTAAAATTT-ATGTATAAAATTACACA
* *
65323838 AAATTAAAGTTTATGTATATAATTACACA
1 AAATTAAAATTTATGTATAAAATTACACA
65323867 CTAAAATCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.36
Consensus pattern (29 bp):
AAATTAAAATTTATGTATAAAATTACACA
Found at i:65324937 original size:97 final size:98
Alignment explanation
Indices: 65324773--65324954 Score: 224
Period size: 98 Copynumber: 1.9 Consensus size: 98
65324763 CAATAATTTC
* * *
65324773 TATTTGAATCCTATAAATTAAATAAACTATAAGATTGATATTCACAAAACAAATGTAATATTAAG
1 TATTTGAATCCTAAAAATCAAATAAACTATAAGATCGATATTCACAAAACAAATGTAATATTAAG
*
65324838 AACTGCAGAAGAATAAATGAAGATGATGGTTTG
66 AACTACAGAAGAATAAATGAAGATGATGGTTTG
* * * * ** *
65324871 TATTTGAA-CTCTAAAAATCAAATCAATTATACGATCGATCTTCAC-AAACACGTGTAATATTGA
1 TATTTGAATC-CTAAAAATCAAATAAACTATAAGATCGATATTCACAAAACAAATGTAATATTAA
* *
65324934 GAACTACATATGAATAAATGA
65 GAACTACAGAAGAATAAATGA
65324955 TGACAATAAT
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
97 34 0.49
98 36 0.51
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.30
Consensus pattern (98 bp):
TATTTGAATCCTAAAAATCAAATAAACTATAAGATCGATATTCACAAAACAAATGTAATATTAAG
AACTACAGAAGAATAAATGAAGATGATGGTTTG
Found at i:65324996 original size:97 final size:97
Alignment explanation
Indices: 65324673--65325036 Score: 265
Period size: 97 Copynumber: 3.8 Consensus size: 97
65324663 CAATAATAAT
** * * * * * *
65324673 TAATTTATATTTGAACACTATAAATTATATAAATTTTGCA-ATTGGT-TTGCACGAACACGTGTA
1 TAATTTATATTTGAATTCTATAAATTAAATAAATTAT-AAGATCGATCTT-CACAAACACGTGTA
* ** *
65324736 ATTTTAAGAACTAC----GAATGCATGATGTCAA
64 ATATTAAGAACTACAGAAGAATAAATGATGACAA
* * * * * **
65324766 TAATTTCTATTTGAATCCTATAAATTAAATAAACTATAAGATTGATATTCACAAAACAAATGTAA
1 TAATTTATATTTGAATTCTATAAATTAAATAAATTATAAGATCGATCTTCAC-AAACACGTGTAA
* * **
65324831 TATTAAGAACTGCAGAAGAATAAATGAAGATGA
65 TATTAAGAACTACAGAAGAATAAATGATGACAA
** * * * * * *
65324864 TGGTTTGTATTTGAACTCTAAAAATCAAATCAATTATACGATCGATCTTCACAAACACGTGTAAT
1 TAATTTATATTTGAATTCTATAAATTAAATAAATTATAAGATCGATCTTCACAAACACGTGTAAT
* * *
65324929 ATTGAGAACTACATATGAATAAATGATGACAA
66 ATTAAGAACTACAGAAGAATAAATGATGACAA
* * * * **
65324961 TAATTTATATTTGAATTTTGTAGATTAAATAAATTATAATATTC-ATCTTTGCAAAGCACGTGTA
1 TAATTTATATTTGAATTCTATAAATTAAATAAATTATAAGA-TCGATCTTCACAAA-CACGTGTA
*
65325025 ATATTAATAACT
64 ATATTAAGAACT
65325037 GTACAAGAAC
Statistics
Matches: 206, Mismatches: 56, Indels: 13
0.75 0.20 0.05
Matches are distributed among these distances:
92 1 0.00
93 39 0.19
94 22 0.11
97 74 0.36
98 70 0.34
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (97 bp):
TAATTTATATTTGAATTCTATAAATTAAATAAATTATAAGATCGATCTTCACAAACACGTGTAAT
ATTAAGAACTACAGAAGAATAAATGATGACAA
Found at i:65333484 original size:13 final size:13
Alignment explanation
Indices: 65333466--65333491 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65333456 GGGATTTGTT
65333466 TTAACTAAACTAA
1 TTAACTAAACTAA
65333479 TTAACTAAACTAA
1 TTAACTAAACTAA
65333492 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:65334396 original size:13 final size:13
Alignment explanation
Indices: 65334378--65334403 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65334368 AACAAATCGA
65334378 ACACGGGCGTGTC
1 ACACGGGCGTGTC
65334391 ACACGGGCGTGTC
1 ACACGGGCGTGTC
65334404 CCTATCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:65342331 original size:16 final size:16
Alignment explanation
Indices: 65342281--65342331 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
65342271 GAGCCTAACA
65342281 ACCCATTCATTGATTT
1 ACCCATTCATTGATTT
* **
65342297 ACCC--TCAAT-ATCA
1 ACCCATTCATTGATTT
65342310 ACCCATTCATTGATTT
1 ACCCATTCATTGATTT
65342326 ACCCAT
1 ACCCAT
65342332 AACTCATTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
13 6 0.23
14 4 0.15
15 4 0.15
16 12 0.46
ACGTcount: A:0.29, C:0.31, G:0.04, T:0.35
Consensus pattern (16 bp):
ACCCATTCATTGATTT
Found at i:65344975 original size:49 final size:49
Alignment explanation
Indices: 65344922--65345020 Score: 112
Period size: 49 Copynumber: 2.0 Consensus size: 49
65344912 AGTCCAGGCC
* *
65344922 GTGTTAGAGCCTGCT-AACACTACACGGGCG-TGTGGTGTACCCGTGTAGG
1 GTGTTAGAGCCTGCTGAACA-GACACGGG-GTTGTGGTCTACCCGTGTAGG
* * * *
65344971 GTGTTCGAGTCTGTTGAATAGACACGGGGTTGTGGTCTACCCGTGTAGG
1 GTGTTAGAGCCTGCTGAACAGACACGGGGTTGTGGTCTACCCGTGTAGG
65345020 G
1 G
65345021 AAGTCCAGGC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
48 1 0.02
49 38 0.90
50 3 0.07
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.27
Consensus pattern (49 bp):
GTGTTAGAGCCTGCTGAACAGACACGGGGTTGTGGTCTACCCGTGTAGG
Found at i:65346343 original size:14 final size:14
Alignment explanation
Indices: 65346324--65346353 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
65346314 ACAACCTAAA
65346324 AATTTTTAATTCTC
1 AATTTTTAATTCTC
65346338 AATTTTTAATTCTC
1 AATTTTTAATTCTC
65346352 AA
1 AA
65346354 AAATCAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.53
Consensus pattern (14 bp):
AATTTTTAATTCTC
Found at i:65348205 original size:48 final size:48
Alignment explanation
Indices: 65348144--65348615 Score: 827
Period size: 48 Copynumber: 9.8 Consensus size: 48
65348134 ATATATGTGC
*
65348144 GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
65348192 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
*
65348240 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
*
65348288 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTTTGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
*
65348336 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTTTAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
*
65348384 GTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
* *
65348432 GCGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
* *
65348480 GCGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
* *
65348528 GCGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
* *
65348576 GCGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
65348616 GTGTGTATAT
Statistics
Matches: 409, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 409 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (48 bp):
GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
Found at i:65355965 original size:13 final size:13
Alignment explanation
Indices: 65355947--65355972 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65355937 GGGATTTGTT
65355947 TTAACTAAACTAA
1 TTAACTAAACTAA
65355960 TTAACTAAACTAA
1 TTAACTAAACTAA
65355973 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:65356873 original size:61 final size:60
Alignment explanation
Indices: 65356805--65356932 Score: 145
Period size: 61 Copynumber: 2.1 Consensus size: 60
65356795 GTGCTTCAAA
* * *
65356805 CCGTGTTAGAGTCTGTTGAATA-GACACG-GCCGTGTGGTCTACCCGTGTAAGG-AAGTCTAGG
1 CCGTGTTAGAGACTGCT-AACACGACACGAG-CGTGTGGTCTACCCGTGT-AGGAAAGTCTA-G
* * *
65356866 CCGTGTTAGAGACTGCTAACACTACACGAGCGTGTGGTGTACCTGTGTAGGAAAGTCTAG
1 CCGTGTTAGAGACTGCTAACACGACACGAGCGTGTGGTCTACCCGTGTAGGAAAGTCTAG
65356926 CCGTGTT
1 CCGTGTT
65356933 GATTTCCCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
60 14 0.24
61 43 0.74
62 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (60 bp):
CCGTGTTAGAGACTGCTAACACGACACGAGCGTGTGGTCTACCCGTGTAGGAAAGTCTAG
Found at i:65359261 original size:34 final size:34
Alignment explanation
Indices: 65359218--65359285 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
65359208 GCATTGCTGA
* *
65359218 CACTGTACTGAGATGGGCTAAGGCCCAA-ACTGT
1 CACTGTACTGAAAAGGGCTAAGGCCCAAGACTGT
*
65359251 CACTGATACTGAAAAGGGCTTAGGCCCAAGACTGT
1 CACTG-TACTGAAAAGGGCTAAGGCCCAAGACTGT
65359286 TCAAATGTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (34 bp):
CACTGTACTGAAAAGGGCTAAGGCCCAAGACTGT
Found at i:65372660 original size:17 final size:16
Alignment explanation
Indices: 65372638--65372671 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
65372628 ATTTTAAATA
*
65372638 TATTTTTTAATTACATT
1 TATTTTTCAATTA-ATT
65372655 TATTTTTCAATTAATT
1 TATTTTTCAATTAATT
65372671 T
1 T
65372672 CAAAAAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTTTCAATTAATT
Found at i:65373528 original size:12 final size:12
Alignment explanation
Indices: 65373513--65373537 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65373503 TATTTTATTA
65373513 ACGTTAATTGCT
1 ACGTTAATTGCT
65373525 ACGTTAATTGCT
1 ACGTTAATTGCT
65373537 A
1 A
65373538 ATATTATTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (12 bp):
ACGTTAATTGCT
Found at i:65374247 original size:194 final size:194
Alignment explanation
Indices: 65373968--65374338 Score: 491
Period size: 194 Copynumber: 1.9 Consensus size: 194
65373958 TAATTTAAAG
*
65373968 AACTACAATGAATGAATAACGACAATAATTTCTATTTGAATCGTATAAATTAAATAAACTATATG
1 AACTACAATGAATGAATAACGACAATAATTTATATTTGAATCGTATAAATTAAATAAACTATATG
**
65374033 ATTGATATTGACAAAACATGTGTAATATTAAGAACTGTATAAGAA-AAATGAAGACGATGGTTTG
66 ATCCATATTGACAAAACATGTGTAATATTAAGAACTGTATAAGAATAAATGAAGACGATGGTTTG
* *
65374097 TATTTGAACTCTAAAAATCAAATCAATTATACAATCTATCTTCACAAACACGAGTAATATTGAT
131 TATTTGAACACTAAAAATCAAATCAATTATACAATCAATCTTCACAAACACGAGTAATATTGAT
* * * *
65374161 AACTACATATGAAT-ACATGACGATAATAATTTATATTTGAATC-TCATAAATTAAATTAATTAT
1 AACTACA-ATGAATGA-ATAACGACAATAATTTATATTTGAATCGT-ATAAATTAAATAAACTAT
* * * * *
65374224 AAT-ATCCATCTTCGA-ACAACATGTGTAATATTAAGAATTGTATAAGAATAAATGAAGGCTATG
63 -ATGATCCATATT-GACAAAACATGTGTAATATTAAGAACTGTATAAGAATAAATGAAGACGATG
* * * * *
65374287 GTTTGTATTTTAACACTAAAACTCAAATCAATTGTCCCATCAATCTTCACAA
126 GTTTGTATTTGAACACTAAAAATCAAATCAATTATACAATCAATCTTCACAA
65374339 CTACATGTAA
Statistics
Matches: 153, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
193 9 0.06
194 83 0.54
195 61 0.40
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.33
Consensus pattern (194 bp):
AACTACAATGAATGAATAACGACAATAATTTATATTTGAATCGTATAAATTAAATAAACTATATG
ATCCATATTGACAAAACATGTGTAATATTAAGAACTGTATAAGAATAAATGAAGACGATGGTTTG
TATTTGAACACTAAAAATCAAATCAATTATACAATCAATCTTCACAAACACGAGTAATATTGAT
Found at i:65374386 original size:195 final size:195
Alignment explanation
Indices: 65373963--65374420 Score: 490
Period size: 195 Copynumber: 2.4 Consensus size: 195
65373953 ACATGTAATT
* *
65373963 TAAAGAACTACA-ATGAATGA-ATA-ACGACAATAATTTCTATTTGAATCGT-ATAAATTAAATA
1 TAAAGAACTACATATGAAT-ACA-AGACGATAATAATTTATATTTGAATC-TCATAAATTAAATA
* **
65374024 AACTAT-ATGATTGATATTGACAAAACATGTGTAATATTAAGAACTGTATAAGAAAAATGAAGAC
63 AATTATAATGATCCATATTGACAAAACATGTGTAATATTAAGAACTGTATAAGAAAAATGAAGAC
* *
65374088 GATGGTTTGTATTTGAACTCTAAAAATCAAATCAATTATACAATCTATCTTCACAAACACGAGTA
128 GATGGTTTGTATTTGAACACTAAAAATCAAATCAATTATACAATCAATCTTCACAAACACGAGTA
*
65374153 ATA
193 ACA
** * * *
65374156 TTGATAACTACATATGAATACATGACGATAATAATTTATATTTGAATCTCATAAATTAAATTAAT
1 TAAAGAACTACATATGAATACAAGACGATAATAATTTATATTTGAATCTCATAAATTAAATAAAT
* * * * *
65374221 TATAAT-ATCCATCTTCGA-ACAACATGTGTAATATTAAGAATTGTATAAGAATAAATGAAGGCT
66 TATAATGATCCATATT-GACAAAACATGTGTAATATTAAGAACTGTATAAGAA-AAATGAAGACG
* * * * *
65374284 ATGGTTTGTATTTTAACACTAAAACTCAAATCAATTGTCCCATCAATCTTCAC-AACTAC-ATGT
129 ATGGTTTGTATTTGAACACTAAAAATCAAATCAATTATACAATCAATCTTCACAAAC-ACGA-GT
*
65374347 AACG
192 AACA
* * * *
65374351 TAAAGAATTGA-GTATGAATGA-AAGAAC-ATAATAATTTATATTTGAATCCCGTAAATTAAATA
1 TAAAGAACT-ACATATGAAT-ACAAG-ACGATAATAATTTATATTTGAATCTCATAAATTAAATA
65374413 AATTATAA
63 AATTATAA
65374421 GATTGTTCTT
Statistics
Matches: 220, Mismatches: 33, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
193 11 0.05
194 86 0.39
195 119 0.54
196 4 0.02
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.33
Consensus pattern (195 bp):
TAAAGAACTACATATGAATACAAGACGATAATAATTTATATTTGAATCTCATAAATTAAATAAAT
TATAATGATCCATATTGACAAAACATGTGTAATATTAAGAACTGTATAAGAAAAATGAAGACGAT
GGTTTGTATTTGAACACTAAAAATCAAATCAATTATACAATCAATCTTCACAAACACGAGTAACA
Found at i:65376814 original size:27 final size:27
Alignment explanation
Indices: 65376754--65376806 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
65376744 ATTATCAAAA
65376754 AAAAATTCAAAAATAATCATTAAAATC
1 AAAAATTCAAAAATAATCATTAAAATC
*
65376781 AAAAATTCGAAAATAATCATTAAAAT
1 AAAAATTCAAAAATAATCATTAAAAT
65376807 GAAGAATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.62, C:0.09, G:0.02, T:0.26
Consensus pattern (27 bp):
AAAAATTCAAAAATAATCATTAAAATC
Found at i:65379027 original size:19 final size:18
Alignment explanation
Indices: 65378993--65379034 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
65378983 ATTTTTATTT
*
65378993 TTATTATTTCTATTACTG
1 TTATTATTTCTATTACTA
*
65379011 TTATTATTTTTTATTACTA
1 TTATTA-TTTCTATTACTA
65379030 TTATT
1 TTATT
65379035 GTTATATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (18 bp):
TTATTATTTCTATTACTA
Found at i:65379030 original size:25 final size:24
Alignment explanation
Indices: 65378987--65379039 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
65378977 TTTTTTATTT
*
65378987 TTATTTTTATTATTTCTATTACTG
1 TTATTTTTATTATTACTATTACTG
* *
65379011 TTATTATTTTTTATTACTATTATTG
1 TTATT-TTTATTATTACTATTACTG
65379036 TTAT
1 TTAT
65379040 ATTATCGTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.68
Consensus pattern (24 bp):
TTATTTTTATTATTACTATTACTG
Found at i:65379088 original size:3 final size:3
Alignment explanation
Indices: 65378818--65379069 Score: 60
Period size: 3 Copynumber: 85.7 Consensus size: 3
65378808 TTTGCCTTTT
* * ** *
65378818 TTA TTA TTA TTCA -AA TTA TTA CTA TTA TTA TTA TTA TCC CTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
65378863 TTA CTA CTTA -TA TGA TTG TTA TT- TCTA CTA TTA TTA TTA TTA TGA
1 TTA TTA -TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
* * * * * * * *
65378908 ATA -TA TCA GTA TTA TTA ATA -TA TTG TTA TTA TTA GTA TTA TTG TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
65378954 GTG TCA GTA TTA TT- TTCG TTA CCTT- TT- TTA TTT TTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA --TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
65378999 TT- TCTA TTA CTG TTA TTA TT- TT- TTA TTA CTA TTA TTG TTA -TA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * *
65379041 TTA TCG TTA TTA TTC TTA CTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
65379070 GTTAATGCAA
Statistics
Matches: 169, Mismatches: 63, Indels: 34
0.64 0.24 0.13
Matches are distributed among these distances:
2 21 0.12
3 140 0.83
4 6 0.04
5 2 0.01
ACGTcount: A:0.27, C:0.08, G:0.06, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:65379386 original size:17 final size:17
Alignment explanation
Indices: 65379356--65379398 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
65379346 GTATTTCTAG
65379356 TACTATATTACA-TTTAT
1 TACT-TATTACATTTTAT
65379373 TACTTATTAGCATTTTAT
1 TACTTATTA-CATTTTAT
65379391 TA-TTATTA
1 TACTTATTA
65379399 TTATTAGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.21
17 12 0.50
18 7 0.29
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (17 bp):
TACTTATTACATTTTAT
Found at i:65379500 original size:27 final size:31
Alignment explanation
Indices: 65379456--65379515 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 31
65379446 TTAATAACTA
*
65379456 TTTTTAATACCATATATG-T-TGTGTATATTT
1 TTTTTAATA-CATATATGATATGCGTATATTT
65379486 TTTTTAATA-AT-TATGATATGCGTATATTT
1 TTTTTAATACATATATGATATGCGTATATTT
65379515 T
1 T
65379516 CATATATGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 4 0.15
28 3 0.11
29 11 0.41
30 9 0.33
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.57
Consensus pattern (31 bp):
TTTTTAATACATATATGATATGCGTATATTT
Found at i:65392028 original size:43 final size:44
Alignment explanation
Indices: 65391967--65392053 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 44
65391957 ATTCACCAAG
* *
65391967 CCTTAAACCCCTAAGCAGTAGGGTAACAGG-TTAAATTTACAGA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGA
* *
65392010 CCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGAAAATTACAGA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGA
65392054 TTTCGTCTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 28 0.72
44 11 0.28
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (44 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGA
Found at i:65392596 original size:42 final size:44
Alignment explanation
Indices: 65392537--65392656 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 44
65392527 AATTTTCAAA
* * *
65392537 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTGA-GTTTAC-AG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAG
* * * **
65392579 -ATCTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAG
1 CCT-TAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAG
*
65392623 CCTTAACCCCCTAAGCAGTAGGGTAACAGGTTGA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGA
65392657 AAATCAAATA
Statistics
Matches: 60, Mismatches: 14, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
41 1 0.02
42 26 0.43
43 4 0.07
44 28 0.47
45 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (44 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAG
Found at i:65394201 original size:17 final size:17
Alignment explanation
Indices: 65394158--65394215 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
65394148 ATACTATTAT
* *
65394158 TATTATTATTATGAATA
1 TATTGTTATTATTAATA
*
65394175 TATCAG-TATTATTAATA
1 TAT-TGTTATTATTAATA
*
65394192 TATTGTTATTATTAGTA
1 TATTGTTATTATTAATA
65394209 TTATTGT
1 -TATTGT
65394216 CAGTGTCAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
16 1 0.03
17 26 0.79
18 6 0.18
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (17 bp):
TATTGTTATTATTAATA
Found at i:65394291 original size:19 final size:18
Alignment explanation
Indices: 65394257--65394298 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
65394247 ATTTTTATTT
*
65394257 TTATTATTTCTATTACTG
1 TTATTATTTCTATTACTA
*
65394275 TTATTATTTTTTATTACTA
1 TTATTA-TTTCTATTACTA
65394294 TTATT
1 TTATT
65394299 GTTATATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (18 bp):
TTATTATTTCTATTACTA
Found at i:65394294 original size:25 final size:24
Alignment explanation
Indices: 65394251--65394303 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
65394241 TTTTTTATTT
*
65394251 TTATTTTTATTATTTCTATTACTG
1 TTATTTTTATTATTACTATTACTG
* *
65394275 TTATTATTTTTTATTACTATTATTG
1 TTATT-TTTATTATTACTATTACTG
65394300 TTAT
1 TTAT
65394304 ATTATCGTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.68
Consensus pattern (24 bp):
TTATTTTTATTATTACTATTACTG
Found at i:65394352 original size:3 final size:3
Alignment explanation
Indices: 65394079--65394333 Score: 66
Period size: 3 Copynumber: 86.7 Consensus size: 3
65394069 TTTGCCTTTT
* * ** *
65394079 TTA TTA TTA TTGA -AA TTA TTA CTA TTA TTA TTA TTA TCC CTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
65394124 TTA CTA CTTA -TA TGA TTG TTA TT- TATA CTA TTA TTA TTA TTA TTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
* * * * * * * *
65394169 TGA ATA -TA TCA GTA TTA TTA ATA -TA TTG TTA TTA TTA GTA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * *
65394215 TCA GTG TCA GTA TTA TT- TTCG TTA CCTT- TT- TTA TTT TTA TTT TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA --TTA TTA TTA TTA TTA TTA TTA
* * * *
65394260 TTA TT- TCTA TTA CTG TTA TTA TT- TT- TTA TTA CTA TTA TTG TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * *
65394303 -TA TTA TCG TTA TTA TTC TTA CTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
65394334 GTTAATGCAA
Statistics
Matches: 172, Mismatches: 63, Indels: 34
0.64 0.23 0.13
Matches are distributed among these distances:
2 21 0.12
3 143 0.83
4 6 0.03
5 2 0.01
ACGTcount: A:0.28, C:0.07, G:0.06, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:65394667 original size:30 final size:29
Alignment explanation
Indices: 65394625--65394681 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 29
65394615 TCTAGTATTA
65394625 TATTACATTTATTA-CTTATTAGCATTTTAT
1 TATTACATTTATTAGC--ATTAGCATTTTAT
65394655 TATTAC-TATTATTAGCATTAGCATTTT
1 TATTACAT-TTATTAGCATTAGCATTTT
65394682 TTACAACACT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
29 12 0.48
30 12 0.48
31 1 0.04
ACGTcount: A:0.30, C:0.11, G:0.05, T:0.54
Consensus pattern (29 bp):
TATTACATTTATTAGCATTAGCATTTTAT
Found at i:65394765 original size:27 final size:31
Alignment explanation
Indices: 65394721--65394780 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 31
65394711 TTAATAACTA
*
65394721 TTTTTAATACCATATATG-T-TGTGTATATTT
1 TTTTTAATA-CATATATGATATGCGTATATTT
65394751 TTTTTAATA-AT-TATGATATGCGTATATTT
1 TTTTTAATACATATATGATATGCGTATATTT
65394780 T
1 T
65394781 CATATATGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 4 0.15
28 3 0.11
29 11 0.41
30 9 0.33
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.57
Consensus pattern (31 bp):
TTTTTAATACATATATGATATGCGTATATTT
Found at i:65396151 original size:98 final size:98
Alignment explanation
Indices: 65396041--65396376 Score: 243
Period size: 97 Copynumber: 3.4 Consensus size: 98
65396031 AGCGACGACC
* * * *
65396041 ATAATTTCTATTTTAATCCTATAAATTAAATAAACTATATGATTGATATTGACAAAACACGTGTA
1 ATAATTTGTATTTGAATCCTATAAATTAAATAAATTATATGATCGATATTGACAAAACACGTGTA
*
65396106 ATATTGAGAACTGCATAAGAATAAATGAAGACG
66 ATATTGAGAACTGCATAAGAATAAATGAAGACA
** * ** * * *
65396139 ATGGTTTGTATTTGAA-CTCTAAAAACCAAATCAATTATATGATCGATATTCAC-AAAC-CTGAG
1 ATAATTTGTATTTGAATC-CTATAAATTAAATAAATTATATGATCGATATTGACAAAACAC-GTG
** * * * * *
65396201 TAATATTGATTACTACATATGAATACATGACGATA
64 TAATATTGAGAACTGCATAAGAATAAATGAAGACA
* * * * * *
65396236 ATAATTTATATTTGAATCTTGTGAATTAAATAAATTATAAT-ATCCATTTTCG-CAAAACACGTG
1 ATAATTTGTATTTGAATCCTATAAATTAAATAAATTAT-ATGATCGATATT-GACAAAACACGTG
* * *
65396299 TAATATTAAGAACTGTATGCATAAAAATAAATGAAGACT
64 TAATATTGAGAAC----TGCATAAGAATAAATGAAGACA
* * * * *
65396338 ATCATTTGTATTTTAA-CACTAAAAATCAAATCAATTATA
1 ATAATTTGTATTTGAATC-CTATAAATTAAATAAATTATA
65396377 ATACTCTTTG
Statistics
Matches: 173, Mismatches: 53, Indels: 21
0.70 0.21 0.09
Matches are distributed among these distances:
96 1 0.01
97 68 0.39
98 59 0.34
99 1 0.01
101 2 0.01
102 42 0.24
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (98 bp):
ATAATTTGTATTTGAATCCTATAAATTAAATAAATTATATGATCGATATTGACAAAACACGTGTA
ATATTGAGAACTGCATAAGAATAAATGAAGACA
Found at i:65398208 original size:27 final size:26
Alignment explanation
Indices: 65398170--65398221 Score: 95
Period size: 27 Copynumber: 2.0 Consensus size: 26
65398160 AACGTTACAA
65398170 ATTAAAAAAAATGTTACCAAATAACT
1 ATTAAAAAAAATGTTACCAAATAACT
65398196 ATTAAAAATAAATGTTACCAAATAAC
1 ATTAAAAA-AAATGTTACCAAATAAC
65398222 GTTACAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.58, C:0.12, G:0.04, T:0.27
Consensus pattern (26 bp):
ATTAAAAAAAATGTTACCAAATAACT
Found at i:65398220 original size:14 final size:14
Alignment explanation
Indices: 65398178--65398220 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
65398168 AAATTAAAAA
65398178 AAATGTTACCAAAT
1 AAATGTTACCAAAT
* * *
65398192 AACTATTA-AAAAT
1 AAATGTTACCAAAT
65398205 AAATGTTACCAAAT
1 AAATGTTACCAAAT
65398219 AA
1 AA
65398221 CGTTACAAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.28
Consensus pattern (14 bp):
AAATGTTACCAAAT
Found at i:65399260 original size:98 final size:95
Alignment explanation
Indices: 65399148--65399454 Score: 251
Period size: 98 Copynumber: 3.1 Consensus size: 95
65399138 GAATGACGAT
* * * * *
65399148 AATAATTTCTATTTGAATCGTATAAATTAAATAAACTATATGATTGATATTGACAAAACACATGT
1 AATAGTTTGTATTTGAATC-TATAAATTAAATAAATTATA-GATCGATCTTGACAAAACACATGT
65399213 AATATTAAGAACTGCATAAGAATAAATGCAGAC
64 AATATTAAGAACTGCATAAGAATAAATGCA-AC
* * * * * * * *
65399246 GATAGTTTGTATTTGAGCTCTAAAAATCAAATCAATTATACAATCGATCTTCAC-AAACA-AGAG
1 AATAGTTTGTATTTGA-ATCTATAAATTAAATAAATTATA-GATCGATCTTGACAAAACACA-TG
* * * * *
65399309 TAATATTGAGAACTACATATGAATACATGACAAT
63 TAATATTAAGAACTGCATAAGAATAAATG-CAAC
* * * * *
65399343 AATAATTTATATTTGAATCTCATCAATTAAATAAATTATAGTATCCATCTTCG-CAAAACACGTG
1 AATAGTTTGTATTTGAATCT-ATAAATTAAATAAATTATAG-ATCGATCTT-GACAAAACACATG
* *
65399407 TAATATTAAGAATTGCATAAGAATAAATGAATAC
63 TAATATTAAGAACTGCATAAGAATAAATGCA-AC
* *
65399441 TATAGTCTGTATTT
1 AATAGTTTGTATTT
65399455 TAACACTAAA
Statistics
Matches: 157, Mismatches: 43, Indels: 18
0.72 0.20 0.08
Matches are distributed among these distances:
96 4 0.03
97 70 0.45
98 81 0.52
99 2 0.01
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (95 bp):
AATAGTTTGTATTTGAATCTATAAATTAAATAAATTATAGATCGATCTTGACAAAACACATGTAA
TATTAAGAACTGCATAAGAATAAATGCAAC
Found at i:65399322 original size:97 final size:96
Alignment explanation
Indices: 65399211--65399477 Score: 232
Period size: 97 Copynumber: 2.7 Consensus size: 96
65399201 CAAAACACAT
*
65399211 GTAATATTAAGAACTGCATAAGAATAAATGCAGACGATAGTTTGTATTTGAGCTCTAAAAATCAA
1 GTAATATTAAGAACTGCATAAGAATAAATGCA-ACAATAGTTTGTATTTGA-CTCTAAAAATCAA
*
65399276 ATCAATTATACAATCGATCTTCAC-AAACAAGA
64 ATCAATTATACAATCCATCTTCACAAAACAAGA
* * * * * * * * ** *
65399308 GTAATATTGAGAACTACATATGAATACATGACAATAATAATTTATATTTGAATCTCATCAATTAA
1 GTAATATTAAGAACTGCATAAGAATAAATG-CAACAATAGTTTGTATTTGACTCT-AAAAATCAA
* ** * * *
65399373 ATAAATTATAGTATCCATCTTCGCAAAACACGT
64 ATCAATTATACAATCCATCTTCACAAAACAAGA
* * * * * *
65399406 GTAATATTAAGAATTGCATAAGAATAAATGAATACTATAGTCTGTATTTTAACACTAAAACA-CA
1 GTAATATTAAGAACTGCATAAGAATAAATGCA-ACAATAGTTTGTA-TTTGACTCTAAAA-ATCA
65399470 AATCAATT
63 AATCAATT
65399478 GTCCGATCAA
Statistics
Matches: 127, Mismatches: 37, Indels: 11
0.73 0.21 0.06
Matches are distributed among these distances:
96 3 0.02
97 66 0.52
98 51 0.40
99 7 0.06
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.31
Consensus pattern (96 bp):
GTAATATTAAGAACTGCATAAGAATAAATGCAACAATAGTTTGTATTTGACTCTAAAAATCAAAT
CAATTATACAATCCATCTTCACAAAACAAGA
Found at i:65399544 original size:195 final size:195
Alignment explanation
Indices: 65399106--65399575 Score: 522
Period size: 195 Copynumber: 2.4 Consensus size: 195
65399096 TGTTTGCACG
* * *
65399106 AACACGTGTAATTTAAAGAACTACGTATGAATGAATGACGATAATAATTTCTATTTGAATCGT-A
1 AACACGTGTAATATAAAGAACTACGTATGAATGAATGACAATAATAATTTATATTTGAATC-TCA
* **
65399170 TAAATTAAATAAACTATATGATTGATATTGACAAAACACATGTAATATTAAGAACTGCATAAGAA
65 TAAATTAAATAAATTATATGATCCATATTGACAAAACACATGTAATATTAAGAACTGCATAAGAA
* * * * *
65399235 TAAATGCAGACGATAGTTTGTATTTGAGCTCTAAAAATCAAATCAATTATACAATCGATCTTCAC
130 TAAATGAAGACGATAGTCTGTATTTGAACACTAAAAATCAAATCAATTATACAATCAATCTTCAC
65399300 A
195 A
* * ** *
65399301 AACAAGAGTAATATTGAGAACTACATATGAAT-ACATGACAATAATAATTTATATTTGAATCTCA
1 AACACGTGTAATATAAAGAACTACGTATGAATGA-ATGACAATAATAATTTATATTTGAATCTCA
* * * *
65399365 TCAATTAAATAAATTATA-GTATCCATCTTCG-CAAAACACGTGTAATATTAAGAATTGCATAAG
65 TAAATTAAATAAATTATATG-ATCCATATT-GACAAAACACATGTAATATTAAGAACTGCATAAG
* * * * * *
65399428 AATAAATGAATACTATAGTCTGTATTTTAACACTAAAACA-CAAATCAATTGTCCGATCAATCTT
128 AATAAATGAAGACGATAGTCTGTATTTGAACACTAAAA-ATCAAATCAATTATACAATCAATCTT
65399492 CAC-
192 CACA
* ** * * * * *
65399495 TACTACGTGTAACGTAAAGAATTGCGTACGAATGAATGA-ACACAATAATTTATATTTGAATCCC
1 AAC-ACGTGTAATATAAAGAACTACGTATGAATGAATGACA-ATAATAATTTATATTTGAATCTC
65399559 ATAAATTAAATAAATTA
64 ATAAATTAAATAAATTA
65399576 AAAGATTGTT
Statistics
Matches: 227, Mismatches: 40, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
194 6 0.03
195 218 0.96
196 3 0.01
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.31
Consensus pattern (195 bp):
AACACGTGTAATATAAAGAACTACGTATGAATGAATGACAATAATAATTTATATTTGAATCTCAT
AAATTAAATAAATTATATGATCCATATTGACAAAACACATGTAATATTAAGAACTGCATAAGAAT
AAATGAAGACGATAGTCTGTATTTGAACACTAAAAATCAAATCAATTATACAATCAATCTTCACA
Found at i:65403412 original size:26 final size:26
Alignment explanation
Indices: 65403376--65403459 Score: 143
Period size: 26 Copynumber: 3.2 Consensus size: 26
65403366 TGATACAAAT
65403376 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
65403402 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
65403428 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
65403454 TGATAA
1 TGATAA
65403460 GAATTTCATG
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
26 53 0.95
27 3 0.05
ACGTcount: A:0.36, C:0.04, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:65403576 original size:21 final size:21
Alignment explanation
Indices: 65403550--65403590 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
65403540 AAGTTTTGTC
65403550 CATCATAGCTGAAAGTTAGAA
1 CATCATAGCTGAAAGTTAGAA
65403571 CATCATAGCTGAAAGTTAGA
1 CATCATAGCTGAAAGTTAGA
65403591 GAAGAGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (21 bp):
CATCATAGCTGAAAGTTAGAA
Found at i:65405124 original size:27 final size:27
Alignment explanation
Indices: 65405083--65405153 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
65405073 GAGGAAGCGT
*
65405083 TCTGGTGGCTATGCCACAAATATCTAA
1 TCTGGTGGCTCTGCCACAAATATCTAA
* **
65405110 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTAA
65405137 TCTGGTGGCTCTGCCAC
1 TCTGGTGGCTCTGCCAC
65405154 GATTATCAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTAA
Found at i:65405160 original size:27 final size:26
Alignment explanation
Indices: 65405081--65405189 Score: 105
Period size: 27 Copynumber: 4.1 Consensus size: 26
65405071 TGGAGGAAGC
* *
65405081 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
**
65405108 AATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
*
65405135 GTTCTGGTGGCTCTGCCACGATTATCA
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* *
65405162 GTATCTGGT-G-ACTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
65405187 GTT
1 GTT
65405190 TTGGCAGCCA
Statistics
Matches: 69, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
24 1 0.01
25 8 0.12
26 7 0.10
27 45 0.65
28 8 0.12
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:65409210 original size:26 final size:26
Alignment explanation
Indices: 65409174--65409257 Score: 143
Period size: 26 Copynumber: 3.2 Consensus size: 26
65409164 TGATACAAAT
65409174 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
65409200 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
65409226 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
65409252 TGATAA
1 TGATAA
65409258 GAATTTCATG
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
26 53 0.95
27 3 0.05
ACGTcount: A:0.36, C:0.04, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:65410716 original size:26 final size:26
Alignment explanation
Indices: 65410678--65410727 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
65410668 CTATGTATGG
*
65410678 AAAATTACTGTTATACCCCTAGGTGC
1 AAAATTACCGTTATACCCCTAGGTGC
*
65410704 AAAATTACCGTTATACCCGTAGGT
1 AAAATTACCGTTATACCCCTAGGT
65410728 TTAATTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (26 bp):
AAAATTACCGTTATACCCCTAGGTGC
Done.