Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 201 of 284
Found at i:67247336 original size:40 final size:40
Alignment explanation
Indices: 67247281--67247361 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
67247271 GGACTCTTTG
67247281 TTGGTTCAAGTAAAGAGTGTTATATTAACAATCAATTAGA
1 TTGGTTCAAGTAAAGAGTGTTATATTAACAATCAATTAGA
67247321 TTGGTTCAAGTAAAGAGTGTTATATTAACAATCAATTAGA
1 TTGGTTCAAGTAAAGAGTGTTATATTAACAATCAATTAGA
67247361 T
1 T
67247362 AGATTCCAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.36
Consensus pattern (40 bp):
TTGGTTCAAGTAAAGAGTGTTATATTAACAATCAATTAGA
Found at i:67256749 original size:41 final size:41
Alignment explanation
Indices: 67256703--67256786 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
67256693 TCAACTTCTC
67256703 AATCATTCTCTAATTGAGAATCAGATAAAAATTGTAGTGAA
1 AATCATTCTCTAATTGAGAATCAGATAAAAATTGTAGTGAA
67256744 AATCATTCTCTAATTGAGAATCAGATAAAAATTGTAGTGAA
1 AATCATTCTCTAATTGAGAATCAGATAAAAATTGTAGTGAA
67256785 AA
1 AA
67256787 AATTGCTAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (41 bp):
AATCATTCTCTAATTGAGAATCAGATAAAAATTGTAGTGAA
Found at i:67262238 original size:3 final size:3
Alignment explanation
Indices: 67262232--67262266 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
67262222 TATTATTATT
67262232 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
67262267 TATTATTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:67262635 original size:32 final size:32
Alignment explanation
Indices: 67262597--67262659 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
67262587 GAGAGGGCTA
*
67262597 CAATTAAAGAAGATAGAAATTTA-AAA-GTTAAT
1 CAATTAAA-AAG-TACAAATTTATAAATGTTAAT
67262629 CAATTAAAAAGTACAAATTTATAAATGTTAA
1 CAATTAAAAAGTACAAATTTATAAATGTTAA
67262660 CAAACCATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 9 0.32
31 6 0.21
32 13 0.46
ACGTcount: A:0.56, C:0.05, G:0.10, T:0.30
Consensus pattern (32 bp):
CAATTAAAAAGTACAAATTTATAAATGTTAAT
Found at i:67266651 original size:33 final size:33
Alignment explanation
Indices: 67266614--67266680 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
67266604 AGTCACGATG
*
67266614 TAGCCTTAGTTAAATTGTAATCTATATTATTAT
1 TAGCCTTAGTTAAATTGTAATCGATATTATTAT
*
67266647 TAGCCTTAGTTCAATTGTAATCGATATTATTAT
1 TAGCCTTAGTTAAATTGTAATCGATATTATTAT
67266680 T
1 T
67266681 CGTGTAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.48
Consensus pattern (33 bp):
TAGCCTTAGTTAAATTGTAATCGATATTATTAT
Found at i:67268284 original size:37 final size:37
Alignment explanation
Indices: 67268196--67268290 Score: 129
Period size: 37 Copynumber: 2.6 Consensus size: 37
67268186 ACTACACAAG
*
67268196 TAATCCAACCGA-AACACGCCAACTGCTCATAAGAGC
1 TAATCCAACCGATAACACGCCAAATGCTCATAAGAGC
* * * *
67268232 TAATCTACCCAATAACACGTCAAATGCTCATAAGAGC
1 TAATCCAACCGATAACACGCCAAATGCTCATAAGAGC
*
67268269 TAATCCAATCGATAACACGCCA
1 TAATCCAACCGATAACACGCCA
67268291 CGGCAGTAAG
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
36 9 0.19
37 39 0.81
ACGTcount: A:0.40, C:0.31, G:0.12, T:0.18
Consensus pattern (37 bp):
TAATCCAACCGATAACACGCCAAATGCTCATAAGAGC
Found at i:67272182 original size:27 final size:27
Alignment explanation
Indices: 67272150--67272216 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
67272140 ATAGTTGAAC
67272150 TATGGCAAAGTGATAAAGTGTACCAAA
1 TATGGCAAAGTGATAAAGTGTACCAAA
*
67272177 TATGGCAAAGTGATAAAGTGTGCCAAA
1 TATGGCAAAGTGATAAAGTGTACCAAA
67272204 TATGGCAAAGTGA
1 TATGGCAAAGTGA
67272217 AATGTGACAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.42, C:0.10, G:0.25, T:0.22
Consensus pattern (27 bp):
TATGGCAAAGTGATAAAGTGTACCAAA
Found at i:67272455 original size:33 final size:33
Alignment explanation
Indices: 67272418--67272488 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
67272408 GTATAAGTGT
67272418 ATGAATGTTTGGTAAGATTTATGTTTTATGCCA
1 ATGAATGTTTGGTAAGATTTATGTTTTATGCCA
67272451 ATGAATGTTTGGTAAGATTTATGTTTTATGCCA
1 ATGAATGTTTGGTAAGATTTATGTTTTATGCCA
67272484 ATGAA
1 ATGAA
67272489 CTTACTAAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.44
Consensus pattern (33 bp):
ATGAATGTTTGGTAAGATTTATGTTTTATGCCA
Found at i:67273637 original size:25 final size:23
Alignment explanation
Indices: 67273608--67273659 Score: 68
Period size: 25 Copynumber: 2.2 Consensus size: 23
67273598 AATTTTTTAA
67273608 TTTTATTAAAAAATATTTATATTAT
1 TTTTATTAAAAAAT-TTTATA-TAT
* *
67273633 TTTTATTTAATAATTTTATATAT
1 TTTTATTAAAAAATTTTATATAT
67273656 TTTT
1 TTTT
67273660 CATTTATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 7 0.28
24 6 0.24
25 12 0.48
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTTATTAAAAAATTTTATATAT
Found at i:67273654 original size:26 final size:25
Alignment explanation
Indices: 67273608--67273681 Score: 62
Period size: 26 Copynumber: 2.9 Consensus size: 25
67273598 AATTTTTTAA
* *
67273608 TTTTATTAAAAAATATT-TATATTAT
1 TTTTATT-TAAAATTTTATATATTAT
*
67273633 TTTTATTTAATAATTTTATATATTTT
1 TTTTATTTAA-AATTTTATATATTAT
*
67273659 TCATTTA-TTAAAATTATATATAT
1 T--TTTATTTAAAATTTTATATAT
67273682 AGACATATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
24 2 0.05
25 12 0.29
26 19 0.46
27 4 0.10
28 4 0.10
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.59
Consensus pattern (25 bp):
TTTTATTTAAAATTTTATATATTAT
Found at i:67273658 original size:22 final size:22
Alignment explanation
Indices: 67273597--67273658 Score: 63
Period size: 25 Copynumber: 2.7 Consensus size: 22
67273587 TTTGTCATAT
*
67273597 AAATTTTTTA-ATTTTATTAAA
1 AAATTTTATATATTTTATTAAA
*
67273618 AAATATTTATATTATTTTTATTTAA
1 AAAT-TTTATA-TA-TTTTATTAAA
*
67273643 TAATTTTATATATTTT
1 AAATTTTATATATTTT
67273659 TCATTTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
21 4 0.12
22 9 0.26
23 2 0.06
24 7 0.21
25 12 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
AAATTTTATATATTTTATTAAA
Found at i:67273659 original size:24 final size:25
Alignment explanation
Indices: 67273608--67273681 Score: 71
Period size: 24 Copynumber: 3.0 Consensus size: 25
67273598 AATTTTTTAA
* *
67273608 TTTTATTAAAAAATATTTATAT-TAT
1 TTTTATTTAATAAT-TTTATATATAT
67273633 TTTTATTTAATAATTTTATATAT-T
1 TTTTATTTAATAATTTTATATATAT
* * **
67273657 TTTCATTTATTAAAATTATATATAT
1 TTTTATTTAATAATTTTATATATAT
67273682 AGACATATTA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
24 27 0.66
25 14 0.34
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.59
Consensus pattern (25 bp):
TTTTATTTAATAATTTTATATATAT
Found at i:67273776 original size:16 final size:16
Alignment explanation
Indices: 67273755--67273786 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67273745 TTTATATGTT
*
67273755 TAAATAATATAATATA
1 TAAATAACATAATATA
67273771 TAAATAACATAATATA
1 TAAATAACATAATATA
67273787 ATACATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (16 bp):
TAAATAACATAATATA
Found at i:67277948 original size:10 final size:10
Alignment explanation
Indices: 67277929--67277978 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
67277919 TTAAATTTTA
67277929 AAAGATAAAT
1 AAAGATAAAT
67277939 ACAA-ATAAAT
1 A-AAGATAAAT
*
67277949 AAAGATAATT
1 AAAGATAAAT
67277959 AAAGATAAAT
1 AAAGATAAAT
*
67277969 AAAAATAAAT
1 AAAGATAAAT
67277979 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:67278816 original size:96 final size:96
Alignment explanation
Indices: 67278641--67278825 Score: 266
Period size: 96 Copynumber: 1.9 Consensus size: 96
67278631 ATTTTATTTA
* * * * *
67278641 TTTATTTTTACTTAGAAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCAAGCACCCCAC
1 TTTATTTTTACTTAGAAACATATCGAACATTTTGACGCGAAGAGAGATGACACCAAACACCCCAC
* *
67278706 TCCAGTTACTCAGCCTAACACATTACTAATT
66 CCCAGTTACTCAGCCCAACACATTACTAATT
*
67278737 TTTATTTTT-CTTA-AGAACATATCGAACATTTTGACGCGAAGAGAGATGACAACCAAACACCTC
1 TTTATTTTTACTTAGA-AACATATCGAACATTTTGACGCGAAGAGAGATGAC-ACCAAACACCCC
67278800 ACCCCAGTTACTCAGCCCAACACATT
64 ACCCCAGTTACTCAGCCCAACACATT
67278826 CTTAAAAATT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
94 1 0.01
95 36 0.46
96 42 0.53
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (96 bp):
TTTATTTTTACTTAGAAACATATCGAACATTTTGACGCGAAGAGAGATGACACCAAACACCCCAC
CCCAGTTACTCAGCCCAACACATTACTAATT
Found at i:67279644 original size:15 final size:15
Alignment explanation
Indices: 67279624--67279671 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
67279614 TTAATATCTG
*
67279624 AAAATAATAAATAAT
1 AAAATAATAAATAAA
67279639 AAAATAATAAGATAAA
1 AAAATAATAA-ATAAA
67279655 ATAAATAA-AAATAAA
1 A-AAATAATAAATAAA
67279670 AA
1 AA
67279672 TTGGGTTGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 1 0.03
15 16 0.53
16 7 0.23
17 6 0.20
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (15 bp):
AAAATAATAAATAAA
Found at i:67283372 original size:10 final size:10
Alignment explanation
Indices: 67283353--67283395 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
67283343 TTAAATTCTA
67283353 AAAGATAAAT
1 AAAGATAAAT
67283363 ACAA-ATAAAT
1 A-AAGATAAAT
*
67283373 AAAGATAATT
1 AAAGATAAAT
67283383 AAAGATAAAT
1 AAAGATAAAT
67283393 AAA
1 AAA
67283396 ATTAAATCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.07
10 25 0.86
11 2 0.07
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:67290279 original size:23 final size:23
Alignment explanation
Indices: 67290253--67290297 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
67290243 TGGGTATGTG
* * *
67290253 ATGACGTTATTTTATAAATATGC
1 ATGAAGTTATCTTAAAAATATGC
*
67290276 ATGAATTTATCTTAAAAATATG
1 ATGAAGTTATCTTAAAAATATG
67290298 TTGAATTGGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (23 bp):
ATGAAGTTATCTTAAAAATATGC
Found at i:67293366 original size:157 final size:157
Alignment explanation
Indices: 67293080--67293394 Score: 621
Period size: 157 Copynumber: 2.0 Consensus size: 157
67293070 TTTCTTGGAC
67293080 ACATTGTATCTGCTGAAGGCATCAGGATAGATCCAAGTAAAATCTCAGCTATTGTCAATTGGAAT
1 ACATTGTATCTGCTGAAGGCATCAGGATAGATCCAAGTAAAATCTCAGCTATTGTCAATTGGAAT
67293145 CCACTAAAGAATGTATCTGAAGTTAGAAGTTTCTTGGGTTTAGTTGGTTATTATCGGAGATTTGT
66 CCACTAAAGAATGTATCTGAAGTTAGAAGTTTCTTGGGTTTAGTTGGTTATTATCGGAGATTTGT
67293210 ACAATGATTCTCTATAATAGCTTCTCT
131 ACAATGATTCTCTATAATAGCTTCTCT
67293237 ACATTGTATCTGCTGAAGGCATCAGGATAGATCCAAGTAAAATCTCAGCTATTGTCAATTGGAAT
1 ACATTGTATCTGCTGAAGGCATCAGGATAGATCCAAGTAAAATCTCAGCTATTGTCAATTGGAAT
67293302 CCACTAAAGAATGTATCTGAAGTTAGAAGTTTCTTGGGTTTAGTTGGTTATTATCGGAGATTTGT
66 CCACTAAAGAATGTATCTGAAGTTAGAAGTTTCTTGGGTTTAGTTGGTTATTATCGGAGATTTGT
*
67293367 ACAATGATTCTCTATGATAGCTTCTCT
131 ACAATGATTCTCTATAATAGCTTCTCT
67293394 A
1 A
67293395 ATGACTCGAT
Statistics
Matches: 157, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
157 157 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.36
Consensus pattern (157 bp):
ACATTGTATCTGCTGAAGGCATCAGGATAGATCCAAGTAAAATCTCAGCTATTGTCAATTGGAAT
CCACTAAAGAATGTATCTGAAGTTAGAAGTTTCTTGGGTTTAGTTGGTTATTATCGGAGATTTGT
ACAATGATTCTCTATAATAGCTTCTCT
Found at i:67312470 original size:19 final size:20
Alignment explanation
Indices: 67312443--67312483 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
67312433 GAAACAAGGG
67312443 AAGGAAAG-AAGAAAAAAGA
1 AAGGAAAGAAAGAAAAAAGA
* *
67312462 AAGGGAAGAAAGAAAAAGGA
1 AAGGAAAGAAAGAAAAAAGA
67312482 AA
1 AA
67312484 AATTGGGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (20 bp):
AAGGAAAGAAAGAAAAAAGA
Found at i:67313483 original size:6 final size:6
Alignment explanation
Indices: 67313469--67313508 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
67313459 TGTGTACCGC
* * *
67313469 TACTGT TACTAT TACTAT TACTGT TACTGT TACCGT TACT
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACT
67313509 AACACAGTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.23, C:0.20, G:0.10, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:67313507 original size:18 final size:18
Alignment explanation
Indices: 67313463--67313508 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
67313453 GTACTTTGTG
*
67313463 TACCGCTACTGTTACTAT
1 TACCGTTACTGTTACTAT
** *
67313481 TACTATTACTGTTACTGT
1 TACCGTTACTGTTACTAT
67313499 TACCGTTACT
1 TACCGTTACT
67313509 AACACAGTGT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (18 bp):
TACCGTTACTGTTACTAT
Found at i:67313662 original size:18 final size:18
Alignment explanation
Indices: 67313639--67313698 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
67313629 AACTGTCTGC
*
67313639 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTGT
* *
67313657 TACTGAATAAATGGCTGA
1 TACTGAATAAATGACTGT
* *
67313675 TACTAAATAAATGATTGT
1 TACTGAATAAATGACTGT
67313693 TACTGA
1 TACTGA
67313699 TTAACCGATT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (18 bp):
TACTGAATAAATGACTGT
Found at i:67320488 original size:208 final size:208
Alignment explanation
Indices: 67320130--67320755 Score: 1171
Period size: 208 Copynumber: 3.0 Consensus size: 208
67320120 TTCGACCAAC
*
67320130 CAATTATAGTGTATGTAAAGGGTGTTGTCAAAGGGCCTTAAGATACAAAAAATTTTATGTTTCAA
1 CAATTATAGTGTATGTAAAGGGTGTTGTCAAAGGGCCTTAAGATACAACAAATTTTATGTTTCAA
67320195 ATCAAAATCAAACCACTAAATACCTTTCATAAGAGCCATTCTTTACTTGGTTTTCTACAGCAGAC
66 ATCAAAATCAAACCACTAAATACCTTTCATAAGAGCCATTCTTTACTTGGTTTTCTACAGCAGAC
67320260 AAAGACTAAGGGACTTACATTTACTTGAGAATGATACCAAAGAGAGTGATTCAAAAATTGTATTT
131 AAAGACTAAGGGACTTACATTTACTTGAGAATGATACCAAAGAGAGTGATTCAAAAATTGTATTT
67320325 ATCTTTTCATATT
196 ATCTTTTCATATT
*
67320338 CAATTATAGTGTATGTAAAGGGTGTTGTCAAAGAGCCTTAAGATACAACAAATTTTATGTTTCAA
1 CAATTATAGTGTATGTAAAGGGTGTTGTCAAAGGGCCTTAAGATACAACAAATTTTATGTTTCAA
67320403 ATCAAAATCAAACCACTAAATACCTTTCATAAGAGCCATTCTTTACTTGGTTTTCTACAGCAGAC
66 ATCAAAATCAAACCACTAAATACCTTTCATAAGAGCCATTCTTTACTTGGTTTTCTACAGCAGAC
**
67320468 AAAGACTAAGGGACTTACATTTACTTGAGAATGATACCAAAGAGAGAAATTCAAAAATTGTATTT
131 AAAGACTAAGGGACTTACATTTACTTGAGAATGATACCAAAGAGAGTGATTCAAAAATTGTATTT
*
67320533 ATTTTTTCATATT
196 ATCTTTTCATATT
* *
67320546 CAATTATAGTGTATGTAAAGGGTGTTGTCAAAGGGCCTTAATATACACCAAATTTTATGTTTCAA
1 CAATTATAGTGTATGTAAAGGGTGTTGTCAAAGGGCCTTAAGATACAACAAATTTTATGTTTCAA
*
67320611 ATCAAAATCAAACCACTAAATACCTTTCATAAGAGCCATTCTTATACATGGTTTTCTACAGCAGA
66 ATCAAAATCAAACCACTAAATACCTTTCATAAGAGCCATTCTT-TACTTGGTTTTCTACAGCAGA
67320676 CAAAGACTAAGGGACTTACATTTACTTGAGAATGATACCAAAGAGAGTGATTCAAAAATTGTATT
130 CAAAGACTAAGGGACTTACATTTACTTGAGAATGATACCAAAGAGAGTGATTCAAAAATTGTATT
67320741 TATCTTTTCATATT
195 TATCTTTTCATATT
67320755 C
1 C
67320756 TATGTTGGAA
Statistics
Matches: 405, Mismatches: 12, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
208 308 0.76
209 97 0.24
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.33
Consensus pattern (208 bp):
CAATTATAGTGTATGTAAAGGGTGTTGTCAAAGGGCCTTAAGATACAACAAATTTTATGTTTCAA
ATCAAAATCAAACCACTAAATACCTTTCATAAGAGCCATTCTTTACTTGGTTTTCTACAGCAGAC
AAAGACTAAGGGACTTACATTTACTTGAGAATGATACCAAAGAGAGTGATTCAAAAATTGTATTT
ATCTTTTCATATT
Found at i:67325998 original size:65 final size:65
Alignment explanation
Indices: 67325919--67326049 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
67325909 ATAGAATAAG
*
67325919 AAAGAAAGAAAAATGGAATAATAAAATGGACCTCCGTATTCATGAAAATTAAGATTGAAAATTAA
1 AAAGAAAGAAAAATGGAATAATAAAATAGACCTCCGTATTCATGAAAATTAAGATTGAAAATTAA
*
67325984 AAAGAAAGAAAAATGGAATAATAAAATAGACCTTCGTATTCATGAAAATTAAGATTGAAAATTAA
1 AAAGAAAGAAAAATGGAATAATAAAATAGACCTCCGTATTCATGAAAATTAAGATTGAAAATTAA
67326049 A
1 A
67326050 TTGTAAAACT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.55, C:0.07, G:0.15, T:0.24
Consensus pattern (65 bp):
AAAGAAAGAAAAATGGAATAATAAAATAGACCTCCGTATTCATGAAAATTAAGATTGAAAATTAA
Found at i:67327477 original size:8 final size:8
Alignment explanation
Indices: 67327464--67327516 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
67327454 TAAAATTTAT
67327464 AAAAATAA
1 AAAAATAA
67327472 AAAAATAA
1 AAAAATAA
* *
67327480 AAATACAA
1 AAAAATAA
* *
67327488 AGATATAA
1 AAAAATAA
* *
67327496 AAAATTCA
1 AAAAATAA
67327504 AAAAATAA
1 AAAAATAA
67327512 AAAAA
1 AAAAA
67327517 AAATTGGTTG
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (8 bp):
AAAAATAA
Found at i:67327511 original size:16 final size:16
Alignment explanation
Indices: 67327464--67327515 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
67327454 TAAAATTTAT
67327464 AAAAATA-AAAAAAT-
1 AAAAATACAAAAAATA
*
67327478 AAAAATACAAAGATATA
1 AAAAATACAAA-AAATA
*
67327495 AAAAATTCAAAAAATA
1 AAAAATACAAAAAATA
67327511 AAAAA
1 AAAAA
67327516 AAAATTGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 7 0.22
15 3 0.09
16 12 0.38
17 10 0.31
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (16 bp):
AAAAATACAAAAAATA
Found at i:67330326 original size:87 final size:87
Alignment explanation
Indices: 67330180--67330351 Score: 335
Period size: 87 Copynumber: 2.0 Consensus size: 87
67330170 TTCAGCCCAT
*
67330180 TGTTGAAATGATTAATTACCTTTGTCTGAAAAACTAGTCACTGTTGGTGGTAGGATTAGCATAAA
1 TGTTGAAATGATTAATTACCTTTGTCTGAAAAACTAGTCACTGTCGGTGGTAGGATTAGCATAAA
67330245 TCCAATGAATTATGGTACACAC
66 TCCAATGAATTATGGTACACAC
67330267 TGTTGAAATGATTAATTACCTTTGTCTGAAAAACTAGTCACTGTCGGTGGTAGGATTAGCATAAA
1 TGTTGAAATGATTAATTACCTTTGTCTGAAAAACTAGTCACTGTCGGTGGTAGGATTAGCATAAA
67330332 TCCAATGAATTATGGTACAC
66 TCCAATGAATTATGGTACAC
67330352 TTTTTTACGA
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (87 bp):
TGTTGAAATGATTAATTACCTTTGTCTGAAAAACTAGTCACTGTCGGTGGTAGGATTAGCATAAA
TCCAATGAATTATGGTACACAC
Found at i:67330669 original size:27 final size:27
Alignment explanation
Indices: 67330638--67330689 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
67330628 TTAAAATTCA
67330638 ACTTTGTAATATAATTACAGCGAGGTG
1 ACTTTGTAATATAATTACAGCGAGGTG
67330665 ACTTTGTAATATAATTACAGCGAGG
1 ACTTTGTAATATAATTACAGCGAGG
67330690 CGGTACTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33
Consensus pattern (27 bp):
ACTTTGTAATATAATTACAGCGAGGTG
Found at i:67333340 original size:13 final size:13
Alignment explanation
Indices: 67333324--67333359 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
67333314 TAATTCTAAA
*
67333324 TTTTGTAATTTAT
1 TTTTATAATTTAT
*
67333337 TTTTTTAATTTAT
1 TTTTATAATTTAT
67333350 TTTTATAATT
1 TTTTATAATT
67333360 GCAATTCCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (13 bp):
TTTTATAATTTAT
Found at i:67342560 original size:30 final size:30
Alignment explanation
Indices: 67342526--67342586 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67342516 TCCTTAACTC
67342526 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
67342556 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
67342586 A
1 A
67342587 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:67345897 original size:13 final size:14
Alignment explanation
Indices: 67345881--67345913 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
67345871 TAAATAGCAT
67345881 TATTAATATTTT-A
1 TATTAATATTTTAA
67345894 TATTAATATTTTAA
1 TATTAATATTTTAA
67345908 TATTAA
1 TATTAA
67345914 CAAATAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TATTAATATTTTAA
Found at i:67348483 original size:30 final size:31
Alignment explanation
Indices: 67348422--67348483 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
67348412 GGAGGTGGGA
*
67348422 TGAGAGGGGAGTAAAAGTTTTTAGGGAAAAG
1 TGAGAGGGGAGTAAAAGTTTTGAGGGAAAAG
* *
67348453 TGAGA-GGGAGTAAAAGTTTTGGGGGGAAAG
1 TGAGAGGGGAGTAAAAGTTTTGAGGGAAAAG
67348483 T
1 T
67348484 AAAAAAGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 23 0.82
31 5 0.18
ACGTcount: A:0.35, C:0.00, G:0.42, T:0.23
Consensus pattern (31 bp):
TGAGAGGGGAGTAAAAGTTTTGAGGGAAAAG
Found at i:67348780 original size:8 final size:9
Alignment explanation
Indices: 67348769--67348803 Score: 56
Period size: 8 Copynumber: 4.1 Consensus size: 9
67348759 AATATTGAAC
67348769 ATAAT-TAA
1 ATAATATAA
67348777 ATAAT-TAA
1 ATAATATAA
67348785 ATAATATAA
1 ATAATATAA
67348794 ATAATATAA
1 ATAATATAA
67348803 A
1 A
67348804 ATGTGAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 13 0.50
9 13 0.50
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
ATAATATAA
Found at i:67348797 original size:17 final size:17
Alignment explanation
Indices: 67348756--67348803 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
67348746 ACAAAAATTG
67348756 ATAAAT-ATTGAACATAAT
1 ATAAATAATT-AA-ATAAT
67348774 -TAAATAATTAAATAAT
1 ATAAATAATTAAATAAT
67348790 ATAAATAATATAAA
1 ATAAATAAT-TAAA
67348804 ATGTGAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 5 0.19
17 15 0.56
18 7 0.26
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (17 bp):
ATAAATAATTAAATAAT
Found at i:67360032 original size:38 final size:39
Alignment explanation
Indices: 67359948--67360082 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
67359938 ACCAATATGG
*
67359948 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
67359987 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
67360025 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
67360066 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
67360083 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:67361664 original size:5 final size:5
Alignment explanation
Indices: 67361646--67361681 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
67361636 TTTCTTTTAT
67361646 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA
67361682 CTTAATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:67368313 original size:22 final size:22
Alignment explanation
Indices: 67368285--67368327 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
67368275 TTAAGGGAAC
67368285 TCTTCCATGGTGTTTTTGCTGG
1 TCTTCCATGGTGTTTTTGCTGG
67368307 TCTTCCATGGTGTTTTTGCTG
1 TCTTCCATGGTGTTTTTGCTG
67368328 ATGAGAATGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.05, C:0.19, G:0.26, T:0.51
Consensus pattern (22 bp):
TCTTCCATGGTGTTTTTGCTGG
Found at i:67374541 original size:21 final size:21
Alignment explanation
Indices: 67374515--67374555 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
67374505 GTACATCATC
67374515 AACAGAAGCTCATAAGAGCTT
1 AACAGAAGCTCATAAGAGCTT
* *
67374536 AACAGAAGCTCGTTAGAGCT
1 AACAGAAGCTCATAAGAGCT
67374556 AATCCACCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.20
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTT
Found at i:67380069 original size:47 final size:47
Alignment explanation
Indices: 67380000--67380092 Score: 141
Period size: 47 Copynumber: 2.0 Consensus size: 47
67379990 GAGATAGTTT
** *
67380000 TACGGCCCTTTCGGATTCCTATCACAACTTCCAAGTCACAAACACCC
1 TACGGCCCTTTCCCATTCCTATCACAACTCCCAAGTCACAAACACCC
* *
67380047 TACGGCCCTTTCCCATTCCTATCAGAACTCCCAAGTCACCAACACC
1 TACGGCCCTTTCCCATTCCTATCACAACTCCCAAGTCACAAACACC
67380093 ATCAATCTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.27, C:0.41, G:0.10, T:0.23
Consensus pattern (47 bp):
TACGGCCCTTTCCCATTCCTATCACAACTCCCAAGTCACAAACACCC
Found at i:67380656 original size:13 final size:14
Alignment explanation
Indices: 67380635--67380673 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
67380625 ATTTATTTTT
67380635 ATATAAAAATTAAA
1 ATATAAAAATTAAA
*
67380649 AT-TAAAAATAAAA
1 ATATAAAAATTAAA
67380662 ATATATAAAATT
1 ATATA-AAAATT
67380674 TAATTACGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 12 0.57
14 4 0.19
15 5 0.24
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
ATATAAAAATTAAA
Found at i:67382954 original size:22 final size:23
Alignment explanation
Indices: 67382920--67382968 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
67382910 TAAAGCTATG
*
67382920 ATTTTAATGAAAA-GTTCATTTA
1 ATTTTAATAAAAATGTTCATTTA
* * *
67382942 ATTTTATTAAAAATTTTCATTTC
1 ATTTTAATAAAAATGTTCATTTA
67382965 ATTT
1 ATTT
67382969 GGTGAGGTCC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (23 bp):
ATTTTAATAAAAATGTTCATTTA
Found at i:67384280 original size:55 final size:58
Alignment explanation
Indices: 67384221--67384332 Score: 135
Period size: 58 Copynumber: 2.0 Consensus size: 58
67384211 TTATTTTTAT
*
67384221 AATATTA-TATATTGT-GA-TA-TTTATT-AATTCATATTTTAATAATAATTATATTAAG
1 AATATTATTAAATTGTAGATTATTTTATTAAATT-ATA-TTTAATAATAATTATATTAAG
* * *
67384276 AATATTATTAAATTGTATATTATTTTATTAAATTGTATTTAATAATAATTATGTTAA
1 AATATTATTAAATTGTAGATTATTTTATTAAATTATATTTAATAATAATTATATTAA
67384333 AACATTTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
55 7 0.15
56 7 0.15
57 1 0.02
58 21 0.44
59 8 0.17
60 4 0.08
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (58 bp):
AATATTATTAAATTGTAGATTATTTTATTAAATTATATTTAATAATAATTATATTAAG
Found at i:67384380 original size:47 final size:46
Alignment explanation
Indices: 67384293--67384381 Score: 126
Period size: 47 Copynumber: 1.9 Consensus size: 46
67384283 TTAAATTGTA
* * *
67384293 TATTATTTTATTAAATTGTATTTAATAATAATTATGTTAAAACATT
1 TATTATTTTATTAAAATATATTTAATAATAATTATATTAAAACATT
67384339 TATTATTTTTATTAAAATATATTTAATAATAATCT-TATTAAAA
1 TATTA-TTTTATTAAAATATATTTAATAATAAT-TATATTAAAA
67384382 TTTAATAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
46 5 0.13
47 32 0.84
48 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (46 bp):
TATTATTTTATTAAAATATATTTAATAATAATTATATTAAAACATT
Found at i:67384492 original size:13 final size:13
Alignment explanation
Indices: 67384474--67384500 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67384464 TATAACATCT
67384474 ATACTATTTAACC
1 ATACTATTTAACC
67384487 ATACTATTTAACC
1 ATACTATTTAACC
67384500 A
1 A
67384501 AACACAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (13 bp):
ATACTATTTAACC
Found at i:67385826 original size:25 final size:25
Alignment explanation
Indices: 67385745--67385827 Score: 60
Period size: 25 Copynumber: 3.2 Consensus size: 25
67385735 AATTTCTTCC
* * *
67385745 ATTAAAACAAACGTTCACTTTCAAT
1 ATTAAAATAAACCTTCATTTTCAAT
* **
67385770 ATTAAAATAAACCCTCATATTT-TTT
1 ATTAAAATAAACCTTCAT-TTTCAAT
*
67385795 GCCATTAAAATAAACTTTCATTTTCAAT
1 ---ATTAAAATAAACCTTCATTTTCAAT
67385823 ATTAA
1 ATTAA
67385828 GAACCCAAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 10
0.68 0.16 0.16
Matches are distributed among these distances:
25 20 0.47
26 3 0.07
27 3 0.07
28 17 0.40
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.39
Consensus pattern (25 bp):
ATTAAAATAAACCTTCATTTTCAAT
Found at i:67396435 original size:23 final size:23
Alignment explanation
Indices: 67396409--67396454 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
67396399 CTAAAAACAA
67396409 GTTATAGTGAATTTATATTTGCC
1 GTTATAGTGAATTTATATTTGCC
67396432 GTTATAGTGAATTTATATTTGCC
1 GTTATAGTGAATTTATATTTGCC
67396455 CGTAGTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (23 bp):
GTTATAGTGAATTTATATTTGCC
Found at i:67398149 original size:20 final size:20
Alignment explanation
Indices: 67398124--67398169 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
67398114 ATCTTAAAAT
67398124 AAATTCAATTTTGTACTTCG
1 AAATTCAATTTTGTACTTCG
*
67398144 AAATTCAATTTTGTACTTGG
1 AAATTCAATTTTGTACTTCG
67398164 AAATTC
1 AAATTC
67398170 TAAGTAATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (20 bp):
AAATTCAATTTTGTACTTCG
Found at i:67399661 original size:11 final size:10
Alignment explanation
Indices: 67399619--67399689 Score: 60
Period size: 9 Copynumber: 7.4 Consensus size: 10
67399609 AATTTTTTAA
*
67399619 TATTTAAAAT
1 TATTAAAAAT
67399629 T-TTAAAAA-
1 TATTAAAAAT
*
67399637 TATTAAAAAA
1 TATTAAAAAT
67399647 TATTAAGAAAT
1 TATTAA-AAAT
*
67399658 TATT-AACAT
1 TATTAAAAAT
* *
67399667 TATTGAAAAG
1 TATTAAAAAT
67399677 TA-TAAAAAT
1 TATTAAAAAT
67399686 TATT
1 TATT
67399690 TTTAAATGGT
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
8 1 0.02
9 27 0.55
10 14 0.29
11 7 0.14
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.39
Consensus pattern (10 bp):
TATTAAAAAT
Found at i:67399663 original size:21 final size:19
Alignment explanation
Indices: 67399624--67399663 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
67399614 TTTAATATTT
*
67399624 AAAATTTTAAAAATATTAA
1 AAAATATTAAAAATATTAA
67399643 AAAATATTAAGAAATTATTAA
1 AAAATATTAA-AAA-TATTAA
67399664 CATTATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 3 0.17
21 6 0.33
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
AAAATATTAAAAATATTAA
Found at i:67409901 original size:12 final size:13
Alignment explanation
Indices: 67409878--67409909 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
67409868 TGACATAGCT
67409878 CTAACAACTACAA
1 CTAACAACTACAA
67409891 CTAAC-ACTACAA
1 CTAACAACTACAA
67409903 CT-ACAAC
1 CTAACAAC
67409910 AACCATCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 11 0.61
13 5 0.28
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (13 bp):
CTAACAACTACAA
Found at i:67410356 original size:27 final size:28
Alignment explanation
Indices: 67410326--67410379 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
67410316 GAGAGGCAGA
67410326 GGCTAATG-GACAGAGAG-GAAGGAGAAT
1 GGCTAATGTGA-AGAGAGTGAAGGAGAAT
**
67410353 GGCTGCTGTGAAGAGAGTGAAGGAGAA
1 GGCTAATGTGAAGAGAGTGAAGGAGAA
67410380 CGATAATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.37, C:0.07, G:0.43, T:0.13
Consensus pattern (28 bp):
GGCTAATGTGAAGAGAGTGAAGGAGAAT
Found at i:67413875 original size:13 final size:13
Alignment explanation
Indices: 67413857--67413899 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
67413847 CCACACGGCC
67413857 TCCACAGGGCCAG
1 TCCACAGGGCCAG
* *
67413870 TCCACA-CGCC-C
1 TCCACAGGGCCAG
67413881 TCCACAGGGCCAG
1 TCCACAGGGCCAG
67413894 TCCACA
1 TCCACA
67413900 CGCCCGTGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.23, C:0.47, G:0.21, T:0.09
Consensus pattern (13 bp):
TCCACAGGGCCAG
Found at i:67413882 original size:24 final size:24
Alignment explanation
Indices: 67413847--67413904 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
67413837 CCATGTATTG
*
67413847 CCACACGGCCTCCACAGGGCCAGT
1 CCACACGCCCTCCACAGGGCCAGT
67413871 CCACACGCCCTCCACAGGGCCAGT
1 CCACACGCCCTCCACAGGGCCAGT
67413895 CCACACGCCC
1 CCACACGCCC
67413905 GTGTGGCGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.21, C:0.52, G:0.21, T:0.07
Consensus pattern (24 bp):
CCACACGCCCTCCACAGGGCCAGT
Found at i:67420055 original size:25 final size:25
Alignment explanation
Indices: 67420024--67420072 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
67420014 CAAGCGAGCC
67420024 ATATCAGGAAGCTCACAAAGAGCTT
1 ATATCAGGAAGCTCACAAAGAGCTT
* * *
67420049 ATATCAGGATGTTCATAAAGAGCT
1 ATATCAGGAAGCTCACAAAGAGCT
67420073 GCAGCATGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.24
Consensus pattern (25 bp):
ATATCAGGAAGCTCACAAAGAGCTT
Found at i:67427532 original size:20 final size:20
Alignment explanation
Indices: 67427506--67427557 Score: 74
Period size: 17 Copynumber: 2.8 Consensus size: 20
67427496 AGCAATGAAT
67427506 CTGTTCACCAAGAGATACAA
1 CTGTTCACCAAGAGATACAA
*
67427526 TTGTTCA--AA-AGATACAA
1 CTGTTCACCAAGAGATACAA
67427543 CTGTTCACCAAGAGA
1 CTGTTCACCAAGAGA
67427558 CAAAACTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 14 0.52
18 2 0.07
19 2 0.07
20 9 0.33
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.23
Consensus pattern (20 bp):
CTGTTCACCAAGAGATACAA
Found at i:67446316 original size:25 final size:24
Alignment explanation
Indices: 67446267--67446316 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
67446257 AAGCATTAAC
** *
67446267 TAATTATTTACTGTATAAAATAAT
1 TAATTATTTACAATATAAAAGAAT
67446291 TAATTATTTACAAATATAAAAGAAT
1 TAATTATTTAC-AATATAAAAGAAT
67446316 T
1 T
67446317 TAGATAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (24 bp):
TAATTATTTACAATATAAAAGAAT
Found at i:67449316 original size:12 final size:12
Alignment explanation
Indices: 67449299--67449323 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67449289 TCCTTTCCTT
67449299 TCTTTTCTTTTC
1 TCTTTTCTTTTC
67449311 TCTTTTCTTTTC
1 TCTTTTCTTTTC
67449323 T
1 T
67449324 ATTTGCTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TCTTTTCTTTTC
Found at i:67449976 original size:15 final size:15
Alignment explanation
Indices: 67449947--67449983 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
67449937 TTCTTCTTCT
**
67449947 TCTTCTTCTTCCTCA
1 TCTTCTTCTAACTCA
67449962 TCTTCTTCTAACTCA
1 TCTTCTTCTAACTCA
67449977 TCTTCTT
1 TCTTCTT
67449984 GTTCCCAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.11, C:0.35, G:0.00, T:0.54
Consensus pattern (15 bp):
TCTTCTTCTAACTCA
Found at i:67449983 original size:3 final size:3
Alignment explanation
Indices: 67449915--67449970 Score: 94
Period size: 3 Copynumber: 18.7 Consensus size: 3
67449905 GACTCAACAG
* *
67449915 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CCT CAT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
67449963 CTT CTT CT
1 CTT CTT CT
67449971 AACTCATCTT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (3 bp):
CTT
Found at i:67456153 original size:15 final size:14
Alignment explanation
Indices: 67456132--67456174 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
67456122 TAACTAAAGC
67456132 ACTATTCTGAACAT
1 ACTATTCTGAACAT
67456146 AGCTATTCTTGAACA-
1 A-CTATTC-TGAACAT
*
67456161 ATTATTCTGAACAT
1 ACTATTCTGAACAT
67456175 GATAGCTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
13 6 0.24
14 6 0.24
15 7 0.28
16 6 0.24
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (14 bp):
ACTATTCTGAACAT
Found at i:67456484 original size:7 final size:7
Alignment explanation
Indices: 67456474--67456503 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
67456464 ATATATTATA
*
67456474 TTGTATT
1 TTGTACT
67456481 TTGTACT
1 TTGTACT
67456488 TTGTACT
1 TTGTACT
67456495 TTGTACT
1 TTGTACT
67456502 TT
1 TT
67456504 TTCATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (7 bp):
TTGTACT
Found at i:67458241 original size:22 final size:20
Alignment explanation
Indices: 67458191--67458242 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 20
67458181 AGCCCACTCA
67458191 TATTATTTTATTTTAATATT
1 TATTATTTTATTTTAATATT
* *
67458211 TAATAATTTTATATTTTATATT
1 T-ATTATTTTAT-TTTAATATT
67458233 TATTGATTTT
1 TATT-ATTTT
67458243 TTTATACACT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 1 0.04
21 11 0.42
22 14 0.54
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (20 bp):
TATTATTTTATTTTAATATT
Found at i:67465125 original size:19 final size:19
Alignment explanation
Indices: 67465081--67465125 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
67465071 TAGTACGATA
*
67465081 ATTTTTTATATTTCTTTAC
1 ATTTTTTAAATTTCTTTAC
**
67465100 AAATTTTAAATTTCTTTAC
1 ATTTTTTAAATTTCTTTAC
67465119 ATTTTTT
1 ATTTTTT
67465126 TATAATTTTC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTTTTAAATTTCTTTAC
Found at i:67465134 original size:10 final size:10
Alignment explanation
Indices: 67465078--67465245 Score: 71
Period size: 10 Copynumber: 16.9 Consensus size: 10
67465068 TTTTAGTACG
67465078 ATAATTTTTT
1 ATAATTTTTT
67465088 AT-ATTTCTTT
1 ATAATTT-TTT
* *
67465098 ACAA-ATTTT
1 ATAATTTTTT
67465107 A-AATTTCTTT
1 ATAATTT-TTT
* *
67465117 ACATTTTTTT
1 ATAATTTTTT
67465127 ATAATTTTCTT
1 ATAATTTT-TT
** **
67465138 ACGATTTTAC
1 ATAATTTTTT
* *
67465148 AAAATTTTAT
1 ATAATTTTTT
67465158 AT-ATTTTTT
1 ATAATTTTTT
* *
67465167 CT-ATATTTCT
1 ATAAT-TTTTT
*
67465177 AT-ATATTTT
1 ATAATTTTTT
67465186 ATAATTTTTT
1 ATAATTTTTT
*
67465196 ATGA-TTTTT
1 ATAATTTTTT
**
67465205 ATAAAATTTT
1 ATAATTTTTT
*
67465215 ACAATTTTTTT
1 ATAA-TTTTTT
67465226 ATAATTTTTTT
1 ATAA-TTTTTT
*
67465237 CTAATTTTT
1 ATAATTTTT
67465246 AATTTTTAAA
Statistics
Matches: 119, Mismatches: 29, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
8 2 0.02
9 31 0.26
10 56 0.47
11 30 0.25
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.62
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:67465139 original size:21 final size:21
Alignment explanation
Indices: 67465082--67465145 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 21
67465072 AGTACGATAA
*
67465082 TTTTTTATATTTCTTTAC-A-
1 TTTTTTAAATTTCTTTACGAT
**
67465101 AATTTTAAATTTCTTTAC-AT
1 TTTTTTAAATTTCTTTACGAT
67465121 TTTTTTATAATTT-TCTTACGAT
1 TTTTTTA-AATTTCT-TTACGAT
67465143 TTT
1 TTT
67465146 ACAAAATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 16 0.44
20 6 0.17
21 9 0.25
22 5 0.14
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTTTAAATTTCTTTACGAT
Found at i:67465145 original size:22 final size:20
Alignment explanation
Indices: 67465082--67465133 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
67465072 AGTACGATAA
*
67465082 TTTTTTATATTTCTTTACA-
1 TTTTTTAAATTTCTTTACAT
**
67465101 AATTTTAAATTTCTTTACAT
1 TTTTTTAAATTTCTTTACAT
67465121 TTTTTTATAATTT
1 TTTTTTA-AATTT
67465134 TCTTACGATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 16 0.62
20 5 0.19
21 5 0.19
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTTTAAATTTCTTTACAT
Found at i:67465194 original size:9 final size:9
Alignment explanation
Indices: 67465150--67465317 Score: 58
Period size: 9 Copynumber: 17.8 Consensus size: 9
67465140 GATTTTACAA
67465150 AATTTTATAT
1 AATTTT-TAT
* *
67465160 ATTTTTTCT
1 AATTTTTAT
*
67465169 ATATTTCTAT
1 A-ATTTTTAT
67465179 -ATATTTTAT
1 AAT-TTTTAT
67465188 AATTTTTTAT
1 AA-TTTTTAT
*
67465198 GATTTTTAT
1 AATTTTTAT
* *
67465207 AAAATTTTAC
1 -AATTTTTAT
67465217 AATTTTTTTAT
1 AA--TTTTTAT
*
67465228 AATTTTTTTCT
1 AA--TTTTTAT
67465239 AA-TTTT-T
1 AATTTTTAT
67465246 AATTTTTAAAT
1 AATTTTT--AT
*
67465257 ATTTTTTATT
1 AATTTTTA-T
* *
67465267 AAATTTAAT
1 AATTTTTAT
*
67465276 CATTTTTAT
1 AATTTTTAT
*
67465285 AACTTTTATT
1 AATTTTTA-T
*
67465295 GATTTTTAT
1 AATTTTTAT
67465304 --TTTTTAT
1 AATTTTTAT
*
67465311 CATTTTT
1 AATTTTT
67465318 TTCCACATGT
Statistics
Matches: 119, Mismatches: 24, Indels: 31
0.68 0.14 0.18
Matches are distributed among these distances:
7 10 0.08
8 10 0.08
9 37 0.31
10 37 0.31
11 25 0.21
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (9 bp):
AATTTTTAT
Found at i:67465224 original size:30 final size:30
Alignment explanation
Indices: 67465123--67465252 Score: 117
Period size: 30 Copynumber: 4.4 Consensus size: 30
67465113 CTTTACATTT
* * *
67465123 TTTTATAATTTTCTTACGA-TTTTACAAAA
1 TTTTATAATTTTTTTATGATTTTTATAAAA
* *
67465152 TTTTATATATTTTTTCTAT-ATTTCTAT-ATA
1 TTTTATA-ATTTTTT-TATGATTTTTATAAAA
67465182 TTTTATAA-TTTTTTATGATTTTTATAAAA
1 TTTTATAATTTTTTTATGATTTTTATAAAA
* * * **
67465211 TTTTACAATTTTTTTATAATTTTTTTCTAA
1 TTTTATAATTTTTTTATGATTTTTATAAAA
67465241 TTTT-TAATTTTT
1 TTTTATAATTTTT
67465253 AAATATTTTT
Statistics
Matches: 82, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
27 3 0.04
28 12 0.15
29 24 0.29
30 37 0.45
31 6 0.07
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (30 bp):
TTTTATAATTTTTTTATGATTTTTATAAAA
Found at i:67465249 original size:29 final size:28
Alignment explanation
Indices: 67465181--67465319 Score: 81
Period size: 29 Copynumber: 4.9 Consensus size: 28
67465171 ATTTCTATAT
* **
67465181 ATTTTATAA-TTTTTTATGATTTTTATAAA
1 ATTTT-TAATTTTTTTATAATTTTT-TTTA
*
67465210 ATTTTACAATTTTTTTATAATTTTTTTCTA
1 ATTTT-TAATTTTTTTATAATTTTTTT-TA
**
67465240 ATTTTTAATTTTTAAAT-ATTTTTTATTA
1 ATTTTTAATTTTTTTATAATTTTTT-TTA
* * * * *
67465268 A-ATTTAATCATTTTTATAACTTTTATTG
1 ATTTTTAAT-TTTTTTATAATTTTTTTTA
*
67465296 ATTTTT-A-TTTTTTATCATTTTTTT
1 ATTTTTAATTTTTTTATAATTTTTTT
67465320 CCACATGTCA
Statistics
Matches: 85, Mismatches: 19, Indels: 15
0.71 0.16 0.13
Matches are distributed among these distances:
26 13 0.15
27 6 0.07
28 19 0.22
29 27 0.32
30 20 0.24
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (28 bp):
ATTTTTAATTTTTTTATAATTTTTTTTA
Found at i:67465494 original size:89 final size:90
Alignment explanation
Indices: 67465383--67465589 Score: 222
Period size: 90 Copynumber: 2.3 Consensus size: 90
67465373 GGGGCGATTT
* * * * * *
67465383 AAGTATCCAATTTAGTGAAAAAAAAAACATGGGTTTAATTACT-TTTTTTGAAAAA-GTTT-TAG
1 AAGTACCCAATTGAGTGAAAAAAAAAACAT-AGCTTAACTACTATTTTTTGAAAAACGTTTGAAG
*
67465445 TGCCTTTTTTATGCATTCTAAAAGTTC
65 -GCCTTTTTGATGCATTCTAAAAGTTC
* * *
67465472 AAGTACCCAATTGAGTGTAAAAAAAATCATAGCTTAACTACTATTTTTTTAAAAACGTTTGAAGG
1 AAGTACCCAATTGAGTGAAAAAAAAAACATAGCTTAACTACTATTTTTTGAAAAACGTTTGAAGG
* * *
67465537 TCTTTTTGATGCATTGTGAAAGTTC
66 CCTTTTTGATGCATTCTAAAAGTTC
* * *
67465562 AAGTACCCAAGTAAATGAAAAAACAAAA
1 AAGTACCCAATTGAGTGAAAAAA-AAAA
67465590 GTAGGGACTT
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
88 9 0.09
89 37 0.39
90 45 0.47
91 5 0.05
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.35
Consensus pattern (90 bp):
AAGTACCCAATTGAGTGAAAAAAAAAACATAGCTTAACTACTATTTTTTGAAAAACGTTTGAAGG
CCTTTTTGATGCATTCTAAAAGTTC
Found at i:67467636 original size:13 final size:13
Alignment explanation
Indices: 67467604--67467642 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
67467594 GGCTATTCGT
*
67467604 CTCAAATAAAATA
1 CTCAAATAAAAAA
* *
67467617 TTTAAATAAAAAA
1 CTCAAATAAAAAA
67467630 CTCAAATAAAAAA
1 CTCAAATAAAAAA
67467643 TAAAACTAGC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (13 bp):
CTCAAATAAAAAA
Found at i:67469844 original size:31 final size:31
Alignment explanation
Indices: 67469807--67469953 Score: 215
Period size: 31 Copynumber: 4.7 Consensus size: 31
67469797 TGTGTACAAT
67469807 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
67469838 GTGAAAAGTGGTAGCATCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
67469869 GTGAAAAGTAGTAGCTTCGGCTTCCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
67469900 GTGAAAAGTGGTAGC-TCTAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTC-GGCTACCTGATCA
* *
67469931 GTGAATAGTGATAGCTTCGGCTA
1 GTGAAAAGTGGTAGCTTCGGCTA
67469954 TCGAATGTGA
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
30 2 0.02
31 98 0.96
32 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:67469972 original size:29 final size:29
Alignment explanation
Indices: 67469931--67469997 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
67469921 TACCTGATCA
* * * *
67469931 GTGAATAGTGATAGCTTCGGCTATCGAAT
1 GTGAAAAGGGATAGCTTCAGCTATCAAAT
67469960 GTGAAAAGGGATAGCTTCAGCTATCAAAT
1 GTGAAAAGGGATAGCTTCAGCTATCAAAT
67469989 -TGAGAAAGG
1 GTGA-AAAGG
67469998 AAAGGTATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCAGCTATCAAAT
Found at i:67470042 original size:33 final size:33
Alignment explanation
Indices: 67470000--67470152 Score: 189
Period size: 33 Copynumber: 4.6 Consensus size: 33
67469990 GAGAAAGGAA
* *
67470000 AGGTATACTTTGTGTATACTATTTGAAAATGTT
1 AGGTATACTTTGTGTATACCATTTGAAAAGGTT
67470033 AGGTATACTTTGTGTATACCATTTGAAAAGGTT
1 AGGTATACTTTGTGTATACCATTTGAAAAGGTT
* **
67470066 AGGTATACTTTGTGTATACCATATGAAAAGGGA
1 AGGTATACTTTGTGTATACCATTTGAAAAGGTT
* * * * **
67470099 AGGTATACTTTTTGGATATCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCATTTGAAAAGGTT
* *
67470132 AGGTATATTTTGTGTGTACCA
1 AGGTATACTTTGTGTATACCA
67470153 CTCGGAAAGA
Statistics
Matches: 106, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 106 1.00
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.38
Consensus pattern (33 bp):
AGGTATACTTTGTGTATACCATTTGAAAAGGTT
Found at i:67474188 original size:7 final size:7
Alignment explanation
Indices: 67474176--67474234 Score: 55
Period size: 7 Copynumber: 8.0 Consensus size: 7
67474166 ACTATCTATT
67474176 AAAACCC
1 AAAACCC
67474183 AAAACCC
1 AAAACCC
67474190 AAAACCC
1 AAAACCC
*
67474197 AAATCCC
1 AAAACCC
*
67474204 TAAACCC
1 AAAACCC
67474211 ATTAAAACCC
1 ---AAAACCC
* *
67474221 AATACTC
1 AAAACCC
67474228 AAAACCC
1 AAAACCC
67474235 CAACCAACTA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
7 35 0.85
10 6 0.15
ACGTcount: A:0.51, C:0.39, G:0.00, T:0.10
Consensus pattern (7 bp):
AAAACCC
Found at i:67474198 original size:38 final size:38
Alignment explanation
Indices: 67474147--67474244 Score: 94
Period size: 38 Copynumber: 2.6 Consensus size: 38
67474137 GGCCCATTTT
* * * *
67474147 AACCTAAACCCCAAACCCAACTATCTATTAAAACCCAA
1 AACCCAAAACCCAAACCCAACTACCCATTAAAACCCAA
67474185 AACCCAAAACCCAAATCCCTAA--ACCCATTAAAACCCAA
1 AACCCAAAACCCAAA-CCC-AACTACCCATTAAAACCCAA
* * *
67474223 TACTCAAAACCCCAA-CCAACTA
1 AACCCAAAACCCAAACCCAACTA
67474245 AACCCAAATT
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
35 2 0.04
36 2 0.04
37 1 0.02
38 39 0.80
39 3 0.06
40 2 0.04
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.13
Consensus pattern (38 bp):
AACCCAAAACCCAAACCCAACTACCCATTAAAACCCAA
Found at i:67475495 original size:137 final size:137
Alignment explanation
Indices: 67475327--67476008 Score: 952
Period size: 137 Copynumber: 4.9 Consensus size: 137
67475317 TTTTTTACTT
* *
67475327 TTATTATTATTATTATTATTATTAGTTTATATTTTTATTGTATATGTATATGTATATATATTTAT
1 TTATTACTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTAT
*
67475392 ACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTTTTGTAT
66 ACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTAT
67475457 TTCAATA
131 TTCAATA
67475464 TTATTACTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTAT
1 TTATTACTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTAT
*
67475529 ACATAGTATTATTTTTTAATTGCTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTAT
66 ACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTAT
67475594 TTCAATA
131 TTCAATA
*
67475601 TTATTACTATTATTATTATTATTATTATTATTAGTGTATATCTTTATTGTATATGTATATGTATA
1 TTATTAC---------TATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATA
* *
67475666 TATATTTATACATAGTATTATTTTTTAATTATTTTATTTTAATATTTTTATTATATTATATGTGC
57 TATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGC
*
67475731 CTTTTGTATTTCAATA
122 TTTTTGTATTTCAATA
*
67475747 TTA-T--TATTATTA--A-TATTAGTGTATA-TTTTATTATATATGTATATGTATATATATTTAT
1 TTATTACTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTAT
* *
67475805 ACATAGTATTATTTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGATTTTTATA
66 ACATAGTATTA-TTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTA
*
67475870 TTTTAATA
130 TTTCAATA
* * * *
67475878 CTATTACTATTATTATTATTATTATTATTAATATTAGTGTATATT-TTTAT-TATAAATGTATAT
1 TTATTACTATTATTATTATTATTAGT-GT-ATATT--T-T-TATTGTATATGTAT--ATGTATAT
* * * *
67475941 ATATTTATATATAGTACTA-TTTTTAATTACTTTATTTTAACATTATTATTATATTATATTTGCT
58 ATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCT
67476005 TTTT
123 TTTT
67476009 TTTGTGTATT
Statistics
Matches: 494, Mismatches: 26, Indels: 45
0.87 0.05 0.08
Matches are distributed among these distances:
130 42 0.09
131 69 0.14
132 2 0.00
134 16 0.03
136 1 0.00
137 146 0.30
138 1 0.00
139 3 0.01
140 1 0.00
142 50 0.10
143 5 0.01
144 29 0.06
145 1 0.00
146 128 0.26
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (137 bp):
TTATTACTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTAT
ACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTAT
TTCAATA
Found at i:67475614 original size:3 final size:3
Alignment explanation
Indices: 67475599--67475633 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
67475589 TGTATTTCAA
*
67475599 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
67475634 GTGTATATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:67475630 original size:146 final size:146
Alignment explanation
Indices: 67475321--67476049 Score: 822
Period size: 146 Copynumber: 5.2 Consensus size: 146
67475311 TATTTATTTT
* *
67475321 TTACTTTTATTATTATTATTATTATTATTAGTTTATATTTTTATTGTATATGTATATGTATATAT
1 TTACTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATAT
*
67475386 ATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTT
66 ATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTT
67475451 TTGTATTTCAATATTA
131 TTGTATTTCAATATTA
67475467 TTAC---------TATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATAT
1 TTACTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATAT
*
67475523 ATTTATACATAGTATTATTTTTTAATTGCTTTATTTTAATATTTTTATTATATTATATTTGCTTT
66 ATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTT
67475588 TTGTATTTCAATATTA
131 TTGTATTTCAATATTA
*
67475604 TTACTATTATTATTATTATTATTATTATTAGTGTATATCTTTATTGTATATGTATATGTATATAT
1 TTACTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATAT
* * *
67475669 ATTTATACATAGTATTATTTTTTAATTATTTTATTTTAATATTTTTATTATATTATATGTGCCTT
66 ATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTT
67475734 TTGTATTTCAATATTA
131 TTGTATTTCAATATTA
* * * * * *
67475750 TTATTATTAATATTAGTGTA-TATT-TTATTA---TATATGTATA-TGTATA--TATATTTATAC
1 TTACTATTATTATTA-T-TATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATAT
* * ** * * ** * *
67475807 ATA-GTAT-TATTTTTTTAATTACT--TTATTT-----TAATATTTTTATTATATTATATTTGAT
64 ATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCT
* * *
67475863 TTTTATATTTTAATACTA
129 TTTTGTATTTCAATATTA
67475881 TTACTATTATTATTATTATTATTATTAATATTAGTGTATATTTTTA-T-TATA---A-ATGTATA
1 TTACTATTATTATTATTATTATTA-T--TATTAGTGTATATTTTTATTGTATATGTATATGTATA
* * * *
67475940 TATATTTATATATAGTACTA-TTTTTAATTACTTTATTTTAACATTATTATTATATTATATTTGC
63 TATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGC
*
67476004 TTTTTTTTGTGTATTTCATTATTA
128 ----TTTT-TGTATTTCAATATTA
* * *
67476028 TTGCTAGTATTATTATCATTAT
1 TTACTATTATTATTATTATTAT
67476050 CATCATTGTT
Statistics
Matches: 498, Mismatches: 52, Indels: 65
0.81 0.08 0.11
Matches are distributed among these distances:
129 2 0.00
130 5 0.01
131 52 0.10
132 1 0.00
134 14 0.03
135 7 0.01
136 16 0.03
137 148 0.30
138 9 0.02
139 3 0.01
140 12 0.02
142 29 0.06
143 8 0.02
146 155 0.31
147 35 0.07
148 2 0.00
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.60
Consensus pattern (146 bp):
TTACTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATAT
ATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTT
TTGTATTTCAATATTA
Found at i:67475834 original size:80 final size:77
Alignment explanation
Indices: 67475750--67475985 Score: 209
Period size: 70 Copynumber: 3.2 Consensus size: 77
67475740 TTCAATATTA
67475750 TTATTATTAATATTAGTGTATATTTTATTATATATGTATATGTATATATATTTATACATAGTATT
1 TTATT-TTAATATTAGTGTATATTTTATTATATATGTATATGTATATATATTTATA-ATAGTATT
67475815 ATTTTTTTAATTACT
64 A-TTTTTTAATTACT
* * *
67475830 TTATTTTAATATT--T-T-TATTATATTATATTTG-AT-T-T-T-TATATTT-TAATACTATTAC
1 TTATTTTAATATTAGTGTATATTTTATTATATATGTATATGTATATATATTTATAATAGTATTA-
* *
67475885 TATTATT-ATTATT
65 T-TTTTTAATTACT
* *
67475898 ATTATTATTAATATTAGTGTATA-TTT-TTAT-TA--TAAATGTATATATATTTATATATAGTAC
1 -TTATT-TTAATATTAGTGTATATTTTATTATATATGTATATGTATATATATTTATA-ATAGTAT
67475958 TA-TTTTTAATTACT
63 TATTTTTTAATTACT
*
67475972 TTATTTTAACATTA
1 TTATTTTAATATTA
67475986 TTATTATATT
Statistics
Matches: 127, Mismatches: 14, Indels: 38
0.71 0.08 0.21
Matches are distributed among these distances:
68 14 0.11
69 11 0.09
70 16 0.13
71 3 0.02
72 15 0.12
73 14 0.11
74 16 0.13
75 16 0.13
76 8 0.06
77 1 0.01
79 8 0.06
80 5 0.04
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.59
Consensus pattern (77 bp):
TTATTTTAATATTAGTGTATATTTTATTATATATGTATATGTATATATATTTATAATAGTATTAT
TTTTTAATTACT
Found at i:67475882 original size:29 final size:30
Alignment explanation
Indices: 67475832--67475911 Score: 74
Period size: 29 Copynumber: 2.6 Consensus size: 30
67475822 TAATTACTTT
*
67475832 ATTTTAATATTTTTATTATATTA-TATTTG
1 ATTTTAATATTTTTAATATATTACTATTTG
* *
67475861 ATTTTTATA-TTTTAATACTATTACTATTATT
1 ATTTTAATATTTTTAATA-TATTACTATT-TG
* *
67475892 ATTATTATTATTATTAATAT
1 ATT-TTAATATTTTTAATAT
67475912 TAGTGTATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
28 7 0.17
29 13 0.32
30 4 0.10
31 4 0.10
32 5 0.12
33 7 0.17
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (30 bp):
ATTTTAATATTTTTAATATATTACTATTTG
Found at i:67475893 original size:3 final size:3
Alignment explanation
Indices: 67475830--67475913 Score: 54
Period size: 3 Copynumber: 30.0 Consensus size: 3
67475820 TTTAATTACT
* * * *
67475830 TTA TT- TTA ATA TTT TTA TTA -TA TTA -TA TT- TGA TTT TTA -TA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
67475872 TTA ATA CTA TTA CTA TTA TTA TTA TTA TTA TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
67475914 GTGTATATTT
Statistics
Matches: 60, Mismatches: 15, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
2 11 0.18
3 49 0.82
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:67475897 original size:283 final size:281
Alignment explanation
Indices: 67475321--67476008 Score: 1085
Period size: 283 Copynumber: 2.5 Consensus size: 281
67475311 TATTTATTTT
* *
67475321 TTACTTTTATTATTATTATTATTATTATTAGTTTATATTTTTATTGTATATGTATATGTATATAT
1 TTACTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATAT
67475386 ATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTT
66 ATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTT
*
67475451 TTGTATTTCAATATTATTACTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATG
131 TTGTATTTCAATATTATTA-TATTATTA-TATTATTAGTGTATATTTTTATTATATATGTATATG
*
67475516 TATATATATTTATACATAGTATTATTTTTTAATTGCTTTATTTTAATATTTTTATTATATTATAT
194 TATATATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATAT
* * *
67475581 TTGCTTTTTGTATTTCAATATTA
259 TTGATTTTTATATTTAAATATTA
*
67475604 TTACTATTATTATTATTATTATTATTATTAGTGTATATCTTTATTGTATATGTATATGTATATAT
1 TTACTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATAT
* *
67475669 ATTTATACATAGTATTATTTTTTAATTATTTTATTTTAATATTTTTATTATATTATATGTGCCTT
66 ATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTT
67475734 TTGTATTTCAATATTA-T-TATTATTA-A-TATTAGTGTATA-TTTTATTATATATGTATATGTA
131 TTGTATTTCAATATTATTATATTATTATATTATTAGTGTATATTTTTATTATATATGTATATGTA
67475794 TATATATTTATACATAGTATTATTTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATT
196 TATATATTTATACATAGTATTA-TTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATT
* *
67475859 TGATTTTTATATTTTAATACTA
260 TGATTTTTATATTTAAATATTA
67475881 TTACTATTATTATTATTATTATTATTAATATTAGTGTATATTTTTA-T-TATA---A-ATGTATA
1 TTACTATTATTATTATTATTATTA-T--TATTAGTGTATATTTTTATTGTATATGTATATGTATA
* * * *
67475940 TATATTTATATATAGTACTA-TTTTTAATTACTTTATTTTAACATTATTATTATATTATATTTGC
63 TATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGC
*
67476004 TTTTT
128 CTTTT
67476009 TTTGTGTATT
Statistics
Matches: 382, Mismatches: 19, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
273 44 0.12
274 25 0.07
275 1 0.00
276 43 0.11
277 95 0.25
278 6 0.02
279 1 0.00
280 25 0.07
282 1 0.00
283 141 0.37
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (281 bp):
TTACTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATAT
ATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTT
TTGTATTTCAATATTATTATATTATTATATTATTAGTGTATATTTTTATTATATATGTATATGTA
TATATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTT
GATTTTTATATTTAAATATTA
Found at i:67476082 original size:144 final size:143
Alignment explanation
Indices: 67475745--67476048 Score: 328
Period size: 142 Copynumber: 2.1 Consensus size: 143
67475735 TGTATTTCAA
* * * *
67475745 TATTATTATTATTAATATTAGTGTATATTTTATTATATATGTATATGTATATATATTTATACATA
1 TATTATTATCATTAATATTAGTGTATA---CA-TATA-ATATAAATGTATATATATTTATACATA
* * *
67475810 GTATTATTTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGATTTTTATATTTTA
61 GTACTA-TTTTTTAATTACTTTATTTTAACATTATTATTATATTATATTTGATTTTTATATTTTA
* *
67475875 ATACTATTACTATTATTAT
125 ATACTATTACTATTACTAG
* ** * * *
67475894 TATTATTATTATTAATATTAGTGTATATTTTTATTATAAATGTATATATATTTATATATAGTACT
1 TATTATTATCATTAATATTAGTGTATACATATAATATAAATGTATATATATTTATACATAGTACT
* * *
67475959 A-TTTTTAATTACTTTATTTTAACATTATTATTATATTATATTTGCTTTTT-T-TTGTGTATTTC
66 ATTTTTTAATTACTTTATTTTAACATTATTATTATATTATATTTGATTTTTATATT-T-TAATAC
* *
67476021 -ATTATTATTGCTAG
129 TATTACTATTACTAG
67476035 TATTATTATCATTA
1 TATTATTATCATTA
67476049 TCATCATTGT
Statistics
Matches: 136, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
140 2 0.01
141 25 0.18
142 50 0.37
144 28 0.21
145 3 0.02
146 1 0.01
149 27 0.20
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (143 bp):
TATTATTATCATTAATATTAGTGTATACATATAATATAAATGTATATATATTTATACATAGTACT
ATTTTTTAATTACTTTATTTTAACATTATTATTATATTATATTTGATTTTTATATTTTAATACTA
TTACTATTACTAG
Found at i:67488245 original size:152 final size:152
Alignment explanation
Indices: 67488049--67489188 Score: 1326
Period size: 152 Copynumber: 7.4 Consensus size: 152
67488039 GGTATCCTGA
* * **
67488049 TATTTTTA-TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGT
1 TATTTTTAGTTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAAT
* * *
67488113 CACACGCCGAGGTATTTTCAATTTACGTTTCAAAAAAATCAACTCATATTGTGAGATGTGAGTTG
66 CACACGCTGAGGTATTTTCAATTTACGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
67488178 AGCCTCAGGTCACACGCTGAGG
131 AGCCTCAGGTCACACGCTGAGG
* *
67488200 TATTTTTAGTCTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAT
1 TATTTTTAGTTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAAT
* * * *
67488265 CACGCACTAAGGTATTTTCAATTTATGTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
66 CACACGCTGAGGTATTTTCAATTTACGTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGT
* *
67488330 TGAGCCTCAAGTCACATGCTGAGG
129 TGAGCCTCAGGTCACACGCTGAGG
* * *
67488354 TATTTTTAGTTTCTGTTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAAT
1 TATTTTTAGTTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAAT
* * *
67488419 CACACACT-AAGTATTTTCAATTTACGTTTCAAAAAAAAATCAACTCATATTGAGA-AGGTGAGT
66 CACACGCTGAGGTATTTTCAATTTACGTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGT
67488482 TGAGCCTC-GAGTCACACGCTGAGG
129 TGAGCCTCAG-GTCACACGCTGAGG
* * *
67488506 TATTTTTAGTCTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAT
1 TATTTTTAGTTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAAT
* * *
67488571 CACGCACTGAGATATTTTCAATTTACGTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
66 CACACGCTGAGGTATTTTCAATTTACGTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAG
*
67488636 TTGAGCCTC-GAGTCACACGTTGAGG
128 TTGAGCCTCAG-GTCACACGCTGAGG
* * * * *
67488661 TAATTTTAGTTTCTATTTTTCAAAAAAAGTCAACTCTTATTACGAGAGGTGAGTTGACCCTCGGA
1 TATTTTTAGTTTCTATTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAA
* * * *
67488726 TCACACGCTGAGGTATTTTTAGTCT-CTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAA
65 TCACACGCTGAGGTATTTTCAATTTAC-G--TTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
** * * *
67488790 GTTGAGCCTCAAATCACGCACTGAGA
127 GTTGAGCCTCAGGTCACACGCTGAGG
* * **
67488816 TATTTTCA-ATT-TACGTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TATTTTTAGTTTCTATTTTTC----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
** * * ** *
67488879 GGGTCACACGTTGAGGTAATTTT-AGTTTCTATTTTTCAAAAAAAGTCAACTCATATTACGAGAG
62 GAATCACACGCTGAGGT-ATTTTCA-ATT-TACGTTTCAAAAAAA-TCAACTCATATTGCGAGAG
* * *
67488943 GTGAGTTGACCCTCGGGTCACACGTTGAGG
123 GTGAGTTGAGCCTCAGGTCACACGCTGAGG
* * * *
67488973 TATTTTTAGTTTCTATCTTTCAAAAAAAGTCAACTCATATTACGAGAGGTGAGTTGACCCTCGAT
1 TATTTTTAGTTTCTATTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAA
* * * *
67489038 TCACACGCTGAGGTATCTTCAACTTATGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
65 TCACACGCTGAGGTATTTTCAATTTACGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* ***
67489103 GAGCCTCAGATCACGTACTGAGG
130 GAGCCTCAGGTCACACGCTGAGG
* * * * * *
67489126 TATTTTTAATTTATGTTTTTTTCAAAAAAAATCGACTCATTTTGCGAGAAGTGAGTTGAGCCT
1 TATTTTT-AGTT-TCTATTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
67489189 TTTAGTCTCT
Statistics
Matches: 854, Mismatches: 107, Indels: 52
0.84 0.11 0.05
Matches are distributed among these distances:
151 8 0.01
152 175 0.20
153 118 0.14
154 163 0.19
155 157 0.18
156 161 0.19
157 59 0.07
158 7 0.01
159 6 0.01
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (152 bp):
TATTTTTAGTTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAAT
CACACGCTGAGGTATTTTCAATTTACGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTCAGGTCACACGCTGAGG
Found at i:67488256 original size:77 final size:76
Alignment explanation
Indices: 67488049--67489188 Score: 1172
Period size: 77 Copynumber: 14.8 Consensus size: 76
67488039 GGTATCCTGA
* * * *
67488049 TATTTTTATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGTC
1 TATTTTTAGTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
*
67488114 ACACGCCGAGG
66 ACACGCTGAGG
* * ** * *
67488125 TATTTTCAATT-TACGTTTCAAAAAAATCAACTCATATTGTGAGATGTGAGTTGAGCCTCAGGTC
1 TATTTTTAGTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
67488189 ACACGCTGAGG
66 ACACGCTGAGG
**
67488200 TATTTTTAGTCTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAT
1 TATTTTTAGT-TCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
* * *
67488265 CACGCACTAAGG
65 CACACGCTGAGG
* * * *
67488277 TATTTTCAATT-TATGTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
1 TATTTTTAGTTCTATTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
67488341 TCACATGCTGAGG
64 TCACACGCTGAGG
* * **
67488354 TATTTTTAGTTTCTGTTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAAT
1 TATTTTTAG-TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
* *
67488419 CACACACT-AAG
65 CACACGCTGAGG
* * ** *
67488430 TATTTTCAATT-TACGTTTCAAAAAAAAATCAACTCATATTGAGA-AGGTGAGTTGAGCCTC-GA
1 TATTTTTAGTTCTATTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-
67488492 GTCACACGCTGAGG
63 GTCACACGCTGAGG
* **
67488506 TATTTTTAGTCTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAT
1 TATTTTTAGT-TCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
* * *
67488571 CACGCACTGAGA
65 CACACGCTGAGG
* * **
67488583 TATTTTCAATT-TACGTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G
1 TATTTTTAGTTCTATTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
67488646 AGTCACACGTTGAGG
63 -GTCACACGCTGAGG
* * * *
67488661 TAATTTTAGTTTCTATTTTTCAAAAAAAGTCAACTCTTATTACGAGAGGTGAGTTGACCCTC-GG
1 TATTTTTAG-TTCTATTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
67488725 ATCACACGCTGAGG
64 -TCACACGCTGAGG
* * **
67488739 TATTTTTAGTCTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAAT
1 TATTTTTAGT-TCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
* * *
67488804 CACGCACTGAGA
65 CACACGCTGAGG
* * ** *
67488816 TATTTTCAATT-TACGTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
1 TATTTTTAGTTCTATTTTTC----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
67488880 GGTCACACGTTGAGG
62 GGTCACACGCTGAGG
* * * *
67488895 TAATTTTAGTTTCTATTTTTCAAAAAAAGTCAACTCATATTACGAGAGGTGAGTTGACCCTCGGG
1 TATTTTTAG-TTCTATTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
67488960 TCACACGTTGAGG
64 TCACACGCTGAGG
* * *
67488973 TATTTTTAGTTTCTATCTTTCAAAAAAAGTCAACTCATATTACGAGAGGTGAGTTGACCCTC-GA
1 TATTTTTAG-TTCTATTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-
*
67489037 TTCACACGCTGAGG
63 GTCACACGCTGAGG
* * ** * * *
67489051 TATCTTCAACT-TATGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
1 TATTTTTAGTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
***
67489115 ACGTACTGAGG
66 ACACGCTGAGG
* * * *
67489126 TATTTTTAATT-TATGTTTTTTTCAAAAAAAATCGACTCATTTTGCGAGAAGTGAGTTGAGCCT
1 TATTTTTAGTTCTA----TTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
67489189 TTTAGTCTCT
Statistics
Matches: 891, Mismatches: 135, Indels: 72
0.81 0.12 0.07
Matches are distributed among these distances:
74 5 0.01
75 158 0.18
76 89 0.10
77 269 0.30
78 254 0.29
79 66 0.07
80 44 0.05
81 6 0.01
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (76 bp):
TATTTTTAGTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
ACACGCTGAGG
Found at i:67489812 original size:24 final size:24
Alignment explanation
Indices: 67489785--67489866 Score: 68
Period size: 24 Copynumber: 3.5 Consensus size: 24
67489775 TATTTTAACC
*
67489785 TAAACCCCAA-ACCCAACTATCCAT
1 TAAAACCCAATACCCAA-TATCCAT
*
67489809 TAAAACCCAATATCCAATATCC--
1 TAAAACCCAATACCCAATATCCAT
*
67489831 -AAAACCCAA-ATCCCTAA-ACCCAT
1 TAAAACCCAATA-CCC-AATATCCAT
67489854 TAAAACCCAATAC
1 TAAAACCCAATAC
67489867 TCAAAACCCC
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
20 1 0.02
21 14 0.30
22 2 0.04
24 24 0.51
25 6 0.13
ACGTcount: A:0.46, C:0.37, G:0.00, T:0.17
Consensus pattern (24 bp):
TAAAACCCAATACCCAATATCCAT
Found at i:67490976 original size:3 final size:3
Alignment explanation
Indices: 67490968--67490997 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
67490958 TTTATTACGT
67490968 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
67490998 GTGTATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:67491122 original size:137 final size:137
Alignment explanation
Indices: 67490972--67491904 Score: 876
Period size: 137 Copynumber: 6.9 Consensus size: 137
67490962 TTACGTTTAT
67490972 TATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTT
1 TATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTT
67491037 ATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTTTTGT
66 ATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTTTTGT
67491102 ATTTCAA
131 ATTTCAA
*
67491109 TATTATTACTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTT
1 TATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTT
*
67491174 ATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGT
66 ATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTTTTGT
67491239 ATTTCAA
131 ATTTCAA
* * * *
67491246 TATTATTATTATTATTATTATTATTA-T-TATTATTATTAGTGTATAT-T-T-TAT-TATATATG
1 TATTATTATTATTATTATTATTATTAGTGTA-TATTTTTATTGTATATGTATATGTATATATATT
* * * * * * * *
67491305 TAT--AT-GTA-TATATGTT-ATTA--TTAGTGT-ATATTTTTATTGTATATGTATATG--TATA
65 TATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATAT-TATATTTGCCT-TT
* *
67491360 TATATTTATACA
128 TGTATTT-CA-A
* * * * * * * * * *
67491372 TAATATTATT-TT-TTAATTACT-TTATTTTAATATTTTTATTATAT-TATATTTGCTTTTTGTA
1 TATTATTATTATTATT-ATTATTATTAGTGT-ATATTTTTATTGTATATGTATATG-TATATATA
** * * *
67491433 -TT-T-CA-A-TATTA-TTACT-ATTA--TTA--TTATTATTATTA-T-TATTAT-TATT--ATT
63 TTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATAT-TTGCCTT
* *
67491482 AT-TA-TT-AT
127 TTGTATTTCAA
67491490 TATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTT
1 TATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTT
*
67491555 ATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGT
66 ATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTTTTGT
67491620 ATTTCAATATTATTATTA
131 ATTTC---------A--A
* *
67491638 TTATTATTATTATTATTATTATTATTAGTGTATA-TTTTATTATATATGTATATGTATATATGTT
1 -TATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATT
*
67491702 TATACATAGTATTATTTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTT
65 TATACATAGTATTA-TTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTTTT
*
67491767 ATATTTCAA
129 GTATTTCAA
* * * *
67491776 TACTATTACTATTATTATTATTATTA-T-TATTATTAGTGTATATT-TTTATTATATATGTATAT
1 TATTATTATTATTATTATTATTATTAGTGTA-TATT--T-T-TATTGTATA-TGTATATGTATAT
* * * * *
67491838 ATA-TTATATATAGTACTA-TTTTTAATTACTTTATTTTAACATTATTATTATATTATATTTGCT
60 ATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCC
67491901 TTTT
125 TTTT
67491905 TTTGTGTATT
Statistics
Matches: 666, Mismatches: 67, Indels: 125
0.78 0.08 0.15
Matches are distributed among these distances:
118 9 0.01
119 27 0.04
120 15 0.02
121 3 0.00
122 4 0.01
123 6 0.01
124 35 0.05
125 27 0.04
126 29 0.04
127 13 0.02
128 22 0.03
129 8 0.01
130 16 0.02
131 1 0.00
132 17 0.03
133 3 0.00
134 4 0.01
135 7 0.01
136 20 0.03
137 185 0.28
138 48 0.07
139 1 0.00
140 18 0.03
141 18 0.03
146 1 0.00
148 42 0.06
149 87 0.13
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (137 bp):
TATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTT
ATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCCTTTTGT
ATTTCAA
Found at i:67491339 original size:193 final size:193
Alignment explanation
Indices: 67491126--67491701 Score: 1033
Period size: 193 Copynumber: 3.0 Consensus size: 193
67491116 ACTATTATTA
67491126 TTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAGTATTATTTT
1 TTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAGTATTATTTT
67491191 TTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTATTTCAATATTATTATT
66 TTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTATTTCAATATTATTATT
67491256 ATTATTATTATTATTATTATTATTATTAGTGTATATTTTATTATATATGTATATGTATATATG
131 ATTATTATTATTATTATTATTATTATTAGTGTATATTTTATTATATATGTATATGTATATATG
*
67491319 TTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAATATTATTTT
1 TTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAGTATTATTTT
* * *
67491384 TTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTATTTCAATATTATTACT
66 TTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTATTTCAATATTATTATT
67491449 ATTATTATTATTATTATTATTATTATTA-T-TATTATTATTATTAT-TAT-TATTAT-TAT-TA-
131 ATTATTATTATTATTATTATTATTATTAGTGTA-TATT-TTATTATATATGTA-TATGTATATAT
67491507 -
193 G
67491507 TTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAGTATTATTTT
1 TTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAGTATTATTTT
67491572 TTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTATTTCAATATTATTATT
66 TTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTATTTCAATATTATTATT
67491637 ATTATTATTATTATTATTATTATTATTAGTGTATATTTTATTATATATGTATATGTATATATG
131 ATTATTATTATTATTATTATTATTATTAGTGTATATTTTATTATATATGTATATGTATATATG
67491700 TT
1 TT
67491702 TATACATAGT
Statistics
Matches: 364, Mismatches: 8, Indels: 22
0.92 0.02 0.06
Matches are distributed among these distances:
188 161 0.44
189 11 0.03
190 9 0.02
191 9 0.02
192 11 0.03
193 163 0.45
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (193 bp):
TTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAGTATTATTTT
TTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTATTTCAATATTATTATT
ATTATTATTATTATTATTATTATTATTAGTGTATATTTTATTATATATGTATATGTATATATG
Found at i:67491551 original size:188 final size:187
Alignment explanation
Indices: 67491109--67491690 Score: 1006
Period size: 188 Copynumber: 3.1 Consensus size: 187
67491099 TGTATTTCAA
67491109 TATTATTACTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTT
1 TATTATTA-TATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTT
67491174 ATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGT
65 ATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGT
67491239 ATTTCAATATTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTAT
130 ATTTCAATATTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTAT
67491297 TATATATGTATATGTATATATGTTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATA
1 TAT-TAT-TATAT-TAT-TA--TTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATA
* * *
67491362 TATTTATACATAATATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTT
60 TATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCT
*
67491427 TTTGTATTTCAATATTATTACTATTATTATTATTATTATTATTATTATTA-T-TATTATTATTAT
125 TTTGTATTTCAATATTATTATTATTATTATTATTATTATTATTATTATTAGTGTA-TATT-TTAT
67491490 TATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTT
1 TATTATTA-TATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTT
67491555 ATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGT
65 ATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGT
67491620 ATTTCAATATTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTAT
130 ATTTCAATATTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTAT
67491678 TATATATGTATAT
1 TAT-TAT-TATAT
67491691 GTATATATGT
Statistics
Matches: 373, Mismatches: 8, Indels: 25
0.92 0.02 0.06
Matches are distributed among these distances:
188 164 0.44
189 17 0.05
190 11 0.03
191 9 0.02
192 11 0.03
193 161 0.43
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (187 bp):
TATTATTATATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTA
TACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTA
TTTCAATATTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTAT
Found at i:67491670 original size:149 final size:147
Alignment explanation
Indices: 67491478--67491904 Score: 658
Period size: 149 Copynumber: 2.9 Consensus size: 147
67491468 TTATTATTAT
67491478 TATTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATAT
1 TATTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTTATT-TATATGTATAT
67491543 GTATATATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATA
65 GTATATATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATA
* * *
67491608 TGTGCCTTTTGTATTTCAA
130 TTTGCTTTTTATATTTC-A
67491627 TATTATTATTATTATTATTATTATTATTATTATTATTAGTGTATA-TTTTATTATATATGTATAT
1 TATTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTTATT-TATATGTATAT
*
67491691 GTATATATGTTTATACATAGTATTATTTTTTTAATTACTTTATTTTAATATTTTTATTATATTAT
65 GTATATATATTTATACATAGTATTA-TTTTTTAATTACTTTATTTTAATATTTTTATTATATTAT
67491756 ATTTGCTTTTTATATTTCA
129 ATTTGCTTTTTATATTTCA
* *
67491775 -A-TACTATTACTATTATTATTATTATTATTATTATTAGTGTATATTTTTA--T-TA--TATATG
1 TATTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTTATATGTATATG
* * * *
67491833 TATATATA-TTATATATAGTACTA-TTTTTAATTACTTTATTTTAACATTATTATTATATTATAT
66 TATATATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATAT
67491896 TTGCTTTTT
131 TTGCTTTTT
67491905 TTTGTGTATT
Statistics
Matches: 264, Mismatches: 12, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
138 47 0.18
140 13 0.05
141 13 0.05
143 2 0.01
144 1 0.00
146 40 0.15
147 6 0.02
148 43 0.16
149 99 0.38
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.61
Consensus pattern (147 bp):
TATTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTTATATGTATATG
TATATATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATAT
TTGCTTTTTATATTTCA
Found at i:67491827 original size:3 final size:3
Alignment explanation
Indices: 67491246--67491810 Score: 161
Period size: 3 Copynumber: 189.7 Consensus size: 3
67491236 TGTATTTCAA
67491246 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAGT GTA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T -TAT TAT
*
67491292 T-T TAT TAT ATAT GTA- TAT GTA- TAT ATGT TAT TAT TAGT GTA- TAT
1 TAT TAT TAT -TAT -TAT TAT -TAT TAT -TAT TAT TAT TA-T -TAT TAT
* * * *
67491336 TTT TAT TGT ATAT GTA- TAT GTA- TAT ATAT T-T ATACA TAA TAT TAT
1 TAT TAT TAT -TAT -TAT TAT -TAT TAT -TAT TAT -TA-T TAT TAT TAT
* * *
67491381 T-T T-T TAAT TAC T-T TAT T-T TAA TAT TTT TAT TA- TAT TA- TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
** * * *
67491421 T-T GCT T-T T-T GTAT T-T CAA TAT TAT TAC TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
67491463 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
67491511 TAT TAGT GTA- TAT TTT TAT TGT ATAT GTA- TAT GTA- TAT ATAT T-T
1 TAT TA-T -TAT TAT TAT TAT TAT -TAT -TAT TAT -TAT TAT -TAT TAT
* * * * *
67491555 ATACA TAG TAT TAT T-T T-T TAAT TAC T-T TAT T-T TAA TAT TTT TAT
1 -TA-T TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
67491599 TA- TAT TA- TAT GTGCCT TTT GTAT T-T CAA TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT -T--AT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
67491645 TAT TAT TAT TAT TAT TAT TAGT GTA- TAT T-T TAT TAT ATAT GTA- TAT
1 TAT TAT TAT TAT TAT TAT TA-T -TAT TAT TAT TAT TAT -TAT -TAT TAT
* * * *
67491691 GTAT ATAT GT-T TA- TACA TAG TAT TAT T-T TTT TAAT TAC T-T TAT
1 -TAT -TAT -TAT TAT TA-T TAT TAT TAT TAT TAT T-AT TAT TAT TAT
* * ** * * *
67491734 T-T TAA TAT TTT TAT TA- TAT TA- TAT T-T GCT TTT TA- TAT T-T CAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
67491776 TAC TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
67491811 GTGTATATTT
Statistics
Matches: 423, Mismatches: 68, Indels: 142
0.67 0.11 0.22
Matches are distributed among these distances:
2 72 0.17
3 282 0.67
4 59 0.14
5 9 0.02
6 1 0.00
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:67491884 original size:381 final size:381
Alignment explanation
Indices: 67491118--67491893 Score: 1064
Period size: 381 Copynumber: 2.0 Consensus size: 381
67491108 ATATTATTAC
67491118 TATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAGT
1 TATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAGT
67491183 ATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTATTTCAATA
66 ATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTATTTCAATA
67491248 TTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTATTATATATGTATATGTA
131 TTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTATTATATATGTATATGTA
* * *
67491313 TATATGTTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAATAT
196 TATATGTTATTAATAGTATATATTTTTATTATATATGTATATGTATATATATTTATACATAATAT
** * * * **
67491378 TATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTATTTCAATATT
261 TATTTTTTAATTACAATATATTAATATTATTATTATATTATATTTGATTAGTGTATTTCAATATT
* * * **
67491443 ATTACTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAT
326 ATTACTATTATTATTATTATTATTAGTACTATTATTATTACTATTATTATTAACAT
67491499 TATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAGT
1 TATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAGT
67491564 ATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTATTTCAATA
66 ATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTATTTCAATA
67491629 TTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTATTATATATGTATATGTA
131 TTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTATTATATATGTATATGTA
* * * *
67491694 TATATGTT-TATACATAGTAT-TATTTTT-TTA-ATTACTTTAT-TTTA-ATATTTTTATTATAT
196 TATATGTTAT-TA-ATAGTATATATTTTTATTATA-TA-TGTATATGTATATATATTTA-TACAT
* * *
67491753 TATATT-TGCTTTTTATATTTCAATACTATTACTATTATTATTATTATTAT-TATT-ATTAGTGT
256 AATATTAT--TTTTTA-ATTACAATA-TATTAATATTATTATTA-TATTATAT-TTGATTAGTGT
** *
67491815 ATATT-TTTATTA-TA-TATGTA-TATATATTA-TATATAGTACTATTTTTAATTACT-TTATT-
315 AT-TTCAATATTATTACTAT-TATTAT-TATTATTAT-TAGTACTATTATT-ATTACTATTATTA
67491873 TTAACAT
375 TTAACAT
67491880 TATTATTA-TATTAT
1 TATTATTATTATTAT
67491894 ATTTGCTTTT
Statistics
Matches: 354, Mismatches: 25, Indels: 33
0.86 0.06 0.08
Matches are distributed among these distances:
379 10 0.03
380 23 0.06
381 244 0.69
382 35 0.10
383 32 0.09
384 10 0.03
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.60
Consensus pattern (381 bp):
TATTATTATTATTATTAGTGTATATTTTTATTGTATATGTATATGTATATATATTTATACATAGT
ATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGTGCCTTTTGTATTTCAATA
TTATTATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTATTATATATGTATATGTA
TATATGTTATTAATAGTATATATTTTTATTATATATGTATATGTATATATATTTATACATAATAT
TATTTTTTAATTACAATATATTAATATTATTATTATATTATATTTGATTAGTGTATTTCAATATT
ATTACTATTATTATTATTATTATTAGTACTATTATTATTACTATTATTATTAACAT
Found at i:67494781 original size:31 final size:31
Alignment explanation
Indices: 67494746--67494918 Score: 183
Period size: 31 Copynumber: 5.6 Consensus size: 31
67494736 GTACAATGTA
* *
67494746 AAAAGTGGTAGCTTTGGCTACCTAATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
*
67494777 AAAAGTGGTAGCTTCGGCTTCCTGATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
* * *
67494808 AAAAGTAGTAGCTTCGGCTACTTGATTAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
* * * *
67494839 AAAAATGGTAGCTCCAGTTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
* * *
67494870 AATAGTGATAGCTTCGGCTATC-GA--ATGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCA-GTG
67494899 AAAAG-GGATAGCTTCGGCTA
1 AAAAGTGG-TAGCTTCGGCTA
67494919 TCAAATTTGG
Statistics
Matches: 117, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
28 2 0.02
29 19 0.16
30 2 0.02
31 94 0.80
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
Found at i:67494932 original size:29 final size:29
Alignment explanation
Indices: 67494867--67494933 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
67494857 TACCTGATCA
* * *
67494867 GTGAATAGTGATAGCTTCGGCTATCGAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
67494896 GTGAAAAGGGATAGCTTCGGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
* *
67494925 TTGGAAAGG
1 GTGAAAAGG
67494934 AAAGGTATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCGGCTATCAAAT
Found at i:67494960 original size:33 final size:33
Alignment explanation
Indices: 67494923--67495085 Score: 245
Period size: 33 Copynumber: 4.9 Consensus size: 33
67494913 CGGCTATCAA
* * *
67494923 ATTTGGAAAGGAAAGGTATATTTTGTGTATACT
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* ** *
67494956 ATTTGAAAATGTTAGGTATACTTTGTATATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
*
67494989 ATTTGAAAAGGAAATGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
*
67495022 ATTTGAAAAGGAAATGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
67495055 ATTTGAAAAGGAAAGGTATACTTTGTGTATA
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATA
67495086 TGTGACAGCC
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 117 1.00
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.38
Consensus pattern (33 bp):
ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
Found at i:67497937 original size:33 final size:33
Alignment explanation
Indices: 67497894--67497967 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 33
67497884 GAGTGTTACA
*
67497894 GTATACCATATGAAAAGGGAAGGTATACTTTGT
1 GTATACCATATGAAAAGGAAAGGTATACTTTGT
*
67497927 GTATATCATATGAAAAGGAAAGGTATACTTTGT
1 GTATACCATATGAAAAGGAAAGGTATACTTTGT
*
67497960 GTGTACCA
1 GTATACCA
67497968 CTCGGAAAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.31
Consensus pattern (33 bp):
GTATACCATATGAAAAGGAAAGGTATACTTTGT
Found at i:67503763 original size:16 final size:16
Alignment explanation
Indices: 67503727--67503764 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
67503717 AATTATATTC
67503727 AATAATTTTATAGATT
1 AATAATTTTATAGATT
*
67503743 TATAATTTTATTA-ATT
1 AATAATTTTA-TAGATT
67503759 AATAAT
1 AATAAT
67503765 ATATTATGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 17 0.89
17 2 0.11
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
AATAATTTTATAGATT
Found at i:67503892 original size:30 final size:30
Alignment explanation
Indices: 67503832--67503895 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
67503822 CACATTAATA
* *
67503832 TATTATCATATTAACTAATATTAATTTTAT
1 TATTATCACATTAACTAATATTAATATTAT
67503862 TATTATCACA-TAA-TAATATTAATAAATTAT
1 TATTATCACATTAACTAATATTAAT--ATTAT
67503892 TATT
1 TATT
67503896 CTAAATTCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 10 0.33
29 3 0.10
30 17 0.57
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (30 bp):
TATTATCACATTAACTAATATTAATATTAT
Found at i:67504285 original size:16 final size:16
Alignment explanation
Indices: 67504255--67504301 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
67504245 AATAATGCAA
* *
67504255 AATAAGATTATTTAA-
1 AATAATATTAATTAAC
67504270 AATAATAATTAATTAAC
1 AATAAT-ATTAATTAAC
*
67504287 ATTAATATTAATTAA
1 AATAATATTAATTAA
67504302 GTGATAGTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 5 0.19
16 17 0.63
17 5 0.19
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (16 bp):
AATAATATTAATTAAC
Found at i:67506312 original size:6 final size:6
Alignment explanation
Indices: 67506303--67506334 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
67506293 TTTAAATTTT
67506303 ATATTA ATATTA ATATTA ATATTA ATATTA AT
1 ATATTA ATATTA ATATTA ATATTA ATATTA AT
67506335 TGAATCTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATATTA
Found at i:67506315 original size:18 final size:19
Alignment explanation
Indices: 67506294--67506333 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
67506284 AATAATAAAT
*
67506294 TTAAAT-TTTATATTAATA
1 TTAAATATTAATATTAATA
67506312 TT-AATATTAATATTAATA
1 TTAAATATTAATATTAATA
67506330 TTAA
1 TTAA
67506334 TTGAATCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 3 0.16
18 15 0.79
19 1 0.05
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAAATATTAATATTAATA
Found at i:67507324 original size:18 final size:18
Alignment explanation
Indices: 67507298--67507346 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
67507288 AATTAATTTT
*
67507298 AAAATTATAAAAATATTC
1 AAAAATATAAAAATATTC
*
67507316 AAAAATAT-AAAATGTTC
1 AAAAATATAAAAATATTC
*
67507333 ATAAAATTTAAAAA
1 A-AAAATATAAAAA
67507347 AAGTAGCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 9 0.35
18 13 0.50
19 4 0.15
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (18 bp):
AAAAATATAAAAATATTC
Found at i:67509107 original size:28 final size:28
Alignment explanation
Indices: 67509049--67509138 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 28
67509039 TAAAAAATAT
* *
67509049 AATTATTTAAAAAATAAAACATGTTAGA
1 AATTATTTAAAAAATAAAAAATATTAGA
*
67509077 AATTTTTTAAAAAATAAAAAAATATTA-A
1 AATTATTTAAAAAAT-AAAAAATATTAGA
* * *
67509105 AATATATATAAAATTATAAAAATTATTAGA
1 AAT-TATTTAAAA-AATAAAAAATATTAGA
67509135 AATT
1 AATT
67509139 TTACAATATT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
28 18 0.35
29 27 0.53
30 6 0.12
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (28 bp):
AATTATTTAAAAAATAAAAAATATTAGA
Found at i:67509628 original size:17 final size:17
Alignment explanation
Indices: 67509592--67509624 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
67509582 TAAAATTGAA
*
67509592 ATAATTAATAATAATAT
1 ATAATTAATAATAACAT
67509609 ATAATTAA-AATAACAT
1 ATAATTAATAATAACAT
67509625 TATATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
ATAATTAATAATAACAT
Found at i:67509895 original size:20 final size:18
Alignment explanation
Indices: 67509852--67509895 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
67509842 TTGTTTTTGT
*
67509852 AATTTTATATTTTTATTA
1 AATTTTATATTTTTAATA
*
67509870 AGTTTTATAATATTTTAATA
1 AATTTTAT-AT-TTTTAATA
67509890 AATTTT
1 AATTTT
67509896 TAAAGATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 7 0.33
19 2 0.10
20 12 0.57
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
AATTTTATATTTTTAATA
Found at i:67509896 original size:21 final size:20
Alignment explanation
Indices: 67509858--67509905 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
67509848 TTGTAATTTT
* *
67509858 ATATTTTTATTAAGTTTTATA
1 ATATTTTAATAAAGTTTTA-A
*
67509879 ATATTTTAATAAATTTTTAA
1 ATATTTTAATAAAGTTTTAA
*
67509899 AGATTTT
1 ATATTTT
67509906 TTAGATAATG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (20 bp):
ATATTTTAATAAAGTTTTAA
Found at i:67510344 original size:25 final size:25
Alignment explanation
Indices: 67510305--67510352 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
67510295 TAAACTTAAA
67510305 TAAGTAAAATGTCAT-TTGCTCCATT
1 TAAGTAAAATGTCATCTT-CTCCATT
67510330 TAAGT-AAATGATCATCTTCTCCA
1 TAAGTAAAATG-TCATCTTCTCCA
67510353 AAGAGTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 14 0.67
26 2 0.10
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (25 bp):
TAAGTAAAATGTCATCTTCTCCATT
Found at i:67510458 original size:19 final size:19
Alignment explanation
Indices: 67510436--67510472 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
67510426 TTAATCATAT
67510436 ATTTAA-TTATTTGTTTTAA
1 ATTTAATTTATTT-TTTTAA
67510455 ATTTAATTTATTTTTTTA
1 ATTTAATTTATTTTTTTA
67510473 GTTTTTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
ATTTAATTTATTTTTTTAA
Found at i:67511167 original size:23 final size:25
Alignment explanation
Indices: 67511125--67511174 Score: 77
Period size: 23 Copynumber: 2.1 Consensus size: 25
67511115 AATTAATTAT
67511125 TTTTTAAAATTAAAAAATATAAAAA
1 TTTTTAAAATTAAAAAATATAAAAA
*
67511150 TTTTTAAAA-T-AAAAATATTAAAA
1 TTTTTAAAATTAAAAAATATAAAAA
67511173 TT
1 TT
67511175 CTAAAAAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 14 0.58
24 1 0.04
25 9 0.38
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
TTTTTAAAATTAAAAAATATAAAAA
Found at i:67511181 original size:23 final size:23
Alignment explanation
Indices: 67511137--67511181 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
67511127 TTTAAAATTA
* *
67511137 AAAAATATAAAAATTTTTAAAAT
1 AAAAATATAAAAATTCTAAAAAT
*
67511160 AAAAATATTAAAATTCTAAAAA
1 AAAAATATAAAAATTCTAAAAA
67511182 GTATTTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAAATATAAAAATTCTAAAAAT
Found at i:67520873 original size:40 final size:40
Alignment explanation
Indices: 67520828--67520913 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
67520818 TCAAATACAT
67520828 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
* * * * * *
67520868 TTAAAACAATTCTTAAAACAATACACAAGTTAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
*
67520908 ATAAAA
1 TTAAAA
67520914 ATTAATTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.65, C:0.09, G:0.02, T:0.23
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
Found at i:67520956 original size:29 final size:27
Alignment explanation
Indices: 67520897--67520964 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
67520887 AATACACAAG
* *
67520897 TTAAAAATATAATAAAAATTAATTATA
1 TTAAAAATAAAATAAAAATTAAATATA
* *
67520924 TTAAAATTAAAATTAAAATATAAATATGA
1 TTAAAAATAAAATAAAAAT-TAAATAT-A
67520953 TTAAAAATAAAA
1 TTAAAAATAAAA
67520965 AATATATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 16 0.47
28 6 0.18
29 12 0.35
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (27 bp):
TTAAAAATAAAATAAAAATTAAATATA
Found at i:67520963 original size:23 final size:23
Alignment explanation
Indices: 67520929--67520973 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
67520919 TTATATTAAA
* *
67520929 ATTAAAATTAAAATATAAATATG
1 ATTAAAAATAAAAAATAAATATG
*
67520952 ATTAAAAATAAAAAATATATAT
1 ATTAAAAATAAAAAATAAATAT
67520974 TTAGTATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
ATTAAAAATAAAAAATAAATATG
Found at i:67524298 original size:76 final size:76
Alignment explanation
Indices: 67524211--67524401 Score: 238
Period size: 76 Copynumber: 2.5 Consensus size: 76
67524201 AAATAAACCA
* * * * * *
67524211 ACAATGTTTTGCGCCTAGCGCTAGTCGGATAAATCGACGATATCAAATGTGTGCCCAGTACAAAT
1 ACAATGATTTGCACCCAGCGCTAGTCGGATAAACCGACGATATCAAATGTATGCCCAGCACAAAT
*
67524276 CAGATAGACTG
66 CAGATAGACCG
* * * * *
67524287 ACAATGATTTGCACCCAGCACTAGTTGGATAAACCGACGATATCAAATGTATGCCTAGCACTAGT
1 ACAATGATTTGCACCCAGCGCTAGTCGGATAAACCGACGATATCAAATGTATGCCCAGCACAAAT
**
67524352 TGGATAGACCG
66 CAGATAGACCG
*
67524363 ACAATGATTTGCACCCAGCGCTAGTCAGATAAAACCGAC
1 ACAATGATTTGCACCCAGCGCTAGTCGGAT-AAACCGAC
67524402 AATTACATGC
Statistics
Matches: 97, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
76 89 0.92
77 8 0.08
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (76 bp):
ACAATGATTTGCACCCAGCGCTAGTCGGATAAACCGACGATATCAAATGTATGCCCAGCACAAAT
CAGATAGACCG
Found at i:67542630 original size:46 final size:45
Alignment explanation
Indices: 67542578--67542807 Score: 289
Period size: 46 Copynumber: 5.0 Consensus size: 45
67542568 GAGTGTGCTC
*
67542578 CCTGATAGAAAATGTGTAAGAGCATGGTTGAAAGATACCATGGCAA
1 CCTGATAG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
67542624 CCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
1 CCTGATA-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
67542670 CCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
1 CCTGATA-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
* ** ** *
67542716 CGTGACGGGGAAATGAATAAGACCATGGTTGAATGATACCATGGCAA
1 CCTGA--TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
* * * * * *
67542763 CATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CCTGATAG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
67542808 TCATGTCGAA
Statistics
Matches: 165, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
45 1 0.01
46 124 0.75
47 40 0.24
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (45 bp):
CCTGATAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
Found at i:67542776 original size:93 final size:92
Alignment explanation
Indices: 67542584--67542807 Score: 297
Period size: 93 Copynumber: 2.4 Consensus size: 92
67542574 GCTCCCTGAT
* * * **
67542584 AGAAAATGTGTAAGAGCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCAT
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGGAAATGAATAAGACCAT
* *
67542649 GGTTGAAAGATACCATGGCAACCTGAT
66 GGTTGAAAGATACCATGGCAACATGAC
* *
67542676 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACGGGGAAATGAATAAGACC
1 A-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-GAGGAAATGAATAAGACC
*
67542740 ATGGTTGAATGATACCATGGCAACATGAC
64 ATGGTTGAAAGATACCATGGCAACATGAC
* * * *
67542769 AGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
67542808 TCATGTCGAA
Statistics
Matches: 115, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
92 42 0.37
93 73 0.63
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.21
Consensus pattern (92 bp):
AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGGAAATGAATAAGACCAT
GGTTGAAAGATACCATGGCAACATGAC
Found at i:67545539 original size:6 final size:6
Alignment explanation
Indices: 67545525--67545557 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
67545515 AATTATATTA
*
67545525 AGGCAT AGGCCT AGGCCT AGGCCT AGGCCT AGG
1 AGGCCT AGGCCT AGGCCT AGGCCT AGGCCT AGG
67545558 ATCAGCAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.21, C:0.27, G:0.36, T:0.15
Consensus pattern (6 bp):
AGGCCT
Done.