Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 197 of 284
Found at i:66158304 original size:46 final size:45
Alignment explanation
Indices: 66158200--66158341 Score: 119
Period size: 46 Copynumber: 3.1 Consensus size: 45
66158190 ACTCTATTAG
* * * * * *
66158200 AAATGACTAAGACCATGGGTGAAAGAAACCATGGCATCAT--TTC
1 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGAATC
* ** *
66158243 AGAATGTGTAAAAGACCATA-TCTGAAAGACGGTATGGCATCATGATTC
1 A-AATGAGT--AAGACCATAGT-TGAAAGACACTATGGCATCATGAATC
*
66158291 ACAATGAGTAAGACCCTAGTTGAAAGACACTATGGCATCATGAATC
1 A-AATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGAATC
66158337 AAATG
1 AAATG
66158342 TATACGAATT
Statistics
Matches: 78, Mismatches: 14, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.01
44 5 0.06
45 4 0.05
46 57 0.73
47 1 0.01
48 10 0.13
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGAATC
Found at i:66162709 original size:16 final size:16
Alignment explanation
Indices: 66162683--66162731 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
66162673 ATTACTGATA
*
66162683 ACAGCCCTATTCCATT
1 ACAGCTCTATTCCATT
*
66162699 ACAGCTTTATTCCATT
1 ACAGCTCTATTCCATT
66162715 ACAGCTCTATTCCATT
1 ACAGCTCTATTCCATT
66162731 A
1 A
66162732 GGATTTAGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.27, C:0.31, G:0.06, T:0.37
Consensus pattern (16 bp):
ACAGCTCTATTCCATT
Found at i:66164449 original size:14 final size:15
Alignment explanation
Indices: 66164430--66164458 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66164420 TTATGGAGTA
66164430 TCTTGC-TGCTCTAT
1 TCTTGCATGCTCTAT
66164444 TCTTGCATGCTCTAT
1 TCTTGCATGCTCTAT
66164459 GTGTGAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.10, C:0.28, G:0.14, T:0.48
Consensus pattern (15 bp):
TCTTGCATGCTCTAT
Found at i:66164530 original size:36 final size:35
Alignment explanation
Indices: 66164485--66164558 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 35
66164475 GACTTATATC
66164485 TTTTTTGGTTGTCAAGCTGATTTACGATCACGATT
1 TTTTTTGGTTGTCAAGCTGATTTACGATCACGATT
66164520 TTTTCTTGGTTGTCAAGCTGATTTACGATCACGATT
1 TTTT-TTGGTTGTCAAGCTGATTTACGATCACGATT
66164556 TTT
1 TTT
66164559 GGCTTTCTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 4 0.11
36 34 0.89
ACGTcount: A:0.19, C:0.15, G:0.19, T:0.47
Consensus pattern (35 bp):
TTTTTTGGTTGTCAAGCTGATTTACGATCACGATT
Found at i:66169557 original size:17 final size:17
Alignment explanation
Indices: 66169537--66169619 Score: 80
Period size: 17 Copynumber: 5.0 Consensus size: 17
66169527 CATATTTTCG
66169537 CAGCTCACACATTACTA
1 CAGCTCACACATTACTA
66169554 CAGCTCACACATTAC-A
1 CAGCTCACACATTACTA
* * * * *
66169570 CAACTCGCACATCATTG
1 CAGCTCACACATTACTA
*
66169587 TAGCTCACACATTAC-A
1 CAGCTCACACATTACTA
* *
66169603 CAACTCACACATCACTA
1 CAGCTCACACATTACTA
66169620 TGACTCGCAA
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
16 24 0.48
17 26 0.52
ACGTcount: A:0.36, C:0.36, G:0.06, T:0.22
Consensus pattern (17 bp):
CAGCTCACACATTACTA
Found at i:66169581 original size:33 final size:33
Alignment explanation
Indices: 66169540--66169619 Score: 115
Period size: 33 Copynumber: 2.4 Consensus size: 33
66169530 ATTTTCGCAG
*
66169540 CTCACACATTACTACAGCTCACACATTACACAA
1 CTCACACATCACTACAGCTCACACATTACACAA
* * **
66169573 CTCGCACATCATTGTAGCTCACACATTACACAA
1 CTCACACATCACTACAGCTCACACATTACACAA
66169606 CTCACACATCACTA
1 CTCACACATCACTA
66169620 TGACTCGCAA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.36, C:0.36, G:0.05, T:0.23
Consensus pattern (33 bp):
CTCACACATCACTACAGCTCACACATTACACAA
Found at i:66169611 original size:16 final size:16
Alignment explanation
Indices: 66169540--66169614 Score: 69
Period size: 16 Copynumber: 4.6 Consensus size: 16
66169530 ATTTTCGCAG
*
66169540 CTCACACATTACTACAG
1 CTCACACATTAC-ACAA
66169557 CTCACACATTACACAA
1 CTCACACATTACACAA
* * *** *
66169573 CTCGCACATCATTGTAG
1 CTCACACATTA-CACAA
66169590 CTCACACATTACACAA
1 CTCACACATTACACAA
66169606 CTCACACAT
1 CTCACACAT
66169615 CACTATGACT
Statistics
Matches: 44, Mismatches: 13, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
16 22 0.50
17 22 0.50
ACGTcount: A:0.36, C:0.36, G:0.05, T:0.23
Consensus pattern (16 bp):
CTCACACATTACACAA
Found at i:66178244 original size:22 final size:24
Alignment explanation
Indices: 66178202--66178245 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
66178192 TTTCACTATT
*
66178202 ATATTGTTATGTATTATTGTTTGG
1 ATATTGTTATGTAGTATTGTTTGG
66178226 ATATTG-TAT-TAGTATTGTTT
1 ATATTGTTATGTAGTATTGTTT
66178246 TATTGTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 3 0.16
24 6 0.32
ACGTcount: A:0.23, C:0.00, G:0.18, T:0.59
Consensus pattern (24 bp):
ATATTGTTATGTAGTATTGTTTGG
Found at i:66178380 original size:14 final size:13
Alignment explanation
Indices: 66178361--66178399 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
66178351 TATTTTAATG
66178361 TTTTTAATATATT
1 TTTTTAATATATT
*
66178374 TTATTTATTATATT
1 TT-TTTAATATATT
*
66178388 TTTTAAATATAT
1 TTTTTAATATAT
66178400 ATAATAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTTAATATATT
Found at i:66186374 original size:75 final size:75
Alignment explanation
Indices: 66186272--66186428 Score: 223
Period size: 75 Copynumber: 2.1 Consensus size: 75
66186262 GCTTAAGAAA
*
66186272 AAGAAGCCGATGGGTAAGGCCTTGGTACTTGGTTCGAGTGCAAGGGATGTCGAAGCCAAT-GAGG
1 AAGAAGCCGATGGGTAAGGCCTTGGTACTTGGTTCGAGCGCAAGGGATGTCGAAG-CAATGGAGG
*
66186336 CCGAAA-TCGAG
65 CCAAAAGT-GAG
*
66186347 AAGAAGCC-ACTGGGTAAGG-CTTGGGTACTTGGTTCGAGCGCAAGGGGTGTCGAAGCAATGGAG
1 AAGAAGCCGA-TGGGTAAGGCCTT-GGTACTTGGTTCGAGCGCAAGGGATGTCGAAGCAATGGAG
66186410 GCCAAAAGTGAG
64 GCCAAAAGTGAG
66186422 AAGAAGC
1 AAGAAGC
66186429 TAGTGGAGTG
Statistics
Matches: 75, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
74 8 0.11
75 66 0.88
76 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.37, T:0.17
Consensus pattern (75 bp):
AAGAAGCCGATGGGTAAGGCCTTGGTACTTGGTTCGAGCGCAAGGGATGTCGAAGCAATGGAGGC
CAAAAGTGAG
Found at i:66188898 original size:45 final size:46
Alignment explanation
Indices: 66188752--66188926 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
66188742 AATTTGAGAT
* * * * *
66188752 CCGAACTCGTTGAGTTGCGTTCCGAGTTCGTGA-GAATTATG-AGGCAT
1 CCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATG---GATGCAAGCAC
* * *
66188799 CTGAACTCGTTGAGTTGCGTTCCGAGTTCACCTATGGATGCAAGCAT
1 CCGAACTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGCAAGCAC
* * *
66188846 CCAAACTCG-TGAATTGTGTTCCGAGTTCATTATGGATGCGAA-CAC
1 CCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGC-AAGCAC
66188891 CCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGG
1 CCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGG
66188927 GTGAGATTAT
Statistics
Matches: 108, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
45 19 0.18
46 47 0.44
47 40 0.37
48 1 0.01
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCAAGCAC
Found at i:66196954 original size:17 final size:18
Alignment explanation
Indices: 66196921--66196954 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
66196911 TATCTCTTAA
66196921 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
66196939 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
66196955 AAAATAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:66197453 original size:43 final size:42
Alignment explanation
Indices: 66197391--66197527 Score: 123
Period size: 43 Copynumber: 3.2 Consensus size: 42
66197381 CCACAAACCC
* **
66197391 TAAACCAAAAACTTTAAACCCAAAATAATAAACATTATATCA
1 TAAACCATAAACCCTAAACCCAAAATAATAAACATTATATCA
* ** * * * *
66197433 TAAACCCTAAACACCTAAA-CCATGGATATTAAACCTTAAATCT
1 TAAACCATAAAC-CCTAAACCCA-AAATAATAAACATTATATCA
* *
66197476 TAAATCATAAACCTTAAACCCCAAAATAATAAACATTATATCA
1 TAAACCATAAACCCTAAA-CCCAAAATAATAAACATTATATCA
*
66197519 TAACCCATA
1 TAAACCATA
66197528 TCTCATACCC
Statistics
Matches: 70, Mismatches: 21, Indels: 7
0.71 0.21 0.07
Matches are distributed among these distances:
42 18 0.26
43 49 0.70
44 3 0.04
ACGTcount: A:0.51, C:0.23, G:0.01, T:0.25
Consensus pattern (42 bp):
TAAACCATAAACCCTAAACCCAAAATAATAAACATTATATCA
Found at i:66198087 original size:14 final size:14
Alignment explanation
Indices: 66198063--66198131 Score: 68
Period size: 14 Copynumber: 4.9 Consensus size: 14
66198053 ATCATAGATT
66198063 ATAAACCCTAAACC
1 ATAAACCCTAAACC
* * **
66198077 TTAAACTCTAAGTC
1 ATAAACCCTAAACC
* *
66198091 ATAAACTCTAAAAC
1 ATAAACCCTAAACC
66198105 ATAAACCCTAAACC
1 ATAAACCCTAAACC
66198119 AT-AACCCATAAAC
1 ATAAACCC-TAAAC
66198132 TAAATTGATT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
13 5 0.11
14 40 0.89
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.20
Consensus pattern (14 bp):
ATAAACCCTAAACC
Found at i:66198467 original size:95 final size:98
Alignment explanation
Indices: 66198228--66198470 Score: 330
Period size: 101 Copynumber: 2.5 Consensus size: 98
66198218 TCTATAGCGG
* * * *
66198228 CGTTTATCAAAAAGCGCCGTTAAAGCTCAATCTATAGCGGCGTTTTTCAAAAAGCGTCGCTAATG
1 CGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCATCGCTAATG
*
66198293 CCACTAATGCTGCCGTCTTGCTGAATATTTTTGCGA
66 CCACTAAAGCT-CCG--TTGCTGAATATTTTTGCGA
* *
66198329 CGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAGAAAGCATCGCTAATG
1 CGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCATCGCTAATG
* *
66198394 CCACTAAAGCT-CG-TGCTTAAT-TTTTTTCGA
66 CCACTAAAGCTCCGTTGCTGAATATTTTTGCGA
* * *
66198424 TGTTTTTCAAAAAGCGCCGCTAATTCTCAATCTATAGCAGCGTTTTT
1 CGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTT
66198471 GGTCCTAGCG
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
95 51 0.40
96 7 0.05
99 2 0.02
101 69 0.53
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (98 bp):
CGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCATCGCTAATG
CCACTAAAGCTCCGTTGCTGAATATTTTTGCGA
Found at i:66212385 original size:6 final size:6
Alignment explanation
Indices: 66212368--66212420 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
66212358 ACTGGGTCCA
* * *
66212368 TTTATT TATATT TTTATTTT TTTATT TTTATG TTTATT TTTCTT TTATATT
1 TTTATT TTTATT TTTA--TT TTTATT TTTATT TTTATT TTTATT TT-TATT
66212419 TT
1 TT
66212421 GAACTATATG
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
6 27 0.71
7 5 0.13
8 6 0.16
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:66216333 original size:48 final size:48
Alignment explanation
Indices: 66216230--66216504 Score: 267
Period size: 48 Copynumber: 5.7 Consensus size: 48
66216220 ACATAATAAG
* * * * *
66216230 ATGCCAATGCCATATCCCAGATATGGTCTTACA-TGGGATCAT-ATATCG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACT-GGCTC-TCATATCA
* * * * * *
66216278 ATACCGATGCCATATCCCAGATATGGTCTTACACTAGCTCTCGTCTCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA
*
66216326 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCT--TAT-A
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA
* * *
66216371 ATGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
1 A--T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA
*
66216422 ATGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATA--A
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA
* * *
66216468 TGTGGTCGATGCCATGTCCCAAACATGGTCTTACACT
1 -AT-GCCGATGCCATGTCCCAGACATGGTCTTACACT
66216505 AGCACACATA
Statistics
Matches: 192, Mismatches: 25, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
45 2 0.01
46 3 0.02
47 3 0.02
48 177 0.92
49 2 0.01
50 3 0.02
51 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA
Found at i:66216381 original size:96 final size:96
Alignment explanation
Indices: 66216230--66216515 Score: 371
Period size: 96 Copynumber: 3.0 Consensus size: 96
66216220 ACATAATAAG
* * * ** * *
66216230 ATGCCAATGCCATATCCCAGATATGGTCTTACA-TGG-GATCATATATCGAT-ACCGATGCCATA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-G-TGGCCGATGCCATG
* * * * *
66216292 TCCCAGATATGGTCTTACACTAGCTCTCGTCTCA
63 TCCCAGACATGGTCTTACACTAGCACACATATCA
* *
66216326 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTTATAATGTGGCCGATGCCATGTCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCC
66216391 CAGACATGGTCTTACACTAGCACACATATCA
66 CAGACATGGTCTTACACTAGCACACATATCA
* *
66216422 ATGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAATGTGGTCGATGCCATGTCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCC
*
66216487 CAAACATGGTCTTACACTAGCACACATAT
66 CAGACATGGTCTTACACTAGCACACATAT
66216516 ATTGCCATGG
Statistics
Matches: 168, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 158 0.94
97 5 0.03
98 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (96 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCC
CAGACATGGTCTTACACTAGCACACATATCA
Found at i:66216496 original size:144 final size:143
Alignment explanation
Indices: 66216236--66216504 Score: 337
Period size: 144 Copynumber: 1.9 Consensus size: 143
66216226 TAAGATGCCA
* * * * * *
66216236 ATGCCATATCCCAGATATGGTCTTACATGGGATCATATATCGATACCGATGCCATATCCCAGATA
1 ATGCCATATCCCAGACATGGTCTTACATAGCATCACATATCAATACCGATGCCATATCCCAGACA
* * *
66216301 TGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTC
66 TGGTCTTACACTAGCTCTCG-ATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
66216366 TTATAATGTGGCCG
130 TTATAATGTGGCCG
* * *
66216380 ATGCCATGTCCCAGACATGGTCTTACACTAGCA-CACATATCAATGCCGATGCCATGTCCCAGAC
1 ATGCCATATCCCAGACATGGTCTTACA-TAGCATCACATATCAATACCGATGCCATATCCCAGAC
* * *
66216444 ATGGTCTTATACTGGCTCTC-AT-AATGTGGTCGATGCCATGTCCCAAACATGGTCTTACACT
65 ATGGTCTTACACTAGCTCTCGATCAA--T-GCCGATGCCATGTCCCAAACATGGTCTTACACT
66216505 AGCACACATA
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
141 2 0.02
142 1 0.01
143 1 0.01
144 99 0.93
145 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (143 bp):
ATGCCATATCCCAGACATGGTCTTACATAGCATCACATATCAATACCGATGCCATATCCCAGACA
TGGTCTTACACTAGCTCTCGATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT
TATAATGTGGCCG
Found at i:66232524 original size:18 final size:17
Alignment explanation
Indices: 66232501--66232551 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
66232491 TATATAAATT
*
66232501 TAAAATACAAAAAATGAA
1 TAAAATACAAAAAA-AAA
*
66232519 TAAAATAGTAAAAAAAAA
1 TAAAATA-CAAAAAAAAA
66232537 TAAAATACAAAAAAA
1 TAAAATACAAAAAAA
66232552 GAAGACTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 7 0.24
18 16 0.55
19 6 0.21
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (17 bp):
TAAAATACAAAAAAAAA
Found at i:66236162 original size:21 final size:20
Alignment explanation
Indices: 66236137--66236183 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
66236127 TTAATAAAAT
66236137 ATAAAAATGTAATTTTATTTA
1 ATAAAAAT-TAATTTTATTTA
* * *
66236158 TTAAAGATTATTTTTATTTA
1 ATAAAAATTAATTTTATTTA
66236178 ATAAAA
1 ATAAAA
66236184 CATACAATGT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (20 bp):
ATAAAAATTAATTTTATTTA
Found at i:66236406 original size:35 final size:34
Alignment explanation
Indices: 66236367--66236440 Score: 105
Period size: 33 Copynumber: 2.2 Consensus size: 34
66236357 ATTTAGCATT
*
66236367 AACCCCACTTTGCTAATACTAGGATGCCTAACATC
1 AACCCC-CTATGCTAATACTAGGATGCCTAACATC
* *
66236402 AA-CCCCTATGCTAGTATTAGGATGCCTAACATC
1 AACCCCCTATGCTAATACTAGGATGCCTAACATC
66236435 AACCCC
1 AACCCC
66236441 TTTCCATTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
33 27 0.77
34 6 0.17
35 2 0.06
ACGTcount: A:0.31, C:0.32, G:0.12, T:0.24
Consensus pattern (34 bp):
AACCCCCTATGCTAATACTAGGATGCCTAACATC
Found at i:66236423 original size:33 final size:33
Alignment explanation
Indices: 66236377--66236441 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
66236367 AACCCCACTT
66236377 TGCTAATACTAGGATGCCTAACATCAACCCCTA
1 TGCTAATACTAGGATGCCTAACATCAACCCCTA
* *
66236410 TGCTAGTATTAGGATGCCTAACATCAACCCCT
1 TGCTAATACTAGGATGCCTAACATCAACCCCT
66236442 TTCCATTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (33 bp):
TGCTAATACTAGGATGCCTAACATCAACCCCTA
Found at i:66237127 original size:22 final size:21
Alignment explanation
Indices: 66237102--66237150 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
66237092 AAACACAAGA
*
66237102 AGCTACAAATTCCTAACTAAAC
1 AGCTAC-AATTCCTAACAAAAC
* *
66237124 AGCTACTATTCCTAAGAAAAC
1 AGCTACAATTCCTAACAAAAC
66237145 AGCTAC
1 AGCTAC
66237151 TAAGTAGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.43, C:0.27, G:0.08, T:0.22
Consensus pattern (21 bp):
AGCTACAATTCCTAACAAAAC
Found at i:66237136 original size:21 final size:21
Alignment explanation
Indices: 66237110--66237152 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
66237100 GAAGCTACAA
*
66237110 ATTCCTAACTAAACAGCTACT
1 ATTCCTAACAAAACAGCTACT
*
66237131 ATTCCTAAGAAAACAGCTACT
1 ATTCCTAACAAAACAGCTACT
66237152 A
1 A
66237153 AGTAGACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.42, C:0.26, G:0.07, T:0.26
Consensus pattern (21 bp):
ATTCCTAACAAAACAGCTACT
Found at i:66238011 original size:152 final size:152
Alignment explanation
Indices: 66237735--66238038 Score: 563
Period size: 152 Copynumber: 2.0 Consensus size: 152
66237725 CAAGCAACCC
66237735 TATGTCAGAATGAACCAAATGAACATTTTATTCTCAACCCCAAAAGTTCCCAATACTATTTAATT
1 TATGTCAGAATGAACCAAATGAACATTTTATTCTCAACCCCAAAAGTTCCCAATACTATTTAATT
* *
66237800 GATATCTAATTAAGCAAGTCTTGCCATTCCAAATTAATCTAAATTGATGGTGCTGAGTCTCACTG
66 GATATCTAATTAAGCAAGTCTTCCCATTCCAAATTAATCTAAATTGATGGCGCTGAGTCTCACTG
* *
66237865 CATTTTACGGTGTAGGTATTGA
131 CATTTTACAGTGTAGGCATTGA
*
66237887 TATGTCAGAATGAACCAAATGAGCATTTTATTCTCAACCCCAAAAGTTCCCAATACTATTTAATT
1 TATGTCAGAATGAACCAAATGAACATTTTATTCTCAACCCCAAAAGTTCCCAATACTATTTAATT
66237952 GATATCTAATTAAGCAAGTCTTCCCATTCCAAATTAATCTAAATTGATGGCGCTGAGTCTCACTG
66 GATATCTAATTAAGCAAGTCTTCCCATTCCAAATTAATCTAAATTGATGGCGCTGAGTCTCACTG
66238017 CATTTTACAGTGTAGGCATTGA
131 CATTTTACAGTGTAGGCATTGA
66238039 CCACCCCCCA
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
152 147 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (152 bp):
TATGTCAGAATGAACCAAATGAACATTTTATTCTCAACCCCAAAAGTTCCCAATACTATTTAATT
GATATCTAATTAAGCAAGTCTTCCCATTCCAAATTAATCTAAATTGATGGCGCTGAGTCTCACTG
CATTTTACAGTGTAGGCATTGA
Found at i:66256268 original size:6 final size:6
Alignment explanation
Indices: 66256257--66256281 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
66256247 GGAAGAGAGC
66256257 GAAATA GAAATA GAAATA GAAATA G
1 GAAATA GAAATA GAAATA GAAATA G
66256282 GAAGATAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.20, T:0.16
Consensus pattern (6 bp):
GAAATA
Found at i:66258038 original size:17 final size:16
Alignment explanation
Indices: 66258013--66258055 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
66258003 AAAAAGAAAA
*
66258013 AAAAGTGAAATGAAATT
1 AAAA-TGAAATCAAATT
66258030 AAAATTGAAATCAAATT
1 AAAA-TGAAATCAAATT
*
66258047 CAAATGAAA
1 AAAATGAAA
66258056 AAAATTCGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 5 0.22
17 18 0.78
ACGTcount: A:0.60, C:0.05, G:0.12, T:0.23
Consensus pattern (16 bp):
AAAATGAAATCAAATT
Found at i:66259486 original size:15 final size:15
Alignment explanation
Indices: 66259466--66259495 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
66259456 GGTTCGCTGT
66259466 ATTGGATTAGAGGTG
1 ATTGGATTAGAGGTG
66259481 ATTGGATTAGAGGTG
1 ATTGGATTAGAGGTG
66259496 TAATAGCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.40, T:0.33
Consensus pattern (15 bp):
ATTGGATTAGAGGTG
Found at i:66259562 original size:44 final size:45
Alignment explanation
Indices: 66259483--66259568 Score: 120
Period size: 44 Copynumber: 1.9 Consensus size: 45
66259473 TAGAGGTGAT
* *
66259483 TGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAATGTAA
1 TGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAATGTAA
***
66259528 TGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAATG
1 TGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAATG
66259569 GAATAGAGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 19 0.53
45 17 0.47
ACGTcount: A:0.28, C:0.07, G:0.29, T:0.36
Consensus pattern (45 bp):
TGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAATGTAA
Found at i:66259754 original size:18 final size:19
Alignment explanation
Indices: 66259733--66259769 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
66259723 TTATTATTAA
66259733 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
66259751 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
66259770 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:66259877 original size:59 final size:58
Alignment explanation
Indices: 66259811--66259996 Score: 157
Period size: 59 Copynumber: 3.1 Consensus size: 58
66259801 CTCAAATCAT
* *
66259811 AATATATGATACTATAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTT-AAATAATTATTATTAAATATATTTTAATAAA
* * * * *
66259870 AATATATGAT-TTAATAAAATTCTTAATATTAAAT-ATTCTTATATGAAT-T-TTCTAA-AATCA
1 AATATATGATACT-ATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATATTTTAATAA--A
* **
66259930 TAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAAGTTAATAAA
1 -AATATATGATACTATAAAATATAATTTAA-ATAATTATTATTAAATATATTTTAATAAA
66259990 AATATAT
1 AATATAT
66259997 AATTTATCAT
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 6 0.06
59 38 0.39
60 19 0.19
61 30 0.31
62 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (58 bp):
AATATATGATACTATAAAATATAATTTAAATAATTATTATTAAATATATTTTAATAAA
Found at i:66259934 original size:120 final size:120
Alignment explanation
Indices: 66259713--66260002 Score: 456
Period size: 120 Copynumber: 2.4 Consensus size: 120
66259703 TTAATCATAT
66259713 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
66259778 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
66259835 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
66259899 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
66259955 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
66260003 TCATCATACT
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
119 2 0.01
120 109 0.71
121 2 0.01
122 39 0.25
123 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:66263963 original size:21 final size:20
Alignment explanation
Indices: 66263939--66264002 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
66263929 TAAAATCAAT
66263939 AAATATAAAGAAAAAAACTAA
1 AAATA-AAAGAAAAAAACTAA
* **
66263960 AAATAAAATAATCCAAACTAA
1 AAATAAAAGAA-AAAAACTAA
*
66263981 AAA-AAAAGAAAAGAAAGTAA
1 AAATAAAAGAAAA-AAACTAA
66264001 AA
1 AA
66264003 CTCATAAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
20 19 0.56
21 15 0.44
ACGTcount: A:0.75, C:0.06, G:0.06, T:0.12
Consensus pattern (20 bp):
AAATAAAAGAAAAAAACTAA
Found at i:66269789 original size:22 final size:22
Alignment explanation
Indices: 66269742--66269791 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
66269732 CAATAACAAC
* *
66269742 AAAATAGTAGCAATATAATAGT
1 AAAATAGTAGCAAAATAAGAGT
*
66269764 AAAATGGTAGCAAAATAAGGAG-
1 AAAATAGTAGCAAAATAA-GAGT
66269786 AAAATA
1 AAAATA
66269792 ACAAGAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.58, C:0.04, G:0.18, T:0.20
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAAGAGT
Found at i:66270497 original size:20 final size:20
Alignment explanation
Indices: 66270474--66270511 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
66270464 CTAAAACTAT
*
66270474 AAAAAAAAGA-TAAAATTTC
1 AAAAAAAAAATTAAAATTTC
66270493 AAAAAAAAAATTAAAATTT
1 AAAAAAAAAATTAAAATTT
66270512 TGAAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (20 bp):
AAAAAAAAAATTAAAATTTC
Found at i:66270517 original size:20 final size:20
Alignment explanation
Indices: 66270474--66270511 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
66270464 CTAAAACTAT
66270474 AAAAAAAAGATAAAATTTCA
1 AAAAAAAAGATAAAATTTCA
66270494 AAAAAAAA-ATTAAAATTT
1 AAAAAAAAGA-TAAAATTT
66270512 TGAAAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (20 bp):
AAAAAAAAGATAAAATTTCA
Found at i:66276252 original size:87 final size:88
Alignment explanation
Indices: 66276106--66276280 Score: 298
Period size: 87 Copynumber: 2.0 Consensus size: 88
66276096 ATCTATATAC
* *
66276106 ATTCTGTGACAAAAAGCATATAAATATAATGTTTATCGTCACATTATGTTAAATTCTTGGA-GTT
1 ATTCTGTGACAAAAAGCATATAAATATAATGTTCATCGTCACATTATATTAAATTCTTGGAGGTT
*
66276170 TTTTTACAGTTGTTGGAACATTT
66 TTTTTACAGTTATTGGAACATTT
*
66276193 ATTCTGTGACAAAAAGCATATAAATGTAATGTTCATCGTCACATTATATTAAATTCTTGGAGGTT
1 ATTCTGTGACAAAAAGCATATAAATATAATGTTCATCGTCACATTATATTAAATTCTTGGAGGTT
*
66276258 TTTTTACATTTATTGGAACATTT
66 TTTTTACAGTTATTGGAACATTT
66276281 GATTGCTCCG
Statistics
Matches: 82, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
87 58 0.71
88 24 0.29
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (88 bp):
ATTCTGTGACAAAAAGCATATAAATATAATGTTCATCGTCACATTATATTAAATTCTTGGAGGTT
TTTTTACAGTTATTGGAACATTT
Found at i:66289774 original size:36 final size:36
Alignment explanation
Indices: 66289727--66289800 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
66289717 ATGCAATCGT
66289727 TAGCAAAAAATAGGTGATTAATTGGGAACCTTTCCC
1 TAGCAAAAAATAGGTGATTAATTGGGAACCTTTCCC
66289763 TAGCAAAAAATAGGTGATTAATTGGGAACCTTTCCC
1 TAGCAAAAAATAGGTGATTAATTGGGAACCTTTCCC
66289799 TA
1 TA
66289801 CCAATTGGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.28
Consensus pattern (36 bp):
TAGCAAAAAATAGGTGATTAATTGGGAACCTTTCCC
Found at i:66293869 original size:22 final size:23
Alignment explanation
Indices: 66293843--66293888 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
66293833 CAACCAAACC
66293843 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
66293865 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
66293888 A
1 A
66293889 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:66293894 original size:23 final size:23
Alignment explanation
Indices: 66293850--66293894 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
66293840 ACCAATTCAA
*
66293850 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
66293873 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
66293895 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:66298275 original size:42 final size:44
Alignment explanation
Indices: 66298163--66298299 Score: 108
Period size: 43 Copynumber: 3.2 Consensus size: 44
66298153 TGAGACATCA
* * * *
66298163 TGTAAGACC-GTGTCTGGGGCACAGGCCTCG--ATTGAGATTTACG
1 TGTAAGACCTATGTCTGGGACAGAGGCATCGATATTG-GATTT-CG
* **
66298206 TATAAGA-CTATGTCTGGGACATCGGCATCG-TATCT-GATTTCG
1 TGTAAGACCTATGTCTGGGACAGAGGCATCGATAT-TGGATTTCG
* * *
66298248 TGTAAGACCT-TGTCTGTGACAGAGGCATCGATATTGGATTACA
1 TGTAAGACCTATGTCTGGGACAGAGGCATCGATATTGGATTTCG
66298291 TGTAAGACC
1 TGTAAGACC
66298300 ACTTCTGGGA
Statistics
Matches: 76, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
42 27 0.36
43 46 0.61
44 2 0.03
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (44 bp):
TGTAAGACCTATGTCTGGGACAGAGGCATCGATATTGGATTTCG
Found at i:66309678 original size:30 final size:30
Alignment explanation
Indices: 66309644--66309701 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
66309634 TAGGTAGTTC
* *
66309644 CACACGGGTAATCCACACGCCCGTGTGTGA
1 CACACGGGTAAGCCACACGACCGTGTGTGA
* *
66309674 CACACGGGTAGGCCACACGATCGTGTGT
1 CACACGGGTAAGCCACACGACCGTGTGT
66309702 AATTACCGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.17
Consensus pattern (30 bp):
CACACGGGTAAGCCACACGACCGTGTGTGA
Found at i:66310779 original size:78 final size:78
Alignment explanation
Indices: 66310687--66310840 Score: 281
Period size: 78 Copynumber: 2.0 Consensus size: 78
66310677 ACGATATTTT
*
66310687 CGGTCTCACCTTAACTATACTACTGTTCGATAGGTGCGCTTGCCTTAGTCGAATTTTTAGTTAGT
1 CGGTCTCACCTTAACTATACTACTGTTCGATAGGTGCACTTGCCTTAGTCGAATTTTTAGTTAGT
66310752 TTAGCGACCATTC
66 TTAGCGACCATTC
* *
66310765 CGGTCTCACCTTAACTATACTACTGTTCGATTGGTGCACTTGCCTTAGTCGAATTTTTTGTTAGT
1 CGGTCTCACCTTAACTATACTACTGTTCGATAGGTGCACTTGCCTTAGTCGAATTTTTAGTTAGT
66310830 TTAGCGACCAT
66 TTAGCGACCAT
66310841 CAAGTTTTTG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (78 bp):
CGGTCTCACCTTAACTATACTACTGTTCGATAGGTGCACTTGCCTTAGTCGAATTTTTAGTTAGT
TTAGCGACCATTC
Found at i:66312561 original size:55 final size:55
Alignment explanation
Indices: 66312435--66312577 Score: 155
Period size: 55 Copynumber: 2.6 Consensus size: 55
66312425 TGCAAGCCCC
* *
66312435 ACGCCCGTGTTAATTTAACAGGTTCGACCACGAGTGTTCCACACGGGCGTGTAGA
1 ACGCCCGTGTTATTTTAACAGGTTCGACCACGAGTCTTCCACACGGGCGTGTAGA
* * * * *
66312490 ACGCCCGTGCTATTTTAACAGGTTCG-CTCATG-GTTCTTCCAGACGGGCGTGTCGT
1 ACGCCCGTGTTATTTTAACAGGTTCGAC-CACGAG-TCTTCCACACGGGCGTGTAGA
* * * *
66312545 ACGCCCGTGTTGTTTTAGCAGGCTCAACCACGA
1 ACGCCCGTGTTATTTTAACAGGTTCGACCACGA
66312578 CCATATCGCA
Statistics
Matches: 71, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
54 2 0.03
55 68 0.96
56 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (55 bp):
ACGCCCGTGTTATTTTAACAGGTTCGACCACGAGTCTTCCACACGGGCGTGTAGA
Found at i:66312888 original size:42 final size:42
Alignment explanation
Indices: 66312823--66312906 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
66312813 TCTCCAGTGA
* ** * *
66312823 ATGGTCATGGTGGTTTGAGGAGTTTATACTTCTCATTCCTGC
1 ATGGTCAGGGTGGTACGAAGAGTTTATACTCCTCATTCCTGC
66312865 ATGGTCAGGGTGGTACGAAGAGTTTATACTCCTCATTCCTGC
1 ATGGTCAGGGTGGTACGAAGAGTTTATACTCCTCATTCCTGC
66312907 TATCAATCTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (42 bp):
ATGGTCAGGGTGGTACGAAGAGTTTATACTCCTCATTCCTGC
Found at i:66323031 original size:6 final size:6
Alignment explanation
Indices: 66323022--66323047 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
66323012 TATCGTAAGG
66323022 GTAACA GTAACA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GT
66323048 CAGGTACAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:66323987 original size:13 final size:13
Alignment explanation
Indices: 66323969--66324006 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
66323959 TTACCTTAAT
66323969 TTATATTATTATA
1 TTATATTATTATA
*
66323982 TTATATTTTTA-A
1 TTATATTATTATA
66323994 TTATAATTATTAT
1 TTAT-ATTATTAT
66324007 TTCTTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 5 0.24
13 16 0.76
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATATTATTATA
Found at i:66330280 original size:43 final size:43
Alignment explanation
Indices: 66330161--66330467 Score: 195
Period size: 43 Copynumber: 7.2 Consensus size: 43
66330151 GAATTTTTTT
* * * *
66330161 TAAAGGTCATGT-TCTTTAGCGGCGTTTGTGGAAAAAGCGTCGT
1 TAAAGGTCATGTCT-TTTAGCGGCATTTGTGAAAAAAGCGCCGC
* *
66330204 TAAAGGTC-TGT-TTTATAGTGGCATTT-TCGAAAAAAGCGTCGC
1 TAAAGGTCATGTCTTT-TAGCGGCATTTGT-GAAAAAAGCGCCGC
* * *
66330246 TAAAGGTCATGTCTTTTAGTGGCATTTGTGAAAAAAACACCGC
1 TAAAGGTCATGTCTTTTAGCGGCATTTGTGAAAAAAGCGCCGC
* ** * *
66330289 TAAAGGTCAT-TTTTTTAAAGGCATTTGCT-AGAAAAGCG-CAC
1 TAAAGGTCATGTCTTTTAGCGGCATTTG-TGAAAAAAGCGCCGC
* * * *
66330330 TAAAGGTCTAT-TC-TATAGCCGTATTT-TCGAAAAAAGAGCCGC
1 TAAAGGTC-ATGTCTTTTAGCGGCATTTGT-GAAAAAAGCGCCGC
* * * * * **
66330372 TAAATGTCATGTTTTTTAGTGGCGTTTGTGAGAAAAGCGCCAT
1 TAAAGGTCATGTCTTTTAGCGGCATTTGTGAAAAAAGCGCCGC
* ** ** *
66330415 TAATGGTCATGGTC-TTTAGCGGTGTTTGTGGGAAAAGCGCAGC
1 TAAAGGTCAT-GTCTTTTAGCGGCATTTGTGAAAAAAGCGCCGC
66330458 TAAAGGTCAT
1 TAAAGGTCAT
66330468 ATTCTTTAGC
Statistics
Matches: 206, Mismatches: 44, Indels: 28
0.74 0.16 0.10
Matches are distributed among these distances:
39 1 0.00
41 30 0.15
42 66 0.32
43 102 0.50
44 7 0.03
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
TAAAGGTCATGTCTTTTAGCGGCATTTGTGAAAAAAGCGCCGC
Found at i:66330312 original size:85 final size:84
Alignment explanation
Indices: 66330161--66330436 Score: 193
Period size: 85 Copynumber: 3.3 Consensus size: 84
66330151 GAATTTTTTT
* * * ** * **
66330161 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGAAAAAGCGTCGTTAAAGGTCTGTTTTATAGTGGC
1 TAAAGGTCATGTTCTTTAGCGGCATTTGTGAAAAAAACACCGCTAAAGGTCTGTTTTATAAAGGC
* *
66330226 ATTTTCGAAAAAAGCGTCGC
66 ATTTGCGAAAAAAGCG-CAC
* *
66330246 TAAAGGTCATG-TCTTTTAGTGGCATTTGTGAAAAAAACACCGCTAAAGGTCAT-TTTTTTAAAG
1 TAAAGGTCATGTTC-TTTAGCGGCATTTGTGAAAAAAACACCGCTAAAGGTC-TGTTTTATAAAG
* *
66330309 GCATTTGCTAGAAAAGCGCAC
64 GCATTTGCGAAAAAAGCGCAC
* * * * * * * **
66330330 TAAAGGTC-TATTCTATAGCCGTATTT-TCGAAAAAAGA-GCCGCTAAATGTCATGTTTTTTAGT
1 TAAAGGTCATGTTCTTTAGCGGCATTTGT-GAAAAAA-ACACCGCTAAAGGTC-TGTTTTATAAA
* * * *
66330392 GGCGTTTGTGAGAAAAGCGCCAT
63 GGCATTTGCGAAAAAAGCG-CAC
* *
66330415 TAATGGTCATGGTCTTTAGCGG
1 TAAAGGTCATGTTCTTTAGCGG
66330437 TGTTTGTGGG
Statistics
Matches: 151, Mismatches: 32, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
82 1 0.01
83 30 0.20
84 38 0.25
85 72 0.48
86 10 0.07
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (84 bp):
TAAAGGTCATGTTCTTTAGCGGCATTTGTGAAAAAAACACCGCTAAAGGTCTGTTTTATAAAGGC
ATTTGCGAAAAAAGCGCAC
Found at i:66331907 original size:28 final size:28
Alignment explanation
Indices: 66331864--66331920 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
66331854 GAATTCTACT
66331864 TATAAGATAGTCCTAACGGACTTCCACA
1 TATAAGATAGTCCTAACGGACTTCCACA
* *
66331892 TATAAGATAGTTCTAACGGGCTTCCACA
1 TATAAGATAGTCCTAACGGACTTCCACA
66331920 T
1 T
66331921 CTTTCATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (28 bp):
TATAAGATAGTCCTAACGGACTTCCACA
Found at i:66333487 original size:15 final size:15
Alignment explanation
Indices: 66333467--66333499 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
66333457 TTATATTTTC
66333467 ATTGTAATTTAAACT
1 ATTGTAATTTAAACT
66333482 ATTGTAATTTAAACT
1 ATTGTAATTTAAACT
66333497 ATT
1 ATT
66333500 TGTACTCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (15 bp):
ATTGTAATTTAAACT
Found at i:66335048 original size:9 final size:8
Alignment explanation
Indices: 66335031--66335082 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 8
66335021 AAAATCGGGT
66335031 GAAAAGAA
1 GAAAAGAA
66335039 GAAGAAGAA
1 GAA-AAGAA
66335048 GAAAAGGAA
1 GAAAA-GAA
66335057 -AAAAGAA
1 GAAAAGAA
66335064 GAAAA-AA
1 GAAAAGAA
*
66335071 GGAAA-AA
1 GAAAAGAA
66335078 GAAAA
1 GAAAA
66335083 CAAAGAAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
7 15 0.38
8 13 0.33
9 11 0.28
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (8 bp):
GAAAAGAA
Found at i:66335065 original size:25 final size:24
Alignment explanation
Indices: 66335032--66335090 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
66335022 AAATCGGGTG
*
66335032 AAAAGAAGAAGAAGAA-GAAAAGGAA
1 AAAAGAAGAA-AA-AAGGAAAAAGAA
66335057 AAAAGAAGAAAAAAGGAAAAAGAA
1 AAAAGAAGAAAAAAGGAAAAAGAA
*
66335081 AACA-AAGAAA
1 AAAAGAAGAAA
66335091 TAAATAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 8 0.26
24 13 0.42
25 10 0.32
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (24 bp):
AAAAGAAGAAAAAAGGAAAAAGAA
Found at i:66335072 original size:18 final size:19
Alignment explanation
Indices: 66335040--66335077 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
66335030 TGAAAAGAAG
66335040 AAGAAGAAGAAAAGGAAAA
1 AAGAAGAAGAAAAGGAAAA
66335059 AAGAAGAA-AAAAGGAAAA
1 AAGAAGAAGAAAAGGAAAA
66335077 A
1 A
66335078 GAAAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGAAGAAGAAAAGGAAAA
Found at i:66335076 original size:16 final size:18
Alignment explanation
Indices: 66335031--66335080 Score: 68
Period size: 17 Copynumber: 2.8 Consensus size: 18
66335021 AAAATCGGGT
*
66335031 GAAAA-GAAGAAGAAGAA
1 GAAAAGGAAAAAGAAGAA
66335048 GAAAAGGAAAAAAGAAGAA
1 GAAAAGG-AAAAAGAAGAA
66335067 -AAAAGGAAAAAGAA
1 GAAAAGGAAAAAGAA
66335081 AACAAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 13 0.43
18 7 0.23
19 10 0.33
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (18 bp):
GAAAAGGAAAAAGAAGAA
Found at i:66341006 original size:17 final size:17
Alignment explanation
Indices: 66340981--66341013 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
66340971 TAAAATTAGC
66340981 AAATAAAAATAGATCTT
1 AAATAAAAATAGATCTT
*
66340998 AAATTAAAATAGATCT
1 AAATAAAAATAGATCT
66341014 AGCTAGCAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (17 bp):
AAATAAAAATAGATCTT
Found at i:66356159 original size:18 final size:17
Alignment explanation
Indices: 66356136--66356247 Score: 89
Period size: 18 Copynumber: 6.2 Consensus size: 17
66356126 CAAATAAAAG
*
66356136 TACTGAATGACTGACTGT
1 TACTGAATAACTGA-TGT
*
66356154 TACTGAATAATTGATCGT
1 TACTGAATAACTGAT-GT
*
66356172 TACTGAATAACTGATTGC
1 TACTGAATAACTGA-TGT
** *
66356190 TACTGAGCAAATGATTGT
1 TACTGAATAACTGA-TGT
* *
66356208 TACTGAATAACTAATTGC
1 TACTGAATAACTGA-TGT
*
66356226 TACTGAATAATTGAATGT
1 TACTGAATAACTG-ATGT
66356244 TACT
1 TACT
66356248 AAATGAAACT
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
17 1 0.01
18 72 0.96
19 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (17 bp):
TACTGAATAACTGATGT
Found at i:66356176 original size:36 final size:35
Alignment explanation
Indices: 66356136--66356247 Score: 134
Period size: 36 Copynumber: 3.1 Consensus size: 35
66356126 CAAATAAAAG
* * *
66356136 TACTGAATGACTGACTGTTACTGAATAATTGATCGT
1 TACTGAATAACTGATTGCTACTGAATAATTGAT-GT
** *
66356172 TACTGAATAACTGATTGCTACTGAGCAAATGATTGT
1 TACTGAATAACTGATTGCTACTGAATAATTGA-TGT
*
66356208 TACTGAATAACTAATTGCTACTGAATAATTGAATGT
1 TACTGAATAACTGATTGCTACTGAATAATTG-ATGT
66356244 TACT
1 TACT
66356248 AAATGAAACT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
36 62 0.97
37 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (35 bp):
TACTGAATAACTGATTGCTACTGAATAATTGATGT
Found at i:66361228 original size:23 final size:25
Alignment explanation
Indices: 66361174--66361229 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
66361164 AGTTTGAGAG
*
66361174 GAAAAAGTGTATGTGAGTTATAAAA
1 GAAAAAGTGTATGTGAGTTACAAAA
* *
66361199 GAAAAAATGTGTGTGAGTTACAAAA
1 GAAAAAGTGTATGTGAGTTACAAAA
66361224 GAAAAA
1 GAAAAA
66361230 CTAGTAGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.52, C:0.02, G:0.23, T:0.23
Consensus pattern (25 bp):
GAAAAAGTGTATGTGAGTTACAAAA
Found at i:66361492 original size:47 final size:47
Alignment explanation
Indices: 66361439--66361534 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
66361429 AATTTTAAAA
*
66361439 TTAATTTTTTAAATTATCTTATTTGATGAAATAAAGTTGCCTCTCTT
1 TTAATTTTTTAAATGATCTTATTTGATGAAATAAAGTTGCCTCTCTT
66361486 TTAATTTTTTAAATGATCTTATTTGATGAAATAAAGTTGCCTCTCTT
1 TTAATTTTTTAAATGATCTTATTTGATGAAATAAAGTTGCCTCTCTT
66361533 TT
1 TT
66361535 TTTTCTCGTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.29, C:0.10, G:0.09, T:0.51
Consensus pattern (47 bp):
TTAATTTTTTAAATGATCTTATTTGATGAAATAAAGTTGCCTCTCTT
Found at i:66362797 original size:24 final size:24
Alignment explanation
Indices: 66362760--66362807 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
66362750 ACAATTCAAC
* *
66362760 TTACTTAGGGTTGAGGTAAGTTAT
1 TTACTTAAGATTGAGGTAAGTTAT
66362784 TTACTTAAGATTGAGGTAAGTTAT
1 TTACTTAAGATTGAGGTAAGTTAT
66362808 ACTATGAACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.29, C:0.04, G:0.25, T:0.42
Consensus pattern (24 bp):
TTACTTAAGATTGAGGTAAGTTAT
Found at i:66366149 original size:29 final size:28
Alignment explanation
Indices: 66366113--66366167 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
66366103 CATGATTTAA
*
66366113 ATTATGTTTT-AGTCACTGAACTTTATTTT
1 ATTATGTTTTGA-TCAATG-ACTTTATTTT
66366142 ATTATGTTTTGATCAATGACTTTATT
1 ATTATGTTTTGATCAATGACTTTATT
66366168 GATTTGTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 8 0.33
29 15 0.62
30 1 0.04
ACGTcount: A:0.25, C:0.09, G:0.11, T:0.55
Consensus pattern (28 bp):
ATTATGTTTTGATCAATGACTTTATTTT
Found at i:66367464 original size:43 final size:43
Alignment explanation
Indices: 66367417--66367503 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
66367407 TCAACCACAT
* *
66367417 ATCAAATTTAAAGATCAACAAAAGATTGATGCACAAGTAAAGC
1 ATCAAATTTAAACATCAACAAAAGATCGATGCACAAGTAAAGC
66367460 ATCAAATTTAAACATCAACAAAAGATCGATGCACAAGTAAAGC
1 ATCAAATTTAAACATCAACAAAAGATCGATGCACAAGTAAAGC
66367503 A
1 A
66367504 CGAAGTTACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.52, C:0.16, G:0.13, T:0.20
Consensus pattern (43 bp):
ATCAAATTTAAACATCAACAAAAGATCGATGCACAAGTAAAGC
Found at i:66370355 original size:20 final size:20
Alignment explanation
Indices: 66370319--66370361 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
66370309 GGCCTTTTAC
*
66370319 AAAAATAAACCATTACAACT
1 AAAAATAAACCATTACAAAT
*
66370339 AAAATTAAACCCA-TACAAAT
1 AAAAATAAA-CCATTACAAAT
66370359 AAA
1 AAA
66370362 CCCAAGACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (20 bp):
AAAAATAAACCATTACAAAT
Found at i:66370604 original size:175 final size:175
Alignment explanation
Indices: 66370308--66370657 Score: 655
Period size: 175 Copynumber: 2.0 Consensus size: 175
66370298 AAATTAGCCC
66370308 GGGCCTTTTACAAAAATAAACCATTACAACTAAAATTAAACCCATACAAATAAACCCAAGACCAA
1 GGGCCTTTTACAAAAATAAACCATTACAACTAAAATTAAACCCATACAAATAAACCCAAGACCAA
*
66370373 ACCCAAATTTAACCCAATTCAAATCCCAAAGGCCCAAAAACCTAACTACTTAGCCCAAGCCCAAT
66 ACCCAAATTTAACCCAATTCAAATCCCAAAGGCCCAAAAACCTAACTACCTAGCCCAAGCCCAAT
*
66370438 TAGCCCATTAGTCAAACTAGGGTTTCAGAAAAGCTAAAACCCTAG
131 TAGCCCATTAGTCAAACTAGGGTTTCAAAAAAGCTAAAACCCTAG
* *
66370483 GGGCCTTTTACAAAAATAAACCATTGCAACTAAACTTAAACCCATACAAATAAACCCAAGACCAA
1 GGGCCTTTTACAAAAATAAACCATTACAACTAAAATTAAACCCATACAAATAAACCCAAGACCAA
66370548 ACCCAAATTTAACCCAATTCAAATCCCAAAGGCCCAAAAACCTAACTACCTAGCCCAAGCCCAAT
66 ACCCAAATTTAACCCAATTCAAATCCCAAAGGCCCAAAAACCTAACTACCTAGCCCAAGCCCAAT
*
66370613 TAGCCCATTAGTCAAACTAGGGTTTCAAAAAAGCTGAAACCCTAG
131 TAGCCCATTAGTCAAACTAGGGTTTCAAAAAAGCTAAAACCCTAG
66370658 CCACCTTTCG
Statistics
Matches: 170, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
175 170 1.00
ACGTcount: A:0.43, C:0.29, G:0.09, T:0.19
Consensus pattern (175 bp):
GGGCCTTTTACAAAAATAAACCATTACAACTAAAATTAAACCCATACAAATAAACCCAAGACCAA
ACCCAAATTTAACCCAATTCAAATCCCAAAGGCCCAAAAACCTAACTACCTAGCCCAAGCCCAAT
TAGCCCATTAGTCAAACTAGGGTTTCAAAAAAGCTAAAACCCTAG
Found at i:66373041 original size:17 final size:17
Alignment explanation
Indices: 66373019--66373058 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
66373009 GATATTGATA
66373019 AAATTT-AATGATATCAC
1 AAATTTCAAT-ATATCAC
*
66373036 AAATTTCAATATATGAC
1 AAATTTCAATATATCAC
66373053 AAATTT
1 AAATTT
66373059 GGATGACGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (17 bp):
AAATTTCAATATATCAC
Found at i:66378266 original size:13 final size:13
Alignment explanation
Indices: 66378248--66378275 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
66378238 ACCAATTGTT
66378248 TTATGCATTTATA
1 TTATGCATTTATA
66378261 TTATGCATTTATA
1 TTATGCATTTATA
66378274 TT
1 TT
66378276 GAAATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTATGCATTTATA
Found at i:66380442 original size:17 final size:16
Alignment explanation
Indices: 66380413--66380453 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
66380403 ACCGAGTAAA
66380413 TAAAAATATTTTATAT
1 TAAAAATATTTTATAT
*
66380429 TAAAAATATATT-TA-
1 TAAAAATATTTTATAT
66380443 TAAAAATATTT
1 TAAAAATATTT
66380454 CAAAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 10 0.43
15 2 0.09
16 11 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TAAAAATATTTTATAT
Found at i:66391975 original size:23 final size:24
Alignment explanation
Indices: 66391949--66392002 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
66391939 GACGGCTGGT
66391949 GAGAGGAAGACAAGT-G-GAGAAAG
1 GAGAGGAA-ACAAGTGGAGAGAAAG
* *
66391972 GAGATTGAAACACGTGGAGAGAAAG
1 GAGA-GGAAACAAGTGGAGAGAAAG
66391997 GAGAGG
1 GAGAGG
66392003 TGGGGAAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
23 9 0.36
24 5 0.20
25 11 0.44
ACGTcount: A:0.44, C:0.06, G:0.43, T:0.07
Consensus pattern (24 bp):
GAGAGGAAACAAGTGGAGAGAAAG
Found at i:66397489 original size:54 final size:54
Alignment explanation
Indices: 66397431--66397570 Score: 147
Period size: 54 Copynumber: 2.6 Consensus size: 54
66397421 AGAGTACCTT
* *
66397431 ACAAAGGC-AATCCATACAGAGTATGCCACAAAAGCGACCTATACAGAGTACGCC
1 ACAAAGGCGAAT-CATACAGAGTATGCCACAAAAGCGACCTATACAAAGTACACC
* * * * * *
66397485 ACAAAGGCGAGTCATTCAGAGTATGCCACAAAGGCTATCTATACAAAGTATACC
1 ACAAAGGCGAATCATACAGAGTATGCCACAAAAGCGACCTATACAAAGTACACC
* * * * *
66397539 ACAAAGGTGATTTATTCAGAGTACGCCACAAA
1 ACAAAGGCGAATCATACAGAGTATGCCACAAA
66397571 GGTTGATAAG
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 71 0.97
55 2 0.03
ACGTcount: A:0.40, C:0.24, G:0.19, T:0.18
Consensus pattern (54 bp):
ACAAAGGCGAATCATACAGAGTATGCCACAAAAGCGACCTATACAAAGTACACC
Found at i:66397571 original size:54 final size:54
Alignment explanation
Indices: 66397447--66397572 Score: 162
Period size: 54 Copynumber: 2.3 Consensus size: 54
66397437 GCAATCCATA
* * *
66397447 CAGAGTATGCCACAAAAGCGACCTATACAGAGTACGCCACAAAGGCGAGTCATT
1 CAGAGTATGCCACAAAGGCGACCTATACAAAGTACACCACAAAGGCGAGTCATT
* * * * * *
66397501 CAGAGTATGCCACAAAGGCTATCTATACAAAGTATACCACAAAGGTGATTTATT
1 CAGAGTATGCCACAAAGGCGACCTATACAAAGTACACCACAAAGGCGAGTCATT
*
66397555 CAGAGTACGCCACAAAGG
1 CAGAGTATGCCACAAAGG
66397573 TTGATAAGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (54 bp):
CAGAGTATGCCACAAAGGCGACCTATACAAAGTACACCACAAAGGCGAGTCATT
Found at i:66397573 original size:27 final size:27
Alignment explanation
Indices: 66397444--66397573 Score: 129
Period size: 27 Copynumber: 4.8 Consensus size: 27
66397434 AAGGCAATCC
* * *
66397444 ATACAGAGTATGCCACAAAAGCGACCT
1 ATACAGAGTATGCCACAAAGGTGATCT
* *
66397471 ATACAGAGTACGCCACAAAGGCGAGTC-
1 ATACAGAGTATGCCACAAAGGTGA-TCT
*
66397498 ATTCAGAGTATGCCACAAAGGCT-ATCT
1 ATACAGAGTATGCCACAAAGG-TGATCT
* * *
66397525 ATACAAAGTATACCACAAAGGTGATTT
1 ATACAGAGTATGCCACAAAGGTGATCT
* *
66397552 ATTCAGAGTACGCCACAAAGGT
1 ATACAGAGTATGCCACAAAGGT
66397574 TGATAAGATG
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
26 3 0.04
27 81 0.95
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.19
Consensus pattern (27 bp):
ATACAGAGTATGCCACAAAGGTGATCT
Found at i:66402037 original size:20 final size:20
Alignment explanation
Indices: 66402009--66402048 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
66401999 TGACTAAAAT
*
66402009 ATAAATTTATTAATAATTTA
1 ATAAATTTAATAATAATTTA
* *
66402029 ATAACTTTAATAGTAATTTA
1 ATAAATTTAATAATAATTTA
66402049 TCTATTTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (20 bp):
ATAAATTTAATAATAATTTA
Found at i:66409862 original size:59 final size:59
Alignment explanation
Indices: 66409791--66409909 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
66409781 TAGAAAAATC
66409791 TGGTTATGTAAACTATTGAATTAAATTAATTAATTTTATAATAATTACTTTTTGAAGAA
1 TGGTTATGTAAACTATTGAATTAAATTAATTAATTTTATAATAATTACTTTTTGAAGAA
*
66409850 TGGTTATGTAAACTATTGAATTAAATTAATTAATTTTATAATAATTATTTTTTGAAGAA
1 TGGTTATGTAAACTATTGAATTAAATTAATTAATTTTATAATAATTACTTTTTGAAGAA
66409909 T
1 T
66409910 ATTTAAAAGT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (59 bp):
TGGTTATGTAAACTATTGAATTAAATTAATTAATTTTATAATAATTACTTTTTGAAGAA
Found at i:66421184 original size:28 final size:28
Alignment explanation
Indices: 66421126--66421184 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
66421116 TCCTGTAATT
* *
66421126 TTTGGCAGTAACACTACAAATTTTTGTA
1 TTTGGCAGTAACACTACAAATATCTGTA
* *
66421154 TTTGGCAGTTAACACTGCATATATCTG-A
1 TTTGGCAG-TAACACTACAAATATCTGTA
66421182 TTT
1 TTT
66421185 TGGTGATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
29 14 0.54
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (28 bp):
TTTGGCAGTAACACTACAAATATCTGTA
Found at i:66423890 original size:47 final size:48
Alignment explanation
Indices: 66423831--66423959 Score: 188
Period size: 47 Copynumber: 2.7 Consensus size: 48
66423821 ATAGTATGAA
66423831 TATATATATCTTTGTTTAAGCTCAATCCAAAATGTGAGCTTTTAG-TT
1 TATATATATCTTTGTTTAAGCTCAATCCAAAATGTGAGCTTTTAGTTT
* *
66423878 TATATATCTCTTTGTTTAAGCTCAATCCAAAATGTGAGCTTTTGGTTT
1 TATATATATCTTTGTTTAAGCTCAATCCAAAATGTGAGCTTTTAGTTT
* * * *
66423926 TATATAATATCGTTGCTTAAGTTCAATTCAAAAT
1 TATAT-ATATCTTTGTTTAAGCTCAATCCAAAAT
66423960 AAAACTTGTT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
47 43 0.59
48 7 0.10
49 23 0.32
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.44
Consensus pattern (48 bp):
TATATATATCTTTGTTTAAGCTCAATCCAAAATGTGAGCTTTTAGTTT
Found at i:66426078 original size:20 final size:20
Alignment explanation
Indices: 66426027--66426080 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66426017 AATGACATCA
66426027 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66426046 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66426066 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66426081 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66426563 original size:20 final size:20
Alignment explanation
Indices: 66426512--66426565 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66426502 AATGACATCA
66426512 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66426531 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66426551 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66426566 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66426681 original size:485 final size:485
Alignment explanation
Indices: 66425772--66440546 Score: 29532
Period size: 485 Copynumber: 30.5 Consensus size: 485
66425762 ATCCACAATT
66425772 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66425837 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66425902 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66425967 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66426032 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66426097 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66426162 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66426227 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66426257 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66426322 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66426387 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66426452 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66426517 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66426582 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66426647 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66426712 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66426742 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66426807 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66426872 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66426937 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66427002 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66427067 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66427132 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66427197 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66427227 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66427292 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66427357 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66427422 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66427487 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66427552 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66427617 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66427682 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66427712 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66427777 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66427842 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66427907 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66427972 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66428037 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66428102 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66428167 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66428197 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66428262 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66428327 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66428392 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66428457 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66428522 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66428587 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66428652 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66428682 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66428747 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66428812 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66428877 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66428942 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66429007 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66429072 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66429137 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66429167 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66429232 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66429297 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66429362 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66429427 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66429492 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66429557 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66429622 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66429652 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66429717 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66429782 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66429847 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66429912 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66429977 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66430042 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66430107 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66430137 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66430202 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66430267 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66430332 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66430397 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66430462 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66430527 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66430592 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66430622 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66430687 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66430752 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66430817 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66430882 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66430947 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66431012 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66431077 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66431107 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66431172 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66431237 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66431302 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66431367 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66431432 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66431497 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66431562 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66431592 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66431657 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66431722 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66431787 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66431852 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66431917 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66431982 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66432047 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66432077 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66432142 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66432207 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66432272 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66432337 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66432402 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66432467 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66432532 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66432562 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66432627 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66432692 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66432757 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66432822 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66432887 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66432952 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66433017 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66433047 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66433112 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66433177 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66433242 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66433307 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66433372 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66433437 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66433502 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66433532 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66433597 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66433662 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66433727 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66433792 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66433857 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66433922 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66433987 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66434017 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66434082 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66434147 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66434212 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66434277 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66434342 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66434407 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66434472 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66434502 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66434567 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66434632 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66434697 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66434762 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66434827 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66434892 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66434957 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66434987 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66435052 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66435117 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66435182 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66435247 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66435312 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66435377 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66435442 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66435472 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66435537 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66435602 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66435667 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66435732 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66435797 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66435862 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66435927 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66435957 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66436022 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66436087 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66436152 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66436217 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66436282 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66436347 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66436412 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66436442 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66436507 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66436572 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66436637 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66436702 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66436767 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66436832 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66436897 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66436927 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66436992 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66437057 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66437122 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66437187 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66437252 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66437317 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66437382 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66437412 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66437477 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66437542 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66437607 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66437672 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66437737 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66437802 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66437867 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66437897 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66437962 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66438027 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66438092 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66438157 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66438222 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66438287 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66438352 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66438382 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66438447 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66438512 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66438577 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66438642 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66438707 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66438772 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66438837 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66438867 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66438932 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66438997 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66439062 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66439127 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66439192 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66439257 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66439322 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66439352 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66439417 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66439482 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66439547 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66439612 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66439677 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
66439742 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
66439807 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66439837 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66439902 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66439967 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66440032 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
196 CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
66440097 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
261 ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
66440162 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
326 TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
*
66440227 CTTCATTTTTTACCCAAGCTCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
391 CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
*
66440292 CAGGCCTTCGAATCGGGTCAAGTGACTCGA
456 TAGGCCTTCGAATCGGGTCAAGTGACTCGA
66440322 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
1 CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
66440387 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66 ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
66440452 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
131 TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
66440517 CTTTGTCATCCCTATATATAGGTCAATTGA
196 CTTTGTCATCCCTATATATAGGTCAATTGA
66440547 AATACTCATA
Statistics
Matches: 14288, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
485 14288 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (485 bp):
CCCATGATCATTTTTACTTAGATGTCAATTGCACATTAAAAAATATTATAAATAACTAATAAATA
ACAAATAAGAAAAAGGAGTAGTGATTATAAGTTTATCCAAGATTCATGAAAGTGACAATAATATT
TAAATTTTAACATTCATGGCGTAGCAAAACAAGCATGGTAGATTTGACAATATCCACTTATACTC
CTTTGTCATCCCTATATATAGGTCAATTGACAGTAGAAACAAAATAGCGGAATGACATCAAAGCA
ACAACAAACAGTAGAAACAACAGCAAAATAGTGGAAGCAACAACAAAACGCAATAGTTTTTTTTT
TTGCAAATTAGGGCCGGGTCGGACCAAAAAAGCTTACTCGAGGCCCATCCCATTTAGAAAATGGG
CTTCATTTTTTACCCAAGCCCATTTTCGAGTCTATATTTTTATCTAAACTCTCCCACTTTTTGAA
TAGGCCTTCGAATCGGGTCAAGTGACTCGA
Found at i:66427048 original size:20 final size:20
Alignment explanation
Indices: 66426997--66427050 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66426987 AATGACATCA
66426997 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66427016 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66427036 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66427051 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66427533 original size:20 final size:20
Alignment explanation
Indices: 66427482--66427535 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66427472 AATGACATCA
66427482 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66427501 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66427521 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66427536 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66428018 original size:20 final size:20
Alignment explanation
Indices: 66427967--66428020 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66427957 AATGACATCA
66427967 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66427986 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66428006 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66428021 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66428503 original size:20 final size:20
Alignment explanation
Indices: 66428452--66428505 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66428442 AATGACATCA
66428452 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66428471 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66428491 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66428506 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66428988 original size:20 final size:20
Alignment explanation
Indices: 66428937--66428990 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66428927 AATGACATCA
66428937 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66428956 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66428976 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66428991 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66429473 original size:20 final size:20
Alignment explanation
Indices: 66429422--66429475 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66429412 AATGACATCA
66429422 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66429441 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66429461 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66429476 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66429958 original size:20 final size:20
Alignment explanation
Indices: 66429907--66429960 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66429897 AATGACATCA
66429907 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66429926 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66429946 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66429961 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66430443 original size:20 final size:20
Alignment explanation
Indices: 66430392--66430445 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66430382 AATGACATCA
66430392 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66430411 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66430431 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66430446 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66430928 original size:20 final size:20
Alignment explanation
Indices: 66430877--66430930 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66430867 AATGACATCA
66430877 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66430896 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66430916 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66430931 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66431413 original size:20 final size:20
Alignment explanation
Indices: 66431362--66431415 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66431352 AATGACATCA
66431362 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66431381 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66431401 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66431416 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66431898 original size:20 final size:20
Alignment explanation
Indices: 66431847--66431900 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66431837 AATGACATCA
66431847 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66431866 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66431886 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66431901 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66432383 original size:20 final size:20
Alignment explanation
Indices: 66432332--66432385 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66432322 AATGACATCA
66432332 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66432351 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66432371 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66432386 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66432868 original size:20 final size:20
Alignment explanation
Indices: 66432817--66432870 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66432807 AATGACATCA
66432817 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66432836 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66432856 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66432871 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66433353 original size:20 final size:20
Alignment explanation
Indices: 66433302--66433355 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66433292 AATGACATCA
66433302 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66433321 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66433341 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66433356 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66433838 original size:20 final size:20
Alignment explanation
Indices: 66433787--66433840 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66433777 AATGACATCA
66433787 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66433806 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66433826 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66433841 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66434323 original size:20 final size:20
Alignment explanation
Indices: 66434272--66434325 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66434262 AATGACATCA
66434272 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66434291 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66434311 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66434326 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66434808 original size:20 final size:20
Alignment explanation
Indices: 66434757--66434810 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66434747 AATGACATCA
66434757 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66434776 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66434796 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66434811 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66435293 original size:20 final size:20
Alignment explanation
Indices: 66435242--66435295 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66435232 AATGACATCA
66435242 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66435261 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66435281 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66435296 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66435778 original size:20 final size:20
Alignment explanation
Indices: 66435727--66435780 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66435717 AATGACATCA
66435727 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66435746 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66435766 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66435781 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66436263 original size:20 final size:20
Alignment explanation
Indices: 66436212--66436265 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66436202 AATGACATCA
66436212 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66436231 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66436251 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66436266 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66436748 original size:20 final size:20
Alignment explanation
Indices: 66436697--66436750 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66436687 AATGACATCA
66436697 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66436716 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66436736 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66436751 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66437233 original size:20 final size:20
Alignment explanation
Indices: 66437182--66437235 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66437172 AATGACATCA
66437182 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66437201 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66437221 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66437236 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66437718 original size:20 final size:20
Alignment explanation
Indices: 66437667--66437720 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66437657 AATGACATCA
66437667 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66437686 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66437706 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66437721 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66438203 original size:20 final size:20
Alignment explanation
Indices: 66438152--66438205 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66438142 AATGACATCA
66438152 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66438171 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66438191 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66438206 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66438688 original size:20 final size:20
Alignment explanation
Indices: 66438637--66438690 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66438627 AATGACATCA
66438637 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66438656 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66438676 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66438691 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66439173 original size:20 final size:20
Alignment explanation
Indices: 66439122--66439175 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66439112 AATGACATCA
66439122 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66439141 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66439161 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66439176 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66439658 original size:20 final size:20
Alignment explanation
Indices: 66439607--66439660 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66439597 AATGACATCA
66439607 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66439626 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66439646 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66439661 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66440143 original size:20 final size:20
Alignment explanation
Indices: 66440092--66440145 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
66440082 AATGACATCA
66440092 AAGCAACAAC-AAACAGTAG
1 AAGCAACAACAAAACAGTAG
* * * *
66440111 AAACAACAGCAAAATAGTGG
1 AAGCAACAACAAAACAGTAG
66440131 AAGCAACAACAAAAC
1 AAGCAACAACAAAAC
66440146 GCAATAGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.59, C:0.20, G:0.15, T:0.06
Consensus pattern (20 bp):
AAGCAACAACAAAACAGTAG
Found at i:66442686 original size:20 final size:22
Alignment explanation
Indices: 66442630--66442688 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 22
66442620 ATATTGCTTG
*
66442630 TTTTAAATTTATTTTATACTTTA
1 TTTTAAA-TCATTTTATACTTTA
* *
66442653 TTTTAAACCCTTTT-TAC-TTA
1 TTTTAAATCATTTTATACTTTA
*
66442673 TTTTAAATGATTTTAT
1 TTTTAAATCATTTTAT
66442689 TTATTTCAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
20 14 0.48
21 4 0.14
22 4 0.14
23 7 0.24
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAAATCATTTTATACTTTA
Found at i:66443390 original size:34 final size:34
Alignment explanation
Indices: 66443352--66443422 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
66443342 TCAAAAGACC
66443352 AACTTATTCTCGAGGGTCTGAAATGTTGTGTCCT
1 AACTTATTCTCGAGGGTCTGAAATGTTGTGTCCT
66443386 AACTTATTCTCGAGGGTCTGAAATGTTGTGTCCT
1 AACTTATTCTCGAGGGTCTGAAATGTTGTGTCCT
66443420 AAC
1 AAC
66443423 GTACTGGATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.37
Consensus pattern (34 bp):
AACTTATTCTCGAGGGTCTGAAATGTTGTGTCCT
Found at i:66444594 original size:12 final size:12
Alignment explanation
Indices: 66444574--66444616 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
66444564 GAAATGATCG
*
66444574 AATACATAAGTA
1 AATAAATAAGTA
66444586 AATAAATAAGTA
1 AATAAATAAGTA
66444598 AATAAA-AA-TA
1 AATAAATAAGTA
66444608 AATAAATAA
1 AATAAATAA
66444617 AACATGGCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 8 0.28
11 4 0.14
12 17 0.59
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (12 bp):
AATAAATAAGTA
Found at i:66444663 original size:3 final size:3
Alignment explanation
Indices: 66444655--66444768 Score: 99
Period size: 3 Copynumber: 38.7 Consensus size: 3
66444645 AACGAAATCG
* *
66444655 ATA ATA ATA ATA ATA AT- ATAA ATA ATA ATA ATA GTA GTA A-A AT-
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
66444698 ATA ATA ATA CTA ATG ATA ATA ATA ATA GTC ATA ATA AGA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
66444746 TTA GTA ATA ATA ATA ATG ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
66444769 GGGAATAGAA
Statistics
Matches: 88, Mismatches: 19, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
2 6 0.07
3 80 0.91
4 2 0.02
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:66450636 original size:47 final size:46
Alignment explanation
Indices: 66450482--66450672 Score: 231
Period size: 46 Copynumber: 4.2 Consensus size: 46
66450472 ATGAAATGTG
** *
66450482 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAATGAA
* * *
66450528 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAATGAA
* *
66450574 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AAGAAATGAA
* * * * * * *
66450621 TAAGACCATAGTTGAAAGACACTATGGCATCATGTCAA-AGATAAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAATGAA
66450666 TAAGACC
1 TAAGACC
66450673 GTGGATGGGA
Statistics
Matches: 126, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
45 11 0.09
46 77 0.61
47 38 0.30
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAATGAA
Found at i:66453769 original size:9 final size:9
Alignment explanation
Indices: 66453755--66453891 Score: 130
Period size: 9 Copynumber: 14.6 Consensus size: 9
66453745 ATGTATTAGT
66453755 TAAGTTATG
1 TAAGTTATG
66453764 TAAGTTGTTATG
1 TAA---GTTATG
*
66453776 TACGTTATG
1 TAAGTTATG
*
66453785 TGAGTTATG
1 TAAGTTATG
*
66453794 TAAATTATG
1 TAAGTTATG
66453803 TAAGTTATG
1 TAAGTTATG
*
66453812 TGAGTTATG
1 TAAGTTATG
*
66453821 TGAGTTATG
1 TAAGTTATG
66453830 TAAGTTGTTATG
1 TAA---GTTATG
*
66453842 TAAATTATG
1 TAAGTTATG
*
66453851 TAAGTTATA
1 TAAGTTATG
*
66453860 TGAGTTATG
1 TAAGTTATG
66453869 TAAGTTATG
1 TAAGTTATG
* *
66453878 TAATTTATT
1 TAAGTTATG
66453887 TAAGT
1 TAAGT
66453892 AATGATCAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
9 88 0.84
12 17 0.16
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:66453840 original size:48 final size:48
Alignment explanation
Indices: 66453788--66453880 Score: 168
Period size: 48 Copynumber: 1.9 Consensus size: 48
66453778 CGTTATGTGA
* *
66453788 GTTATGTAAATTATGTAAGTTATGTGAGTTATGTGAGTTATGTAAGTT
1 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGTAAGTT
66453836 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGTAA
1 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGTAA
66453881 TTTATTTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.32, C:0.00, G:0.23, T:0.45
Consensus pattern (48 bp):
GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGTAAGTT
Found at i:66454806 original size:427 final size:427
Alignment explanation
Indices: 66454011--66454818 Score: 1580
Period size: 427 Copynumber: 1.9 Consensus size: 427
66454001 TGAATATATT
*
66454011 AATTTTTTAAAATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTATAGC
1 AATTTTTTAAAATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
66454076 TCGACATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGACATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66454141 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAA
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAA
66454206 TTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAATATAAAAA
196 TTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAATATAAAAA
66454271 CTTATTCATACTTCAAATGATAAATAAGCTACAAGAATCAGGTCTGGTTCAAGTTTATTTAAAGG
261 CTTATTCATACTTCAAATGATAAATAAGCTACAAGAATCAGGTCTGGTTCAAGTTTATTTAAAGG
66454336 GCTGCAATTCATACATTTGATTAATGTTATTTAGCCAAATCAAAACATGTCAATTTATTCAATAA
326 GCTGCAATTCATACATTTGATTAATGTTATTTAGCCAAATCAAAACATGTCAATTTATTCAATAA
66454401 TAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
391 TAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
*
66454438 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAAATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
* *
66454503 TCGATATAAGGTAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGACATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66454568 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAA
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAA
66454633 TTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAATATAAAAA
196 TTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAATATAAAAA
66454698 CTTATTCATACTTCAAATGATAAATAAGCTACAAGAATCAGGTCTGGTTCAAGTTTATTTAAAGG
261 CTTATTCATACTTCAAATGATAAATAAGCTACAAGAATCAGGTCTGGTTCAAGTTTATTTAAAGG
66454763 GCTGCAATTCATACATTTGATTAATGTTATTTAGCCAAATCAAAACATGTCAATTT
326 GCTGCAATTCATACATTTGATTAATGTTATTTAGCCAAATCAAAACATGTCAATTT
66454819 CATATGGCTA
Statistics
Matches: 377, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
427 377 1.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (427 bp):
AATTTTTTAAAATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
TCGACATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAA
TTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAATATAAAAA
CTTATTCATACTTCAAATGATAAATAAGCTACAAGAATCAGGTCTGGTTCAAGTTTATTTAAAGG
GCTGCAATTCATACATTTGATTAATGTTATTTAGCCAAATCAAAACATGTCAATTTATTCAATAA
TAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:66459883 original size:16 final size:16
Alignment explanation
Indices: 66459864--66459898 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
66459854 ATTATTTAAT
66459864 ATATAAA-TAAAAAATA
1 ATATAAATTAAAAAA-A
66459880 ATATAAATTAAAAAAA
1 ATATAAATTAAAAAAA
66459896 ATA
1 ATA
66459899 AGTTATATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
ATATAAATTAAAAAAA
Found at i:66459883 original size:18 final size:17
Alignment explanation
Indices: 66459860--66459898 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
66459850 TTAAATTATT
66459860 TAATATATAAATAAAAAA
1 TAATATA-AAATAAAAAA
*
66459878 TAATATAAATTAAAAAA
1 TAATATAAAATAAAAAA
66459895 -AATA
1 TAATA
66459899 AGTTATATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 9 0.45
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
TAATATAAAATAAAAAA
Found at i:66460068 original size:17 final size:17
Alignment explanation
Indices: 66460025--66460068 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
66460015 GAAATCTAGA
* *
66460025 AAATTATTGAAATTTTG
1 AAATTATTTAAAATTTG
*
66460042 AAATCA-TTAAAATTTG
1 AAATTATTTAAAATTTG
66460058 AAATTATTTAA
1 AAATTATTTAA
66460069 GATATATAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (17 bp):
AAATTATTTAAAATTTG
Found at i:66460348 original size:78 final size:79
Alignment explanation
Indices: 66460229--66460376 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 79
66460219 AATTCAACCC
* * * *
66460229 TAAACCATTAACCTTTAATTTCTAAAATTTAAATACTAAACCCTAAACCATGTCCCCTTAACCCC
1 TAAACCATAAACCTCTAATTTCTAAAATTTAAAAACTAAACCCTAAACCATATCCCCTTAACCCC
66460294 TTAACCCTCAACAT
66 TTAACCCTCAACAT
* * *
66460308 TAAACCATAAACC-CTAA-TTCTTAAACTTTAAAAATTAAACCCTAAACTATATCCCCTTAACCC
1 TAAACCATAAACCTCTAATTTC-TAAAATTTAAAAACTAAACCCTAAACCATATCCCCTTAACCC
66460371 CTTAAC
65 CTTAAC
66460377 TATTAACCTT
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
77 3 0.05
78 46 0.75
79 12 0.20
ACGTcount: A:0.40, C:0.30, G:0.01, T:0.30
Consensus pattern (79 bp):
TAAACCATAAACCTCTAATTTCTAAAATTTAAAAACTAAACCCTAAACCATATCCCCTTAACCCC
TTAACCCTCAACAT
Done.