Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 20 of 284
Found at i:6752850 original size:20 final size:20
Alignment explanation
Indices: 6752807--6752859 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
6752797 TAAAGGGCCT
**
6752807 TTTTTATGCA-TTTTATAATT
1 TTTTTATG-ATTTTTATAAAA
6752827 TTTTTATGATTTTTATAAAA
1 TTTTTATGATTTTTATAAAA
6752847 -TTTTAT-ATTTTTA
1 TTTTTATGATTTTTA
6752860 CGATTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 7 0.23
19 7 0.23
20 16 0.53
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (20 bp):
TTTTTATGATTTTTATAAAA
Found at i:6752885 original size:36 final size:37
Alignment explanation
Indices: 6752844--6752938 Score: 97
Period size: 36 Copynumber: 2.6 Consensus size: 37
6752834 GATTTTTATA
6752844 AAATTTTATATTTTTACGATTTTTA-TAAAAAAAAAT
1 AAATTTTATATTTTTACGATTTTTATTAAAAAAAAAT
* * ***
6752880 TAATTTTAATATTTTT--TATTTTTATTAAAATTTAAT
1 AAATTTT-ATATTTTTACGATTTTTATTAAAAAAAAAT
6752916 AAATTTTATATCTTTTACTGATT
1 AAATTTTATAT-TTTTAC-GATT
6752939 AATATTTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
35 11 0.24
36 24 0.52
37 8 0.17
39 3 0.07
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (37 bp):
AAATTTTATATTTTTACGATTTTTATTAAAAAAAAAT
Found at i:6757374 original size:47 final size:47
Alignment explanation
Indices: 6757320--6757513 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
6757310 TTAGGATTTT
** * *
6757320 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
6757367 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
6757414 ATGTGTTGAATGTGAGCTTGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
6757461 ATGTGATGAATATGAACATGCATATATGTGGTAAAGTCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
6757508 ATGTGA
1 ATGTGA
6757514 AATATGTATG
Statistics
Matches: 128, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 128 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:6757544 original size:48 final size:48
Alignment explanation
Indices: 6757483--6758438 Score: 1609
Period size: 48 Copynumber: 19.8 Consensus size: 48
6757473 TGAACATGCA
* *
6757483 TATATGTGGTAAAGTCGAATGG-CTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATATATGAGATATG
*
6757531 CATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
* *
6757579 TATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATATATGAGATATG
* *
6757627 TATATGTGGTAAAGCCGAATGGTCAGTGTAAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGT-GAA-ATATATATGAGATATG
* * *
6757677 TATATGTGGTAAAGTCGAATGG-CTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATATATGAGATATG
* *
6757725 TATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATATATGAGATATG
6757773 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTG-AA-ATATATATGAGATATG
* *
6757823 TATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATATATGAGATATG
6757871 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
6757919 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
6757967 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
6758015 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
6758063 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
6758111 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
6758159 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
6758207 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
6758255 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
6758303 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTG-AA-ATATATATGAGATATG
6758353 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGTCAATGTG-AA-ATATATATGAGATATG
*
6758403 TATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
6758439 GTAGGTGATG
Statistics
Matches: 875, Mismatches: 19, Indels: 28
0.95 0.02 0.03
Matches are distributed among these distances:
47 1 0.00
48 679 0.78
49 19 0.02
50 176 0.20
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATG
Found at i:6758638 original size:37 final size:37
Alignment explanation
Indices: 6758588--6758659 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
6758578 GGAAATATAT
* *
6758588 TCCGGGTAAGACCCGGTGACTAT-GTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACT-TCGTGTGGAGATTTTG
6758625 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
6758660 CGTCTGAGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 1 0.03
37 31 0.97
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
Found at i:6765263 original size:20 final size:21
Alignment explanation
Indices: 6765246--6765288 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6765236 ATTTTTAATA
6765246 CTTTTTATAATTTATTAAAAC
1 CTTTTTATAATTTATTAAAAC
*
6765267 CTTTTTAGAATTATTATTAAAA
1 CTTTTTATAA-T-TTATTAAAA
6765289 ATAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 1 0.05
23 9 0.47
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.51
Consensus pattern (21 bp):
CTTTTTATAATTTATTAAAAC
Found at i:6767874 original size:27 final size:25
Alignment explanation
Indices: 6767822--6767876 Score: 56
Period size: 27 Copynumber: 2.1 Consensus size: 25
6767812 GATTTAGTAG
* **
6767822 TGGGGAAAGAGTTTTCCTCTAAAGA
1 TGGGGAAAGAGTTCTCAACTAAAGA
*
6767847 TGGNNGGAAAGAGTTCTCAACTATAGA
1 TGG--GGAAAGAGTTCTCAACTAAAGA
6767874 TGG
1 TGG
6767877 TTTTATCGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
25 3 0.12
27 21 0.88
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.25
Consensus pattern (25 bp):
TGGGGAAAGAGTTCTCAACTAAAGA
Found at i:6770463 original size:12 final size:12
Alignment explanation
Indices: 6770446--6770470 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6770436 TTTTAGTAAG
6770446 ATTTAATATTAA
1 ATTTAATATTAA
6770458 ATTTAATATTAA
1 ATTTAATATTAA
6770470 A
1 A
6770471 GTGATTAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:6779183 original size:35 final size:34
Alignment explanation
Indices: 6779133--6779231 Score: 117
Period size: 35 Copynumber: 2.8 Consensus size: 34
6779123 CATAGGTAAG
*
6779133 TACATGTAAGCTTATATTGAACTTGTATATTCGAC
1 TACATGTGAGCTTATATTGAA-TTGTATATTCGAC
* * * *
6779168 TGCATGTGAGGTTATATTGAATTTTAGTATTCGAT
1 TACATGTGAGCTTATATTGAATTGTA-TATTCGAC
*
6779203 TACATGTGAACTTATATTGAAATTGTATA
1 TACATGTGAGCTTATATTG-AATTGTATA
6779232 CTCGGATATA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
34 4 0.08
35 43 0.81
36 6 0.11
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.42
Consensus pattern (34 bp):
TACATGTGAGCTTATATTGAATTGTATATTCGAC
Found at i:6792171 original size:39 final size:40
Alignment explanation
Indices: 6792076--6792298 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
6792066 TTGAATGATG
*
6792076 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
6792114 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
6792155 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
6792194 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
6792233 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
6792272 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
6792299 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:6792262 original size:79 final size:81
Alignment explanation
Indices: 6792076--6792298 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
6792066 TTGAATGATG
* * *
6792076 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
6792137 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
6792155 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
6792217 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
6792233 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
6792297 TG
66 TG
6792299 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:6792320 original size:79 final size:79
Alignment explanation
Indices: 6792076--6792331 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
6792066 TTGAATGATG
* * * *
6792076 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
6792137 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
6792155 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
6792219 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
6792233 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
6792297 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
6792313 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
6792332 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:6793750 original size:24 final size:24
Alignment explanation
Indices: 6793702--6793871 Score: 243
Period size: 24 Copynumber: 7.1 Consensus size: 24
6793692 GCCTAGCCTC
*
6793702 TTTAATAATTGGGGCA-AAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
6793725 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
* *
6793749 TTCAATACCTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
* *
6793773 TTTGATAACTGGGGCATTAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
* *
6793797 TTCAATAACTAGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
*
6793821 TTTGATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
* *
6793845 TTTAATCACTGGGGCATAAGACCT
1 TTTAATAACTGGGGCATAAGCCCT
6793869 TTT
1 TTT
6793872 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
23 15 0.12
24 114 0.88
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
TTTAATAACTGGGGCATAAGCCCT
Found at i:6793947 original size:20 final size:20
Alignment explanation
Indices: 6793922--6793987 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
6793912 TATGAATACC
6793922 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
6793942 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
6793962 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
6793982 CCATGT
1 TCATGT
6793988 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:6793952 original size:11 final size:11
Alignment explanation
Indices: 6793922--6793976 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
6793912 TATGAATACC
6793922 TCATGTGCATA
1 TCATGTGCATA
*
6793933 TCA--TACATA
1 TCATGTGCATA
6793942 TCATGTGCATA
1 TCATGTGCATA
* *
6793953 TCA--TACATG
1 TCATGTGCATA
6793962 TCATGTGCATA
1 TCATGTGCATA
6793973 TCAT
1 TCAT
6793977 ACATACCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:6794052 original size:25 final size:25
Alignment explanation
Indices: 6794024--6794071 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
6794014 ATATATAAAC
*
6794024 CCTAGGGGTAAAACGGTCAATTTTA
1 CCTAGGGGCAAAACGGTCAATTTTA
6794049 CCTAGGGGCAAAACGGTCAATTT
1 CCTAGGGGCAAAACGGTCAATTT
6794072 CATATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCAATTTTA
Found at i:6801897 original size:24 final size:24
Alignment explanation
Indices: 6801849--6802018 Score: 270
Period size: 24 Copynumber: 7.1 Consensus size: 24
6801839 GCCTAGCCTC
6801849 TTTAATAACTGGGGCA-AAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
6801872 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
*
6801896 TTCAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
*
6801920 TTTGATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
* *
6801944 TTTGATAACTGGGGCATAGGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
6801968 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
* * *
6801992 TTTAATCACTGGGCCATAAGACCT
1 TTTAATAACTGGGGCATAAGCCCT
6802016 TTT
1 TTT
6802019 GCACTTCCTC
Statistics
Matches: 137, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
23 16 0.12
24 121 0.88
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
TTTAATAACTGGGGCATAAGCCCT
Found at i:6802094 original size:20 final size:20
Alignment explanation
Indices: 6802069--6802134 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
6802059 TATGAATACC
6802069 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
6802089 TCATGTTCATATCATACATG
1 TCATGTGCATATCATACATA
6802109 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
6802129 CCATGT
1 TCATGT
6802135 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:6805559 original size:12 final size:12
Alignment explanation
Indices: 6805524--6805598 Score: 78
Period size: 12 Copynumber: 6.1 Consensus size: 12
6805514 TAAAAAAATT
6805524 TATTAAATTTAA
1 TATTAAATTTAA
* * *
6805536 TTTTATATTTTAT
1 TATTA-AATTTAA
*
6805549 TATTTAATTTAA
1 TATTAAATTTAA
6805561 TATTAAATTTAA
1 TATTAAATTTAA
*
6805573 TATTAAATTTTAT
1 TATTAAA-TTTAA
*
6805586 TATTTAATTTAA
1 TATTAAATTTAA
6805598 T
1 T
6805599 CATGCATGAC
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
12 32 0.64
13 18 0.36
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTAAATTTAA
Found at i:6805566 original size:37 final size:37
Alignment explanation
Indices: 6805524--6805598 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
6805514 TAAAAAAATT
* *
6805524 TATTAAATTTAATTTTATATTTTATTATTTAATTTAA
1 TATTAAATTTAATATTAAATTTTATTATTTAATTTAA
6805561 TATTAAATTTAATATTAAATTTTATTATTTAATTTAA
1 TATTAAATTTAATATTAAATTTTATTATTTAATTTAA
6805598 T
1 T
6805599 CATGCATGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (37 bp):
TATTAAATTTAATATTAAATTTTATTATTTAATTTAA
Found at i:6805584 original size:25 final size:24
Alignment explanation
Indices: 6805524--6805598 Score: 78
Period size: 25 Copynumber: 3.0 Consensus size: 24
6805514 TAAAAAAATT
* * *
6805524 TATTAAATTTAATTTTATATTTTAT
1 TATTAAATTTAATATTA-AATTTAA
*
6805549 TATTTAATTTAATATTAAATTTAA
1 TATTAAATTTAATATTAAATTTAA
* *
6805573 TATTAAATTTTATTATTTAATTTAA
1 TATTAAA-TTTAATATTAAATTTAA
6805598 T
1 T
6805599 CATGCATGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
24 11 0.26
25 31 0.74
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TATTAAATTTAATATTAAATTTAA
Found at i:6812015 original size:47 final size:46
Alignment explanation
Indices: 6811956--6812046 Score: 155
Period size: 47 Copynumber: 2.0 Consensus size: 46
6811946 AGATTGATAG
6811956 CAGGAATAAGGAGTATAAACTCCTCAAACCACCATGACCATTCACGA
1 CAGGAATAAGGAGTATAAACTCCTCAAACCA-CATGACCATTCACGA
* *
6812003 CAGGAATGAGGAGTATAAACTCCTCAAACCACATGACTATTCAC
1 CAGGAATAAGGAGTATAAACTCCTCAAACCACATGACCATTCAC
6812047 TGGAGAGGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
46 12 0.29
47 30 0.71
ACGTcount: A:0.40, C:0.26, G:0.15, T:0.19
Consensus pattern (46 bp):
CAGGAATAAGGAGTATAAACTCCTCAAACCACATGACCATTCACGA
Found at i:6818968 original size:20 final size:20
Alignment explanation
Indices: 6818928--6818986 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
6818918 AATTTAATGC
* *
6818928 TTATCTTAATAAT-ATTTTA
1 TTATCTTAATATTAAATTTA
*
6818947 TTAAT-TTAATATTAACTTTA
1 TT-ATCTTAATATTAAATTTA
6818967 TTATCTTAATATTAAATTTA
1 TTATCTTAATATTAAATTTA
6818987 ATTTAATGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 11 0.32
20 23 0.68
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (20 bp):
TTATCTTAATATTAAATTTA
Found at i:6819044 original size:62 final size:59
Alignment explanation
Indices: 6818972--6819088 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
6818962 CTTTATTATC
* * * *
6818972 TTAATATTAAATTTAATTTAATGTTTATCTTATAGATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAACATTATATTAATTTAATAAGAT
*
6819034 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAACATTATATTAATTTAATA
6819089 TTGAAGTTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 21 0.42
60 1 0.02
61 1 0.02
62 27 0.54
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAACATTATATTAATTTAATAAGAT
Found at i:6821603 original size:18 final size:18
Alignment explanation
Indices: 6821582--6821639 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
6821572 ACAAAATATT
6821582 AAATTAAAATATAATAAA
1 AAATTAAAATATAATAAA
* *
6821600 AAATATAAAA-ATTATACA
1 AAAT-TAAAATATAATAAA
* *
6821618 ACATTAAAATATAATAAG
1 AAATTAAAATATAATAAA
6821636 AAAT
1 AAAT
6821640 ATTCTTACCA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
17 5 0.16
18 21 0.68
19 5 0.16
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (18 bp):
AAATTAAAATATAATAAA
Found at i:6822300 original size:23 final size:23
Alignment explanation
Indices: 6822270--6822314 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
6822260 TATAAATTAA
6822270 TTTTGTAAATAATGTAAAAAAAT
1 TTTTGTAAATAATGTAAAAAAAT
6822293 TTTTGTAAATAATGTAAAAAAA
1 TTTTGTAAATAATGTAAAAAAA
6822315 ATGTAAATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (23 bp):
TTTTGTAAATAATGTAAAAAAAT
Found at i:6828986 original size:21 final size:20
Alignment explanation
Indices: 6828947--6828986 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
6828937 CCAAAAAGTA
* *
6828947 TAATTTTTATGTGTTTTTAG
1 TAATTTTTATATATTTTTAG
6828967 TAATTTTATATATATTTTTA
1 TAATTTT-TATATATTTTTA
6828987 TAAAATATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (20 bp):
TAATTTTTATATATTTTTAG
Found at i:6829040 original size:18 final size:18
Alignment explanation
Indices: 6829017--6829056 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
6829007 TATTATTTTG
6829017 AAAAATATATAAAAT-TAT
1 AAAAATAT-TAAAATATAT
*
6829035 AAAAATATTTAAATATAT
1 AAAAATATTAAAATATAT
6829053 AAAA
1 AAAA
6829057 GCCTATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAAATATTAAAATATAT
Found at i:6830059 original size:24 final size:25
Alignment explanation
Indices: 6830015--6830064 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
6830005 TTTAATATTT
* * *
6830015 TTTTCATTTTTGTAATTTTAATTAA
1 TTTTAATTTTTGTAATATTAACTAA
6830040 TTTTAATTTTTG-AATATTAACTAA
1 TTTTAATTTTTGTAATATTAACTAA
6830064 T
1 T
6830065 ATTTTTTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (25 bp):
TTTTAATTTTTGTAATATTAACTAA
Found at i:6830066 original size:54 final size:54
Alignment explanation
Indices: 6829984--6830096 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
6829974 ATGGTAACGG
*** *
6829984 AATTTTAAACTTTGAATATTTTTTAATATTTTTTTCATTTTTGTAATTTTAATT
1 AATTTTAAACTTTGAATATTAACTAATATTTTTTTCATTTATGTAATTTTAATT
**
6830038 AATTTTAATTTTTGAATATTAACTAATATTTTTTTCATTTATGTAATTTTAATT
1 AATTTTAAACTTTGAATATTAACTAATATTTTTTTCATTTATGTAATTTTAATT
6830092 AATTT
1 AATTT
6830097 GTATTTTATA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (54 bp):
AATTTTAAACTTTGAATATTAACTAATATTTTTTTCATTTATGTAATTTTAATT
Found at i:6832022 original size:45 final size:46
Alignment explanation
Indices: 6831890--6832251 Score: 247
Period size: 47 Copynumber: 7.7 Consensus size: 46
6831880 TTTGTGTGCT
* *
6831890 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * *
6831936 AGTGTAAGACCATGTCTGGGACATAGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
* * *
6831984 AGTGTATGGCATGTCT-AGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
** * * *
6832029 AGTGTAAGACATGTCTGGGGTATGCATC-GACTACGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* * * * * *
6832073 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGATATGTGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA--TGAGAGCC
* * * ** * *
6832123 AGTGTAAGACCATGTTTGGGACATGACGTCGGCCTCAATTTCGATAGTC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGAGAT-GAGAGCC
* *
6832172 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGGATGA-A-CC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA--GATGAGAGCC
6832219 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
6832252 ATTATACCCT
Statistics
Matches: 248, Mismatches: 48, Indels: 38
0.74 0.14 0.11
Matches are distributed among these distances:
44 11 0.04
45 47 0.19
46 37 0.15
47 54 0.22
48 31 0.12
49 34 0.14
50 34 0.14
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:6832192 original size:49 final size:50
Alignment explanation
Indices: 6832070--6832253 Score: 152
Period size: 49 Copynumber: 3.8 Consensus size: 50
6832060 TACGAGATGT
*
6832070 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGATATGTGAAA
1 GTCAGTGTAAGACCATGTCTGGGACATGACATCAGCATAGATATGTGAAA
* * * * *
6832120 G-CTAGTGTAAGACCATGTTTGGGACATGACGTCGGCCTCA-AT-T-TCGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGACATCAGCAT-AGATATGT-GAAA
* * *
6832169 GTCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGAT-GGATG-AA
1 GTCAGTGTAAGACCATGTCTGGGACATGACATCAGCA-TAGATATG-TGAAA
* * *
6832217 -CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 GTCAGTGTAAGACCATGTCTGGGACATGACATCAGCAT
6832254 TATACCCTAT
Statistics
Matches: 110, Mismatches: 14, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
47 31 0.28
48 8 0.07
49 35 0.32
50 35 0.32
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGACATCAGCATAGATATGTGAAA
Found at i:6834837 original size:40 final size:40
Alignment explanation
Indices: 6834782--6834859 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
6834772 ACCGAATAGA
6834782 CCAGAATGTCCACAGTGCGGCAGAAGTCATTTTGGTGAAT
1 CCAGAATGTCCACAGTGCGGCAGAAGTCATTTTGGTGAAT
* * * *
6834822 CCAGAATGTTCACAGTTCGGTAGACGTCATTTTGGTGA
1 CCAGAATGTCCACAGTGCGGCAGAAGTCATTTTGGTGA
6834860 GTGCCGAGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (40 bp):
CCAGAATGTCCACAGTGCGGCAGAAGTCATTTTGGTGAAT
Found at i:6839849 original size:46 final size:45
Alignment explanation
Indices: 6839762--6839974 Score: 130
Period size: 46 Copynumber: 4.6 Consensus size: 45
6839752 GAGACAAGAG
** * *
6839762 CTAGTGTAAGACATGTCTAAGACATGCGTCGGCCTCGAGATGTAAT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATGT-AT
* * *
6839808 CTAGTGTAAGACATGTCTGGGACATGCATC-TACTACTAGATGTGT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGACT-CGAGATGTAT
* * * * **
6839853 C-AGTGTAAGACCATGTTTGGGACATGACGTCAGCCTCGATTTTGATAGT
1 CTAGTGTAAGA-CATGTCTGGGACATG-CATCGGACTCGA-GATG-TA-T
* *
6839902 C-AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGGATG-AA
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGACTCGA--GATGTAT
* *
6839948 CCAGTGTAAGACCATGTCTAGGACATG
1 CTAGTGTAAGA-CATGTCTGGGACATG
6839975 GCATTGGCAT
Statistics
Matches: 133, Mismatches: 24, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
44 9 0.07
45 18 0.14
46 41 0.31
47 28 0.21
48 6 0.05
49 30 0.23
50 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (45 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATGTAT
Found at i:6841744 original size:7 final size:7
Alignment explanation
Indices: 6841734--6841758 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
6841724 TGTCATTTCA
6841734 TATTTAG
1 TATTTAG
6841741 TATTTAG
1 TATTTAG
6841748 TATTTAG
1 TATTTAG
6841755 TATT
1 TATT
6841759 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:6856897 original size:46 final size:46
Alignment explanation
Indices: 6856847--6857022 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
6856837 TGGTTGAGCA
*
6856847 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
6856893 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
6856940 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * **
6856986 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
6857023 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:6857003 original size:93 final size:93
Alignment explanation
Indices: 6856844--6857013 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
6856834 GGATGGTTGA
* *
6856844 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
6856909 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
6856937 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
6857002 TGAGTCCGAGTT
66 TGAGTCCGAGTT
6857014 TGCTTATGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:6861773 original size:39 final size:39
Alignment explanation
Indices: 6861729--6861883 Score: 233
Period size: 39 Copynumber: 4.0 Consensus size: 39
6861719 ATTATATTAT
* *
6861729 CAGCACAAAGCCTGCCG-GACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTG-CGAGACTTTAGCCCGGATACATTTC
* *
6861768 CAGCACGAAGCCTGCGAGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTTC
6861807 CAG-ATCGAAGCCTGCGAGACTTTAGCCCGGATACATTTC
1 CAGCA-CGAAGCCTGCGAGACTTTAGCCCGGATACATTTC
*
6861846 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTT
6861884 TCAGTGTCTT
Statistics
Matches: 106, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
38 3 0.03
39 102 0.96
40 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTTC
Found at i:6867536 original size:39 final size:39
Alignment explanation
Indices: 6867492--6867919 Score: 820
Period size: 39 Copynumber: 11.0 Consensus size: 39
6867482 ATTATATTAT
* * *
6867492 CAGCACAAAGCCTGCGAGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
6867531 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
6867570 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
6867609 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
6867648 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
6867687 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
6867726 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
6867765 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
6867804 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
6867843 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
6867882 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
6867920 TCAGTGTCTT
Statistics
Matches: 386, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 386 1.00
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:6873585 original size:39 final size:39
Alignment explanation
Indices: 6873528--6873604 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
6873518 ATTATATTAT
6873528 CAGCACAAAGCCTACGGGACTTTAGCCCAGATACATTTC
1 CAGCACAAAGCCTACGGGACTTTAGCCCAGATACATTTC
* * *
6873567 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACAAAGCCTACGGGACTTTAGCCCAGATACATTT
6873605 TCAGTGTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (39 bp):
CAGCACAAAGCCTACGGGACTTTAGCCCAGATACATTTC
Found at i:6877756 original size:40 final size:40
Alignment explanation
Indices: 6877661--6877878 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
6877651 AAGCCAAGTA
* * * *
6877661 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATT
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
6877699 CTTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
6877739 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
6877779 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
6877819 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCAC-AAATG
6877860 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
6877879 TTATCATCCA
Statistics
Matches: 158, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 11 0.07
39 17 0.11
40 106 0.67
41 24 0.15
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:6881998 original size:37 final size:37
Alignment explanation
Indices: 6881939--6882010 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
6881929 AGCTCAGACG
* *
6881939 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
6881976 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
6882011 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:6882207 original size:46 final size:46
Alignment explanation
Indices: 6882154--6882288 Score: 123
Period size: 46 Copynumber: 2.9 Consensus size: 46
6882144 TATATATACA
* * *
6882154 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * * *
6882200 CATCTCATACACGTTTCGCATTAGTCATTCGGCCTTACCACATAT-
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * *
6882245 -AT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CATCTCA--TACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
6882289 CATACGCATG
Statistics
Matches: 71, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
43 3 0.04
44 2 0.03
45 4 0.06
46 39 0.55
47 23 0.32
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:6882282 original size:47 final size:47
Alignment explanation
Indices: 6882225--6882314 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 47
6882215 TCGCATTAGT
* ** *
6882225 CATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGC
1 CATTCGGCCTTACCACACATACGCATGTTCACATCCATCACATTGGC
*
6882272 CATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTCGGCCTTACCACACATACGCATGTTCACATCCATCACAT
6882315 AAAATCCTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
CATTCGGCCTTACCACACATACGCATGTTCACATCCATCACATTGGC
Found at i:6889353 original size:40 final size:40
Alignment explanation
Indices: 6889285--6889488 Score: 272
Period size: 40 Copynumber: 5.1 Consensus size: 40
6889275 CAGGATTCAA
* *
6889285 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
6889324 CCGGATATAGTAACTTGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
6889364 CCGGATATAGTAACTCGGACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
6889404 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
6889444 CCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGC
6889485 CCGG
1 CCGG
6889489 TTATCATCCA
Statistics
Matches: 148, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 16 0.11
40 103 0.70
41 24 0.16
42 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:6891435 original size:43 final size:43
Alignment explanation
Indices: 6891383--6891785 Score: 561
Period size: 43 Copynumber: 9.4 Consensus size: 43
6891373 TGGCAATACA
*
6891383 TGATT-CGTGTAAGATCATGTCTGGGACATTGGCATCGATAAG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAAG
6891425 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAAG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAAG
6891468 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAAG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAAG
*
6891511 TGATTACGTGTAAAACCATGTCTGGGACATTGGCATCGATAAG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAAG
* * *
6891554 TGATTACGTGTAAGACCATGTCTGGGACATTGTCATCGTTATG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAAG
*
6891597 TGATT-CTGTGTAAGACCATGTCTTGGACATTGGCATCGATATA-
1 TGATTAC-GTGTAAGACCATGTCTGGGACATTGGCATCGATA-AG
* * *
6891640 TGATT-CGTGTAAGACCCTGTCTGAGACATTAGCATCGATAAG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAAG
6891682 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATATA-
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATA-AG
* * * * *
6891725 TGATT-TGTATAAGACCATAG-CAGGG-CTATTGGCATCAATATG
1 TGATTACGTGTAAGACCAT-GTCTGGGAC-ATTGGCATCGATAAG
* *
6891767 TGATAACATGTAAGACCAT
1 TGATTACGTGTAAGACCAT
6891786 ATCTAGGATA
Statistics
Matches: 325, Mismatches: 26, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
41 2 0.01
42 72 0.22
43 250 0.77
44 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAAG
Found at i:6891811 original size:23 final size:23
Alignment explanation
Indices: 6891785--6891831 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
6891775 TGTAAGACCA
6891785 TATCTAGGATATGGCATTGTATG
1 TATCTAGGATATGGCATTGTATG
*
6891808 TATCTAGGATATGGTATTGTATG
1 TATCTAGGATATGGCATTGTATG
6891831 T
1 T
6891832 GATATACGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.06, G:0.26, T:0.43
Consensus pattern (23 bp):
TATCTAGGATATGGCATTGTATG
Found at i:6896016 original size:16 final size:17
Alignment explanation
Indices: 6895991--6896023 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
6895981 TCAAAATCTT
6895991 AGTTGGGAAAT-TAAAG
1 AGTTGGGAAATCTAAAG
*
6896007 AGTTGTGAAATCTAAAG
1 AGTTGGGAAATCTAAAG
6896024 CTATGTGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.42, C:0.03, G:0.27, T:0.27
Consensus pattern (17 bp):
AGTTGGGAAATCTAAAG
Found at i:6898225 original size:43 final size:43
Alignment explanation
Indices: 6898172--6898446 Score: 283
Period size: 43 Copynumber: 6.4 Consensus size: 43
6898162 ACATGATTCG
6898172 TGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACA
** *
6898215 TGTAAGACCATGTCTAAGACATTGGCATCGATATA-TGATT-CG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATA-AGTGATTACA
*
6898257 TGTAAGACCCTGTCTGGGACATTGGCATCGATAAGTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACA
* * * * * * *
6898300 TGTAAGACGATGTCTAGGACATTGGCATAGTTATGTGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACA
* * * * *
6898343 TATAAGACCATTTTTGGGACATTGGCATCGATATA-TGAAT-CG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATA-AGTGATTACA
* * * *
6898385 TATAAGACCATAG--TGGGGCTATTGGCATCGATATGTGATAACA
1 TGTAAGACCAT-GTCTGGGAC-ATTGGCATCGATAAGTGATTACA
*
6898428 TGTAAGACCATATCTGGGA
1 TGTAAGACCATGTCTGGGA
6898447 TATGACATTG
Statistics
Matches: 189, Mismatches: 33, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
41 6 0.03
42 65 0.34
43 113 0.60
44 5 0.03
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACA
Found at i:6898391 original size:85 final size:85
Alignment explanation
Indices: 6898164--6898375 Score: 334
Period size: 85 Copynumber: 2.5 Consensus size: 85
6898154 ATGGAAATAC
6898164 ATGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACATGTAAGACCATGTC
1 ATGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACATGTAAGACCATGTC
*
6898229 TAAGACATTGGCATCGATAT
66 TAAGACATTGGCATAGATAT
* *
6898249 ATGATTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATAAGTGATTACATGTAAGACGATGTC
1 ATGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACATGTAAGACCATGTC
* *
6898314 TAGGACATTGGCATAGTTAT
66 TAAGACATTGGCATAGATAT
* * * *
6898334 GTGATTTCGTATAAGACCATTTTTGGGACATTGGCATCGATA
1 ATGA-TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATA
6898376 TATGAATCGT
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
85 83 0.72
86 33 0.28
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (85 bp):
ATGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACATGTAAGACCATGTC
TAAGACATTGGCATAGATAT
Found at i:6898409 original size:128 final size:127
Alignment explanation
Indices: 6898172--6898438 Score: 338
Period size: 128 Copynumber: 2.1 Consensus size: 127
6898162 ACATGATTCG
* * *
6898172 TGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACATGTAAGACCATGTCTAAGACAT
1 TGTAAGACCATGTCTAGGACATTGGCATAGATAAGTGATTACATATAAGACCATGTCTAAGACAT
* * * *
6898237 TGGCATCGATATATGATTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATAAGTGATTACA
66 TGGCATCGATATATGAATCGTATAAGACCATG-CTGGGACATTGGCATCGATAAGTGATAACA
* * * * * * * **
6898300 TGTAAGACGATGTCTAGGACATTGGCATAGTTATGTGATTTCGTATAAGACCATTTTTGGGACAT
1 TGTAAGACCATGTCTAGGACATTGGCATAGATAAGTGATTACATATAAGACCATGTCTAAGACAT
* *
6898365 TGGCATCGATATATGAATCGTATAAGACCATAG-TGGGGCTATTGGCATCGATATGTGATAACA
66 TGGCATCGATATATGAATCGTATAAGACCAT-GCTGGGAC-ATTGGCATCGATAAGTGATAACA
6898428 TGTAAGACCAT
1 TGTAAGACCAT
6898439 ATCTGGGATA
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
127 5 0.04
128 112 0.95
129 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (127 bp):
TGTAAGACCATGTCTAGGACATTGGCATAGATAAGTGATTACATATAAGACCATGTCTAAGACAT
TGGCATCGATATATGAATCGTATAAGACCATGCTGGGACATTGGCATCGATAAGTGATAACA
Found at i:6898446 original size:85 final size:84
Alignment explanation
Indices: 6898165--6898446 Score: 327
Period size: 85 Copynumber: 3.3 Consensus size: 84
6898155 TGGAAATACA
6898165 TGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACATGTAAGACCATGTCT
1 TGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACATGTAAGACCATG-CT
* *
6898230 AAGACATTGGCATCGATATA
65 AGGACATTGGCATCGATATG
* *
6898250 TGATTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATAAGTGATTACATGTAAGACGATGTCT
1 TGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACATGTAAGACCATG-CT
* *
6898315 AGGACATTGGCATAGTTATG
65 AGGACATTGGCATCGATATG
* * * * * *
6898335 TGATTTCGTATAAGACCATTTTTGGGACATTGGCATCGATATA-TGAAT-CGTATAAGACCATAG
1 TGA-TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATA-AGTGATTACATGTAAGACCAT-G
* *
6898398 -TGGGGCTATTGGCATCGATATG
63 CTAGGAC-ATTGGCATCGATATG
* * *
6898420 TGATAACATGTAAGACCATATCTGGGA
1 TGAT-TCGTGTAAGACCATGTCTGGGA
6898447 TATGACATTG
Statistics
Matches: 169, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
84 5 0.03
85 125 0.74
86 38 0.22
87 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (84 bp):
TGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAAGTGATTACATGTAAGACCATGCTA
GGACATTGGCATCGATATG
Found at i:6903162 original size:19 final size:20
Alignment explanation
Indices: 6903119--6903163 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
6903109 CAGGAGGAGA
6903119 CATGGCCGTGCGATAAGTCGC
1 CATGGCCGTGCGATAAG-CGC
*
6903140 CATGGCCGTGTGATAAG-GC
1 CATGGCCGTGCGATAAGCGC
6903159 CATGG
1 CATGG
6903164 GCAAAACTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.30
21 16 0.70
ACGTcount: A:0.20, C:0.24, G:0.36, T:0.20
Consensus pattern (20 bp):
CATGGCCGTGCGATAAGCGC
Found at i:6904464 original size:27 final size:26
Alignment explanation
Indices: 6904415--6904465 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
6904405 TGTTTAAAAA
*
6904415 ACTTTTTATTTATTATTTTTATTTTC
1 ACTTTTTATTTATTATTTGTATTTTC
6904441 ACTTTTATATTTATT-TATTGTATTT
1 ACTTTT-TATTTATTAT-TTGTATTT
6904466 AAGTACTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.71
Consensus pattern (26 bp):
ACTTTTTATTTATTATTTGTATTTTC
Found at i:6911048 original size:27 final size:27
Alignment explanation
Indices: 6911018--6911198 Score: 138
Period size: 27 Copynumber: 6.8 Consensus size: 27
6911008 ATCAGAGCAT
* *
6911018 ATAAAGGCAATATAGTCATTTTACCAC
1 ATAAGGGCAAAATAGTCATTTTACCAC
* * *
6911045 ATAAGGGCAAACT-GCCATTCTACCAC
1 ATAAGGGCAAAATAGTCATTTTACCAC
* * *
6911071 ATAAGGGAAAAACAGTCATTTTACTAC
1 ATAAGGGCAAAATAGTCATTTTACCAC
* * * *
6911098 GTAAGGGCAAAACAATCATTTTACCAT
1 ATAAGGGCAAAATAGTCATTTTACCAC
* * **
6911125 GTAGGGGC-ATTTCAGTCATTTTATCCAC
1 ATAAGGGCAAAAT-AGTCATTTTA-CCAC
*
6911153 -T-AGGGCAAAATAGTAATTTTACCAC
1 ATAAGGGCAAAATAGTCATTTTACCAC
*
6911178 AT-ATGGCAAAATAGTCTATTT
1 ATAAGGGCAAAATAGTC-ATTT
6911199 ACTATATAGG
Statistics
Matches: 120, Mismatches: 28, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
25 4 0.03
26 48 0.40
27 65 0.54
28 3 0.03
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (27 bp):
ATAAGGGCAAAATAGTCATTTTACCAC
Found at i:6913385 original size:24 final size:25
Alignment explanation
Indices: 6913358--6913420 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 25
6913348 TCAACCGTAT
* * *
6913358 TCGCACACATAGTGCTA-ATTACAC
1 TCGCACACATAGTGCCATAGTAAAC
6913382 TCGCACACATAGTGCCATAGTAAAC
1 TCGCACACATAGTGCCATAGTAAAC
6913407 -CGCACACATAGTGC
1 TCGCACACATAGTGC
6913421 ATTGGAGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 30 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (25 bp):
TCGCACACATAGTGCCATAGTAAAC
Found at i:6915269 original size:14 final size:14
Alignment explanation
Indices: 6915250--6915279 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6915240 AACCAAGCGT
6915250 AAACCACTTATCGA
1 AAACCACTTATCGA
6915264 AAACCACTTATCGA
1 AAACCACTTATCGA
6915278 AA
1 AA
6915280 CATAAAACTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.27, G:0.07, T:0.20
Consensus pattern (14 bp):
AAACCACTTATCGA
Found at i:6918063 original size:29 final size:29
Alignment explanation
Indices: 6918000--6918067 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
6917990 TAATCAACCG
6918000 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
6918029 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
6918058 CGCACACTTA
1 CGCACACTTA
6918068 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:6918179 original size:174 final size:174
Alignment explanation
Indices: 6917889--6918216 Score: 629
Period size: 174 Copynumber: 1.9 Consensus size: 174
6917879 AACTCAAGGT
*
6917889 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
6917954 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
6918019 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
6918063 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
6918128 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
6918193 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
6918217 TGTACAATTT
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 151 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:6918208 original size:29 final size:30
Alignment explanation
Indices: 6918169--6918247 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
6918159 CTTAATAATC
6918169 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
6918199 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
6918228 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
6918248 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:6920281 original size:47 final size:48
Alignment explanation
Indices: 6920178--6920429 Score: 261
Period size: 48 Copynumber: 5.4 Consensus size: 48
6920168 TATCTCGGAT
* * * *
6920178 ATGGTCTTACATGGGATCACATATCGGTGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCATAGATCGATGCCAATGCCATGTCCAAGAC
* **
6920226 ACGGTCTTACATGGGATTGTAGATCGATGCCAA-GCCATGTCCAAGAC
1 ATGGTCTTACATGGGATCATAGATCGATGCCAATGCCATGTCCAAGAC
6920273 ATGGTCTTACATGGGATCATAGATCGATGCCAATGCCATGTCCAAGAC
1 ATGGTCTTACATGGGATCATAGATCGATGCCAATGCCATGTCCAAGAC
* * * *
6920321 ATGGTCTTATATGGGATCACATATCGATGCCAAT---A-G-CCCAG-C
1 ATGGTCTTACATGGGATCATAGATCGATGCCAATGCCATGTCCAAGAC
* ** * * *
6920363 TATGGCCTTACATGAAAGT-A-AGTATCGATGCCAAAGCCATGTCCCAGGC
1 -ATGGTCTTACATGGGA-TCATAG-ATCGATGCCAATGCCATGTCCAAGAC
6920412 ATGGTCTTACATGGGATC
1 ATGGTCTTACATGGGATC
6920430 GCATATAACC
Statistics
Matches: 170, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
42 2 0.01
43 28 0.16
44 2 0.01
45 1 0.01
46 1 0.01
47 45 0.26
48 90 0.53
49 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCATAGATCGATGCCAATGCCATGTCCAAGAC
Found at i:6920347 original size:95 final size:95
Alignment explanation
Indices: 6920178--6920353 Score: 262
Period size: 95 Copynumber: 1.9 Consensus size: 95
6920168 TATCTCGGAT
* * *
6920178 ATGGTCTTACATGGGATCACATATCGGTGCCAATGCCATGTCCCAGACACGGTCTTACATGGGAT
1 ATGGTCTTACATGGGATCACAGATCGATGCCAATGCCATGTCCAAGACACGGTCTTACATGGGAT
***
6920243 TGTAGATCGATGCCAAGCCATGTCCAAGAC
66 CACAGATCGATGCCAAGCCATGTCCAAGAC
* * *
6920273 ATGGTCTTACATGGGATCATAGATCGATGCCAATGCCATGTCCAAGACATGGTCTTATATGGGAT
1 ATGGTCTTACATGGGATCACAGATCGATGCCAATGCCATGTCCAAGACACGGTCTTACATGGGAT
*
6920338 CACATATCGATGCCAA
66 CACAGATCGATGCCAA
6920354 TAGCCCAGCT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
95 71 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (95 bp):
ATGGTCTTACATGGGATCACAGATCGATGCCAATGCCATGTCCAAGACACGGTCTTACATGGGAT
CACAGATCGATGCCAAGCCATGTCCAAGAC
Found at i:6921789 original size:34 final size:36
Alignment explanation
Indices: 6921746--6921817 Score: 112
Period size: 34 Copynumber: 2.1 Consensus size: 36
6921736 ATAAAAACTA
*
6921746 AACCCTAATTTAATTAATTT-TAACCCTA-AACCCT
1 AACCCTAATTTAATTAATTTAAAACCCTAGAACCCT
*
6921780 AACCCTAATTTAATTTATTTAAAACCCTAGAACCCT
1 AACCCTAATTTAATTAATTTAAAACCCTAGAACCCT
6921816 AA
1 AA
6921818 TTTACTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 19 0.56
35 7 0.21
36 8 0.24
ACGTcount: A:0.40, C:0.25, G:0.01, T:0.33
Consensus pattern (36 bp):
AACCCTAATTTAATTAATTTAAAACCCTAGAACCCT
Found at i:6921814 original size:30 final size:29
Alignment explanation
Indices: 6921780--6922010 Score: 107
Period size: 30 Copynumber: 7.7 Consensus size: 29
6921770 CCTAAACCCT
*
6921780 AACCCTAATTTAATTTATTTAAAACCCTA
1 AACCCTAATTTAATTTATTTAAAACCTTA
* *
6921809 GAACCCTAATTTACTTAATCTATTTAAAAACCATA
1 -AACCCTAA--T--TTAATTTATTT-AAAACCTTA
* * ** ** **
6921844 AGCCCTAATTTGATAAATACAAATATTTTA
1 AACCCTAATTTAATTTATTTAAA-ACCTTA
*
6921874 AACCCTAAGTTAATTTATTTAAAACCTTA
1 AACCCTAATTTAATTTATTTAAAACCTTA
* **
6921903 GAACCCTAATTTAATTAATTTTAACCAAAAATTATA
1 -AACCCTAATTTAATTTA-TTT----AAAACCT-TA
*
6921939 AACCCTAATTTCATTTA-TT------TTA
1 AACCCTAATTTAATTTATTTAAAACCTTA
* *
6921961 AACCCTAACTTAATTTATTTAAAACCATA
1 AACCCTAATTTAATTTATTTAAAACCTTA
*
6921990 GAACCCTAATTTAATTAATTT
1 -AACCCTAATTTAATTTATTT
6922011 TAACGAAAAA
Statistics
Matches: 149, Mismatches: 31, Indels: 42
0.67 0.14 0.19
Matches are distributed among these distances:
22 17 0.11
23 3 0.02
29 9 0.06
30 66 0.44
31 3 0.02
32 2 0.01
33 2 0.01
34 17 0.11
35 28 0.19
36 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (29 bp):
AACCCTAATTTAATTTATTTAAAACCTTA
Found at i:6921827 original size:34 final size:34
Alignment explanation
Indices: 6921789--6921854 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
6921779 TAACCCTAAT
* *
6921789 TTAATTTATTT-AAAACCCTAGAACCCTAATTTAC
1 TTAATCTATTTAAAAACCATA-AACCCTAATTTAC
*
6921823 TTAATCTATTTAAAAACCATAAGCCCTAATTT
1 TTAATCTATTTAAAAACCATAAACCCTAATTT
6921855 GATAAATACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 20 0.71
35 8 0.29
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.38
Consensus pattern (34 bp):
TTAATCTATTTAAAAACCATAAACCCTAATTTAC
Found at i:6921962 original size:22 final size:22
Alignment explanation
Indices: 6921937--6921986 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
6921927 CCAAAAATTA
* *
6921937 TAAACCCTAATTTCATTTATTT
1 TAAACCCTAACTTAATTTATTT
6921959 TAAACCCTAACTTAATTTATTT
1 TAAACCCTAACTTAATTTATTT
*
6921981 AAAACC
1 TAAACC
6921987 ATAGAACCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAACCCTAACTTAATTTATTT
Found at i:6921965 original size:87 final size:87
Alignment explanation
Indices: 6921867--6922036 Score: 295
Period size: 87 Copynumber: 2.0 Consensus size: 87
6921857 TAAATACAAA
* *
6921867 TATTTTAAACCCTAAGTTAATTTATTTAAAACCTTAGAACCCTAATTTAATTAATTTTAACCAAA
1 TATTTTAAACCCTAACTTAATTTATTTAAAACCATAGAACCCTAATTTAATTAATTTTAACCAAA
*
6921932 AATTATAAACCCTAATTTCATT
66 AAATATAAACCCTAATTTCATT
*
6921954 TATTTTAAACCCTAACTTAATTTATTTAAAACCATAGAACCCTAATTTAATTAATTTTAACGAAA
1 TATTTTAAACCCTAACTTAATTTATTTAAAACCATAGAACCCTAATTTAATTAATTTTAACCAAA
*
6922019 AAATATAAATCCTAATTT
66 AAATATAAACCCTAATTT
6922037 AATAAACCCC
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 78 1.00
ACGTcount: A:0.43, C:0.15, G:0.02, T:0.39
Consensus pattern (87 bp):
TATTTTAAACCCTAACTTAATTTATTTAAAACCATAGAACCCTAATTTAATTAATTTTAACCAAA
AAATATAAACCCTAATTTCATT
Found at i:6922061 original size:87 final size:87
Alignment explanation
Indices: 6921873--6922073 Score: 267
Period size: 87 Copynumber: 2.3 Consensus size: 87
6921863 CAAATATTTT
* * *
6921873 AAACCCTAAGTTAATTTATTTAAAACCTTAGAACCCTAATTTAATTAATTTTAACCAAAAATTAT
1 AAACCCTAACTTAATTTATTTAAAACCATAGAACCCTAATTTAATTAATTTTAACCAAAAAATAT
* ** ****
6921938 AAACCCTAATTTCATTTATTTT
66 AAACCCTAATTTAATAAACCCC
*
6921960 AAACCCTAACTTAATTTATTTAAAACCATAGAACCCTAATTTAATTAATTTTAACGAAAAAATAT
1 AAACCCTAACTTAATTTATTTAAAACCATAGAACCCTAATTTAATTAATTTTAACCAAAAAATAT
*
6922025 AAATCCTAATTTAATAAACCCC
66 AAACCCTAATTTAATAAACCCC
* * *
6922047 AAACACTAATTTAATTTATTTTAAACC
1 AAACCCTAACTTAATTTATTTAAAACC
6922074 CTAACTTATT
Statistics
Matches: 99, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
87 99 1.00
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.37
Consensus pattern (87 bp):
AAACCCTAACTTAATTTATTTAAAACCATAGAACCCTAATTTAATTAATTTTAACCAAAAAATAT
AAACCCTAATTTAATAAACCCC
Found at i:6922114 original size:22 final size:21
Alignment explanation
Indices: 6922047--6922114 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
6922037 AATAAACCCC
* *
6922047 AAACACTAATTTAATTTATTTT
1 AAACCCTAATTT-ATTTATTTA
* *
6922069 AAACCCTAACTTATTTTTTTA
1 AAACCCTAATTTATTTATTTA
*
6922090 AAACCCTAATTTACTCTATTTA
1 AAACCCTAATTTA-TTTATTTA
6922112 AAA
1 AAA
6922115 AACATAAACC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
21 19 0.50
22 19 0.50
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (21 bp):
AAACCCTAATTTATTTATTTA
Found at i:6922145 original size:22 final size:22
Alignment explanation
Indices: 6922107--6922156 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
6922097 AATTTACTCT
6922107 ATTTAA-AAAACATAAACCCGA
1 ATTTAATAAAACATAAACCCGA
* *
6922128 ATTTAATAAACCATAAACCCTA
1 ATTTAATAAAACATAAACCCGA
6922150 ATTTAAT
1 ATTTAAT
6922157 TTATTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.52, C:0.18, G:0.02, T:0.28
Consensus pattern (22 bp):
ATTTAATAAAACATAAACCCGA
Found at i:6922187 original size:21 final size:22
Alignment explanation
Indices: 6922141--6922188 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
6922131 TAATAAACCA
* * *
6922141 TAAACCCTAATTTAATTTATTT
1 TAAACACTAACTTAATCTATTT
6922163 TAAACACTAACTTAATCTA-TT
1 TAAACACTAACTTAATCTATTT
6922184 TAAAC
1 TAAAC
6922189 TCCTAGCACC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAACACTAACTTAATCTATTT
Found at i:6922259 original size:24 final size:24
Alignment explanation
Indices: 6922227--6922293 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 24
6922217 TTAAAACCAT
*
6922227 AAACACTAAGCCCTAATTTATTT-A
1 AAACCCTAA-CCCTAATTTATTTAA
*
6922251 AAACCCTAA-CTTAATTTATTTAA
1 AAACCCTAACCCTAATTTATTTAA
*
6922274 AAACCATTAACCCTAATTTA
1 AAACC-CTAACCCTAATTTA
6922294 AATAATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
22 11 0.31
23 6 0.17
24 11 0.31
25 8 0.22
ACGTcount: A:0.43, C:0.21, G:0.01, T:0.34
Consensus pattern (24 bp):
AAACCCTAACCCTAATTTATTTAA
Found at i:6922417 original size:34 final size:35
Alignment explanation
Indices: 6922337--6922410 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 35
6922327 TTAGTTTTAA
*
6922337 AAACAACTAAAACCCTAACTTGTTTTAACAAAAACCT
1 AAAC-ACT-AAACCCTAACTTATTTTAACAAAAACCT
* * * *
6922374 AAATACTAAACCTTAACTTATTTTACCAAAACCCT
1 AAACACTAAACCCTAACTTATTTTAACAAAAACCT
6922409 AA
1 AA
6922411 CCCTAAAAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
35 26 0.81
36 3 0.09
37 3 0.09
ACGTcount: A:0.47, C:0.24, G:0.01, T:0.27
Consensus pattern (35 bp):
AAACACTAAACCCTAACTTATTTTAACAAAAACCT
Found at i:6922786 original size:16 final size:15
Alignment explanation
Indices: 6922765--6922794 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
6922755 CGTATAAACT
6922765 TATAAAAAATATATAG
1 TATAAAAAAT-TATAG
6922781 TATAAAAAATTATA
1 TATAAAAAATTATA
6922795 AGCATATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
TATAAAAAATTATAG
Found at i:6922822 original size:21 final size:21
Alignment explanation
Indices: 6922781--6922822 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6922771 AAATATATAG
**
6922781 TATAAAAAATTATAAGCATAT
1 TATAAAAAATTATAAAAATAT
*
6922802 TATAAAAATTTATAAAAATAT
1 TATAAAAAATTATAAAAATAT
6922823 ATTTTTATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
TATAAAAAATTATAAAAATAT
Found at i:6932786 original size:28 final size:29
Alignment explanation
Indices: 6932731--6932795 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
6932721 GTTTTGCATG
*
6932731 TGTCTTAGCTTAAATACATGTTACTAATA
1 TGTCCTAGCTTAAATACATGTTACTAATA
* *
6932760 TGTCCTAGCTTAAA-ACATGCTT-TTAATG
1 TGTCCTAGCTTAAATACATG-TTACTAATA
6932788 TGTCCTAG
1 TGTCCTAG
6932796 ATGCTGCCGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 17 0.53
29 15 0.47
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (29 bp):
TGTCCTAGCTTAAATACATGTTACTAATA
Found at i:6942171 original size:46 final size:46
Alignment explanation
Indices: 6942104--6942272 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
6942094 AACCCGCCCC
**
6942104 TAAGTGAACTCGGACTCAACTCAACGAACTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* * *
6942150 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
6942198 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
6942243 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
6942273 TGGATGCTCA
Statistics
Matches: 100, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 55 0.55
47 27 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:6942215 original size:93 final size:93
Alignment explanation
Indices: 6942109--6942279 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
6942099 GCCCCTAAGT
* *
6942109 GAACTCGGACTCAACTCAACGAACTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
6942174 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
**
6942202 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
6942267 CGAGTTTGGATGC
66 CGAGTTCGGATGC
6942280 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:6944565 original size:18 final size:18
Alignment explanation
Indices: 6944542--6944576 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6944532 CCCTATTCTG
6944542 AATTTGGA-AAATCATAAA
1 AATTTGGAGAAAT-ATAAA
6944560 AATTTGGAGAAATATAA
1 AATTTGGAGAAATATAA
6944577 TTAGAGGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.54, C:0.03, G:0.14, T:0.29
Consensus pattern (18 bp):
AATTTGGAGAAATATAAA
Found at i:6947078 original size:19 final size:20
Alignment explanation
Indices: 6947054--6947091 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
6947044 GGTACCACCA
6947054 AAACAT-ATATCAT-ATCTTC
1 AAACATCAT-TCATCATCTTC
6947073 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
6947092 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTC
Found at i:6954254 original size:19 final size:20
Alignment explanation
Indices: 6954230--6954267 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
6954220 GGTACCACCA
6954230 AAACAT-ATATCAT-ATCTTC
1 AAACATCAT-TCATCATCTTC
6954249 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
6954268 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTC
Found at i:6954656 original size:46 final size:46
Alignment explanation
Indices: 6954492--6954661 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
6954482 AACCCGCCCC
** * * *
6954492 TAAGTGAACTTAGACTCAACTCAACGAGCTT-GGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCAGCCATTTGCATCCA
* * * *
6954538 TAAATGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GCC-ATTTGCATCCA
* *
6954586 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGCCATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGCCATTTGCATCCA
6954631 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
6954662 GGATGCTCAA
Statistics
Matches: 100, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
44 4 0.04
45 5 0.05
46 50 0.50
47 25 0.25
48 2 0.02
49 3 0.03
50 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGCCATTTGCATCCA
Found at i:6962307 original size:33 final size:33
Alignment explanation
Indices: 6962265--6962330 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
6962255 AGTGAATAAC
* *
6962265 ACAGTCTGGG-CCTAAGCCCTATTCAGTATCAGT
1 ACAGTCTGGGCCCT-AGCCCTATACAGTAGCAGT
6962298 ACAGTCTGGGCCCTAGCCCTATACAGTAGCAGT
1 ACAGTCTGGGCCCTAGCCCTATACAGTAGCAGT
6962331 GTGGGCCTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.90
34 3 0.10
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (33 bp):
ACAGTCTGGGCCCTAGCCCTATACAGTAGCAGT
Found at i:6962344 original size:28 final size:27
Alignment explanation
Indices: 6962294--6962353 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
6962284 TATTCAGTAT
*
6962294 CAGTACAGTCTGGGCCCTAGCCCTATA
1 CAGTACAGTCTGGGCCCTAGCCCAATA
* *
6962321 CAGTAGCAGTGTGGG-CCTAGGCCCAATG
1 CAGTA-CAGTCTGGGCCCTA-GCCCAATA
6962349 CAGTA
1 CAGTA
6962354 ACAATACAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 9 0.32
28 19 0.68
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (27 bp):
CAGTACAGTCTGGGCCCTAGCCCAATA
Found at i:6962558 original size:27 final size:27
Alignment explanation
Indices: 6962520--6962572 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
6962510 GTTACCAGAA
6962520 CAGTAAGTGTGGCAAAGCCACAAGTAT
1 CAGTAAGTGTGGCAAAGCCACAAGTAT
* * *
6962547 CAGTAATTGTGGCATAGCCACCAGTA
1 CAGTAAGTGTGGCAAAGCCACAAGTA
6962573 CAGAACTTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGTAAGTGTGGCAAAGCCACAAGTAT
Found at i:6962745 original size:27 final size:27
Alignment explanation
Indices: 6962715--6962934 Score: 305
Period size: 27 Copynumber: 8.1 Consensus size: 27
6962705 GCATAATCGA
* * *
6962715 CATTTTACCATATAGGGGTATTATGGT
1 CATTTTACCCTATAGGGGCATTACGGT
* * *
6962742 CATTTTACACTACAAAGGGCATTACGGT
1 CATTTTACCCTA-TAGGGGCATTACGGT
6962770 CATTTTACCCTATAGGGGCATTACGGT
1 CATTTTACCCTATAGGGGCATTACGGT
* *
6962797 CATTTTACCCTACAGGGGCATTACTGT
1 CATTTTACCCTATAGGGGCATTACGGT
* * *
6962824 CATTTTACCCTACAAGGGCATTAAGGT
1 CATTTTACCCTATAGGGGCATTACGGT
* *
6962851 CATTTTACCCTACAGGGGCATTACAGT
1 CATTTTACCCTATAGGGGCATTACGGT
*
6962878 CATTTTACCCTATAGGGGCATTACGGA
1 CATTTTACCCTATAGGGGCATTACGGT
6962905 CATTTTACCCTATAGGGGCATTACGGT
1 CATTTTACCCTATAGGGGCATTACGGT
6962932 CAT
1 CAT
6962935 ATAACAACCT
Statistics
Matches: 171, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 149 0.87
28 22 0.13
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (27 bp):
CATTTTACCCTATAGGGGCATTACGGT
Found at i:6964891 original size:27 final size:27
Alignment explanation
Indices: 6964861--6964938 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
6964851 CATTTTACCA
* * *
6964861 TACAGGGGTATGTCGGTCATTTTATAC
1 TACAAGGGTATGTCAGTAATTTTATAC
*
6964888 TACAAGGGTATTTCAGTAATTTTATAC
1 TACAAGGGTATGTCAGTAATTTTATAC
* * *
6964915 TACAAGGGTGTTTCAATAATTTTA
1 TACAAGGGTATGTCAGTAATTTTA
6964939 CAAATCGAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (27 bp):
TACAAGGGTATGTCAGTAATTTTATAC
Found at i:6964949 original size:27 final size:27
Alignment explanation
Indices: 6964931--6965303 Score: 398
Period size: 27 Copynumber: 13.9 Consensus size: 27
6964921 GGTGTTTCAA
* **
6964931 TAATTTTACAAATCGAGGGTGTTTCAA
1 TAATTTTACAAATCGAGGGTATTTCGG
*
6964958 TAATTTTACAAATCGAGGGTATTTCGA
1 TAATTTTACAAATCGAGGGTATTTCGG
* *
6964985 TAATTTTACAAATCGAGGGTATTTTGA
1 TAATTTTACAAATCGAGGGTATTTCGG
* *
6965012 TAATTTTAGAAATCGAGGGTGTTTCGG
1 TAATTTTACAAATCGAGGGTATTTCGG
* * *
6965039 TAATTTTAAAAATCAAGGGTGTTTCGG
1 TAATTTTACAAATCGAGGGTATTTCGG
* * *
6965066 TAATTTCACAAATAGAGGGTATTTCTG
1 TAATTTTACAAATCGAGGGTATTTCGG
* *
6965093 TAGTTTTACAAATCGAGGGTACTTT-AG
1 TAATTTTACAAATCGAGGGTA-TTTCGG
* * **
6965120 TAATTTCAC-AATCGTGGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTCGG
6965146 TAATTTTACAAATC-AGGGGTATTTCGG
1 TAATTTTACAAATCGA-GGGTATTTCGG
* * * *
6965173 TAATTTCACAAATTGGGGGTATTTC-A
1 TAATTTTACAAATCGAGGGTATTTCGG
* * **
6965199 TAATTTTAAAAATTGAGGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTCGG
*
6965226 TAATTTCAC-AATCGAGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTCGG
*
6965252 TAATTTTTCAAATCG-GGGATATTTCGG
1 TAATTTTACAAATCGAGGG-TATTTCGG
*
6965279 TAATTTTACAAATCAAGGGTATTTC
1 TAATTTTACAAATCGAGGGTATTTC
6965304 AGTAGTTTCT
Statistics
Matches: 293, Mismatches: 44, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
25 3 0.01
26 65 0.22
27 219 0.75
28 6 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCGG
Found at i:6964989 original size:81 final size:81
Alignment explanation
Indices: 6964892--6965307 Score: 363
Period size: 81 Copynumber: 5.2 Consensus size: 81
6964882 TTATACTACA
* * * ** *
6964892 AGGGTATTTC-AGTAATTTTATACTACAAGGGTGTTTCAATAATTTTACAAATCGAGGGTGTTTC
1 AGGGTATTTCGAGTAATTTTACA-TACGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTC
*
6964956 AATAATTTTACAAATCG
65 AGTAATTTTACAAATCG
* * * * *
6964973 AGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTTGATAATTTTAGAAATCGAGGGTGTTTC
1 AGGGTATTTCGAGTAATTTTACATA-CGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTC
* * *
6965037 GGTAATTTTAAAAATCA
65 AGTAATTTTACAAATCG
* * * *
6965054 AGGGTGTTTCG-GTAATTTCACAAATA-GAGGGTATTTCTGTAGTTTTACAAATCGAGGGTACTT
1 AGGGTATTTCGAGTAATTTTAC--ATACGAGGGTATTTCGGTAATTTTACAAATCGAGGGTA-TT
*
6965117 T-AGTAATTTCAC-AATCG
63 TCAGTAATTTTACAAATCG
* * * * * *
6965134 TGGGTATTT-TAGTAATTTTACAAATC-AGGGGTATTTCGGTAATTTCACAAATTGGGGGTATTT
1 AGGGTATTTCGAGTAATTTTACATA-CGA-GGGTATTTCGGTAATTTTACAAATCGAGGGTATTT
* *
6965197 CA-TAATTTTAAAAATTG
64 CAGTAATTTTACAAATCG
* * *
6965214 AGGGTATTT-TAGTAATTTCACA-ATCGAGGGTATTTCGGTAATTTTTCAAATCG-GGGATATTT
1 AGGGTATTTCGAGTAATTTTACATA-CGAGGGTATTTCGGTAATTTTACAAATCGAGGG-TATTT
* *
6965276 CGGTAATTTTACAAATCA
64 CAGTAATTTTACAAATCG
6965294 AGGGTATTTC-AGTA
1 AGGGTATTTCGAGTA
6965308 GTTTCTCTGT
Statistics
Matches: 273, Mismatches: 46, Indels: 33
0.78 0.13 0.09
Matches are distributed among these distances:
78 5 0.02
79 43 0.16
80 99 0.36
81 120 0.44
82 4 0.01
83 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.38
Consensus pattern (81 bp):
AGGGTATTTCGAGTAATTTTACATACGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
GTAATTTTACAAATCG
Found at i:6965672 original size:28 final size:28
Alignment explanation
Indices: 6965628--6965775 Score: 215
Period size: 28 Copynumber: 5.3 Consensus size: 28
6965618 TGGCCCCTTT
* *
6965628 AGGCCCAATCTCGTTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
6965656 TGGCCCAATCACATTCATATGACCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
6965684 AGGCCCAATCACATTCATATGGCGCATT
1 AGGCCCAATCACATTCATATGGCCCATC
*
6965712 AGGCCCGATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
6965740 AAGCCCAATCACATTCATATGGCCTATC
1 AGGCCCAATCACATTCATATGGCCCATC
6965768 AGGCCCAA
1 AGGCCCAA
6965776 CTACTTCCCA
Statistics
Matches: 105, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 105 1.00
ACGTcount: A:0.28, C:0.34, G:0.16, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:6971941 original size:34 final size:33
Alignment explanation
Indices: 6971898--6971967 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 33
6971888 TACATCAGCT
6971898 CCTGCTGAAGGAGCGATGCCGACTGAAAATCGA
1 CCTGCTGAAGGAGCGATGCCGACTGAAAATCGA
6971931 NCCTGCTGAAGGAGCGATGCCGACTGAAAATCGA
1 -CCTGCTGAAGGAGCGATGCCGACTGAAAATCGA
6971965 CCT
1 CCT
6971968 CCTACTGTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 3 0.08
34 33 0.92
ACGTcount: A:0.29, C:0.26, G:0.29, T:0.16
Consensus pattern (33 bp):
CCTGCTGAAGGAGCGATGCCGACTGAAAATCGA
Found at i:6978742 original size:27 final size:27
Alignment explanation
Indices: 6978684--6978794 Score: 147
Period size: 27 Copynumber: 4.1 Consensus size: 27
6978674 AGCATGGCTG
* *
6978684 CCAGAACAGATAA-TGTGACAGTGTCA
1 CCAGAACAGATAATTGTGGCAGTGCCA
6978710 CCAGAACAGATAATTGTGGCAGTGCCA
1 CCAGAACAGATAATTGTGGCAGTGCCA
*
6978737 CAAGAACAGAT-ATATGTGGCAGTGCCA
1 CCAGAACAGATAAT-TGTGGCAGTGCCA
*
6978764 CCAGATCAGATAATTGTGGCA-TAGCCA
1 CCAGAACAGATAATTGTGGCAGT-GCCA
6978791 CCAG
1 CCAG
6978795 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
26 16 0.21
27 58 0.76
28 2 0.03
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGTGCCA
Found at i:6980265 original size:24 final size:24
Alignment explanation
Indices: 6980227--6980327 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
6980217 CCAACACCGT
*
6980227 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
6980251 TCTCCCTTATTAGCTCCTACATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
6980275 TCTCCCTTATGAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
6980299 TCTCCCTTATCAGCTCCTAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
6980323 TCTCC
1 TCTCC
6980328 TGACAGCCTT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.20, C:0.41, G:0.05, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:6986637 original size:26 final size:26
Alignment explanation
Indices: 6986607--6986706 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 26
6986597 GCGTAGCTGC
* *
6986607 CAGAACAGATAATGTGACAGTGTCAT
1 CAGAACAGATAATGTGGCAGTGCCAT
* *
6986633 TAGAACAGATAATTGTGGCAGAGCCAT
1 CAGAACAGATAA-TGTGGCAGTGCCAT
* *
6986660 CAGAATAGATATATGTGGCAGTGCCAC
1 CAGAACAGATA-ATGTGGCAGTGCCAT
*
6986687 CAGATCAGATAATTGTGGCA
1 CAGAACAGATAA-TGTGGCA
6986707 TAGCCACCAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
26 12 0.20
27 48 0.79
28 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (26 bp):
CAGAACAGATAATGTGGCAGTGCCAT
Found at i:6986696 original size:54 final size:53
Alignment explanation
Indices: 6986607--6986712 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 53
6986597 GCGTAGCTGC
* **
6986607 CAGAACAGATAATGTGACAGTGTCATTAGAACAGATAATTGTGGCAGAGCCAT
1 CAGAACAGATAATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCAT
* * * *
6986660 CAGAATAGATATATGTGGCAGTGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CAGAACAGATA-ATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCA
6986713 CCAGGAAGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 10 0.22
54 35 0.78
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
CAGAACAGATAATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCAT
Found at i:6986713 original size:27 final size:28
Alignment explanation
Indices: 6986634--6986716 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 28
6986624 CAGTGTCATT
* *
6986634 AGAA-CAGATAATTGTGGCAGAGCCATC
1 AGAATCAGATAATTGTGGCATAGCCACC
6986661 AGAAT-AGAT-ATATGTGGCAGT-GCCACC
1 AGAATCAGATAAT-TGTGGCA-TAGCCACC
6986688 AG-ATCAGATAATTGTGGCATAGCCACC
1 AGAATCAGATAATTGTGGCATAGCCACC
6986715 AG
1 AG
6986717 GAAGCTTCCT
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
26 5 0.10
27 41 0.85
28 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (28 bp):
AGAATCAGATAATTGTGGCATAGCCACC
Found at i:6988184 original size:24 final size:24
Alignment explanation
Indices: 6988149--6988249 Score: 139
Period size: 24 Copynumber: 4.2 Consensus size: 24
6988139 TGAACTCCGT
* **
6988149 TCTCCCTAATCAGCTCCTAAATGA
1 TCTCCCTTATCAGCTCCTAAATCC
* *
6988173 TCTCCCTTATCAGCTTCTACATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
6988197 TCTTCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
6988221 TCTCCCTTATCAGCTCCTAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
6988245 TCTCC
1 TCTCC
6988250 TGACAGCCTT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 67 1.00
ACGTcount: A:0.21, C:0.39, G:0.05, T:0.36
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:6992874 original size:44 final size:43
Alignment explanation
Indices: 6992824--6992974 Score: 148
Period size: 42 Copynumber: 3.5 Consensus size: 43
6992814 GTTATCATGG
6992824 AAGACCATGTCTGGGACGTTGGCATCGATTTGTGATTTACGTGT
1 AAGACCATGTCTGGGACGTTGGCATCGATTT-TGATTTACGTGT
* * *
6992868 AAGACCATGTCTGGGACATTGGCATCG-TATATGATTT-CGTTT
1 AAGACCATGTCTGGGACGTTGGCATCGAT-TTTGATTTACGTGT
* * * * *
6992910 AAGACCCTGTCTAGGACAG-TGGCTTCGATATTT-AATTACATGT
1 AAGACCATGTCTGGGAC-GTTGGCATCGAT-TTTGATTTACGTGT
* *
6992953 AAGACCACGTCTGAGACGTTGG
1 AAGACCATGTCTGGGACGTTGG
6992975 TGTTGTACTA
Statistics
Matches: 87, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
42 30 0.34
43 30 0.34
44 27 0.31
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
AAGACCATGTCTGGGACGTTGGCATCGATTTTGATTTACGTGT
Found at i:6995091 original size:39 final size:40
Alignment explanation
Indices: 6994985--6995167 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
6994975 GAATGATGTT
* *
6994985 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TC
*
6995025 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTC
* * *
6995065 CGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
* *
6995104 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TC
*
6995144 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
6995168 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
Found at i:6995189 original size:79 final size:78
Alignment explanation
Indices: 6995017--6995190 Score: 201
Period size: 79 Copynumber: 2.2 Consensus size: 78
6995007 GTGCTAAGTG
* * *
6995017 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCTGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
**
6995082 CATTGGTGCGAGTT
65 CATTGGAACGAGTT
* *
6995096 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGA
1 ACTATATCC-GGTTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGA
*
6995159 AGGCATTTGAACGAG-T
62 AGGCATTGGAACGAGTT
6995175 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
6995191 ATTTCGATGG
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
78 3 0.04
79 53 0.65
80 25 0.31
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGC
ATTGGAACGAGTT
Found at i:7012754 original size:18 final size:18
Alignment explanation
Indices: 7012731--7012769 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
7012721 GTGGTAAAAC
7012731 AATATAAAAAGTTCACCA
1 AATATAAAAAGTTCACCA
7012749 AATATAAAAAGTTCACCA
1 AATATAAAAAGTTCACCA
7012767 AAT
1 AAT
7012770 TAATTTTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.23
Consensus pattern (18 bp):
AATATAAAAAGTTCACCA
Found at i:7016727 original size:40 final size:40
Alignment explanation
Indices: 7016667--7016746 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
7016657 TATGAATTGG
*
7016667 AAACTTATTTAGTACTATTCTATTTTTCTTTTTCTTTCTC
1 AAACTTATTTAGTACCATTCTATTTTTCTTTTTCTTTCTC
7016707 AAACTTATTTAGTACCATTCTATTTTTCTTTTTCTTTCTC
1 AAACTTATTTAGTACCATTCTATTTTTCTTTTTCTTTCTC
7016747 TGCCGATGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.20, C:0.19, G:0.03, T:0.59
Consensus pattern (40 bp):
AAACTTATTTAGTACCATTCTATTTTTCTTTTTCTTTCTC
Found at i:7017885 original size:13 final size:13
Alignment explanation
Indices: 7017867--7017892 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7017857 TTCTTGCTTG
7017867 TCACAATGAAATC
1 TCACAATGAAATC
7017880 TCACAATGAAATC
1 TCACAATGAAATC
7017893 CAGATCCTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (13 bp):
TCACAATGAAATC
Found at i:7026509 original size:40 final size:38
Alignment explanation
Indices: 7026417--7026528 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 38
7026407 TATTACCACA
* **
7026417 AGCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACT
1 AGCACAATTGCCTTCGGGTCTTAGCCC-GG-ATAAAAACT
*
7026457 CGCACGAA-TGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAA--ACT
*
7026497 AGCACAATTGCCTTCGGGACTTAGCCCGGATA
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATA
7026529 TCATTCAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
38 4 0.06
39 4 0.06
40 52 0.84
41 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (38 bp):
AGCACAATTGCCTTCGGGTCTTAGCCCGGATAAAAACT
Found at i:7036491 original size:17 final size:16
Alignment explanation
Indices: 7036469--7036549 Score: 58
Period size: 16 Copynumber: 4.8 Consensus size: 16
7036459 AATCAGTGAC
7036469 TTTATTTAGTTTTATA-T
1 TTTATTTA-TTTT-TACT
7036486 TTTATTTATTTTTACT
1 TTTATTTATTTTTACT
* *
7036502 TTTATTTGTACTTTTATT
1 TTTA-TT-TATTTTTACT
* *
7036520 TTTATTGT-TATTTATT
1 TTTATT-TATTTTTACT
7036536 TTTATTTTATTTTT
1 TTTA-TTTATTTTT
7036550 TAAAACTTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
15 2 0.04
16 20 0.37
17 20 0.37
18 12 0.22
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.75
Consensus pattern (16 bp):
TTTATTTATTTTTACT
Found at i:7036499 original size:6 final size:6
Alignment explanation
Indices: 7036473--7036549 Score: 65
Period size: 6 Copynumber: 13.5 Consensus size: 6
7036463 AGTGACTTTA
* * * *
7036473 TTTAGT TTTATAT TTTA-- TTTATT TTTACT TTTATT TGTACT TTTATT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
7036520 TTTATT GTTA-- TTTATT TTTA-T TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTT
7036550 TAAAACTTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
4 7 0.12
5 5 0.09
6 39 0.70
7 5 0.09
ACGTcount: A:0.18, C:0.03, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:7036550 original size:28 final size:28
Alignment explanation
Indices: 7036470--7036551 Score: 80
Period size: 28 Copynumber: 2.9 Consensus size: 28
7036460 ATCAGTGACT
7036470 TTATTTAGTTTTATATTTTATTTATTT-TTA
1 TTATTTA-TTTT-TATTTTATTT-TTTATTA
* * *
7036500 CT-TTTATTTGTACTTTTA-TTTTTATTG
1 TTATTTATTTTTA-TTTTATTTTTTATTA
7036527 TTATTTATTTTTATTTTATTTTTTA
1 TTATTTATTTTTATTTTATTTTTTA
7036552 AAACTTATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
26 3 0.07
27 12 0.28
28 23 0.53
29 4 0.09
30 1 0.02
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.74
Consensus pattern (28 bp):
TTATTTATTTTTATTTTATTTTTTATTA
Found at i:7042115 original size:46 final size:46
Alignment explanation
Indices: 7042062--7042237 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
7042052 TATTTGGGCA
*
7042062 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGATCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
7042108 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
7042153 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
7042201 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7042238 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:7042217 original size:93 final size:93
Alignment explanation
Indices: 7042058--7042230 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
7042048 GGGATATTTG
* * **
7042058 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGATCGTCCGAACTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
7042123 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
7042151 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
7042216 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
7042231 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:7047862 original size:37 final size:38
Alignment explanation
Indices: 7047799--7047904 Score: 139
Period size: 39 Copynumber: 2.9 Consensus size: 38
7047789 GACGGTGTTT
*
7047799 CAAAATATTT--AATATA-TTAGAAACGAGATT-AAAA
1 CAAAATATTTACAATAAATTTAGAAACGAGATTAAAAA
7047833 CAAAATATTTACAATAAATTTAGAAACGAGATTAAAAA
1 CAAAATATTTACAATAAATTTAGAAACGAGATTAAAAA
* **
7047871 TAAAATATCAACAAATAAATTTAGAAACGAGATT
1 CAAAATATTTAC-AATAAATTTAGAAACGAGATT
7047905 TTTTACCCAT
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
34 10 0.16
36 5 0.08
37 14 0.22
38 13 0.21
39 21 0.33
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (38 bp):
CAAAATATTTACAATAAATTTAGAAACGAGATTAAAAA
Found at i:7051578 original size:122 final size:120
Alignment explanation
Indices: 7051372--7051645 Score: 431
Period size: 122 Copynumber: 2.3 Consensus size: 120
7051362 TATAACCACA
* ** * *
7051372 AGCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTGCGGGTCTTAGC
*
7051437 CCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACT
66 CCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATA-AAATC-ACT
* * * *
7051494 CGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTGCGGGTCTTAGC
7051559 CCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCACT
66 CCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCACT
*
7051614 AGCACAATTGCCTTCGGGACTTAGCCCGGATA
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATA
7051646 AAATTCAAAT
Statistics
Matches: 138, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
120 31 0.22
121 4 0.03
122 103 0.75
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (120 bp):
AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTGCGGGTCTTAGC
CCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCACT
Found at i:7051649 original size:40 final size:41
Alignment explanation
Indices: 7051373--7051646 Score: 371
Period size: 40 Copynumber: 6.8 Consensus size: 41
7051363 ATAACCACAA
* ** *
7051373 GCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
*
7051413 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
7051453 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA-ATATCAACTC
* *
7051495 GCACAAATGCCTGCGGGTCTTAGCCCGGAT-ATATCAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
* * *
7051535 GCACAAATGCCTGCGGGTCTTAGCCCGGAT-ATATCAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
* *
7051575 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
*
7051615 GCACAATTGCCTTCGGGACTTAGCCCGGATAA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAA
7051647 AATTCAAATG
Statistics
Matches: 215, Mismatches: 13, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
39 2 0.01
40 170 0.79
41 6 0.03
42 37 0.17
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (41 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
Found at i:7060470 original size:23 final size:22
Alignment explanation
Indices: 7060436--7060478 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7060426 TTAAAGAAAA
*
7060436 AAAAAAGAAAAAAAACTCAACC
1 AAAAAAGAAAAAAAAATCAACC
*
7060458 AAAACAGACAAAAAAAATCAA
1 AAAAAAGA-AAAAAAAATCAA
7060479 TATATAGCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.74, C:0.16, G:0.05, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAAAAAATCAACC
Found at i:7072108 original size:93 final size:93
Alignment explanation
Indices: 7072001--7072170 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
7071991 GCCCCTAAGT
* * * *
7072001 GAACTCGGACTCAACTCAACGAGCTCGGGA-GTTTGCGTCCATAAGTGAACTTGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
7072065 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCAGATGCCTAGTTACATCTCAC
*
7072094 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7072159 CGAGTTCAGATG
66 CGAGTTCAGATG
7072171 GTCAACCATC
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 3 0.04
93 67 0.96
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:7072161 original size:46 final size:45
Alignment explanation
Indices: 7071996--7072165 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 45
7071986 AACCCGCCCC
* ** *
7071996 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGAGTTTGCGTCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTGCATCCA
* *
7072042 TAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCATCCA
* *
7072090 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCA
7072135 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
7072166 AGATGGTCAA
Statistics
Matches: 103, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 5 0.05
46 55 0.53
47 28 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
Found at i:7079672 original size:93 final size:93
Alignment explanation
Indices: 7079560--7079730 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
7079550 GCCCCTAAGT
* * **
7079560 GAACTCGGACTCAACTCAACGAGCTCGAGA-GTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAGCTCG-GACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
7079624 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
7079653 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
7079718 CGAGTTCGGATGC
66 CGAGTTCGGATGC
7079731 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:7079726 original size:46 final size:46
Alignment explanation
Indices: 7079555--7079727 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
7079545 AACCCGCCCC
* *
7079555 TAAGTGAACTCGGACTCAACTCAACGAGCTCGAGA-GTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCA
* *
7079601 TAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
7079649 TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
7079694 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
7079728 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 13, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 57 0.55
47 27 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:7081619 original size:12 final size:12
Alignment explanation
Indices: 7081602--7081627 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7081592 TACAGCTCTT
7081602 TCTTTAATTCTC
1 TCTTTAATTCTC
7081614 TCTTTAATTCTC
1 TCTTTAATTCTC
7081626 TC
1 TC
7081628 CTATCTCCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (12 bp):
TCTTTAATTCTC
Found at i:7089879 original size:46 final size:46
Alignment explanation
Indices: 7089812--7089907 Score: 192
Period size: 46 Copynumber: 2.1 Consensus size: 46
7089802 TATATGATTT
7089812 TATAATTTATTAACTAAGGTTAAAAAGGTAAAATAATAATAAGTAA
1 TATAATTTATTAACTAAGGTTAAAAAGGTAAAATAATAATAAGTAA
7089858 TATAATTTATTAACTAAGGTTAAAAAGGTAAAATAATAATAAGTAA
1 TATAATTTATTAACTAAGGTTAAAAAGGTAAAATAATAATAAGTAA
7089904 TATA
1 TATA
7089908 TATGTTATAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.33
Consensus pattern (46 bp):
TATAATTTATTAACTAAGGTTAAAAAGGTAAAATAATAATAAGTAA
Found at i:7095761 original size:24 final size:24
Alignment explanation
Indices: 7095734--7095780 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
7095724 ATCTGACTTA
7095734 GGCTTGTCCCTCCAAATCTTTTTT
1 GGCTTGTCCCTCCAAATCTTTTTT
7095758 GGCTTGTCCCTCCAAATCTTTTT
1 GGCTTGTCCCTCCAAATCTTTTT
7095781 GCCTTTGTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.13, C:0.30, G:0.13, T:0.45
Consensus pattern (24 bp):
GGCTTGTCCCTCCAAATCTTTTTT
Done.