Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 195 of 284
Found at i:65592632 original size:53 final size:52
Alignment explanation
Indices: 65592527--65592632 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 52
65592517 CTCAAAACCC
* * * *
65592527 TTTTGGTCTCAAAGCGCCCTTTGTGGGTTTTCGCCTTGACTTCTCTATTTTT
1 TTTTGGTCTCAAAGCGCCCTTTATGGGTTTTCGCCTTGACCTCTCCACTTTT
* * * *
65592579 TTTTAGGTCTCAAAGCGTCCTTTATGGGTTTTCTCCTTGGCCTCTCCCCTTTT
1 TTTT-GGTCTCAAAGCGCCCTTTATGGGTTTTCGCCTTGACCTCTCCACTTTT
65592632 T
1 T
65592633 AGGTGAAGTA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
52 4 0.09
53 41 0.91
ACGTcount: A:0.09, C:0.25, G:0.18, T:0.47
Consensus pattern (52 bp):
TTTTGGTCTCAAAGCGCCCTTTATGGGTTTTCGCCTTGACCTCTCCACTTTT
Found at i:65594517 original size:125 final size:127
Alignment explanation
Indices: 65594311--65594572 Score: 336
Period size: 125 Copynumber: 2.1 Consensus size: 127
65594301 GAGTATGAAC
* * * *
65594311 TTGCCTTCTATTTCATTTAAAACTCATGTATTTAAATTTTAAAATGGATATTCGGATATTTAGTT
1 TTGCCTT-TATTTCATTTAAAACTCATATATTTAAATTTTAAAATGGATAATCGGATACTTAGAT
* *
65594376 CAAACGAAAAATCGAAACCCAATACGTTAAGGA-ACGACTACTCGAA-TTTCTAAATA-CGGAAT
65 CAAACGAAAAACCGAAAACCAATACGTT-AGGACACGACTACTCGAATTTTC-AAATATC-GAAT
65594438 A
127 A
* * *
65594439 TTGCCTTTATTTTATTTAAAACTCATATATTTTAA-TTTAAAA-GGATAATCGGTTACTTAGATC
1 TTGCCTTTATTTCATTTAAAACTCATATATTTAAATTTTAAAATGGATAATCGGATACTTAGATC
* * * *
65594502 AAACGAAAAACCGAAAACCAGTACGTTAGGACACGATTTCTCGAATTTTCAAGTATCGAATA
66 AAACGAAAAACCGAAAACCAATACGTTAGGACACGACTACTCGAATTTTCAAATATCGAATA
65594564 TTGCCTTTA
1 TTGCCTTTA
65594573 CTTGAAAAAT
Statistics
Matches: 118, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
124 4 0.03
125 70 0.59
126 12 0.10
127 25 0.21
128 7 0.06
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (127 bp):
TTGCCTTTATTTCATTTAAAACTCATATATTTAAATTTTAAAATGGATAATCGGATACTTAGATC
AAACGAAAAACCGAAAACCAATACGTTAGGACACGACTACTCGAATTTTCAAATATCGAATA
Found at i:65594610 original size:15 final size:16
Alignment explanation
Indices: 65594590--65594624 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
65594580 AATCCAGACA
*
65594590 AAAATAATA-ATAGAT
1 AAAATAATATAGAGAT
65594605 AAAATAATATAGAGAT
1 AAAATAATATAGAGAT
65594621 AAAA
1 AAAA
65594625 AATGGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.23
Consensus pattern (16 bp):
AAAATAATATAGAGAT
Found at i:65594878 original size:28 final size:26
Alignment explanation
Indices: 65594817--65594879 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
65594807 TAGTGTTAAA
* *
65594817 AATAATAATAATAATAAACAAACGAT
1 AATAATAATGATAATAAAAAAACGAT
*
65594843 -ATATTAATGATAATAGAAAATAACGAT
1 AATAATAATGATAATA-AAAA-AACGAT
65594870 AATAATAATG
1 AATAATAATG
65594880 GAAGTAACGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
25 13 0.43
26 3 0.10
27 6 0.20
28 8 0.27
ACGTcount: A:0.60, C:0.05, G:0.08, T:0.27
Consensus pattern (26 bp):
AATAATAATGATAATAAAAAAACGAT
Found at i:65595037 original size:23 final size:22
Alignment explanation
Indices: 65594989--65595037 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
65594979 CAATAATAAT
* *
65594989 ATAAAAAAATAATACTATATTG
1 ATAAAAAAATAATACTAGATTA
* *
65595011 ATAAAAATAATAATAGTAGGTTA
1 ATAAAAA-AATAATACTAGATTA
65595034 ATAA
1 ATAA
65595038 TAATTGTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (22 bp):
ATAAAAAAATAATACTAGATTA
Found at i:65595041 original size:3 final size:3
Alignment explanation
Indices: 65594733--65595025 Score: 54
Period size: 3 Copynumber: 97.0 Consensus size: 3
65594723 AATAGGACGG
* * * * *
65594733 ATA ATA AAA ATA ATA GTA ATA ATA ATA AT- ATA ATG GTA ATA ATA TTTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * * * * * * *
65594781 AAA AAA AGTA A-A TATA ATG ATG ATA ATA GTG TTA AAA ATA ATA ATA
1 ATA ATA A-TA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
** * * * **
65594827 ATA ATA A-A CA-A ACG AT- ATA TTA ATG ATA ATA GAAA ATA ACG ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* * *
65594871 ATA ATA ATGGA AGTA ACGA A-A ATA ATA ATA ATA GA-A ACA ATA GTA
1 ATA ATA AT--A A-TA A-TA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* * *
65594916 ATA A-A AGTA ATA ATA A-A ATA GAAA ATA ACA ATG ATA CATTA ATA ATA
1 ATA ATA A-TA ATA ATA ATA ATA -ATA ATA ATA ATA ATA -A-TA ATA ATA
* * * * *
65594963 AT- ATA CATG CTA ATA ACA ATA ATA AT- ATA A-A AAA ATA ATA CT-
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
65595005 ATA TTG ATA AAA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA
65595026 GTAGGTTAAT
Statistics
Matches: 205, Mismatches: 59, Indels: 52
0.65 0.19 0.16
Matches are distributed among these distances:
2 21 0.10
3 159 0.78
4 20 0.10
5 4 0.02
6 1 0.00
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:65595577 original size:213 final size:213
Alignment explanation
Indices: 65595200--65596221 Score: 1900
Period size: 213 Copynumber: 4.8 Consensus size: 213
65595190 AATCTGGCCA
* ** *
65595200 TCCGGCCATCGGACCTCCGGGAGCCGGTGTTGGCACCACCGTACACGGTGGTTGGACCTAAAAAA
1 TCCGGCCACCGGACCTCCTCGAGCCGCTGTTGGCACCACCGTACACGGTGGTTGGACCT-AAAAA
* *
65595265 AAAATCCTTTTTCGGCAATTCCAAAATGGGTAAACTTCTTCCCTTTATTTTTACTTTAGTATGTA
65 AAAACCCTTTTTCGGCAATTCCAAAATGGGTAAACTTCTTCCCCTTATTTTTACTTTAGTATGTA
65595330 AAAAGAAACAAAATAAAATTGAAAGATAAAATAAAATAACACTCTTCCCCTCCTATTTAAATCCG
130 AAAAGAAACAAAATAAAATTGAAAGATAAAATAAAATAACACTCTTCCCCTCCTATTTAAATCCG
65595395 GCCATCGGTCCGGCCTTGC
195 GCCATCGGTCCGGCCTTGC
*
65595414 TCCGGACACCGGACCTCCTCGAGCCGCTGTTGGCACCACCGTACACGGTGGTTGGACCTAAAAAA
1 TCCGGCCACCGGACCTCCTCGAGCCGCTGTTGGCACCACCGTACACGGTGGTTGGACCTAAAAAA
*
65595479 AAACCCTTTTTCGGTAATTCCAAAATGGGTAAACTTCTTCCCCTTATTTTTACTTTAGTATGTAA
66 AAACCCTTTTTCGGCAATTCCAAAATGGGTAAACTTCTTCCCCTTATTTTTACTTTAGTATGTAA
65595544 AAAGAAACAAAATAAAATTGAAAGATAAAATAAAATAACACTCTTCCCCTCCTATTTAAATCCGG
131 AAAGAAACAAAATAAAATTGAAAGATAAAATAAAATAACACTCTTCCCCTCCTATTTAAATCCGG
65595609 CCATCGGTCCGGCCTTGC
196 CCATCGGTCCGGCCTTGC
*
65595627 TCCGGACACCGGACCTCCTCGAGCCGCTGTTGGCACCACCGTACACGGTGGTTGGACCTAAAAAA
1 TCCGGCCACCGGACCTCCTCGAGCCGCTGTTGGCACCACCGTACACGGTGGTTGGACCTAAAAAA
*
65595692 AAACCCTTTTTCGGTAATTCCAAAATGGGTAAACTTCTTCCCCTTATTTTTACTTTAGTATGTAA
66 AAACCCTTTTTCGGCAATTCCAAAATGGGTAAACTTCTTCCCCTTATTTTTACTTTAGTATGTAA
65595757 AAAGAAACAAAATAAAATTGAAAGATAAAATAAAATAACACTCTTCCCCTCCTATTTAAATCCGG
131 AAAGAAACAAAATAAAATTGAAAGATAAAATAAAATAACACTCTTCCCCTCCTATTTAAATCCGG
65595822 CCATCGGTCCGGCCTTGC
196 CCATCGGTCCGGCCTTGC
65595840 TCCGGCCACCGGACCTCCTCGAGCCGCTGTTGGCACCACCGTACACGGTGGTTGGACCTAAAAAA
1 TCCGGCCACCGGACCTCCTCGAGCCGCTGTTGGCACCACCGTACACGGTGGTTGGACCTAAAAAA
65595905 AAACCCTTTTTCGGCAATTCCAAAATGGGTAAACTTCTTCCCCTTATTTTTACTTTAGTATGTAA
66 AAACCCTTTTTCGGCAATTCCAAAATGGGTAAACTTCTTCCCCTTATTTTTACTTTAGTATGTAA
65595970 AAAGAAACAAAATAAAATTGAAAGATAAAATAAAATAACACTCTTCCCCTCCTATTTAAATCCGG
131 AAAGAAACAAAATAAAATTGAAAGATAAAATAAAATAACACTCTTCCCCTCCTATTTAAATCCGG
65596035 CCATCGGTCCGGCCTTGC
196 CCATCGGTCCGGCCTTGC
* *
65596053 TCCGGCCACCGGACCTCCACGAGCCGGTGTTGGCACCACCGTACACGGTGGTTGGACCTAAAAAA
1 TCCGGCCACCGGACCTCCTCGAGCCGCTGTTGGCACCACCGTACACGGTGGTTGGACCT-AAAAA
* *
65596118 AAAATCCTTTTTCGGCAATTCCAAAATGGGTAAACTTCTTCCCTTTATTTTTACTTTAGTATGTA
65 AAAACCCTTTTTCGGCAATTCCAAAATGGGTAAACTTCTTCCCCTTATTTTTACTTTAGTATGTA
65596183 AAAAGAAACAAAATAAAATTGAAAGATAAAATAAAATAA
130 AAAAGAAACAAAATAAAATTGAAAGATAAAATAAAATAA
65596222 ACAAGGAACT
Statistics
Matches: 793, Mismatches: 14, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
213 632 0.80
214 161 0.20
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (213 bp):
TCCGGCCACCGGACCTCCTCGAGCCGCTGTTGGCACCACCGTACACGGTGGTTGGACCTAAAAAA
AAACCCTTTTTCGGCAATTCCAAAATGGGTAAACTTCTTCCCCTTATTTTTACTTTAGTATGTAA
AAAGAAACAAAATAAAATTGAAAGATAAAATAAAATAACACTCTTCCCCTCCTATTTAAATCCGG
CCATCGGTCCGGCCTTGC
Found at i:65596320 original size:24 final size:25
Alignment explanation
Indices: 65596293--65596344 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
65596283 ATCTCGTGTA
*
65596293 TTTCTTGTATT-GAGA-GTCTCTCTT
1 TTTCTTGTATTCGA-ATCTCTCTCTT
65596317 TTTCTTGTATTCGAATCTCTCTCTT
1 TTTCTTGTATTCGAATCTCTCTCTT
65596342 TTT
1 TTT
65596345 TTCTCCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.12, C:0.19, G:0.12, T:0.58
Consensus pattern (25 bp):
TTTCTTGTATTCGAATCTCTCTCTT
Found at i:65612474 original size:19 final size:19
Alignment explanation
Indices: 65612450--65612491 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
65612440 GAAATAAAAT
* *
65612450 AAAAAAAATCTAAAGAAAG
1 AAAAAAAAACCAAAGAAAG
*
65612469 AAAAAAAAACCAAGGAAAG
1 AAAAAAAAACCAAAGAAAG
65612488 AAAA
1 AAAA
65612492 TATGAAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.76, C:0.07, G:0.12, T:0.05
Consensus pattern (19 bp):
AAAAAAAAACCAAAGAAAG
Found at i:65612703 original size:16 final size:16
Alignment explanation
Indices: 65612672--65612722 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
65612662 ATTGCTAGTG
65612672 TTTTTTTTT--TGG-A
1 TTTTTTTTTGCTGGAA
65612685 TTTTTTTTTGCTGGAA
1 TTTTTTTTTGCTGGAA
65612701 TTTTTTTTTGCTGGAA
1 TTTTTTTTTGCTGGAA
65612717 TTTTTT
1 TTTTTT
65612723 GCTCTTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
13 9 0.26
15 3 0.09
16 23 0.66
ACGTcount: A:0.10, C:0.04, G:0.16, T:0.71
Consensus pattern (16 bp):
TTTTTTTTTGCTGGAA
Found at i:65613573 original size:75 final size:75
Alignment explanation
Indices: 65613312--65613822 Score: 645
Period size: 75 Copynumber: 6.7 Consensus size: 75
65613302 GTGTGACCTA
* *
65613312 AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAGACAGAAATTGAAAATACC
*
65613377 TCAGTGCGTGAT-TTG
63 TCA--ACGTG-TCTTG
* * * * *
65613392 AGGTTCAACTCACCCCTCGCAATATCAGTTGATTGATTTTTTTGAAA-AGTAGAAATTAAAAATA
1 AGGCTCAACTCACCTCTCGCAATAT--G-AG-TTGATTTTTTTGAAAGA-CAGAAATTGAAAATA
* * *
65613456 CCTCAGCATGTGAAC-CG
61 CCTCA--ACGTG-TCTTG
* * *
65613473 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
65613538 ACGTGTCTTG
66 ACGTGTCTTG
* ** *
65613548 AGGCTTAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
65613613 ACGTGTCTTG
66 ACGTGTCTTG
65613623 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
65613688 ACGTGTCTTG
66 ACGTGTCTTG
** * * *
65613698 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
*
65613763 GCGTGTCTTG
66 ACGTGTCTTG
65613773 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AA-ACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAAT
65613823 AAAAACATCA
Statistics
Matches: 381, Mismatches: 42, Indels: 23
0.85 0.09 0.05
Matches are distributed among these distances:
73 7 0.02
74 3 0.01
75 251 0.66
77 31 0.08
78 2 0.01
79 1 0.00
80 23 0.06
81 57 0.15
82 1 0.00
83 1 0.00
84 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (75 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
ACGTGTCTTG
Found at i:65617029 original size:40 final size:40
Alignment explanation
Indices: 65616984--65617254 Score: 242
Period size: 40 Copynumber: 6.7 Consensus size: 40
65616974 GTTTTAGTCT
* *
65616984 GCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCT
1 GCTCCACTATTGCTTAGGGAGATAAGACTGGATGTGATCC
* * * * *
65617024 ACTCCACTACTGCTTAGGG-GAATAAGATCTGTGGTTCTG-TCT
1 GCTCCACTATTGCTTAGGGAG-ATAAGA-C--TGGATGTGATCC
* * * *
65617066 GCTCCACTATTGCTTGGGGAGATAAGACTTGAAGTGATCT
1 GCTCCACTATTGCTTAGGGAGATAAGACTGGATGTGATCC
* * *
65617106 GCTCCACTATTGCTTAAGGAGATAAGATCTGTGGTTTTG-TCC
1 GCTCCACTATTGCTTAGGGAGATAAGA-C--TGGATGTGATCC
* * * **
65617148 GCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCAATCC
1 GCTCCACTATTGCTTAGGGAGATAAGACTGGATGTGATCC
* * **
65617188 GCTCCACTATTGCTTAGGGAGATAAGATTTGATACGATCC
1 GCTCCACTATTGCTTAGGGAGATAAGACTGGATGTGATCC
*
65617228 GCTCCACTATTACTTAGGGAGATAAGA
1 GCTCCACTATTGCTTAGGGAGATAAGA
65617255 TCTGTGGTTT
Statistics
Matches: 190, Mismatches: 31, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
39 8 0.04
40 116 0.61
41 4 0.02
42 51 0.27
43 11 0.06
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (40 bp):
GCTCCACTATTGCTTAGGGAGATAAGACTGGATGTGATCC
Found at i:65617068 original size:82 final size:82
Alignment explanation
Indices: 65616965--65617254 Score: 345
Period size: 82 Copynumber: 3.5 Consensus size: 82
65616955 CACGGGGATG
* * * * *
65616965 AGATTTGTGGTTTTAGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCTACTCCA
1 AGATCTGTGGTTCT-GTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCA
*
65617030 CTACTGCTTAGGG-GAATA
65 CTATTGCTTAGGGAG-ATA
* * * *
65617048 AGATCTGTGGTTCTGTCTGCTCCACTATTGCTTGGGGAGATAAGACTTGAAGTGATCTGCTCCAC
1 AGATCTGTGGTTCTGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCAC
*
65617113 TATTGCTTAAGGAGATA
66 TATTGCTTAGGGAGATA
* * ** *
65617130 AGATCTGTGGTTTTGTCCGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCAATCCGCTCCAC
1 AGATCTGTGGTTCTGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCAC
65617195 TATTGCTTAGGGAGATA
66 TATTGCTTAGGGAGATA
* * * *
65617212 AGAT-T-TGATAC-GATCCGCTCCACTATTACTTAGGGAGATAAGA
1 AGATCTGTGGTTCTG-TCCGCTCCACTACTGCTTAGGGAGATAAGA
65617255 TCTGTGGTTT
Statistics
Matches: 180, Mismatches: 25, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.01
80 30 0.17
81 1 0.01
82 135 0.75
83 13 0.07
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (82 bp):
AGATCTGTGGTTCTGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCAC
TATTGCTTAGGGAGATA
Found at i:65617121 original size:122 final size:121
Alignment explanation
Indices: 65616981--65617261 Score: 318
Period size: 122 Copynumber: 2.3 Consensus size: 121
65616971 GTGGTTTTAG
* *
65616981 TCTGCTCCACTACTGCTTAGGGAGATAAGA-C-TGGATGTGATCTACTCCACTACTGCTTAGGG-
1 TCTGCTCCACTATTGCTTAGGGAGATAAGATCGTGGATGTG-TCCACTCCACTACTGCTTAGGGA
* * ** * * *
65617043 GAATAAGATCTGTGGTTCTGTCTGCTCCACTATTGCTTGGGGAGATAAGACTTGA-AGTGA
65 G-ATAAGA-CT-TGATGCAATCCGCTCCACTATTGCTTAGGGAGATAAGACTTGATA-CGA
* * * * *
65617103 TCTGCTCCACTATTGCTTAAGGAGATAAGATCTGTGGTTTTGTCCGCTCCGCTACTGCTTAGGGA
1 TCTGCTCCACTATTGCTTAGGGAGATAAGATC-GTGGATGTGTCCACTCCACTACTGCTTAGGGA
*
65617168 GATAAGACTTGATGCAATCCGCTCCACTATTGCTTAGGGAGATAAGATTTGATACGA
65 GATAAGACTTGATGCAATCCGCTCCACTATTGCTTAGGGAGATAAGACTTGATACGA
* *
65617225 TCCGCTCCACTATTACTTAGGGAGATAAGATCTGTGG
1 TCTGCTCCACTATTGCTTAGGGAGATAAGATC-GTGG
65617262 TTTTCACTCT
Statistics
Matches: 136, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
122 100 0.74
123 4 0.03
124 25 0.18
125 7 0.05
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (121 bp):
TCTGCTCCACTATTGCTTAGGGAGATAAGATCGTGGATGTGTCCACTCCACTACTGCTTAGGGAG
ATAAGACTTGATGCAATCCGCTCCACTATTGCTTAGGGAGATAAGACTTGATACGA
Found at i:65617595 original size:44 final size:44
Alignment explanation
Indices: 65617425--65617934 Score: 458
Period size: 44 Copynumber: 11.6 Consensus size: 44
65617415 CAAATACAGG
* * *
65617425 GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCA-CACCAATATAGGAA
* * * *
65617470 GACAAGATCTGTTTTCTTCGATCTACTTCACCACCAGTATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCA-CACCAATATAGGAA
* * * *
65617515 GACAAGATTTG-TATCTTGGATCCACTTC-CTATCAATATAGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAA
* * * * * * *
65617558 GATAGGACCTGCTATTTTCGATCTACTTCACGCCAATACATGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAA
* * * * * *
65617602 GACAAGATCTACTTTCTGCGATCTACTTCGCCATCAATATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAA
* *
65617647 GACAAGATCTGC-ATCGTCGATCCACTTC-CTACCAATATAGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAA
** * * * *
65617690 GACCGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAA
* * *
65617734 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAA-ATAGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAA
*
65617778 GACAAGATCTG-TATCTTCGATCCACTTC-CTACCAATATAGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAA
* * * * * *
65617821 GATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAA
* * * * *
65617865 GATAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAA
* *
65617910 GACAAGATCTGCAATCTTCAATCTA
1 GACAAGATCTGCTATCTTCGATCTA
65617935 TTCCACTGCC
Statistics
Matches: 372, Mismatches: 80, Indels: 26
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.00
42 7 0.02
43 67 0.18
44 185 0.50
45 112 0.30
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
GACAAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAA
Found at i:65617643 original size:132 final size:132
Alignment explanation
Indices: 65617433--65617920 Score: 744
Period size: 132 Copynumber: 3.7 Consensus size: 132
65617423 GGGACAAGAT
* * * *** * *
65617433 CTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTTTCTTCGATCTACTT
1 CTGCTATCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTT
* * * * *
65617498 CACCACCAGTATGGGAAGACAAGATTTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAG
65 CGCCACCAATATGGGAAGACAAGATCTGTATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
65617563 GAC
130 GAC
* *
65617566 CTGCTATTTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* * * **
65617631 GCCATCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACCGG
66 GCCACCAATATGGGAAGACAAGATCTGTATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
65617696 AC
131 AC
65617698 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
*
65617763 GCCACCAA-ATAGGAAGACAAGATCTGTATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGTATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
*
65617827 AT
131 AC
* *
65617829 CTGCTACCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
65617894 GCCACCAATATGGGAAGACAAGATCTG
66 GCCACCAATATGGGAAGACAAGATCTG
65617921 CAATCTTCAA
Statistics
Matches: 322, Mismatches: 32, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
131 123 0.38
132 179 0.56
133 20 0.06
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (132 bp):
CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
GCCACCAATATGGGAAGACAAGATCTGTATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
AC
Found at i:65618066 original size:136 final size:134
Alignment explanation
Indices: 65617906--65618200 Score: 495
Period size: 136 Copynumber: 2.2 Consensus size: 134
65617896 CACCAATATG
*
65617906 GGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGCCA-AATACAGGGAGATAGAGTTATCGG
1 GGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGAA-ACAGGGAGATAGAGTTATCGG
*
65617970 CTTCAATCTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCC
65 CTTCAATCTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCACTGCC
65618035 AAATACA
128 AAATACA
65618042 GGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGAAACAGGGAGATAGAGTTATCGGC
1 GGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGAAACAGGGAGATAGAGTTATCGGC
* *
65618107 TTCAATGTACTCCACTGTTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCACTGCCAAA
66 TTCAATCTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCACTGCCAAA
65618172 TACA
131 TACA
*
65618176 GGAAAGCAAGATCTG-ATATCTTCAA
1 GGAAGGCAAGATCTGCA-ATCTTCAA
65618201 CCAGCTCTGC
Statistics
Matches: 152, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
133 1 0.01
134 69 0.45
136 80 0.53
137 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (134 bp):
GGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGAAACAGGGAGATAGAGTTATCGGC
TTCAATCTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCACTGCCAAA
TACA
Found at i:65618080 original size:46 final size:46
Alignment explanation
Indices: 65617906--65618089 Score: 128
Period size: 46 Copynumber: 4.0 Consensus size: 46
65617896 CACCAATATG
65617906 GGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
1 GGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
* * * * ** * * *
65617952 GGGAGATAGAGTTAT-C-GGCTTCAATCTACTCCACTG--TAGTCACA
1 GGAAGACA-AGATCTGCAATCTTCAATCTATTCCACTGCCAAAT-ACA
* ** * * * * *
65617996 GGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CGCTGCCAAATACA
1 GGAAGACAAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACA
*
65618042 GGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGAA-ACA
1 GGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGCCA-AATACA
65618088 GG
1 GG
65618090 GAGATAGAGT
Statistics
Matches: 101, Mismatches: 28, Indels: 18
0.69 0.19 0.12
Matches are distributed among these distances:
43 5 0.05
44 11 0.11
45 31 0.31
46 46 0.46
47 8 0.08
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (46 bp):
GGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
Found at i:65618269 original size:42 final size:42
Alignment explanation
Indices: 65618223--65618357 Score: 98
Period size: 42 Copynumber: 3.2 Consensus size: 42
65618213 CAAACGAGAG
65618223 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
* * * * * * * **
65618265 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACA-AAC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAGTGCAG-GA
*
65618308 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
65618351 AGGCAAG
1 AGGCAAG
65618358 ATCTGCTATC
Statistics
Matches: 63, Mismatches: 20, Indels: 20
0.61 0.19 0.19
Matches are distributed among these distances:
41 12 0.19
42 19 0.30
43 8 0.13
44 12 0.19
45 12 0.19
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (42 bp):
AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
Found at i:65618275 original size:86 final size:86
Alignment explanation
Indices: 65618148--65618583 Score: 719
Period size: 86 Copynumber: 5.1 Consensus size: 86
65618138 AAATCTGCCA
* * * * * *
65618148 TCTTCGATCTGCTTCACTGCCAAATACAGGAAAGCAAGATCTGATATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTA
*
65618213 CAAACGAGAGAGGCAAGGTTTG
65 CAAACGAGAGTGGCAAGGTTTG
*
65618235 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
65618300 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGTGGCAAGGTTTG
*
65618321 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
65618386 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGTGGCAAGGTTTG
65618407 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
65618472 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGTGGCAAGGTTTG
* * *
65618493 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
* * * *
65618558 GACCGAGAGAGGCAAGGTTTA
66 AAACGAGAGTGGCAAGGTTTG
65618579 TCTTC
1 TCTTC
65618584 AATTTTTACT
Statistics
Matches: 333, Mismatches: 16, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
86 314 0.94
87 19 0.06
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
AAACGAGAGTGGCAAGGTTTG
Found at i:65622723 original size:19 final size:20
Alignment explanation
Indices: 65622699--65622742 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
65622689 CGTGAAAGTC
* *
65622699 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
65622718 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
65622738 -AATGC
1 TAATGC
65622743 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:65625021 original size:12 final size:12
Alignment explanation
Indices: 65625004--65625034 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
65624994 TAGGTAAATA
65625004 ATATATATACAT
1 ATATATATACAT
65625016 ATATATATACAT
1 ATATATATACAT
65625028 ATATATA
1 ATATATA
65625035 ACTTAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATATATACAT
Found at i:65625733 original size:86 final size:81
Alignment explanation
Indices: 65625588--65625883 Score: 314
Period size: 75 Copynumber: 3.7 Consensus size: 81
65625578 GACTTTGGAN
* ** *
65625588 TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTGTTTTGAAAGACAT
1 TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACA-
65625653 AAATTGAACAGAAATTGAAAA
65 AAATT----AGAAATTGAAAA
* *
65625674 TACCTCAACGTGTCTTGAGGCTCAACCCACCTCTCGCAATATGAGTTGATTTTTTT----GA-AA
1 TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAA
65625734 AA-TAGAAATTGAAAA
66 AATTAGAAATTGAAAA
* ** *
65625749 TATCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT----GA-
1 TACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAC
* *
65625807 AAAA-CAGAAATTGAAAT
64 AAAATTAGAAATTGAAAA
*
65625824 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
1 TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
65625884 CAAAAATAAA
Statistics
Matches: 187, Mismatches: 15, Indels: 23
0.83 0.07 0.10
Matches are distributed among these distances:
73 35 0.19
75 60 0.32
77 33 0.18
79 1 0.01
80 3 0.02
81 1 0.01
82 2 0.01
86 52 0.28
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (81 bp):
TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAA
AATTAGAAATTGAAAA
Found at i:65625879 original size:75 final size:75
Alignment explanation
Indices: 65625659--65625883 Score: 346
Period size: 75 Copynumber: 3.0 Consensus size: 75
65625649 ACATAAATTG
* * *
65625659 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACCCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
65625724 TTTTTTGAAA
66 TTTTTTGAAA
* * * *
65625734 AATAGAAATTGAAAATATCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
65625799 A--TTTTTGAAA
64 ATTTTTTTGAAA
*
65625809 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
65625874 TTTTTTGAAA
66 TTTTTTGAAA
65625884 CAAAAATAAA
Statistics
Matches: 134, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
73 35 0.26
75 66 0.49
77 33 0.25
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (75 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGAAA
Found at i:65625885 original size:73 final size:73
Alignment explanation
Indices: 65625659--65625890 Score: 320
Period size: 73 Copynumber: 3.1 Consensus size: 73
65625649 ACATAAATTG
* * *
65625659 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACCCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
65625724 TTTTTTGAAA
66 TTTTTTG--A
* * * *
65625734 AATAGAAATTGAAAATATCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
***
65625799 ATTTTTGAAA
64 ATTTTTTTGA
*
65625809 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
65625874 TTTTTTGA
66 TTTTTTGA
*
65625882 AACAAAAAT
1 AACAGAAAT
65625891 AAAAACATCA
Statistics
Matches: 136, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
73 49 0.36
75 49 0.36
77 38 0.28
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (73 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGA
Found at i:65638888 original size:79 final size:79
Alignment explanation
Indices: 65638781--65638926 Score: 258
Period size: 79 Copynumber: 1.8 Consensus size: 79
65638771 ATAAAGTATG
*
65638781 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATGGTTTTAATTAATAATAAAAACAAAA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAAT-AAAACAAAA
65638846 TAGTATAAGGGAATA
65 TAGTATAAGGGAATA
*
65638861 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAGTAGTTTTAATTAATAATAAAACAAAAT
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAATAAAACAAAAT
65638925 AG
66 AG
65638927 CATGGGGGGA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
78 12 0.19
79 37 0.58
80 15 0.23
ACGTcount: A:0.51, C:0.03, G:0.16, T:0.31
Consensus pattern (79 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAATAAAACAAAAT
AGTATAAGGGAATA
Found at i:65638902 original size:39 final size:40
Alignment explanation
Indices: 65638781--65638934 Score: 249
Period size: 39 Copynumber: 3.9 Consensus size: 40
65638771 ATAAAGTATG
*
65638781 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
**
65638821 GTTTTAATTAATAATAAAAACAAAATAGTATAAGGGAATA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
*
65638861 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAGTA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
*
65638900 GTTTTAATTAATAAT-AAAACAAAATAGCATGGGGG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGG
65638935 GAGTGGAATC
Statistics
Matches: 107, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 55 0.51
40 52 0.49
ACGTcount: A:0.49, C:0.03, G:0.18, T:0.30
Consensus pattern (40 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
Found at i:65639671 original size:18 final size:20
Alignment explanation
Indices: 65639648--65639686 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
65639638 TTAATAGTTG
65639648 TTTCTAATA-GTATG-ATTA
1 TTTCTAATATGTATGTATTA
65639666 TTTCTAATATGTATGTATTA
1 TTTCTAATATGTATGTATTA
65639686 T
1 T
65639687 GTATTTACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
19 5 0.26
20 5 0.26
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.54
Consensus pattern (20 bp):
TTTCTAATATGTATGTATTA
Found at i:65642279 original size:8 final size:8
Alignment explanation
Indices: 65642266--65642302 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
65642256 CTAGATTGGC
65642266 AAAAGCCG
1 AAAAGCCG
65642274 AAAAGCCG
1 AAAAGCCG
65642282 AAAAGCCG
1 AAAAGCCG
*
65642290 AAATGCCG
1 AAAAGCCG
65642298 AAAAG
1 AAAAG
65642303 TCAGTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.51, C:0.22, G:0.24, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:65642759 original size:27 final size:27
Alignment explanation
Indices: 65642718--65642830 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
65642708 GAGGAAGCGT
*
65642718 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
65642745 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
65642772 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
65642800 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
65642826 TCTGG
1 TCTGG
65642831 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:65642823 original size:54 final size:54
Alignment explanation
Indices: 65642716--65642830 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
65642706 TGGAGGAAGC
*
65642716 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
65642770 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
65642824 GTTCTGG
1 GTTCTGG
65642831 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:65647716 original size:25 final size:25
Alignment explanation
Indices: 65647688--65647742 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
65647678 GGTTTAAAGA
65647688 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
* *
65647713 ATTCGCGCACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
65647738 ATTCG
1 ATTCG
65647743 TTATTACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:65647960 original size:40 final size:40
Alignment explanation
Indices: 65647906--65648106 Score: 312
Period size: 40 Copynumber: 5.0 Consensus size: 40
65647896 GATTACACAT
* * *
65647906 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
* * *
65647946 CATCAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
* *
65647986 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
* *
65648026 CACCAGCACGATTGCTCTTCGGGACTTAGCCCAGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
65648066 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
65648106 C
1 C
65648107 TCTCAATTCT
Statistics
Matches: 146, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
Found at i:65651576 original size:35 final size:35
Alignment explanation
Indices: 65651530--65651601 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
65651520 CAATATAAAA
*
65651530 TTATACAACCATCATAAGTAATTATTTATGTCTAT
1 TTATACAACCATCATAAGTAATTACTTATGTCTAT
65651565 TTATACAACCATCATAAGTAATTACTTATGTCTAT
1 TTATACAACCATCATAAGTAATTACTTATGTCTAT
65651600 TT
1 TT
65651602 TTAATATAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.36, C:0.15, G:0.06, T:0.43
Consensus pattern (35 bp):
TTATACAACCATCATAAGTAATTACTTATGTCTAT
Found at i:65662622 original size:205 final size:205
Alignment explanation
Indices: 65662247--65663223 Score: 1534
Period size: 205 Copynumber: 4.8 Consensus size: 205
65662237 AACAGGTCTG
* * * *
65662247 GCCTTCAGATG-TTAT-ACTGAAGCAGATCCAAAATGGTTTGGCATCCTTGTGTTTACAATGAGC
1 GCCTTCAGATGATT-TCATTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAAC
65662310 AAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGT
65 AAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGT
* *
65662375 CGTCTCTATATCGTTAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACA
130 CGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACA
*
65662440 TAGTAGATCTC
195 TAGCAGATCTC
* *
65662451 GCTTTCAGATGATTTCATTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACA
1 GCCTTCAGATGATTTCATTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACA
65662516 AATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTC
66 AATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTC
* *
65662581 GTCTCTATATCGTTAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACAT
131 GTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACAT
65662646 AGCAGATCTC
196 AGCAGATCTC
*
65662656 GCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACA
1 GCCTTCAGATGATTTCATTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACA
65662721 AATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTC
66 AATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTC
* *
65662786 GTCTCTGTATCGTCAGAGAACGAATCAAATTTTGGCATCTTCACTTTGATGGAGAGCAGACACAT
131 GTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACAT
*
65662851 AGTAGATCTC
196 AGCAGATCTC
* *
65662861 GCTTTCAGATGATTTCATTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACA
1 GCCTTCAGATGATTTCATTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACA
* *
65662926 AATCGAAGACATAGATGATTTGGCTTTCACGTGATTACGAAAAAGCAAATCTAAGATGATTTGTC
66 AATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTC
* *
65662991 ATCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGATACAT
131 GTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACAT
65663056 AGCAGATCTC
196 AGCAGATCTC
* * * * * * *
65663066 ACCTTCGGAT-ATTT-ATGCTGAAGCGGATCCAAGATGGTTTGGCATCTTTATGCTTACAAGGAG
1 GCCTTCAGATGATTTCAT--TGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAA
* * * * **
65663129 CAAATCGAA-TCATAG-TTATTTGGCTTTCACGTGCTTATGTTAAAGCAAATCTAAGATGATTTG
64 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTG
* * * * *
65663192 GCATCTCTGTATTGTCAGGGAACAAATCGAAG
129 TCGTCTCTGTATCGTCAGAGAACGAATCGAAG
65663224 AAATAGATTT
Statistics
Matches: 725, Mismatches: 44, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
203 73 0.10
204 20 0.03
205 632 0.87
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (205 bp):
GCCTTCAGATGATTTCATTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACA
AATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTC
GTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACAT
AGCAGATCTC
Found at i:65663372 original size:44 final size:44
Alignment explanation
Indices: 65663321--65663714 Score: 374
Period size: 44 Copynumber: 9.0 Consensus size: 44
65663311 GATTTCAGCA
*
65663321 TGGCATCCCTGTGCTTATAGGGAACA-AGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGATT
* *
65663365 TGGCATCCCTGTGCTTATAGGAAACAGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATT
** * * * * **
65663409 TAACATTCCTGTGCTTAGAGTGAAGAAGATCGAAGATTTC-GCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAG-ATT
* * *
65663452 TGGCATCCCTGTGCTTATAGGGAACA-AGTTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGATT
* * *
65663496 TGGCATCCTTGTGCTTATAGGGAACAGATCGAAGATAGCATATC
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATT
* * * * ** **
65663540 TGACATTCCTATGCTTACAGTAAAGCAGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAG-ATT
* * *
65663584 TGGCATCCCTGTGCTTATAGGGAACA-AGTTGAAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAGA-TCG-AAGATAGCAGATT
*
65663629 TGGCATCCCTATGCTTATAGGGAACAGATCGAAGATAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATT
* *
65663673 TGGCATCCCTGTGTTTATATGGAACAGATCGAAGA-AGCAGAT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGAT
65663715 CGAAGAACTC
Statistics
Matches: 278, Mismatches: 57, Indels: 31
0.76 0.16 0.08
Matches are distributed among these distances:
41 1 0.00
42 9 0.03
43 32 0.12
44 178 0.64
45 56 0.20
46 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATT
Found at i:65663453 original size:131 final size:132
Alignment explanation
Indices: 65663291--65663671 Score: 638
Period size: 131 Copynumber: 2.9 Consensus size: 132
65663281 CCTTTCTGAG
* *
65663291 TTACAGTGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGA
1 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
* * *
65663356 TAGCAGATTTGGCATCCCTGTGCTTATAGGAAACAGATCGAAGATAGCAGATCTAACATTCCTGT
66 CAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTAACATTCCTAT
65663421 GC
131 GC
* *
65663423 TTAGAGTGAAGAAGATCGAAGATTTC-GCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
1 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
* * *
65663487 CAGCAGATTTGGCATCCTTGTGCTTATAGGGAACAGATCGAAGATAGCATATCTGACATTCCTAT
66 CAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTAACATTCCTAT
65663552 GC
131 GC
*
65663554 TTACAGTAAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
1 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTG-AAA
*
65663619 ACAGCAGATTTGGCATCCCTATGCTTATAGGGAACAGATCGAAGATAGCAGAT
65 ACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGAT
65663672 TTGGCATCCC
Statistics
Matches: 231, Mismatches: 16, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
131 121 0.52
132 57 0.25
133 53 0.23
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
CAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTAACATTCCTAT
GC
Found at i:65663509 original size:87 final size:86
Alignment explanation
Indices: 65663365--65663531 Score: 203
Period size: 87 Copynumber: 1.9 Consensus size: 86
65663355 ATAGCAGATT
* * *
65663365 TGGCATCCCTGTGCTTATAGGAAACAGATCGAAGATAGCAGATCTAACATTCCTGTGCTTAGAGT
1 TGGCATCCCTGTGCTTATAGGAAACAGATCGAAAACAGCAGATCTAACATTCCTGTGCTTAGAGG
65663430 GAAGAAGATCGAAGATTTCGCA
66 GAA-AAGATCGAAGATTTCGCA
* * * ** *
65663452 TGGCATCCCTGTGCTTATAGGGAACA-AGTTGAAAACAGCAGATTTGGCA-TCCTTGTGCTTATA
1 TGGCATCCCTGTGCTTATAGGAAACAGA-TCGAAAACAGCAGATCTAACATTCC-TGTGCTTAGA
*
65663515 GGGAACAGATCGAAGAT
64 GGGAAAAGATCGAAGAT
65663532 AGCATATCTG
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
86 15 0.22
87 53 0.78
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (86 bp):
TGGCATCCCTGTGCTTATAGGAAACAGATCGAAAACAGCAGATCTAACATTCCTGTGCTTAGAGG
GAAAAGATCGAAGATTTCGCA
Found at i:65663715 original size:13 final size:13
Alignment explanation
Indices: 65663697--65663721 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65663687 TTATATGGAA
65663697 CAGATCGAAGAAG
1 CAGATCGAAGAAG
65663710 CAGATCGAAGAA
1 CAGATCGAAGAA
65663722 CTCAAAACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.28, T:0.08
Consensus pattern (13 bp):
CAGATCGAAGAAG
Found at i:65664042 original size:23 final size:23
Alignment explanation
Indices: 65664016--65664062 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
65664006 CTCAGTAAAG
65664016 TTTCATCTTGTCTATTTTAATAA
1 TTTCATCTTGTCTATTTTAATAA
*
65664039 TTTCATCTTGTCTATTTTGATAA
1 TTTCATCTTGTCTATTTTAATAA
65664062 T
1 T
65664063 CTTTTTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.13, G:0.06, T:0.57
Consensus pattern (23 bp):
TTTCATCTTGTCTATTTTAATAA
Found at i:65664503 original size:61 final size:63
Alignment explanation
Indices: 65664429--65664552 Score: 207
Period size: 61 Copynumber: 2.0 Consensus size: 63
65664419 CATTCATAGT
*
65664429 ACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCTT-A-ATTTGGCATAAGCATC
1 ACATCTAGCTAGGAGCATTTGATTCATTTTGATCATAGCATCTTAACATTTGGCATAAGCATC
*
65664490 ACATCTAGCTAGGAGCGTTTGATTCATTTTGATCATAGCATCTTAACTATTTGGCATAAGCAT
1 ACATCTAGCTAGGAGCATTTGATTCATTTTGATCATAGCATCTTAAC-ATTTGGCATAAGCAT
65664553 ATATACATGA
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
61 42 0.72
62 1 0.02
64 15 0.26
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (63 bp):
ACATCTAGCTAGGAGCATTTGATTCATTTTGATCATAGCATCTTAACATTTGGCATAAGCATC
Found at i:65665109 original size:134 final size:133
Alignment explanation
Indices: 65664657--65665185 Score: 688
Period size: 133 Copynumber: 4.0 Consensus size: 133
65664647 AGTAGGCTAC
* * * *
65664657 AAATTATAGATCTTATCTCCATGCATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCT
1 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCC
* * * * * *
65664722 ATGTATCGGCTATGGAGCAGCTTTTAACCACCAGTCTTATCCTTCTGAAGTTGCAGGAAGCAGGC
66 ATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCCTCCTGAGGTAGCAGGAAGCAGAC
65664787 TAA
131 TAA
* * *
65664790 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGTAGATAAAAAATGGCGAGTCTTATTTCC
1 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCC
* * *
65664855 ATGTATCGGCTATGGAGCAGATTTTGGCCACCAGTCTTATCCTCCTGAGATTA-CAGGAAGTAGA
66 ATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCCTCCTGAG-GTAGCAGGAAGCAGA
65664919 CTAA
130 CTAA
* * * *
65664923 AAATTACAGATCTTATCTCTATATATCGGCTATGGAGCAGATCAAAAATGGCGGGTCTTATCTCT
1 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCC
65664988 ATGTATCGGCTATGGAGCAGATTTTAGCCACCAG-CTTTAT-CTGCCTGAGGTAGCAAGGAAGCA
66 ATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTC-TTATCCT-CCTGAGGTAGC-AGGAAGCA
* **
65665051 GATTGC
128 GACTAA
* ** * *
65665057 AAATTATAGATCTTATCTTTATGTATCGACTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCC
1 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCC
* * * *
65665122 ATGTATCGGCTATGGAGTAGATTTTAGCCACCAGCCTTAT-CTCTCTGGGGTAGCAAGAGAGCAG
66 ATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCCTC-CTGAGGTAGCAGGA-AGCAG
65665186 GTTGAAGATA
Statistics
Matches: 349, Mismatches: 39, Indels: 15
0.87 0.10 0.04
Matches are distributed among these distances:
132 5 0.01
133 221 0.63
134 122 0.35
135 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (133 bp):
AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCC
ATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCCTCCTGAGGTAGCAGGAAGCAGAC
TAA
Found at i:65665231 original size:267 final size:264
Alignment explanation
Indices: 65664657--65665162 Score: 658
Period size: 267 Copynumber: 1.9 Consensus size: 264
65664647 AGTAGGCTAC
* * * *
65664657 AAATTATAGATCTTATCTCCATGCAT-CGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTC
1 AAATTACAGATCTTATCTCTAT--ATAC-GCTAAGGAGCAGATCGAAAATGGCGGGTCTTATCTC
* * * *
65664721 TATGTATCGGCTATGGAGCAGCTTTTAACCACCAGTCTTATCCTTCTGAAGTTGCAGGAAGCAGG
63 TATGTATCGGCTATGGAGCAGATTTTAACCACCAGTCTTATCCTCCTGAAGTAGCAGGAAGCAGA
* *
65664786 CTAAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGTAGATAAAAAATGGCGAGTCTTAT
128 CTAAAAATTACAGATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAGTCTTAT
* * * * * *
65664851 TTCCATGTATCGGCTATGGAGCAGATTTTGGCCACCAGTCTTATCCTCCTGAGATTACAGGAAGT
193 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCCTCCTGAGAGTACAAGAAGC
65664916 AGACTAA
258 AGACTAA
* *
65664923 AAATTACAGATCTTATCTCTATATATCGGCTATGGAGCAGATCAAAAATGGCGGGTCTTATCTCT
1 AAATTACAGATCTTATCTCTATATA-C-GCTAAGGAGCAGATCGAAAATGGCGGGTCTTATCTCT
* *
65664988 ATGTATCGGCTATGGAGCAGATTTTAGCCACCAG-CTTTAT-CTGCCTGAGGTAGCAAGGAAGCA
64 ATGTATCGGCTATGGAGCAGATTTTAACCACCAGTC-TTATCCT-CCTGAAGTAGC-AGGAAGCA
* ** * ** * *
65665051 GATTGCAAATTATAGATCTTATCTTTATGTATCGACTATGGAGCAGATCAGAAATGGCGAGTCTT
126 GACTAAAAATTACAGATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAGTCTT
*
65665116 ATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCAGCCTTATC
191 ATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATC
65665163 TCTCTGGGGT
Statistics
Matches: 211, Mismatches: 24, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
264 2 0.01
265 3 0.01
266 101 0.48
267 105 0.50
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (264 bp):
AAATTACAGATCTTATCTCTATATACGCTAAGGAGCAGATCGAAAATGGCGGGTCTTATCTCTAT
GTATCGGCTATGGAGCAGATTTTAACCACCAGTCTTATCCTCCTGAAGTAGCAGGAAGCAGACTA
AAAATTACAGATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAGTCTTATCTC
CATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCCTCCTGAGAGTACAAGAAGCAGA
CTAA
Found at i:65665654 original size:176 final size:177
Alignment explanation
Indices: 65665039--65665823 Score: 954
Period size: 178 Copynumber: 4.4 Consensus size: 177
65665029 TGCCTGAGGT
* * * *
65665039 AGCAAGGAAGCAGATTGCAAATTATAGATCTTATCTTTATGTATCGACTATGGAGCAGATCAGAA
1 AGCAAGGAAGCAGACTGAAAATTATAGATCTTATC-TCATGTATCGGCTATGGAGCAGATCAGAA
* * *
65665104 ATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTG
65 ATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAGCCACCAACCTTATCTCTCTG
* * * * ** *
65665169 GGGTAGCAAGAGAGCAGGTTGAAGATATGAGTCTTATCTTCCTGAAGT
130 AGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTGAAGC
* *
65665217 AGCAAGGAAGCAGATTGAAAATTATAGATCTTATCTCCATGGATCGGCTATGGAGCAGATCAGAA
1 AGCAAGGAAGCAGACTGAAAATTATAGATCTTATCT-CATGTATCGGCTATGGAGCAGATCAGAA
* * * * *
65665282 ATGGCGAGTCTTATCTCTATGTACCGGCTATGGAGCAGATTTTAGCCACTAACCTTATCTCTC-C
65 ATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAGCCACCAACCTTATCTCTCTG
* * ** *
65665346 AGGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTATCTTCCTGAAGT
130 A-GGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTGAAGC
* *
65665395 AGCAAGGAAGCAGACTGAAAATTATAGATTTTATCTTCATGTATCGACTATGGAGCAGATC-GAA
1 AGCAAGGAAGCAGACTGAAAATTATAGATCTTATC-TCATGTATCGGCTATGGAGCAGATCAGAA
** * * ** *
65665459 GATGGCGAGTCTTATCTCCATGTATCAACTATGAAGCAAATTTAAGCCACCGGCCTTATTTCTCT
65 -ATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAGCCACCAACCTTATCTCTCT
65665524 GAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCT-AAGC
129 GAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTGAAGC
* * * * * *
65665572 AGTAGGGTAA-CAGGCTGAAAATTGTAGATATTATCTCATGTATCGGCTATGGAACAGATC-GAA
1 AGCAAGG-AAGCAGACTGAAAATTATAGATCTTATCTCATGTATCGGCTATGGAGCAGATCAGAA
* *
65665635 GATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAGCTACCGACCTTATCTCTCT
65 -ATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAGCCACCAACCTTATCTCTCT
*
65665700 GAGGTAGCAAGAGAGTAGGTTGAAGATACGAGCCTTAACCCCCT-AAGC
129 GAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTGAAGC
* * * * * * * *
65665748 AGTAGGGTAA-CGGGCTGAAAATTACAGATCTTATCTCCATGTACCAGCTATGGAGAAGATCAGA
1 AGCAAGG-AAGCAGACTGAAAATTATAGATCTTATCT-CATGTATCGGCTATGGAGCAGATCAGA
* *
65665812 AAGGGCAAGTCT
64 AATGGCGAGTCT
65665824 ACTTGAAAAA
Statistics
Matches: 541, Mismatches: 58, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
176 163 0.30
177 63 0.12
178 313 0.58
179 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (177 bp):
AGCAAGGAAGCAGACTGAAAATTATAGATCTTATCTCATGTATCGGCTATGGAGCAGATCAGAAA
TGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTAAGCCACCAACCTTATCTCTCTGA
GGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTGAAGC
Found at i:65665693 original size:44 final size:45
Alignment explanation
Indices: 65665602--65665696 Score: 113
Period size: 45 Copynumber: 2.2 Consensus size: 45
65665592 ATTGTAGATA
** *
65665602 TTATCT-CATGTATCGGCTATGGAACAGATCGAAGATGGCGAGTC
1 TTATCTCCATGTATCGGCTATGGAACAGATCGAAGATACCGAGCC
* ** *
65665646 TTATCTCCATGTATCGGCTATGGAGCAGATTTAAGCTACCGA-CC
1 TTATCTCCATGTATCGGCTATGGAACAGATCGAAGATACCGAGCC
65665690 TTATCTC
1 TTATCTC
65665697 TCTGAGGTAG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 14 0.33
45 29 0.67
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (45 bp):
TTATCTCCATGTATCGGCTATGGAACAGATCGAAGATACCGAGCC
Found at i:65670933 original size:13 final size:13
Alignment explanation
Indices: 65670915--65670939 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65670905 TTCAACCATG
65670915 AAAAAATAAAAAT
1 AAAAAATAAAAAT
65670928 AAAAAATAAAAA
1 AAAAAATAAAAA
65670940 ACAATGAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:65671044 original size:14 final size:15
Alignment explanation
Indices: 65671020--65671048 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
65671010 AATTTACACT
65671020 ATTTATGAAATTTAA
1 ATTTATGAAATTTAA
65671035 ATTT-TGAAATTTAA
1 ATTTATGAAATTTAA
65671049 GTTCTCATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (15 bp):
ATTTATGAAATTTAA
Found at i:65671098 original size:17 final size:17
Alignment explanation
Indices: 65671072--65671124 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
65671062 ACTTTTGAAT
*
65671072 AAAATTCATAAAAATAA
1 AAAATACATAAAAATAA
*
65671089 AAAATACATACAAATAA
1 AAAATACATAAAAATAA
*
65671106 ATAATA-ATAGAAACATAA
1 AAAATACATA-AAA-ATAA
65671124 A
1 A
65671125 CATTTATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 3 0.10
17 22 0.73
18 5 0.17
ACGTcount: A:0.70, C:0.08, G:0.02, T:0.21
Consensus pattern (17 bp):
AAAATACATAAAAATAA
Found at i:65671451 original size:14 final size:14
Alignment explanation
Indices: 65671432--65671472 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
65671422 AATACAAATT
65671432 TTATTTATTGGTAA
1 TTATTTATTGGTAA
*
65671446 TTATTT-TTTGT-A
1 TTATTTATTGGTAA
*
65671458 TGATTTATTGGTAA
1 TTATTTATTGGTAA
65671472 T
1 T
65671473 GGTTTGGATG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
12 6 0.27
13 8 0.36
14 8 0.36
ACGTcount: A:0.24, C:0.00, G:0.15, T:0.61
Consensus pattern (14 bp):
TTATTTATTGGTAA
Found at i:65671561 original size:15 final size:17
Alignment explanation
Indices: 65671527--65671564 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
65671517 GGTTAAAAAG
65671527 TAATTTCATGATTTTAA
1 TAATTTCATGATTTTAA
*
65671544 TAATTT-AT-ATTTTTA
1 TAATTTCATGATTTTAA
65671559 TAATTT
1 TAATTT
65671565 TTAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 12 0.60
16 2 0.10
17 6 0.30
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (17 bp):
TAATTTCATGATTTTAA
Found at i:65676489 original size:15 final size:14
Alignment explanation
Indices: 65676462--65676501 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 14
65676452 ATCTTAACTT
65676462 TAATATTTATATTA
1 TAATATTTATATTA
65676476 TAATATTATATATTA
1 TAATATT-TATATTA
65676491 CTATATATTTA
1 -TA-ATATTTA
65676502 GTTTTTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 7 0.30
15 7 0.30
16 4 0.17
17 5 0.22
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
TAATATTTATATTA
Found at i:65679955 original size:23 final size:23
Alignment explanation
Indices: 65679920--65679990 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
65679910 TATCTAATAA
* *
65679920 ATATATATTTTTTATTTTTAATT
1 ATATATATATTTTAATTTTAATT
*
65679943 ATATTTATATTTTAATTTTAATT
1 ATATATATATTTTAATTTTAATT
* * * *
65679966 TTA-ATATA-ATCAATTTTTATT
1 ATATATATATTTTAATTTTAATT
65679987 ATAT
1 ATAT
65679991 TTTTCAAGTT
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
21 12 0.32
22 4 0.11
23 22 0.58
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.63
Consensus pattern (23 bp):
ATATATATATTTTAATTTTAATT
Found at i:65682574 original size:24 final size:24
Alignment explanation
Indices: 65682514--65682560 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
65682504 ATTATTATTA
*
65682514 AATAT-AAAAATTAATTTAAATTT
1 AATATGAAAAATTAAATTAAATTT
*
65682537 AATATGAACAATTAAATTAAATTT
1 AATATGAAAAATTAAATTAAATTT
65682561 TTTTGATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (24 bp):
AATATGAAAAATTAAATTAAATTT
Found at i:65684554 original size:21 final size:20
Alignment explanation
Indices: 65684530--65684589 Score: 57
Period size: 23 Copynumber: 2.7 Consensus size: 20
65684520 TTTAGGAAAA
*
65684530 ATATAAAAAATTATTATTTTT
1 ATATAAAAAATTATT-TTTTC
65684551 ATATATAAAATATTTATTTTTTC
1 ATATA-AAAA-A-TTATTTTTTC
65684574 ATCATAAAGAAATTAT
1 AT-ATAAA-AAATTAT
65684590 ATTAACGATA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
21 5 0.15
22 8 0.24
23 10 0.30
24 10 0.30
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (20 bp):
ATATAAAAAATTATTTTTTC
Found at i:65684557 original size:23 final size:23
Alignment explanation
Indices: 65684530--65684589 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 23
65684520 TTTAGGAAAA
65684530 ATATAAAAAATTATTA-TTTTT-
1 ATATAAAAAATTATTATTTTTTC
*
65684551 ATATATAAAA-TATTTATTTTTTC
1 ATATAAAAAATTA-TTATTTTTTC
65684574 ATCATAAAGAAATTAT
1 AT-ATAAA-AAATTAT
65684590 ATTAACGATA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
20 2 0.06
21 12 0.39
22 5 0.16
23 2 0.06
24 4 0.13
25 4 0.13
26 2 0.06
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (23 bp):
ATATAAAAAATTATTATTTTTTC
Found at i:65693955 original size:24 final size:24
Alignment explanation
Indices: 65693910--65693956 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
65693900 ATGCAACATA
**
65693910 TATTTATTGGATGCCATTAAACTC
1 TATTTATTGGATGCCAGCAAACTC
65693934 TATTTATTGGAT-CCTAGCAAACT
1 TATTTATTGGATGCC-AGCAAACT
65693957 GCTCAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (24 bp):
TATTTATTGGATGCCAGCAAACTC
Found at i:65695589 original size:16 final size:18
Alignment explanation
Indices: 65695570--65695606 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
65695560 TTTTTAAAAA
*
65695570 TTTAAAA-ATT-TATATT
1 TTTAAAAGATTATAAATT
65695586 TTTAAAAGATTATAAATT
1 TTTAAAAGATTATAAATT
65695604 TTT
1 TTT
65695607 TTAAATTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 3 0.17
18 8 0.44
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTAAAAGATTATAAATT
Found at i:65700190 original size:14 final size:13
Alignment explanation
Indices: 65700171--65700208 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
65700161 ATTTAATTCT
65700171 TAATTATATTAGGA
1 TAATTAT-TTAGGA
*
65700185 TAATTATTAAGGA
1 TAATTATTTAGGA
65700198 TAATTATTTAG
1 TAATTATTTAG
65700209 ATTTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TAATTATTTAGGA
Found at i:65700256 original size:20 final size:19
Alignment explanation
Indices: 65700227--65700270 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
65700217 TTAGGATTTC
65700227 TTTTTATTATCTT-TAATTA
1 TTTTTATTAT-TTGTAATTA
*
65700246 TTTTTATTTATTTGTATTTA
1 TTTTTA-TTATTTGTAATTA
65700266 TTTTT
1 TTTTT
65700271 TAGAATTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (19 bp):
TTTTTATTATTTGTAATTA
Found at i:65706673 original size:16 final size:16
Alignment explanation
Indices: 65706641--65706701 Score: 61
Period size: 16 Copynumber: 3.7 Consensus size: 16
65706631 AGGCAACCCA
* *
65706641 ATTTTTATTTCTCTTT
1 ATTTTTATTTTTATTT
65706657 ATTTTTATTTTTATTT
1 ATTTTTATTTTTATTT
*
65706673 ATTATTT-TATTTTAATT
1 ATT-TTTAT-TTTTATTT
65706690 ATTTATTATTTT
1 ATTT-TTATTTT
65706702 ATCTTAATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
16 19 0.50
17 18 0.47
18 1 0.03
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.75
Consensus pattern (16 bp):
ATTTTTATTTTTATTT
Found at i:65706682 original size:18 final size:19
Alignment explanation
Indices: 65706659--65706717 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 19
65706649 TTCTCTTTAT
65706659 TTTTATTT-TTATTTATTA
1 TTTTATTTATTATTTATTA
65706677 TTTTATTTTAATTATTTATTA
1 TTTTA-TTT-ATTATTTATTA
65706698 TTTTATCTTAATTATTTATT
1 TTTTAT-TT-ATTATTTATT
65706718 TGATTTTGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.14
19 3 0.08
20 1 0.03
21 28 0.76
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTATTTATTATTTATTA
Found at i:65706691 original size:17 final size:16
Alignment explanation
Indices: 65706658--65706702 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
65706648 TTTCTCTTTA
*
65706658 TTTTTATTTTTATTTAT
1 TTTTTA-TTTTAATTAT
65706675 TATTTTATTTTAATTAT
1 T-TTTTATTTTAATTAT
*
65706692 TTATTATTTTA
1 TTTTTATTTTA
65706703 TCTTAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 9 0.36
17 11 0.44
18 5 0.20
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTATTTTAATTAT
Found at i:65706692 original size:14 final size:12
Alignment explanation
Indices: 65706654--65706718 Score: 59
Period size: 12 Copynumber: 5.6 Consensus size: 12
65706644 TTTATTTCTC
65706654 TTTATTT-TTATT
1 TTTATTTATTA-T
65706666 TTTATTTATTAT
1 TTTATTTATTAT
65706678 TTTA-TT-TTA-
1 TTTATTTATTAT
*
65706687 ATTATTTATTAT
1 TTTATTTATTAT
65706699 TTTATCTTAATTA-
1 TTTAT-TT-ATTAT
65706712 TTTATTT
1 TTTATTT
65706719 GATTTTGGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
9 3 0.07
10 5 0.11
11 5 0.11
12 18 0.40
13 10 0.22
14 4 0.09
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTATTTATTAT
Found at i:65706693 original size:21 final size:21
Alignment explanation
Indices: 65706667--65706717 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
65706657 ATTTTTATTT
*
65706667 TTATTTATTATTTTATTTTAA
1 TTATTTATTATTTTATCTTAA
65706688 TTATTTATTATTTTATCTTAA
1 TTATTTATTATTTTATCTTAA
65706709 TTATTTATT
1 TTATTTATT
65706718 TGATTTTGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (21 bp):
TTATTTATTATTTTATCTTAA
Found at i:65709456 original size:96 final size:97
Alignment explanation
Indices: 65709290--65709469 Score: 290
Period size: 96 Copynumber: 1.9 Consensus size: 97
65709280 TAGGAATGTA
* * * *
65709290 TTGGGCTGAGTAACCGGGGTGAGGTGCTTGATTGTCATCTCTCTTCGCGTTAAAAGGTTCGATAT
1 TTGGGCTGAGTAACCGGGGTGAGGTGCTTGACTATCATCTCTCTTCGCGTCAAAAGGTTCAATAT
*
65709355 GTTCTTAAGC-AAAATAAAAATTAAGAGTATG
66 ATTCTTAAGCAAAAATAAAAATTAAGAGTATG
* *
65709386 TTGGGCTGAGTAACCGGGGTGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAAAAGGTTCAATAT
1 TTGGGCTGAGTAACCGGGGTGAGGTGCTTGACTATCATCTCTCTTCGCGTCAAAAGGTTCAATAT
65709451 ATTCTTAAGCAAAAATAAA
66 ATTCTTAAGCAAAAATAAA
65709470 TAAATAAAAT
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
96 68 0.89
97 8 0.11
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (97 bp):
TTGGGCTGAGTAACCGGGGTGAGGTGCTTGACTATCATCTCTCTTCGCGTCAAAAGGTTCAATAT
ATTCTTAAGCAAAAATAAAAATTAAGAGTATG
Found at i:65710099 original size:14 final size:13
Alignment explanation
Indices: 65710080--65710117 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
65710070 ATTTAATGTT
65710080 TAATTATATTAGGA
1 TAATTAT-TTAGGA
*
65710094 TAATTATTAAGGA
1 TAATTATTTAGGA
65710107 TAATTATTTAG
1 TAATTATTTAG
65710118 ATTTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TAATTATTTAGGA
Found at i:65710146 original size:10 final size:10
Alignment explanation
Indices: 65710131--65710172 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
65710121 TAATTTTAGG
65710131 ATTTATTTTT
1 ATTTATTTTT
*
65710141 ATTTATCTTT
1 ATTTATTTTT
*
65710151 ATTTATTTAT
1 ATTTATTTTT
65710161 ATTTATCTTTT
1 ATTTAT-TTTT
65710172 A
1 A
65710173 GAATTTAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
10 23 0.85
11 4 0.15
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:65710156 original size:20 final size:20
Alignment explanation
Indices: 65710131--65710170 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
65710121 TAATTTTAGG
*
65710131 ATTTATTTTTATTTATCTTT
1 ATTTATTTATATTTATCTTT
65710151 ATTTATTTATATTTATCTTT
1 ATTTATTTATATTTATCTTT
65710171 TAGAATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (20 bp):
ATTTATTTATATTTATCTTT
Found at i:65712118 original size:336 final size:333
Alignment explanation
Indices: 65711495--65712151 Score: 795
Period size: 336 Copynumber: 2.0 Consensus size: 333
65711485 TAGTTTAGAG
* * * * *
65711495 TTTAGGAGATGATGGTATGTGGTGTGTTAATAGTTTAATTACAATTCATTCATATGAACTATGCT
1 TTTAGAAGATGATGGTATGTGGCGTGTTAATAATTGAATTACAATTCATTCACATGAACTATGCT
* * * *
65711560 TGACATTTTAAGGTTAATGTTTGCCCACAAACATGTTTCTAAATAGTTAAAGAAAACCCTTATGG
66 TGACATTTCAAGGCTAATGTTTGACCACAAACATGTTTCTAAATAATTAAAGAAAACCCTTATGG
* * * * * *
65711625 CAAATGGCATGGCCAGTCTTCAAGTTTGCAACAACATTGAATTGGTCTAAGTTCAATTAGGTGGT
131 CAAATGACATGACCAGTCTTCAAGTTTGCAACAACA-TAAATTGGTCCAAGTTCAATCAGGTGAT
* * * * *
65711690 TTAGATCAAATAGAGTGTTTACCATATAATTGTAGAAATTATATTCATAGCAATCGGAGGCTAAT
195 CTAGATCAAATAGAGTGTTTACCATAGAATTGTAGAAATTATATTCATAGCAACCAGAAGCTAAT
* * * **
65711755 CGTGCAAGAGGGGGATGTAGAGTATTTGTACAAGTTTTCTTTTGTGAAATGCAAAATAAAGATAG
260 CGTGCAAGAAGGGGATATAGAGTATTTGAACAA-TTTT-TTTT-CAAAATGCAAAATAAAGATAG
65711820 GGTTAATGTTGT
322 GGTTAATGTTGT
* * * *
65711832 TTTAGAAGGTGATGGTATGTGGCGTGTTCATAATTGAATTATAATTCATTTACATGAACTATTTG
1 TTTAGAAGATGATGGTATGTGGCGTGTTAATAATTGAATTACAATTCATTCACATGAACTA--TG
**
65711897 CTTGACATTTCAAGGCTAAT-TTCT-ACCATGAACATGTTTCT-AATCAATTAAAGAAAACCCTT
64 CTTGACATTTCAAGGCTAATGTT-TGACCACAAACATGTTTCTAAAT-AATTAAAGAAAACCCTT
* * * *
65711959 GA-GGCAAATGACATGACCGGTCTTCGAGTTTGCTAGAAC-TAAATTGGTCCAAGTTCAATCAGG
127 -ATGGCAAATGACATGACCAGTCTTCAAGTTTGCAACAACATAAATTGGTCCAAGTTCAATCAGG
* * * *
65712022 TGATCTAGATCCAATGGAGTGTTTACC-TGAGAGTTGTAGAAATTATATTCATGGCAACCAGAAG
191 TGATCTAGATCAAATAGAGTGTTTACCAT-AGAATTGTAGAAATTATATTCATAGCAACCAGAAG
* * * *
65712086 TTGATCGTGCAAGAAGGGGATATTGAGTATTTGAATAATTTTTTTTCAAAATGCAAAATAAAGAT
255 CTAATCGTGCAAGAAGGGGATATAGAGTATTTGAACAATTTTTTTTCAAAATGCAAAATAAAGAT
65712151 A
320 A
65712152 AAAACTTTTT
Statistics
Matches: 271, Mismatches: 43, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
333 18 0.07
334 4 0.01
335 5 0.02
336 104 0.38
337 55 0.20
338 63 0.23
339 22 0.08
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (333 bp):
TTTAGAAGATGATGGTATGTGGCGTGTTAATAATTGAATTACAATTCATTCACATGAACTATGCT
TGACATTTCAAGGCTAATGTTTGACCACAAACATGTTTCTAAATAATTAAAGAAAACCCTTATGG
CAAATGACATGACCAGTCTTCAAGTTTGCAACAACATAAATTGGTCCAAGTTCAATCAGGTGATC
TAGATCAAATAGAGTGTTTACCATAGAATTGTAGAAATTATATTCATAGCAACCAGAAGCTAATC
GTGCAAGAAGGGGATATAGAGTATTTGAACAATTTTTTTTCAAAATGCAAAATAAAGATAGGGTT
AATGTTGT
Found at i:65712551 original size:22 final size:24
Alignment explanation
Indices: 65712523--65712566 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
65712513 CACATTATTT
65712523 TTTTTGTTC-TAT-TTCTTCTTGG
1 TTTTTGTTCTTATGTTCTTCTTGG
65712545 TTTTTGTTCTTATGTTCTTCTT
1 TTTTTGTTCTTATGTTCTTCTT
65712567 TTTGCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 9 0.45
23 3 0.15
24 8 0.40
ACGTcount: A:0.05, C:0.14, G:0.11, T:0.70
Consensus pattern (24 bp):
TTTTTGTTCTTATGTTCTTCTTGG
Found at i:65716840 original size:12 final size:12
Alignment explanation
Indices: 65716823--65716855 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
65716813 ATTTTGAATT
65716823 GCGCACGGTTGA
1 GCGCACGGTTGA
65716835 GCGCACGGTTGA
1 GCGCACGGTTGA
*
65716847 GCACACGGT
1 GCGCACGGT
65716856 CTAGTGACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.18, C:0.27, G:0.39, T:0.15
Consensus pattern (12 bp):
GCGCACGGTTGA
Found at i:65723541 original size:7 final size:7
Alignment explanation
Indices: 65723529--65723572 Score: 88
Period size: 7 Copynumber: 6.3 Consensus size: 7
65723519 AATAGGGCTT
65723529 GCACCAA
1 GCACCAA
65723536 GCACCAA
1 GCACCAA
65723543 GCACCAA
1 GCACCAA
65723550 GCACCAA
1 GCACCAA
65723557 GCACCAA
1 GCACCAA
65723564 GCACCAA
1 GCACCAA
65723571 GC
1 GC
65723573 TTCAAGCTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.41, C:0.43, G:0.16, T:0.00
Consensus pattern (7 bp):
GCACCAA
Found at i:65738915 original size:35 final size:35
Alignment explanation
Indices: 65738870--65739151 Score: 343
Period size: 35 Copynumber: 8.1 Consensus size: 35
65738860 CACGATTCAC
* * *
65738870 AACTCAGTATGGTTAATACCATACCTACGTTTCAC
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
* * * * * *
65738905 AAATCGGTATGAGA-AATACCATACATACATATTAT
1 AACTCAGTATG-GATAATACCATACCTACGTGTCAT
* * ** *
65738940 AGCTCAGTATGGATAATATCATATGTACGTATCAT
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
*
65738975 AACTTAGTATGGATAATACCATACCTACGTGTCAT
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
* * *
65739010 AACTCATTATGGATAATAACATACCTACCTGTCAT
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
* *
65739045 AACTCATTATGGATAATACCATACCTACGTATCAT
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
65739080 AACTCAGTA-GAGATAATACCATACCTACGTGTCAT
1 AACTCAGTATG-GATAATACCATACCTACGTGTCAT
*
65739115 AACTCAGTATGGATAATACCATACCTACATGTCAT
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
65739150 AA
1 AA
65739152 TTTTTCCATG
Statistics
Matches: 211, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
34 3 0.01
35 206 0.98
36 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (35 bp):
AACTCAGTATGGATAATACCATACCTACGTGTCAT
Found at i:65739057 original size:105 final size:105
Alignment explanation
Indices: 65738870--65739151 Score: 379
Period size: 105 Copynumber: 2.7 Consensus size: 105
65738860 CACGATTCAC
* * * * * *
65738870 AACTCAGTATGGTTAATACCATACCTACGTTTCACAAATCGGTATGAGA-AATACCATACATACA
1 AACTCAGTATGGATAATACCATACCTACGTGTCATAACTCAGTATG-GATAATACCATACCTACA
* * * * **
65738934 TATTATAGCTCAGTATGGATAATATCATATGTACGTATCAT
65 TGTCATAACTCAGTATGGATAATACCATACCTACGTATCAT
* * * *
65738975 AACTTAGTATGGATAATACCATACCTACGTGTCATAACTCATTATGGATAATAACATACCTACCT
1 AACTCAGTATGGATAATACCATACCTACGTGTCATAACTCAGTATGGATAATACCATACCTACAT
*
65739040 GTCATAACTCATTATGGATAATACCATACCTACGTATCAT
66 GTCATAACTCAGTATGGATAATACCATACCTACGTATCAT
65739080 AACTCAGTA-GAGATAATACCATACCTACGTGTCATAACTCAGTATGGATAATACCATACCTACA
1 AACTCAGTATG-GATAATACCATACCTACGTGTCATAACTCAGTATGGATAATACCATACCTACA
65739144 TGTCATAA
65 TGTCATAA
65739152 TTTTTCCATG
Statistics
Matches: 154, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
104 3 0.02
105 151 0.98
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (105 bp):
AACTCAGTATGGATAATACCATACCTACGTGTCATAACTCAGTATGGATAATACCATACCTACAT
GTCATAACTCAGTATGGATAATACCATACCTACGTATCAT
Found at i:65739171 original size:70 final size:67
Alignment explanation
Indices: 65738965--65739172 Score: 215
Period size: 70 Copynumber: 3.0 Consensus size: 67
65738955 ATATCATATG
* *
65738965 TACGTATCATAACTTAGTATGGATAATACCATACCTACGTGTCATAACTCATT-ATGGATAATAA
1 TACGTGTCATAACTCAGTATGGATAATACCATACCTACGTGTCATAA-T--TTCATGGAT--TAA
65739029 -CATACC
61 CCATACC
* * * * *
65739035 TACCTGTCATAACTCATTATGGATAATACCATACCTACGTATCATAA-CTCAGTAGAGATAATAC
1 TACGTGTCATAACTCAGTATGGATAATACCATACCTACGTGTCATAATTTCA-T-G-GATTA-AC
65739099 CATACC
62 CATACC
*
65739105 TACGTGTCATAACTCAGTATGGATAATACCATACCTACATGTCATAATTTTTCCATGGATTAACC
1 TACGTGTCATAACTCAGTATGGATAATACCATACCTACGTGTCATAA--TTT-CATGGATTAACC
65739170 ATA
63 ATA
65739173 GTCTTATCTG
Statistics
Matches: 115, Mismatches: 13, Indels: 20
0.78 0.09 0.14
Matches are distributed among these distances:
66 1 0.01
67 1 0.01
68 2 0.02
69 2 0.02
70 100 0.87
71 4 0.03
72 1 0.01
73 2 0.02
74 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (67 bp):
TACGTGTCATAACTCAGTATGGATAATACCATACCTACGTGTCATAATTTCATGGATTAACCATA
CC
Found at i:65749026 original size:26 final size:26
Alignment explanation
Indices: 65748995--65749102 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
65748985 ATGAAATGCC
*
65748995 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
65749021 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * * *
65749047 GTCATGGAATATTTATCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
65749073 ATCATGGGACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
65749099 ATCA
1 ATCA
65749103 ATTTGTACCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:65752090 original size:23 final size:23
Alignment explanation
Indices: 65752008--65752094 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
65751998 CCTGATCAGT
*
65752008 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
65752030 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
65752050 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
65752073 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
65752095 TCAATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:65753565 original size:16 final size:17
Alignment explanation
Indices: 65753530--65753565 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
65753520 CCTAATTCTC
65753530 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
65753546 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
65753561 CCTTC
1 CCTTC
65753566 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:65753632 original size:20 final size:22
Alignment explanation
Indices: 65753594--65753640 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
65753584 TATTCTGTTT
*
65753594 CTTTTCTTTGTTCTTTACTTTA
1 CTTTTCTTTGTTATTTACTTTA
65753616 -TTTTCTTT-TTATTTACTTTA
1 CTTTTCTTTGTTATTTACTTTA
65753636 CTTTT
1 CTTTT
65753641 AATAATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.11, C:0.15, G:0.02, T:0.72
Consensus pattern (22 bp):
CTTTTCTTTGTTATTTACTTTA
Found at i:65759942 original size:23 final size:23
Alignment explanation
Indices: 65759860--65759946 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
65759850 CCTGATCAGT
*
65759860 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
65759882 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
65759902 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
65759925 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
65759947 TCAGTAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:65760398 original size:16 final size:17
Alignment explanation
Indices: 65760363--65760398 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
65760353 CCTAATTCTC
65760363 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
65760379 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
65760394 CCTTC
1 CCTTC
65760399 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:65764562 original size:35 final size:35
Alignment explanation
Indices: 65764517--65764798 Score: 350
Period size: 35 Copynumber: 8.1 Consensus size: 35
65764507 CACGATTCAC
* * * * *
65764517 AACTCAGTATGGTTAATACCATAGCTATGTTTCAC
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
* * * * *
65764552 AACTCGGTATGGGA-AATACCATACCTATGTATTAG
1 AACTCAGTAT-GGATAATACCATACCTACGTGTCAT
* * *
65764587 AGCTCAGTATGGATAATACCATACTTACGTATCAT
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
*
65764622 AACTTAGTATGGATAATACCATACCTACGTGTCAT
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
*
65764657 AACTCAGTATGGATAATACCATACCTACGTATCAT
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
** *
65764692 AACTCAGTATGGATAATATTATACTTACGTGTCAT
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
* *
65764727 AACTCAGTATGGATAATACTATACCTACTTGTCAT
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
**
65764762 AACTCAGTATGGATAATACCATACCTATATGTCAT
1 AACTCAGTATGGATAATACCATACCTACGTGTCAT
65764797 AA
1 AA
65764799 TTTTTCCATG
Statistics
Matches: 217, Mismatches: 28, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
34 3 0.01
35 212 0.98
36 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (35 bp):
AACTCAGTATGGATAATACCATACCTACGTGTCAT
Found at i:65773767 original size:43 final size:41
Alignment explanation
Indices: 65773700--65773826 Score: 150
Period size: 44 Copynumber: 3.0 Consensus size: 41
65773690 CTTGTACAAC
*
65773700 GCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCACT
1 GCCAACGTCCCAGACGTGGTCTTACACG-AATCACATATCA-T
*
65773743 GCC-ACTGTCCCAGACAG-GGTCTTACACGAAAATCACAAATCGAT
1 GCCAAC-GTCCCAGAC-GTGGTCTTACACG--AATCACATATC-AT
*
65773787 GCCAACATCCCAGACGTGGTCTTACACGAATCACATATCA
1 GCCAACGTCCCAGACGTGGTCTTACACGAATCACATATCA
65773827 GATTCCTATG
Statistics
Matches: 73, Mismatches: 5, Indels: 14
0.79 0.05 0.15
Matches are distributed among these distances:
41 1 0.01
42 12 0.16
43 23 0.32
44 34 0.47
45 3 0.04
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (41 bp):
GCCAACGTCCCAGACGTGGTCTTACACGAATCACATATCAT
Found at i:65774184 original size:26 final size:26
Alignment explanation
Indices: 65774147--65774204 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
65774137 TGATACAAAT
65774147 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
65774173 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
65774199 TGATAA
1 TGATAA
65774205 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:65787909 original size:63 final size:64
Alignment explanation
Indices: 65787764--65787974 Score: 158
Period size: 63 Copynumber: 3.3 Consensus size: 64
65787754 CCTTAATGGA
* * * * * * * * * * * *
65787764 AAACAGTGAGTCACACGGCCT-GGACAAATGCCCGTGTCACTAGCCAATGTGGTTTTTAATAAC
1 AAACAGTGAGTTACATGGCCTAGAACACACGCCCGTATCGCTGGCCCATGTGATCTTTAATAGC
* * ** * * * * *
65787827 AAATAGTGAGTCATTTGGCCTAG-ACACACGCTCGTATCTCTGGCCCGTGTGGTCTTTCATAGC
1 AAACAGTGAGTTACATGGCCTAGAACACACGCCCGTATCGCTGGCCCATGTGATCTTTAATAGC
* * * * * *
65787890 AAACATTGAGTTACATGGCCT-GAACATATGCCCGTGTCGCTGGCTCATGTGATCTTTAATGGC
1 AAACAGTGAGTTACATGGCCTAGAACACACGCCCGTATCGCTGGCCCATGTGATCTTTAATAGC
65787953 AAACAGTGAGTTACATGGCCTA
1 AAACAGTGAGTTACATGGCCTA
65787975 CCACACGGCC
Statistics
Matches: 114, Mismatches: 31, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
62 1 0.01
63 112 0.98
64 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (64 bp):
AAACAGTGAGTTACATGGCCTAGAACACACGCCCGTATCGCTGGCCCATGTGATCTTTAATAGC
Found at i:65797649 original size:20 final size:19
Alignment explanation
Indices: 65797609--65797650 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
65797599 GGTTAAATCA
*
65797609 TTGTTTTAAAATTTATTTT
1 TTGTTTTAAAATTCATTTT
65797628 TTGTTTATAAAA-TCATTATT
1 TTGTTT-TAAAATTCATT-TT
65797648 TTG
1 TTG
65797651 AAAGTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (19 bp):
TTGTTTTAAAATTCATTTT
Found at i:65798357 original size:22 final size:22
Alignment explanation
Indices: 65798332--65798384 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
65798322 CATGAAGCAA
65798332 CCCCATACC-CCTACTACAACAG
1 CCCCATACCTCC-ACTACAACAG
65798354 CCCCATACCTCCACTACAACAG
1 CCCCATACCTCCACTACAACAG
*
65798376 TCCCATACC
1 CCCCATACC
65798385 GTCTGACACT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 27 0.93
23 2 0.07
ACGTcount: A:0.30, C:0.51, G:0.04, T:0.15
Consensus pattern (22 bp):
CCCCATACCTCCACTACAACAG
Found at i:65811829 original size:88 final size:86
Alignment explanation
Indices: 65811632--65811930 Score: 278
Period size: 88 Copynumber: 3.4 Consensus size: 86
65811622 TGTTTTAATT
* * *
65811632 TCAACTCATATTGCGAAAAGTGAGTTGAGCCTCAGGACACACGCCGAGGTATTTTCAATTAAGC-
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACA--CCGAGGTATTTTCAATT--TCT
* * * *
65811696 CTTTTGATTTCTGTTTTTCAAAAAAA
62 GTTTTCATTTATGTTTTT-AAAAGAA
* * * *
65811722 TTAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCCATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
*
65811787 TCATTATTATGTTTTTGAAAGAA
66 TCA-T-TTATGTTTTTAAAAGAA
* **** *
65811810 TCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGACAGGTTGAGGTATTTT-AGATTTCTGTC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCA-ATTTCTGTT
* * *
65811874 GTCAGTTTATGTTTTAAAAAAAGGA
65 TTCA-TTTATGTTTT--TAAAAGAA
* *
65811899 TCAGCTTATATTGCGAGAGGTGAGTTGAGCCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65811931 TTTAATTTCT
Statistics
Matches: 173, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
86 1 0.01
87 14 0.08
88 79 0.46
89 43 0.25
90 36 0.21
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (86 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
TCATTTATGTTTTTAAAAGAA
Found at i:65812060 original size:75 final size:75
Alignment explanation
Indices: 65811954--65812423 Score: 809
Period size: 75 Copynumber: 6.1 Consensus size: 75
65811944 TTTCAAAAAA
65811954 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
65812019 GCTTTTCAAG
66 GCTTTTCAAG
*
65812029 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAA----T
*
65812094 GTTCAATTTATGTTTTTC-A-
62 -TTC------TGCTTTTCAAG
65812113 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
65812178 GCTTTTCAAG
66 GCTTTTCAAG
65812188 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
65812253 GCTTTTCAAG
66 GCTTTTCAAG
65812263 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
65812328 GCTTTTCAAG
66 GCTTTTCAAG
65812338 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
65812403 GCTTTTCAAG
66 GCTTTTCAAG
65812413 AAAATCAACTC
1 AAAATCAACTC
65812424 TCATGCCGAG
Statistics
Matches: 378, Mismatches: 4, Indels: 26
0.93 0.01 0.06
Matches are distributed among these distances:
73 7 0.02
74 1 0.00
75 295 0.78
79 4 0.01
80 4 0.01
84 59 0.16
85 1 0.00
86 7 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
GCTTTTCAAG
Found at i:65812484 original size:123 final size:125
Alignment explanation
Indices: 65812316--65812546 Score: 430
Period size: 123 Copynumber: 1.9 Consensus size: 125
65812306 CATTGAGGTA
*
65812316 TTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTAAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
65812381 CATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCTCATGCCGAGGTATTTC
66 CATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCTCATGCCGAGGTATTTC
*
65812441 TTTTAAATTTTTG-TTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTAAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
65812504 CATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTC
66 CATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTC
65812547 ATATTGCGAG
Statistics
Matches: 104, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
123 86 0.83
124 7 0.07
125 11 0.11
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (125 bp):
TTTTAAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCTCATGCCGAGGTATTTC
Found at i:65812556 original size:75 final size:73
Alignment explanation
Indices: 65812446--65814132 Score: 1074
Period size: 73 Copynumber: 22.7 Consensus size: 73
65812436 ATTTCTTTTA
* **
65812446 AATTTTTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAG
1 AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
*
65812511 GTATTTTC
66 GTAATTTC
**
65812519 AATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTG
1 AATTTCTG-TTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
*
65812584 AGGTATTTTC
64 AGGTAATTTC
**
65812594 AATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTG
1 AATTTCTG-TTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
*
65812659 AGGTATTTTC
64 AGGTAATTTC
**
65812669 AATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTG
1 AATTTCTG-TTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
*
65812734 AGGTATTTTC
64 AGGTAATTTC
**
65812744 AATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTG
1 AATTTCTG-TTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
*
65812809 AGGTATTTTC
64 AGGTAATTTC
*
65812819 AATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 AATTTCTG-TTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
65812884 AGGTAATTTC
64 AGGTAATTTC
** * *
65812894 AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCC
1 AATTTCTG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGCT
*
65812958 GAGGTATTTTC
63 GAGGTAATTTC
* ** * *
65812969 AAAGTCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTT
1 -AA-----TTT--C----TGT-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T
** *** * *
65813034 TTA-A-TTTCT-A-CT-TTTTC
52 CAAGACACGCTGAGGTAATTTC
** * * * ** * ** * *** * * * *** **
65813051 AAGATCAGCTCATATTGCTAGAGGTGAGTTGAGCCT-CGGGGCACGCTGAGGT-ATTTTCAATTT
1 AATTTCTG-T--T-TT-CAAAAAATCAACTCATATTGC-GAG-A-GGTGAGTTGAGCCTCAA-GA
*** * *
65813114 TTTG-TGTGTTTTAATTTC
57 CACGCTGAG--GTAATTTC
* * * * * ** * ** * ** * * * ** * *** * *
65813132 AA-CTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGT-ATTTTCAAAGTC-T
1 AATTTC-TGTTTTCAAAAAATCAACTCA-TATTGCG--AGA-GGTGAGTTGAGCCTC-AAGACAC
** * *
65813193 G-TTTGGCAAATTC
60 GCTGAGGTAATTTC
**** * * * * * * *
65813206 --TGTT-T-TCAAAAATCAACTCATATTGCGAGA--G-GTG-GGTTGAG-C----CTCAGGACAC
1 AAT-TTCTGTTTTCAA-AAAATCA-ACT-C-ATATTGCGAGAGG-TGAGTTGAGCCTCAAGACAC
65813258 GCTGAGGTAATTTC
60 GCTGAGGTAATTTC
* ** *
65813272 AATTTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
65813337 GGTAATTTC
65 GGTAATTTC
* * ** * ** * * *
65813346 AATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTAAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
65813411 GTAATTTC
66 GTAATTTC
* * ** * ** * *
65813419 AATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
65813484 GTAATTTC
66 GTAATTTC
* * ** * ** * *
65813492 AATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
65813557 GTAATTTC
66 GTAATTTC
* * ** * ** * *
65813565 AATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
65813630 GTAATTTC
66 GTAATTTC
* * ** * ** * *
65813638 AATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
65813703 GTAATTTC
66 GTAATTTC
* *
65813711 AATTTTTGTTTTTC--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGAACACGCTA
1 AATTTCTG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGCTG
65813773 AGGTAATTTC
64 AGGTAATTTC
65813783 AATTTCTGTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGAACACGCT
1 AATTTCTG--TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGCT
*
65813846 AAGGTAATTTC
63 GAGGTAATTTC
65813857 AATTTCTGTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGAACACGCT
1 AATTTCTG--TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGCT
*
65813920 AAGGTAATTTC
63 GAGGTAATTTC
65813931 AATTTCTGTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGAACACGCT
1 AATTTCTG--TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGCT
*
65813994 AAGGTAATTTC
63 GAGGTAATTTC
*
65814005 AATTTCTGTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC-AGAACACGCT
1 AATTTCTG--TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGCT
*
65814068 GAGGTAATTTT
63 GAGGTAATTTC
* * *
65814079 AATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCA
1 AATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
65814133 GTTCACATGT
Statistics
Matches: 1410, Mismatches: 134, Indels: 138
0.84 0.08 0.08
Matches are distributed among these distances:
64 3 0.00
65 3 0.00
66 10 0.01
67 3 0.00
68 6 0.00
69 15 0.01
70 2 0.00
71 2 0.00
72 63 0.04
73 412 0.29
74 390 0.28
75 398 0.28
76 18 0.01
77 18 0.01
78 2 0.00
80 3 0.00
81 11 0.01
82 5 0.00
83 2 0.00
84 1 0.00
85 2 0.00
86 2 0.00
87 4 0.00
88 34 0.02
89 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (73 bp):
AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
GTAATTTC
Found at i:65812749 original size:348 final size:356
Alignment explanation
Indices: 65812098--65814132 Score: 1412
Period size: 348 Copynumber: 5.6 Consensus size: 356
65812088 ATTCCTGTTC
*
65812098 AATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGA
1 AATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGA
65812162 GGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 GGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
65812227 GACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGT
131 GACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGT
65812292 TGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCG
196 TGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCG
65812357 AGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAAC
261 AGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAAC
*
65812422 TC-TCA-TGC-CGAGGT-A-TT-T-C-TTTTA
326 TCAT-ATTGCGAGAGGTGAGTTCTACATTTTA
*
65812446 AATTTTTG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGA
1 AATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGA
65812510 GGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 GGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
65812575 GACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGT
131 GACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGT
65812640 TGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCG
196 TGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCG
65812705 AGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAAC
261 AGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAAC
*
65812770 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTC
326 TCATATTGCGAGAGGTGAGTT----CT------AC--------ATTTTA
* * **
65812819 AATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 AATTTATGCTTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTG
* * *
65812884 AGGTAATTTCAATTTCTGTTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
65 AGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* * * *
65812947 GGTCACATGCCGAGGTATTTTCAAAGTCTGTTTGGCAAATTCTGTTTTC-A-AAAATCAACTCAT
130 AGACACAT--TGAGGTATTTTC-AA-----TTT--C---TGC--TTTTCAAGAAAATCAACTCAT
* *
65813010 ATTGCGAGAGGTGGGTT--G-----A-AC-C---------TTTT-AATTTCTACTTTTTCAAG--
180 ATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGC-TTTTCAAGAA
* * ** * ** *
65813054 -ATCAGCTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTG
244 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAA-TTTCTG
** **
65813118 -TGTGTT--TTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGT
308 CT-T-TTCAAGAAAATCAACTCATATTGCGAGAGGTGAG-T-----TC---T---A---C-----
65813180 ATTTTCA
351 ATTTT-A
* *
65813187 AAGTCTGTTTGGCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTC
1 AA-----TTT-----ATGC--TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* ** * * * **
65813251 AGGACACGCTGAGGTAATTTCAATTTTTG-TTTTCAAAAAAATCAACTCATATTGCGAGAAATGA
54 AAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGA
* ** * * * ** *
65813315 GTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTG-TTTTCCA-AATTTCAACTCATGTTG
119 GTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTG
** * * * ** * * * **
65813378 CGAGAAATGGGTTAAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTG-TTTTCCA-AATTTCA
184 CGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCA
* ** * * ** * *
65813441 ACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTG-TTTTC
249 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTC
* ** * * * *
65813505 CA-AATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATTTC
314 AAGAAAATCAACTCATATTGCGAG--A--GG-TGAG-TTC----TA--C--A--T--TTTA
* * ** * ** * * **
65813565 AATTTTTG-TTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGA
1 AATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGA
* * * ** * ** * *
65813629 GGTAATTTCAATTTTTG-TTTTCCA-AATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAG
66 GGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
** * * *
65813692 GACACGCTGAGGTAATTTCAATTTTTGTTTTTC---AAAATCAACTCATATTGCGAGAGGTGAGT
131 GACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGT
** * * *
65813754 TGAGCCTC-AGAACACGCTAAGGTAATTTCAATTTCTGTTTTTTC-A-AAAATCAACTCATATTG
196 TGAGCCTCAAG-ACACATTGAGGTATTTTCAATTTCTG-CTTTTCAAGAAAATCAACTCATATTG
** * * *
65813816 CGAGAGGTGAGTTGAGCCTC-AGAACACGCTAAGGTAATTTCAATTTCTGTTTTTTC-A-AAAAT
259 CGAGAGGTGAGTTGAGCCTCAAG-ACACATTGAGGTATTTTCAATTTCTG-CTTTTCAAGAAAAT
*
65813878 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTAAGGTAATTTC
322 CAACTCATATTGCGAGAGGTGAGTT----CT------A--C--A--T--TTTA
* * **
65813931 AATTTCTGTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGAACACGCT
1 AATTTATG-CTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACATT
* * * *
65813994 AAGGTAATTTCAATTTCTGTTTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
64 GAGGTATTTTCAATTTCTG-CTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
** * * * *
65814057 C-AGAACACGCTGAGGTAATTTT-AATTTCTG-TTGTCAAAAAAATCAACTCATATTGCGAAAAG
128 CAAG-ACACATTGAGGT-ATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGG
65814119 TGAGTTGAGCCTCA
191 TGAGTTGAGCCTCA
65814133 GTTCACATGT
Statistics
Matches: 1413, Mismatches: 135, Indels: 255
0.78 0.07 0.14
Matches are distributed among these distances:
347 5 0.00
348 320 0.23
349 4 0.00
350 5 0.00
351 1 0.00
352 2 0.00
357 1 0.00
360 1 0.00
361 4 0.00
362 2 0.00
363 6 0.00
364 84 0.06
365 200 0.14
366 129 0.09
367 90 0.06
368 70 0.05
369 9 0.01
370 37 0.03
371 4 0.00
372 2 0.00
373 61 0.04
374 8 0.01
375 79 0.06
376 4 0.00
377 17 0.01
378 72 0.05
379 46 0.03
380 7 0.00
381 32 0.02
382 12 0.01
383 55 0.04
384 1 0.00
385 2 0.00
386 35 0.02
387 1 0.00
388 5 0.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (356 bp):
AATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGA
GGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAAC
TCATATTGCGAGAGGTGAGTTCTACATTTTA
Found at i:65813102 original size:215 final size:217
Alignment explanation
Indices: 65812839--65813245 Score: 703
Period size: 217 Copynumber: 1.9 Consensus size: 217
65812829 TTTCAAGAAA
65812839 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA-TTTCTGT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTCTGT
65812903 -T-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATT
66 GTGTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATT
65812966 TTCAAAGTCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAAC
130 TTCAAAGTCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAAC
65813031 CTTTTAATTTCTACTTTTTCAAG
195 CTTTTAATTTCTACTTTTTCAAG
* * * * * *
65813054 ATCAGCTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTGT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTCTGT
* **
65813119 GTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTT
66 GTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTT
65813184 TCAAAGTCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGA
131 TCAAAGTCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGA
65813246 GCCTCAGGAC
Statistics
Matches: 180, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
215 52 0.29
216 6 0.03
217 119 0.66
218 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (217 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTCTGT
GTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTT
TCAAAGTCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACC
TTTTAATTTCTACTTTTTCAAG
Found at i:65813411 original size:73 final size:73
Alignment explanation
Indices: 65813206--65814133 Score: 1250
Period size: 74 Copynumber: 12.7 Consensus size: 73
65813196 TGGCAAATTC
** *
65813206 TGTTTT-CAAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
65813270 TCAATTTT
66 TCAATTTT
*
65813278 TGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
1 TGTTTTC-CAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
65813343 TTCAATTTT
65 TTCAATTTT
** * * *
65813352 TGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTAAGCCTCAGGACACGCTGAGGTAATT
1 TGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
65813417 TCAATTTT
66 TCAATTTT
** * *
65813425 TGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
65813490 TCAATTTT
66 TCAATTTT
** * *
65813498 TGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
65813563 TCAATTTT
66 TCAATTTT
** * *
65813571 TGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
65813636 TCAATTTT
66 TCAATTTT
** * *
65813644 TGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
65813709 TCAATTTT
66 TCAATTTT
* ** * *
65813717 TGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTAAGGTAATT
1 TGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
*
65813781 TCAATTTC
66 TCAATTTT
* ** * *
65813789 TGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTAAGGTAAT
1 TG-TTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
*
65813854 TTCAATTTC
65 TTCAATTTT
* ** * *
65813863 TGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTAAGGTAAT
1 TG-TTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
*
65813928 TTCAATTTC
65 TTCAATTTT
* ** * *
65813937 TGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTAAGGTAAT
1 TG-TTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
*
65814002 TTCAATTTC
65 TTCAATTTT
* ** * *
65814011 TGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGAACACGCTGAGGTAAT
1 TG-TTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
* *
65814076 TTTAATTTC
65 TTCAATTTT
* *
65814085 TGTTGTCAAAAAAATCAACTCATATTGCGA-AAAGTGAGTTGAGCCTCAG
1 TGTTTTC-CAAAAATCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCAG
65814134 TTCACATGTT
Statistics
Matches: 820, Mismatches: 30, Indels: 10
0.95 0.03 0.01
Matches are distributed among these distances:
72 63 0.08
73 368 0.45
74 389 0.47
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (73 bp):
TGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
TCAATTTT
Found at i:65813494 original size:146 final size:146
Alignment explanation
Indices: 65813203--65814133 Score: 1265
Period size: 146 Copynumber: 6.3 Consensus size: 146
65813193 GTTTGGCAAA
**
65813203 TTCTGTTTT-CAAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTCAGGACACGCTGAGGTA
1 TTCTGTTTTCCAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTA
* *
65813267 ATTTCAATTTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC
66 ATTTCAATTTTTGTTTTC-CAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACAC
65813332 GCTGAGGTAATTTCAAT
130 GCTGAGGTAATTTCAAT
* ** * *
65813349 TTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTAAGCCTCAGGACACGCTGAGGTA
1 TTCTGTTTTCCAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTA
** * * *
65813414 ATTTCAATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACG
66 ATTTCAATTTTTGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACACG
65813479 CTGAGGTAATTTCAAT
131 CTGAGGTAATTTCAAT
* ** *
65813495 TTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTA
1 TTCTGTTTTCCAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTA
** * * *
65813560 ATTTCAATTTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACG
66 ATTTCAATTTTTGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACACG
65813625 CTGAGGTAATTTCAAT
131 CTGAGGTAATTTCAAT
* ** *
65813641 TTTTGTTTTCCAAATTTCAACTCATGTTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTA
1 TTCTGTTTTCCAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTA
* **
65813706 ATTTCAATTTTTGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACG
66 ATTTCAATTTTTGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACACG
*
65813770 CTAAGGTAATTTCAAT
131 CTGAGGTAATTTCAAT
* ** * * *
65813786 TTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTAAGGT
1 TTCTG-TTTTCCAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGT
* * **
65813851 AATTTCAATTTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACA
65 AATTTCAATTTTTG-TTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACA
*
65813916 CGCTAAGGTAATTTCAAT
129 CGCTGAGGTAATTTCAAT
* ** * * *
65813934 TTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTAAGGT
1 TTCTG-TTTTCCAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGT
* * ** *
65813999 AATTTCAATTTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGAACA
65 AATTTCAATTTTTG-TTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACA
*
65814064 CGCTGAGGTAATTTTAAT
129 CGCTGAGGTAATTTCAAT
* * *
65814082 TTCTGTTGTCAAAAAAATCAACTCATATTGCGA-AAAGTGAGTTGAGCCTCAG
1 TTCTGTTTTC-CAAAAATCAACTCATATTGCGAGAAA-TGGGTTGAGCCTCAG
65814134 TTCACATGTT
Statistics
Matches: 738, Mismatches: 41, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
145 57 0.08
146 357 0.48
147 77 0.10
148 247 0.33
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (146 bp):
TTCTGTTTTCCAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTA
ATTTCAATTTTTGTTTTCCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACACG
CTGAGGTAATTTCAAT
Found at i:65814891 original size:22 final size:22
Alignment explanation
Indices: 65814866--65814918 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
65814856 CATGAAGCAA
65814866 CCCCATACCCCCACAACAACAG
1 CCCCATACCCCCACAACAACAG
* *
65814888 CCCCATACCTCCACTACAACAG
1 CCCCATACCCCCACAACAACAG
*
65814910 TCCCATACC
1 CCCCATACC
65814919 GTCTGACACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.32, C:0.53, G:0.04, T:0.11
Consensus pattern (22 bp):
CCCCATACCCCCACAACAACAG
Found at i:65817142 original size:130 final size:130
Alignment explanation
Indices: 65816905--65817224 Score: 479
Period size: 130 Copynumber: 2.5 Consensus size: 130
65816895 TAATTATTCA
* * *
65816905 TTTAAAAATTCTTTAAAGCGAAAGCAATGTTCGATGCTTGAGAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAGCGAAGGCAATGTTCGATGTTTGAGAATTCGGAGAATCGTGCCCTATC
* *
65816970 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCTCTCATGT
66 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCCAATATTCCTTTAGAATTTCACTCATGT
*
65817035 TTTAAAAATTCTTTAAAGCGAAGGCAATGTTCGATGTTTGAGAATTCGGAGAATCGTGCCCTATG
1 TTTAAAAATTCTTTAAAGCGAAGGCAATGTTCGATGTTTGAGAATTCGGAGAATCGTGCCCTATC
* *
65817100 GTGTTGGGTTGCAATTTCCCTTTTGTTCAAAATAATCCAATATTCCTTTAGAATTTCACTCATGT
66 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCCAATATTCCTTTAGAATTTCACTCATGT
* * * *
65817165 TTTAAAAATTC--TAAAAC-AAGGCAATGTTCAATGTCT-AGAAATTC-GAGGAATCGTGACCTA
1 TTTAAAAATTCTTTAAAGCGAAGGCAATGTTCGATGTTTGAG-AATTCGGA-GAATCGTGCCCTA
65817225 CTGTCCTGGG
Statistics
Matches: 176, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
126 4 0.02
127 34 0.19
128 5 0.03
130 133 0.76
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (130 bp):
TTTAAAAATTCTTTAAAGCGAAGGCAATGTTCGATGTTTGAGAATTCGGAGAATCGTGCCCTATC
GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCCAATATTCCTTTAGAATTTCACTCATGT
Found at i:65827905 original size:40 final size:40
Alignment explanation
Indices: 65827827--65827905 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
65827817 CACTTAAAGA
* *
65827827 GGGAAAGAGGCCAAAGTGAAAACTCGCAAAGGGCGCTTTG
1 GGGAAAGAGGCCAAAGTGAAAACCCACAAAGGGCGCTTTG
* * *
65827867 GGGAAAGAGGTCAAAGTGAAAACCCACATAGGGTGCTTT
1 GGGAAAGAGGCCAAAGTGAAAACCCACAAAGGGCGCTTT
65827906 AAGACCTTCC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.35, C:0.16, G:0.33, T:0.15
Consensus pattern (40 bp):
GGGAAAGAGGCCAAAGTGAAAACCCACAAAGGGCGCTTTG
Found at i:65828831 original size:44 final size:42
Alignment explanation
Indices: 65828782--65828920 Score: 111
Period size: 44 Copynumber: 3.2 Consensus size: 42
65828772 TAGAGCGGAT
*
65828782 CGAAGACAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGG
1 CGAAGATAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAA-AGG
* * ** * * * *
65828825 CTGAAGATTGT-AGATCTTGTCTCCCTAAGCAGTACTGGAGCAAA-T
1 C-GAAGATAGTGAG-CCTTAACCCCCTAAGTAGTA--GG-GTAAAGG
65828870 CGAAGATAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAATAGG
1 CGAAGATAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAA-AGG
65828913 CCGAAGAT
1 -CGAAGAT
65828921 TGTAGATCTT
Statistics
Matches: 70, Mismatches: 17, Indels: 17
0.67 0.16 0.16
Matches are distributed among these distances:
41 3 0.04
42 3 0.04
43 3 0.04
44 52 0.74
45 3 0.04
46 3 0.04
47 3 0.04
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.22
Consensus pattern (42 bp):
CGAAGATAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAAAGG
Found at i:65828897 original size:88 final size:88
Alignment explanation
Indices: 65828748--65828941 Score: 307
Period size: 88 Copynumber: 2.2 Consensus size: 88
65828738 GTGAATTCAC
* **
65828748 AGATCTTATCTCCCTAAGCAATAGTAGAGCGGATCGAAGACAGTGAGCCTTAACCCCCTAAGTAG
1 AGATCTTATCTCCCTAAGCAATACTAGAGCAAATCGAAGACAGTGAGCCTTAACCCCCTAAGTAG
*
65828813 TAGGGTAACAGGCTGAAGATTGT
66 TAGGGTAACAGGCCGAAGATTGT
* * * *
65828836 AGATCTTGTCTCCCTAAGCAGTACTGGAGCAAATCGAAGATAGTGAGCCTTAACCCCCTAAGTAG
1 AGATCTTATCTCCCTAAGCAATACTAGAGCAAATCGAAGACAGTGAGCCTTAACCCCCTAAGTAG
*
65828901 TAGGGTAATAGGCCGAAGATTGT
66 TAGGGTAACAGGCCGAAGATTGT
65828924 AGATCTTATCTCCCTAAG
1 AGATCTTATCTCCCTAAG
65828942 TTGCAATTGA
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 96 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (88 bp):
AGATCTTATCTCCCTAAGCAATACTAGAGCAAATCGAAGACAGTGAGCCTTAACCCCCTAAGTAG
TAGGGTAACAGGCCGAAGATTGT
Found at i:65828939 original size:44 final size:43
Alignment explanation
Indices: 65828803--65828942 Score: 124
Period size: 44 Copynumber: 3.2 Consensus size: 43
65828793 AGCCTTAACC
* *
65828803 CCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCT
1 CCCTAAGTAGTAGGGTAA-AGGCCGAAGATTGTAGATCTTATCT
* * * * * * *
65828847 CCCTAAGCAGTACTGGAGCAAA--TCGAAGATAGT-GAGCCTTAACC
1 CCCTAAGTAGTA--GG-GTAAAGGCCGAAGATTGTAGA-TCTTATCT
65828891 CCCTAAGTAGTAGGGTAATAGGCCGAAGATTGTAGATCTTATCT
1 CCCTAAGTAGTAGGGTAA-AGGCCGAAGATTGTAGATCTTATCT
65828935 CCCTAAGT
1 CCCTAAGT
65828943 TGCAATTGAG
Statistics
Matches: 72, Mismatches: 16, Indels: 16
0.69 0.15 0.15
Matches are distributed among these distances:
41 3 0.04
42 3 0.04
43 2 0.03
44 56 0.78
45 2 0.03
46 3 0.04
47 3 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (43 bp):
CCCTAAGTAGTAGGGTAAAGGCCGAAGATTGTAGATCTTATCT
Found at i:65831932 original size:130 final size:129
Alignment explanation
Indices: 65831699--65832018 Score: 477
Period size: 130 Copynumber: 2.5 Consensus size: 129
65831689 TAATTATTCA
* * *
65831699 TTTAAAAATTCTTTAAAGCGAAGGCAATGTTCGATGCTTAAGAATTCGAGGAACCGTACCCTATC
1 TTTAAAAATTCTTTAAAGCGAAGGCAATGTTCGATG-TTTAGAATTCGAGGAATCGTGCCCTATC
* *
65831764 GTGCTGGGTTACATTTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCTCTCATGT
65 GTGCTGGGTTACAATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
*
65831829 TTTAAAAATTCTTTAAAGCGAAGGAAATGTTCGATGTTTGAGAATTCG-GAGAATCGTGCCCTAT
1 TTTAAAAATTCTTTAAAGCGAAGGCAATGTTCGATGTTT-AGAATTCGAG-GAATCGTGCCCTAT
* *
65831893 CGTGCTGGGTTGCAATTTCCCTTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATG
64 CGTGCTGGGTTACAATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATG
65831958 T
129 T
* * *
65831959 TTTAAAAATTC--TAAAAC-AAGGCAATGTTCAATGTCTAGAAATTCGAGGAATCGTGCCCTA
1 TTTAAAAATTCTTTAAAGCGAAGGCAATGTTCGATGTTTAG-AATTCGAGGAATCGTGCCCTA
65832019 CTGTGTTGGG
Statistics
Matches: 174, Mismatches: 12, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
126 2 0.01
127 35 0.20
128 6 0.03
129 3 0.02
130 128 0.74
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (129 bp):
TTTAAAAATTCTTTAAAGCGAAGGCAATGTTCGATGTTTAGAATTCGAGGAATCGTGCCCTATCG
TGCTGGGTTACAATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
Found at i:65833413 original size:17 final size:17
Alignment explanation
Indices: 65833371--65833425 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
65833361 CCTAACAGAC
* *
65833371 CTCGCACCTTAGGTGA-
1 CTCGCAGCTTTGGTGAG
*
65833387 CTTCGTAGCTTTGGTGAG
1 C-TCGCAGCTTTGGTGAG
65833405 CTCGCAGCTTTGGATGAG
1 CTCGCAGCTTTGG-TGAG
65833423 CTC
1 CTC
65833426 TCTCGCAGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 1 0.03
17 23 0.72
18 8 0.25
ACGTcount: A:0.15, C:0.25, G:0.29, T:0.31
Consensus pattern (17 bp):
CTCGCAGCTTTGGTGAG
Found at i:65835416 original size:31 final size:31
Alignment explanation
Indices: 65835380--65835443 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
65835370 TATGTTGTTC
65835380 ATAATTCCTTTTCATTGTAGGGCATAAGTTA
1 ATAATTCCTTTTCATTGTAGGGCATAAGTTA
65835411 ATAATTCCTTTTCATTGTAGGGCATAAGTTA
1 ATAATTCCTTTTCATTGTAGGGCATAAGTTA
65835442 AT
1 AT
65835444 TATGTTATTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (31 bp):
ATAATTCCTTTTCATTGTAGGGCATAAGTTA
Found at i:65835459 original size:28 final size:30
Alignment explanation
Indices: 65835380--65835456 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 30
65835370 TATGTTGTTC
*
65835380 ATAATTCCTTTTCATTGTAGGGCATAAGTTA
1 ATAATT-CTATTCATTGTAGGGCATAAGTTA
*
65835411 ATAATTCCTTTTCATTGTAGGGCATAAGTTA
1 ATAATT-CTATTCATTGTAGGGCATAAGTTA
*
65835442 ATTATGT-TATTCATT
1 ATAAT-TCTATTCATT
65835457 AGGTTGTTGA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
30 7 0.16
31 35 0.81
32 1 0.02
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (30 bp):
ATAATTCTATTCATTGTAGGGCATAAGTTA
Found at i:65838335 original size:17 final size:18
Alignment explanation
Indices: 65838305--65838350 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
65838295 ATTTAAATTG
65838305 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
65838323 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
65838339 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
65838351 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:65843897 original size:20 final size:20
Alignment explanation
Indices: 65843872--65843919 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
65843862 ATTAAATATA
65843872 TTTATTAATTTAGT-TTGGAT
1 TTTATTAATTTA-TCTTGGAT
*
65843892 TTTATTTATTTATCTTGGAT
1 TTTATTAATTTATCTTGGAT
65843912 TATTATTA
1 T-TTATTA
65843920 TTATTGCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 18 0.75
21 5 0.21
ACGTcount: A:0.25, C:0.02, G:0.10, T:0.62
Consensus pattern (20 bp):
TTTATTAATTTATCTTGGAT
Found at i:65844215 original size:27 final size:27
Alignment explanation
Indices: 65844163--65844217 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
65844153 TTCGACTATT
*
65844163 TTTTTTTCCAAAATATAATTATTTTAA
1 TTTTTTTCCAAAATATAATTAATTTAA
* *
65844190 TTTTTTTCCATAAT-TATTTTAATTTAA
1 TTTTTTTCCAAAATATA-ATTAATTTAA
65844217 T
1 T
65844218 ATTTAGTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (27 bp):
TTTTTTTCCAAAATATAATTAATTTAA
Found at i:65849563 original size:29 final size:29
Alignment explanation
Indices: 65849506--65849563 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
65849496 ACGGCCGCCC
* * *
65849506 ACACAGCTTGGCACACGGCTGTGTAGCTT
1 ACACAGCCTGGCACACGCCCGTGTAGCTT
65849535 ACACAGCCTGGACACACGCCCGTGT-GCTT
1 ACACAGCCTGG-CACACGCCCGTGTAGCTT
65849564 GGCCTTATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.21, C:0.33, G:0.26, T:0.21
Consensus pattern (29 bp):
ACACAGCCTGGCACACGCCCGTGTAGCTT
Found at i:65850096 original size:19 final size:19
Alignment explanation
Indices: 65850056--65850098 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
65850046 AAAGAAGCAG
*
65850056 AAGAAGAAAAGGAGAAATA
1 AAGAAGAAAAGGAGAAAAA
*
65850075 AAGAGAGAAAGGGA-AAAAA
1 AAGA-AGAAAAGGAGAAAAA
65850094 AAGAA
1 AAGAA
65850099 AAAGAGTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 12 0.57
20 8 0.38
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (19 bp):
AAGAAGAAAAGGAGAAAAA
Found at i:65856275 original size:44 final size:44
Alignment explanation
Indices: 65856209--65856296 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
65856199 AATCTAACTT
65856209 AGAAAAGTATATTGCTTAGCCTAACTCATCTAAGAGCTCTTCAA
1 AGAAAAGTATATTGCTTAGCCTAACTCATCTAAGAGCTCTTCAA
* * * *
65856253 AGAAAAGTTTATTGTTTGGCCTAACTCATCTAGGAGCTCTTCAA
1 AGAAAAGTATATTGCTTAGCCTAACTCATCTAAGAGCTCTTCAA
65856297 TTAGAGAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (44 bp):
AGAAAAGTATATTGCTTAGCCTAACTCATCTAAGAGCTCTTCAA
Found at i:65865394 original size:67 final size:67
Alignment explanation
Indices: 65865284--65865418 Score: 216
Period size: 67 Copynumber: 2.0 Consensus size: 67
65865274 ATACTTTGAG
* * * *
65865284 TTGGTTCACTTTTCTGTCCGATATAAGGTATTTGACAAAAAGGCGAAATGAATGTTTTTCTGTGT
1 TTGGTTCACCTTTCTGTCCGATATAAGGTATTTGACAAAAAGGCGAAATGAATGCTTTTATATGT
65865349 GT
66 GT
* *
65865351 TTGGTTCACCTTTCTGTCCGATATAAGGTATTTGACAATAAGGCGAAATGCATGCTTTTATATGT
1 TTGGTTCACCTTTCTGTCCGATATAAGGTATTTGACAAAAAGGCGAAATGAATGCTTTTATATGT
65865416 GT
66 GT
65865418 T
1 T
65865419 CTATCTATGG
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.40
Consensus pattern (67 bp):
TTGGTTCACCTTTCTGTCCGATATAAGGTATTTGACAAAAAGGCGAAATGAATGCTTTTATATGT
GT
Found at i:65885233 original size:34 final size:34
Alignment explanation
Indices: 65885190--65885257 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
65885180 ACAGCTTCAA
* *
65885190 TTGCTAACTAACTAGCTGTATGAGCTATGCTATT
1 TTGCTAACTAACTAACTGTATGAGCTATACTATT
65885224 TTGCTAACTAACTAACTGTATGAGCTATACTATT
1 TTGCTAACTAACTAACTGTATGAGCTATACTATT
65885258 GATCTCTAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (34 bp):
TTGCTAACTAACTAACTGTATGAGCTATACTATT
Found at i:65891486 original size:2 final size:2
Alignment explanation
Indices: 65891479--65891503 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
65891469 TGATATGATA
65891479 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
65891504 GGTAAACTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:65894262 original size:25 final size:25
Alignment explanation
Indices: 65894205--65894260 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
65894195 TTAAAGTTAA
65894205 AATAAATATTTAATTAAAAATTTTC
1 AATAAATATTTAATTAAAAATTTTC
*
65894230 AATAAATATTTTATTAAAAATTTTC
1 AATAAATATTTAATTAAAAATTTTC
65894255 ATATAA
1 A-ATAA
65894261 TAGAGTAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 25 0.86
26 4 0.14
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (25 bp):
AATAAATATTTAATTAAAAATTTTC
Found at i:65899023 original size:7 final size:7
Alignment explanation
Indices: 65899013--65899051 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
65899003 AGGGTTTTAA
65899013 GTTTGGG
1 GTTTGGG
65899020 GTTTGGG
1 GTTTGGG
65899027 GTTTGGG
1 GTTTGGG
* *
65899034 GTTTAGT
1 GTTTGGG
*
65899041 GTTTGTG
1 GTTTGGG
65899048 GTTT
1 GTTT
65899052 AGTTAGAGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.03, C:0.00, G:0.46, T:0.51
Consensus pattern (7 bp):
GTTTGGG
Found at i:65899044 original size:14 final size:14
Alignment explanation
Indices: 65899013--65899054 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
65899003 AGGGTTTTAA
* *
65899013 GTTTGGGGTTTGGG
1 GTTTGGGGTTTAGT
65899027 GTTTGGGGTTTAGT
1 GTTTGGGGTTTAGT
*
65899041 GTTTGTGGTTTAGT
1 GTTTGGGGTTTAGT
65899055 TAGAGTTTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.05, C:0.00, G:0.45, T:0.50
Consensus pattern (14 bp):
GTTTGGGGTTTAGT
Found at i:65901659 original size:25 final size:26
Alignment explanation
Indices: 65901627--65901678 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
65901617 AGCAGAACTA
* *
65901627 TTTTG-TTTTCAAATTATTTTTAAAT
1 TTTTGTTTTTCAAAATATTTATAAAT
*
65901652 TTTTGTTTTTGAAAATATTTATAAAT
1 TTTTGTTTTTCAAAATATTTATAAAT
65901678 T
1 T
65901679 AGTTACACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.62
Consensus pattern (26 bp):
TTTTGTTTTTCAAAATATTTATAAAT
Found at i:65902234 original size:99 final size:99
Alignment explanation
Indices: 65902127--65902516 Score: 408
Period size: 99 Copynumber: 3.8 Consensus size: 99
65902117 TTTTGTTCTC
*
65902127 TTTTATTTTATTTTCAA-ATTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATT
1 TTTTATTTTATTTT-AACATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATT
* *
65902191 TTATTTTTTTTGAATCACGAAAAATAATTTTAACA
65 TTATTTTTTTTGAATCACGAAAAATAATTTCAATA
* ** * *
65902226 TTTTATTTTATTTTAAATATTTTATTTTATTTTAACATTACCTAATTA-AATTAAATCGTATTTA
1 TTTTATTTTATTTT-AACA--TTA-CCTA-ATTAA-ATTA---AATTATATTTAAA--GT-TTT-
** * * *
65902290 AAGTTTTATTTTAAATATTTCATTTATTTT-AATCACAAAAAATAATTTCATTA
53 -A-TTTTA-AAT--AT-TTT-ATTTTTTTTGAATCACGAAAAATAATTTCAATA
*
65902343 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTT
*
65902408 CATTTTTTTTGAATCACGAAAAATAATTTCAATA
66 TATTTTTTTTGAATCACGAAAAATAATTTCAATA
** *
65902442 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTC
1 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTT
65902507 TATTTTTTTT
66 TATTTTTTTT
65902517 CACTTTAATT
Statistics
Matches: 241, Mismatches: 28, Indels: 44
0.77 0.09 0.14
Matches are distributed among these distances:
98 8 0.03
99 111 0.46
100 3 0.01
102 4 0.02
103 7 0.03
104 5 0.02
105 4 0.02
106 3 0.01
107 8 0.03
108 9 0.04
109 8 0.03
110 2 0.01
111 4 0.02
112 5 0.02
113 7 0.03
114 4 0.02
116 5 0.02
117 36 0.15
118 8 0.03
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.54
Consensus pattern (99 bp):
TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTT
TATTTTTTTTGAATCACGAAAAATAATTTCAATA
Found at i:65902257 original size:118 final size:117
Alignment explanation
Indices: 65902127--65902358 Score: 358
Period size: 118 Copynumber: 2.0 Consensus size: 117
65902117 TTTTGTTCTC
*
65902127 TTTTATTTTATTTTCAA-ATTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATT
1 TTTTATTTTATTTT-AACATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATT
* * * *
65902191 TTATTTTTTTTGAATCACGAAAAATAATTTTAACATTTTATTTTATTTTAAATA
65 TCATTTATTTT-AATCACAAAAAATAATTTCAACATTTTATTTTATTTTAAATA
* *
65902245 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATTT
**
65902310 CATTTATTTTAATCACAAAAAATAATTTCATTATTTTATTTTATTTTAA
66 CATTTATTTTAATCACAAAAAATAATTTCAACATTTTATTTTATTTTAA
65902359 CATTACCTAA
Statistics
Matches: 104, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
117 37 0.36
118 67 0.64
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.54
Consensus pattern (117 bp):
TTTTATTTTATTTTAACATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATTT
CATTTATTTTAATCACAAAAAATAATTTCAACATTTTATTTTATTTTAAATA
Done.