Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 203 of 284
Found at i:67825341 original size:46 final size:46
Alignment explanation
Indices: 67825288--67825561 Score: 388
Period size: 46 Copynumber: 6.0 Consensus size: 46
67825278 AGTGTGCTCT
*
67825288 CTGATATGAAATGTGTAATACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
67825334 CTGATATGAAAAATGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
67825380 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCACC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
67825426 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
67825472 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATAGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
67825518 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGATACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
67825562 TCATGTCAAA
Statistics
Matches: 206, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.00
46 205 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:67834635 original size:53 final size:53
Alignment explanation
Indices: 67834494--67834644 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
67834484 ATAAGTGCGC
* **
67834494 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
67834547 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* * *
67834600 TCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
67834645 ACCGTGTAAG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:67843831 original size:15 final size:15
Alignment explanation
Indices: 67843813--67843843 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
67843803 ACTTAGTTGT
67843813 CCTTCCAAACATGAA
1 CCTTCCAAACATGAA
*
67843828 CCTTTCAAACATGAA
1 CCTTCCAAACATGAA
67843843 C
1 C
67843844 TCTCTAGCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.32, G:0.06, T:0.23
Consensus pattern (15 bp):
CCTTCCAAACATGAA
Found at i:67844226 original size:93 final size:94
Alignment explanation
Indices: 67844000--67844300 Score: 267
Period size: 93 Copynumber: 3.2 Consensus size: 94
67843990 AAATGTGTTT
* * ** * * *
67844000 TTTTAAT-ACTTTCAAAGGATCAGTTGAGTCCAAAACAAAACCAAGTTAAAGTACTTCCTCGTG-
1 TTTTAATGA-TTTCAAAGGATTAGTGGAGTCCAAAACAAAACCAAACTGAAGCACTTCCTCTTGA
* * * *
67844063 ATC-T-ATTTAGTGAAGATACTG-CGATGCGCC
65 ACCTTAATCTAGTGAAGATAGTGACG-T--GTC
* * * ** * *
67844093 TTTT-ATGCTTTCAAGGGATCAGCAGAGTCCAAAACAAAACCACACTGAAGCGCTTCCT-TATGA
1 TTTTAATGATTTCAAAGGATTAGTGGAGTCCAAAACAAAACCAAACTGAAGCACTTCCTCT-TGA
* *
67844156 ACCTTTATCTAGTGAAGAT-GTGATGTGTC
65 ACCTTAATCTAGTGAAGATAGTGACGTGTC
* *
67844185 TTTTAATGTTTTCAAAGGATTAGTGGAGTCCAAAACCAAACCAAACTGAAGCACTTCCTCTTGAA
1 TTTTAATGATTTCAAAGGATTAGTGGAGTCCAAAACAAAACCAAACTGAAGCACTTCCTCTTGAA
*
67844250 CCTTAATTTAGTGAAGATGCAGTGACGTGTC
66 CCTTAATCTAGTGAAGAT--AGTGACGTGTC
*
67844281 TTTTAATGATTTCAATGGAT
1 TTTTAATGATTTCAAAGGAT
67844301 CAACAGGGTC
Statistics
Matches: 168, Mismatches: 29, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
92 51 0.30
93 72 0.43
94 5 0.03
95 13 0.08
96 27 0.16
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (94 bp):
TTTTAATGATTTCAAAGGATTAGTGGAGTCCAAAACAAAACCAAACTGAAGCACTTCCTCTTGAA
CCTTAATCTAGTGAAGATAGTGACGTGTC
Found at i:67859755 original size:212 final size:212
Alignment explanation
Indices: 67859388--67859810 Score: 819
Period size: 212 Copynumber: 2.0 Consensus size: 212
67859378 TAAAGAAGAC
*
67859388 AATACCACTAGCGTTTGATGGCTCCAAAGCTGAAAAGATTAAACTGACCATTGACTTGATTCATG
1 AATACCACCAGCGTTTGATGGCTCCAAAGCTGAAAAGATTAAACTGACCATTGACTTGATTCATG
* *
67859453 CTAAGTTTATATGCTAAGAAAAGATGTTATAATTGTGTTCAGGAACACTAAATTTAGGATTATAT
66 CCAAGTTTATATGCTAAGAAAAGATGTTATAATTGTGTTCAGGAACACTAAATTCAGGATTATAT
67859518 CATTTTCAGATTCATTCAAATGCAACTTTTAAGACAGCTAATGTTAAGAACAGAAGCTGCAGTAA
131 CATTTTCAGATTCATTCAAATGCAACTTTTAAGACAGCTAATGTTAAGAACAGAAGCTGCAGTAA
67859583 CTTTCAAGTTCGAGTCT
196 CTTTCAAGTTCGAGTCT
67859600 AATACCACCAGCGTTTGATGGCTCCAAAGCTGAAAAGATTAAACTGACCATTGACTTGATTCATG
1 AATACCACCAGCGTTTGATGGCTCCAAAGCTGAAAAGATTAAACTGACCATTGACTTGATTCATG
67859665 CCAAGTTTATATGCTAAGAAAAGATGTTATAATTGTGTTCAGGAACACTAAATTCAGGATTATAT
66 CCAAGTTTATATGCTAAGAAAAGATGTTATAATTGTGTTCAGGAACACTAAATTCAGGATTATAT
67859730 CATTTTCAGATTCATTCAAATGCAACTTTTAAGACAGCTAATGTTAAGAACAGAAGCTGCAGTAA
131 CATTTTCAGATTCATTCAAATGCAACTTTTAAGACAGCTAATGTTAAGAACAGAAGCTGCAGTAA
67859795 CTTTCAAGTTCGAGTC
196 CTTTCAAGTTCGAGTC
67859811 ATTTGTTAGA
Statistics
Matches: 208, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
212 208 1.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (212 bp):
AATACCACCAGCGTTTGATGGCTCCAAAGCTGAAAAGATTAAACTGACCATTGACTTGATTCATG
CCAAGTTTATATGCTAAGAAAAGATGTTATAATTGTGTTCAGGAACACTAAATTCAGGATTATAT
CATTTTCAGATTCATTCAAATGCAACTTTTAAGACAGCTAATGTTAAGAACAGAAGCTGCAGTAA
CTTTCAAGTTCGAGTCT
Found at i:67865369 original size:14 final size:14
Alignment explanation
Indices: 67865350--67865379 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67865340 TATTTGACTG
67865350 TTAGTCCATCATTT
1 TTAGTCCATCATTT
*
67865364 TTAGTCCATTATTT
1 TTAGTCCATCATTT
67865378 TT
1 TT
67865380 GTGTCGTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.17, G:0.07, T:0.57
Consensus pattern (14 bp):
TTAGTCCATCATTT
Found at i:67865959 original size:132 final size:132
Alignment explanation
Indices: 67865716--67865966 Score: 344
Period size: 132 Copynumber: 1.9 Consensus size: 132
67865706 ATTATTCATT
* *
67865716 TAAAAACCTTTCAAAACGAAGGCGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
1 TAAAAACCTTTCAAAACGAAGGCAATATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
* * * *
67865781 GCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTTGAATTTCACTTATATTT
66 GCTGGGTAGCAATTTCTCGTTTGTCCAAAATAATCGAAGATCCCTTTAGAATTTCACTTATATTT
67865846 TC
131 TC
* * * **
67865848 TAAAAA-CTCTTCAAAACGAAGGTAATATTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATTG
1 TAAAAACCT-TTCAAAACGAAGGCAATATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACG
* * *
67865912 TGCTGGGTAGCGATTTC-CTGTTTGTCCAAAATGATCGAAGATTCCTTTAGAATTT
65 TGCTGGGTAGCAATTTCTC-GTTTGTCCAAAATAATCGAAGATCCCTTTAGAATTT
67865967 TACTCATACT
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
131 3 0.03
132 100 0.97
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (132 bp):
TAAAAACCTTTCAAAACGAAGGCAATATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
GCTGGGTAGCAATTTCTCGTTTGTCCAAAATAATCGAAGATCCCTTTAGAATTTCACTTATATTT
TC
Found at i:67868246 original size:35 final size:34
Alignment explanation
Indices: 67868200--67868268 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 34
67868190 CAGAAGATCC
*
67868200 AGCAGGAATCACTTTTAAAACATTGAACCTCACA
1 AGCAGGAATCACTTTCAAAACATTGAACCTCACA
67868234 NAGCAGGAATCACTTTCAAAACATTGAACCTCACA
1 -AGCAGGAATCACTTTCAAAACATTGAACCTCACA
67868269 GTCTTTGACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.41, C:0.25, G:0.12, T:0.22
Consensus pattern (34 bp):
AGCAGGAATCACTTTCAAAACATTGAACCTCACA
Found at i:67869160 original size:16 final size:16
Alignment explanation
Indices: 67869139--67869171 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
67869129 ATTAAAACCC
67869139 ACCCAAACTCC-AAAAA
1 ACCCAAA-TCCGAAAAA
67869155 ACCCAAATCCGAAAAA
1 ACCCAAATCCGAAAAA
67869171 A
1 A
67869172 TTACAAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.58, C:0.33, G:0.03, T:0.06
Consensus pattern (16 bp):
ACCCAAATCCGAAAAA
Found at i:67869739 original size:18 final size:18
Alignment explanation
Indices: 67869713--67869754 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
67869703 ATTTTTTATT
*
67869713 TTTAATATATATATTTAA
1 TTTATTATATATATTTAA
67869731 TTTATTATATATATTTAA
1 TTTATTATATATATTTAA
*
67869749 ATTATT
1 TTTATT
67869755 CGTGTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTATTATATATATTTAA
Found at i:67872047 original size:2 final size:2
Alignment explanation
Indices: 67872040--67872069 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
67872030 AAAATGATAA
*
67872040 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67872070 GAAATTGGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67878762 original size:13 final size:13
Alignment explanation
Indices: 67878744--67878774 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
67878734 CTATGTGCCT
67878744 ATCATTTGTTTTC
1 ATCATTTGTTTTC
67878757 ATCATTTGTTTTC
1 ATCATTTGTTTTC
67878770 A-CATT
1 ATCATT
67878775 ATAAATTAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.58
Consensus pattern (13 bp):
ATCATTTGTTTTC
Found at i:67879701 original size:23 final size:24
Alignment explanation
Indices: 67879667--67879716 Score: 84
Period size: 23 Copynumber: 2.1 Consensus size: 24
67879657 AATCTCATGG
67879667 TTTCTTACAACATCACA-TTTATA
1 TTTCTTACAACATCACACTTTATA
*
67879690 TTTCTTATAACATCACACTTTATA
1 TTTCTTACAACATCACACTTTATA
67879714 TTT
1 TTT
67879717 TAAAAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 16 0.64
24 9 0.36
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTCTTACAACATCACACTTTATA
Found at i:67881398 original size:23 final size:23
Alignment explanation
Indices: 67881363--67881416 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
67881353 ACACGTAATG
*
67881363 TTTTGTAAAGCCTTTGTGGCATA
1 TTTTGTAAAGCCTATGTGGCATA
* * *
67881386 TTTTGTGATGCCTATGTGGCGTA
1 TTTTGTAAAGCCTATGTGGCATA
*
67881409 TTCTGTAA
1 TTTTGTAA
67881417 CGCCCTTGAG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.19, C:0.13, G:0.24, T:0.44
Consensus pattern (23 bp):
TTTTGTAAAGCCTATGTGGCATA
Found at i:67885970 original size:46 final size:46
Alignment explanation
Indices: 67885903--67885995 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
67885893 CCTCAAAGAA
*
67885903 CAAAGACTTGCAATCAGAAACTATTAGGCTTCACAGAATAAACTTT
1 CAAAGACTTGCAATCAGAAACTATGAGGCTTCACAGAATAAACTTT
*
67885949 CAAAGACTTGCAATCAGAAACTATGATGCTTCACAGAATAAACTTT
1 CAAAGACTTGCAATCAGAAACTATGAGGCTTCACAGAATAAACTTT
67885995 C
1 C
67885996 TCGGATACAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (46 bp):
CAAAGACTTGCAATCAGAAACTATGAGGCTTCACAGAATAAACTTT
Found at i:67887676 original size:42 final size:42
Alignment explanation
Indices: 67887630--67887714 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
67887620 CATAGTATAT
67887630 TACATCATATATACCATTATATTACCTAATCATACATATTAA
1 TACATCATATATACCATTATATTACCTAATCATACATATTAA
67887672 TACATCATATATACCATTATATTACCTAATCATACATATTAA
1 TACATCATATATACCATTATATTACCTAATCATACATATTAA
67887714 T
1 T
67887715 TTAAACACTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (42 bp):
TACATCATATATACCATTATATTACCTAATCATACATATTAA
Found at i:67890443 original size:30 final size:30
Alignment explanation
Indices: 67890399--67890458 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67890389 ACTTAACAAG
*
67890399 CAAATACCTCTAAAATAATAATAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
67890429 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
67890459 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:67890853 original size:19 final size:19
Alignment explanation
Indices: 67890793--67890853 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
67890783 GCATTTAATT
** *
67890793 AAAATTAAATTTTTTTAAA
1 AAAATTAAAAATTATTAAA
* * **
67890812 AAATATAAAAAATAATTTTA
1 AAA-ATTAAAAATTATTAAA
67890832 AAAATTAAAAATTATTAAA
1 AAAATTAAAAATTATTAAA
67890851 AAA
1 AAA
67890854 TATATTAATT
Statistics
Matches: 30, Mismatches: 11, Indels: 2
0.70 0.26 0.05
Matches are distributed among these distances:
19 18 0.60
20 12 0.40
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATTAAAAATTATTAAA
Found at i:67900964 original size:15 final size:15
Alignment explanation
Indices: 67900944--67900975 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
67900934 AATTTTATTT
67900944 TATTTTTATTATAAA
1 TATTTTTATTATAAA
*
67900959 TATTTTTATTTTAAA
1 TATTTTTATTATAAA
67900974 TA
1 TA
67900976 ATATTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTTTTATTATAAA
Found at i:67902337 original size:148 final size:148
Alignment explanation
Indices: 67902069--67902367 Score: 589
Period size: 148 Copynumber: 2.0 Consensus size: 148
67902059 ATCGAATGCC
67902069 TACCTGTTTGAACCTAGCTAGGAGGTGATGAAAGAGAAGATGATCTTAAAAGAAAAAGAAAGGGA
1 TACCTGTTTGAACCTAGCTAGGAGGTGATGAAAGAGAAGATGATCTTAAAAGAAAAAGAAAGGGA
67902134 GTTGGATTGAATCTGTAAAAAAGAAGGAAAACGCTAATAAAGGTTGTGGATAGGGGGAGACAAAA
66 GTTGGATTGAATCTGTAAAAAAGAAGGAAAACGCTAATAAAGGTTGTGGATAGGGGGAGACAAAA
67902199 CCGGATTCATGCCATTCT
131 CCGGATTCATGCCATTCT
67902217 TACCTGTTTGAACCTAGCTAGGAGGTGATGAAAGAGAAGATGATCTTAAAAGAAAAAGAAAGGGA
1 TACCTGTTTGAACCTAGCTAGGAGGTGATGAAAGAGAAGATGATCTTAAAAGAAAAAGAAAGGGA
67902282 GTTGGATTGAATCTGTAAAAAAGAAGGAAAACGCTAATAAAGGTTGTGGATAGGGGGAGACAAAA
66 GTTGGATTGAATCTGTAAAAAAGAAGGAAAACGCTAATAAAGGTTGTGGATAGGGGGAGACAAAA
*
67902347 TCGGATTCATGCCATTCT
131 CCGGATTCATGCCATTCT
67902365 TAC
1 TAC
67902368 TGAAGAAACG
Statistics
Matches: 150, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 150 1.00
ACGTcount: A:0.40, C:0.11, G:0.27, T:0.22
Consensus pattern (148 bp):
TACCTGTTTGAACCTAGCTAGGAGGTGATGAAAGAGAAGATGATCTTAAAAGAAAAAGAAAGGGA
GTTGGATTGAATCTGTAAAAAAGAAGGAAAACGCTAATAAAGGTTGTGGATAGGGGGAGACAAAA
CCGGATTCATGCCATTCT
Found at i:67905924 original size:21 final size:22
Alignment explanation
Indices: 67905895--67905941 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
67905885 CAGAAGGAGT
*
67905895 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
67905917 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
67905938 GAGT
1 GAGT
67905942 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:67906430 original size:41 final size:41
Alignment explanation
Indices: 67906373--67906453 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
67906363 TTGTTGAATA
*
67906373 TTGGCAATATCCCACATTAGGAAAAGATAGAAAGGGAGGGG
1 TTGGCAATATCCCACATTAGAAAAAGATAGAAAGGGAGGGG
67906414 TTGGCAATATCCCACATTAGAAAAAGATAGAAAGGGAGGG
1 TTGGCAATATCCCACATTAGAAAAAGATAGAAAGGGAGGG
67906454 AGTTTGGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.41, C:0.12, G:0.30, T:0.17
Consensus pattern (41 bp):
TTGGCAATATCCCACATTAGAAAAAGATAGAAAGGGAGGGG
Found at i:67912899 original size:22 final size:21
Alignment explanation
Indices: 67912868--67912913 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 21
67912858 CTCAAGAAAA
67912868 TGCCCCTCATCAGTACATTCC
1 TGCCCCTCATCAGTACATTCC
67912889 TGCNCCCTCATCAGTACATTCC
1 TGC-CCCTCATCAGTACATTCC
67912911 TGC
1 TGC
67912914 TTTTAACATG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.17, C:0.41, G:0.11, T:0.28
Consensus pattern (21 bp):
TGCCCCTCATCAGTACATTCC
Found at i:67916636 original size:19 final size:19
Alignment explanation
Indices: 67916604--67916652 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
67916594 TTATAATATA
*
67916604 TTAAGATAATTATATAAAAAT
1 TTAA-ATAA-TATAAAAAAAT
67916625 TTAAATAATATAAAAAAAT
1 TTAAATAATATAAAAAAAT
67916644 TTAAA-AATA
1 TTAAATAATA
67916653 ACATGAATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 4 0.15
19 15 0.56
20 4 0.15
21 4 0.15
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
TTAAATAATATAAAAAAAT
Found at i:67917053 original size:20 final size:20
Alignment explanation
Indices: 67917025--67917066 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
67917015 TTTTAATTAA
*
67917025 ATTTGATTAATTACATAGTT
1 ATTTGATTAATTACATAATT
*
67917045 ATTTTATTAATTACATAATT
1 ATTTGATTAATTACATAATT
67917065 AT
1 AT
67917067 CCGGTAAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (20 bp):
ATTTGATTAATTACATAATT
Found at i:67917462 original size:7 final size:7
Alignment explanation
Indices: 67917450--67917476 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
67917440 CCTATCCCAA
67917450 TCCAAAT
1 TCCAAAT
67917457 TCCAAAT
1 TCCAAAT
67917464 TCCAAAT
1 TCCAAAT
67917471 TCCAAA
1 TCCAAA
67917477 ATCCTTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.30, G:0.00, T:0.26
Consensus pattern (7 bp):
TCCAAAT
Found at i:67929522 original size:20 final size:20
Alignment explanation
Indices: 67929494--67929531 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67929484 CTAGAAACTA
67929494 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
67929514 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
67929532 TATATGTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:67932068 original size:46 final size:46
Alignment explanation
Indices: 67932016--67932411 Score: 515
Period size: 46 Copynumber: 8.6 Consensus size: 46
67932006 ATGCCAAGTG
* * *
67932016 TCTTTCAACTATGGTCTTACTCATTTCCTATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* ** * **
67932062 TCTTTCAACTATGGTCTTGTTCATTTCATGTCACGTTGCCATATTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* ** *
67932108 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCAATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* ** *
67932154 TCTTTCAACCATGGTCTTATTCATTTCCCGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* ** *
67932200 TTTTTCAACCATGGTCTTGTTCATTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* *
67932246 TCTTTCAACCATGGTCTTACACATTTCATGTCATGTTGCTATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* * *
67932292 TCTTTCAACCATGGTCTTACACGTTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* *
67932338 TCTTTCAACCATGGTCTTAC-AATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* *
67932383 TCTTTCAACCATGGCCTTACACATTTCAT
1 TCTTTCAACCATGGTCTTACTCATTTCAT
67932412 TTCAGAAAGC
Statistics
Matches: 315, Mismatches: 34, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
45 42 0.13
46 273 0.87
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
Found at i:67932264 original size:138 final size:138
Alignment explanation
Indices: 67932016--67932410 Score: 578
Period size: 138 Copynumber: 2.9 Consensus size: 138
67932006 ATGCCAAGTG
* *
67932016 TCTTTCAACTATGGTCTTACTCATTTCCTATCATGTTGCCATGGTATCTTTCAACTATGGTCTTG
1 TCTTTCAACCATGGTCTTACTCATTTCCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTG
** ** *
67932081 TTCATTTCATGTCACGTTGCCATATTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTG
66 TTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACGTCATGTTG
67932146 CAATGGTA
131 CAATGGTA
* ** * *
67932154 TCTTTCAACCATGGTCTTATTCATTTCCCGTCACGTTGCCATGGTATTTTTCAACCATGGTCTTG
1 TCTTTCAACCATGGTCTTACTCATTTCCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTG
*
67932219 TTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCATGTTG
66 TTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACGTCATGTTG
*
67932284 CTATGGTA
131 CAATGGTA
* * *
67932292 TCTTTCAACCATGGTCTTACACGTTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTC-T-
1 TCTTTCAACCATGGTCTTACTCATTTCCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTG
* * * *
67932355 TACAATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGCCTTACACATTTCA
66 TTC-ATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
67932411 TTTCAGAAAG
Statistics
Matches: 230, Mismatches: 26, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
136 2 0.01
137 50 0.22
138 178 0.77
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (138 bp):
TCTTTCAACCATGGTCTTACTCATTTCCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTG
TTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACGTCATGTTG
CAATGGTA
Found at i:67934314 original size:20 final size:21
Alignment explanation
Indices: 67934273--67934320 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
67934263 AAATAATAAA
*
67934273 AAAATAATAATATATCTCATT
1 AAAATAATAATATATCTAATT
*
67934294 AAAATAAT-ATTTATCTAATT
1 AAAATAATAATATATCTAATT
67934314 -AAATAAT
1 AAAATAAT
67934321 TATAAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.28
20 10 0.40
21 8 0.32
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAATAATAATATATCTAATT
Found at i:67939679 original size:26 final size:26
Alignment explanation
Indices: 67939650--67939731 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
67939640 TGATACAAAT
67939650 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
67939676 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
67939702 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
67939728 TGAT
1 TGAT
67939732 TGGAATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:67945275 original size:128 final size:125
Alignment explanation
Indices: 67945040--67945369 Score: 401
Period size: 128 Copynumber: 2.6 Consensus size: 125
67945030 GAGAATTCCT
* *
67945040 TAAAACGAAGGCAAGTTTTGATGTTTGGAAATTCGGAAAATCGTGCCCTACCGTGCTGGGTCTCG
1 TAAAAC-AAGGCAAG-TTTGATGTTTGGAAATTCGG-GAATCGTGCCCTACCGTGCTGGGTTTCG
* * * *
67945105 ATTTCCCGTTTGTACAAAATAATCAAATATTCCTTTAGAATTTCACTCGTGTTTTTTCCAAATTC
63 ATTTCTCGTTTGTACAAAATAATCAAATATTCCTTTAGAATTTCACTCGTATTCTGT--AAATTC
*
67945170 T-AAACAAGGCAACGTTTGATGTTTGGAAATTCAGGGAATCGTGCCCTATCGTGCTGGGTTTCGA
1 TAAAACAAGGCAA-GTTTGATGTTTGGAAATTC-GGGAATCGTGCCCTACCGTGCTGGGTTTCGA
* * * *
67945234 TTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTTATTCGTATTCTGTAAATTC
64 TTTCTCGTTTGTACAAAATAATCAAATATTCCTTTAGAATTTCACTCGTATTCTGTAAATTC
* * ** * * *
67945296 TAAAACAAAGAAATGTTCAATGTTTGGAAGTTTGAGGAATCGTGCCCTACCGTGCTGGGTTTCGG
1 TAAAACAAGGCAA-GTTTGATGTTTGGAAATTCG-GGAATCGTGCCCTACCGTGCTGGGTTTCGA
*
67945361 TTTTTCGTT
64 TTTCTCGTT
67945370 GGATTAAATA
Statistics
Matches: 175, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
126 8 0.05
127 60 0.34
128 99 0.57
129 7 0.04
130 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (125 bp):
TAAAACAAGGCAAGTTTGATGTTTGGAAATTCGGGAATCGTGCCCTACCGTGCTGGGTTTCGATT
TCTCGTTTGTACAAAATAATCAAATATTCCTTTAGAATTTCACTCGTATTCTGTAAATTC
Found at i:67959827 original size:28 final size:28
Alignment explanation
Indices: 67959796--67959850 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
67959786 AGCCTCAAGG
*
67959796 CCGTCGATTTTAGCCCTAAAATTCTATT
1 CCGTCGATTTTAGCCCTAAAATCCTATT
67959824 CCGTCGATTTTAGCCCTAAAATCCTAT
1 CCGTCGATTTTAGCCCTAAAATCCTAT
67959851 CTCCAACTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.36
Consensus pattern (28 bp):
CCGTCGATTTTAGCCCTAAAATCCTATT
Found at i:67960776 original size:46 final size:47
Alignment explanation
Indices: 67960694--67960811 Score: 148
Period size: 46 Copynumber: 2.5 Consensus size: 47
67960684 GCCATGACTT
* * *
67960694 CTCCACTGCAACTTCAGGGAAATAAGGTCTGAGTA-TTTTTATCCTG
1 CTCCACTGCAACTTCAGGGAGATAAAGTCTGAGTATTTTTTATCCTA
* * *
67960740 CTCCACTGCAACTTCAGGGAGATAAAGTTTGTGTATTTTTTATCTTA
1 CTCCACTGCAACTTCAGGGAGATAAAGTCTGAGTATTTTTTATCCTA
* * *
67960787 CTCTACTGCAACTTTAGAGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAA
67960812 GGATCGCGGC
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
46 31 0.50
47 31 0.50
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (47 bp):
CTCCACTGCAACTTCAGGGAGATAAAGTCTGAGTATTTTTTATCCTA
Found at i:67961943 original size:35 final size:34
Alignment explanation
Indices: 67961897--67961966 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 34
67961887 CTTTGGCCTC
67961897 TTTCCCATTTTAAGTGTAGTACTTCTTGACGGAA
1 TTTCCCATTTTAAGTGTAGTACTTCTTGACGGAA
*
67961931 NTTTCCCTTTTTAAGTGTAGTACTTCTTGACGGAA
1 -TTTCCCATTTTAAGTGTAGTACTTCTTGACGGAA
67961966 T
1 T
67961967 CCGAATTCAC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 1 0.03
35 33 0.97
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.43
Consensus pattern (34 bp):
TTTCCCATTTTAAGTGTAGTACTTCTTGACGGAA
Found at i:67972722 original size:25 final size:25
Alignment explanation
Indices: 67972688--67972735 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
67972678 GAGGTGAAAG
*
67972688 CCTCACGAAAGCATAGTTTCTTAAA
1 CCTCACGAAAACATAGTTTCTTAAA
67972713 CCTCACGAAAACATAGTTTCTTA
1 CCTCACGAAAACATAGTTTCTTA
67972736 CTCCCACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.29
Consensus pattern (25 bp):
CCTCACGAAAACATAGTTTCTTAAA
Found at i:67973551 original size:127 final size:127
Alignment explanation
Indices: 67973405--67973723 Score: 512
Period size: 127 Copynumber: 2.5 Consensus size: 127
67973395 AACAAAAAAC
* *
67973405 CGAAACCCAGCACGGTAGGGCACGATTCCCCGAATTTCCAAATATCAAACATTGCCTTGTTTTAG
1 CGAAACCCAGCACGATAGGGCACGATTCCCTGAATTTCCAAATATCAAACATTGCCTTGTTTTAG
*
67973470 GGTTTAGAAAACACAAGTAAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAAT
66 GGTTTAGAAAACACAAGTAAAATTCTAAAGGAATATTCAATTATTTTGAACAAACAGGAAAT
* *
67973532 CGAAACCCAGCATGATAGGGCACGATTCCCTGAATTTCTAAATATCAAACATTGCCTTGTTTTAG
1 CGAAACCCAGCACGATAGGGCACGATTCCCTGAATTTCCAAATATCAAACATTGCCTTGTTTTAG
* *
67973597 GGTTTAGAAAACACGAGTAAAATTCTAAAGGAATATTCAATTATTTTGAACAAACGGGAAAT
66 GGTTTAGAAAACACAAGTAAAATTCTAAAGGAATATTCAATTATTTTGAACAAACAGGAAAT
* * * * * *
67973659 CGAAACCCATCACGATAGGGCACTATTCCCTGAATTTCCAAACATCGAATATTACCTTGGTTTTA
1 CGAAACCCAGCACGATAGGGCACGATTCCCTGAATTTCCAAATATCAAACATTGCCTT-GTTTTA
67973724 AAGAATTTTC
Statistics
Matches: 176, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
127 170 0.97
128 6 0.03
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (127 bp):
CGAAACCCAGCACGATAGGGCACGATTCCCTGAATTTCCAAATATCAAACATTGCCTTGTTTTAG
GGTTTAGAAAACACAAGTAAAATTCTAAAGGAATATTCAATTATTTTGAACAAACAGGAAAT
Found at i:67975622 original size:45 final size:45
Alignment explanation
Indices: 67975567--67975766 Score: 276
Period size: 45 Copynumber: 4.5 Consensus size: 45
67975557 GGAAGGTGAT
* *
67975567 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
67975612 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
67975657 ATCTGCT-TCTTCAATCTGCTTCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
67975701 ATCTGTTATCTCCGATTTGCTCCCCGTCCAATACAGGGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
67975746 ATCTATCATCTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
67975767 TCGATGTAAA
Statistics
Matches: 135, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
44 40 0.30
45 95 0.70
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:67975689 original size:89 final size:90
Alignment explanation
Indices: 67975567--67975749 Score: 287
Period size: 89 Copynumber: 2.0 Consensus size: 90
67975557 GGAAGGTGAT
** *
67975567 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGC
*
67975632 TCCCCGTCTAATACAGAGACGCCAA
66 TCCCCGTCCAATACAGAGACGCCAA
* *
67975657 ATCTGCT-TCTTCAATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGC
* *
67975721 TCCCCGTCCAATACAGGGATGCCAA
66 TCCCCGTCCAATACAGAGACGCCAA
67975746 ATCT
1 ATCT
67975750 ATCATCTTGG
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 78 0.92
90 7 0.08
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGC
TCCCCGTCCAATACAGAGACGCCAA
Found at i:67975988 original size:78 final size:78
Alignment explanation
Indices: 67975796--67975996 Score: 269
Period size: 78 Copynumber: 2.6 Consensus size: 78
67975786 GTCAGAGCTA
* *
67975796 CTATGTCTTCGATTTGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTGCTTCAATG
1 CTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATG
67975861 AAGGTCCAATCTG
66 AAGGTCCAATCTG
* * * *
67975874 TTGTGCCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATG
1 CTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATG
* *
67975939 GAGGT-CAGGTCTG
66 AAGGTCCA-ATCTG
* * ** *
67975952 CTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATACCAAATC
1 CTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
67975997 TATTTCTTCG
Statistics
Matches: 105, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
77 2 0.02
78 103 0.98
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (78 bp):
CTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATG
AAGGTCCAATCTG
Found at i:67976125 original size:87 final size:89
Alignment explanation
Indices: 67976026--67976294 Score: 239
Period size: 78 Copynumber: 3.2 Consensus size: 89
67976016 CTGACAGTAC
* *
67976026 AGAGATGCCAAATCATCTTAGATCTGCTTCA-GTGTAAACA-CGTGAAAGCAAAATCTGCTATGT
1 AGAGATGCCAAATCATCTTAGATCTGCTTCATGTGAAAACATC-CGAAAGCAAAATCTGCTATGT
*
67976089 CTTCGATCTGCTC-CTTGTC-AACGCA-
65 CTTCGATCTGCTCTC-CGTCGAA--CAT
* * ** *
67976114 AG-GATGCCAAATCATCTTAGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGT
1 AGAGATGCCAAATCATCTTAGATCTGCTTC-ATGTGAAAACATCCGAAAGCAAAATCTGCTATGT
*
67976178 CTTCGATCTGCTCTCCGTCGAATAT
65 CTTCGATCTGCTCTCCGTCGAACAT
* * **
67976203 AGAGATGCCAAATCATCTTGGATCTGCTTCA-ATG--AAGGT-C---AG----ATCTGCTATGTC
1 AGAGATGCCAAATCATCTTAGATCTGCTTCATGTGAAAACATCCGAAAGCAAAATCTGCTATGTC
*
67976257 TTCGATCTGCTCTCCGTCGAATAT
66 TTCGATCTGCTCTCCGTCGAACAT
*
67976281 GGAGATGCCAAATC
1 AGAGATGCCAAATC
67976295 TGTTTCTTTG
Statistics
Matches: 158, Mismatches: 16, Indels: 24
0.80 0.08 0.12
Matches are distributed among these distances:
78 49 0.31
82 1 0.01
85 1 0.01
86 3 0.02
87 26 0.16
88 6 0.04
89 43 0.27
90 29 0.18
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (89 bp):
AGAGATGCCAAATCATCTTAGATCTGCTTCATGTGAAAACATCCGAAAGCAAAATCTGCTATGTC
TTCGATCTGCTCTCCGTCGAACAT
Found at i:67976183 original size:89 final size:87
Alignment explanation
Indices: 67976029--67976190 Score: 227
Period size: 89 Copynumber: 1.8 Consensus size: 87
67976019 ACAGTACAGA
* * *
67976029 GATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAGCAAAATCTGCTATGTCTTCG
1 GATGCCAAATCATCTTAGATCTACTTCAGTGAAAACACGCGAAAGCAAAATCTGCTATGTCTTCG
67976094 ATCTGCTCCTTGTCAACGCAAG
66 ATCTGCTCCTTGTCAACGCAAG
* ** *
67976116 GATGCCAAATCATCTTAGATCTACTTCGATGTGAAAACATC-CGAAGGTTAGATCTGCTATGTCT
1 GATGCCAAATCATCTTAGATCTACTTC-A-GTGAAAACA-CGCGAAAGCAAAATCTGCTATGTCT
67976180 TCGATCTGCTC
63 TCGATCTGCTC
67976191 TCCGTCGAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
87 26 0.40
88 1 0.02
89 37 0.57
90 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (87 bp):
GATGCCAAATCATCTTAGATCTACTTCAGTGAAAACACGCGAAAGCAAAATCTGCTATGTCTTCG
ATCTGCTCCTTGTCAACGCAAG
Found at i:67976229 original size:298 final size:298
Alignment explanation
Indices: 67975880--67976514 Score: 1099
Period size: 298 Copynumber: 2.1 Consensus size: 298
67975870 TCTGTTGTGC
* * * * *
67975880 CTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGGAGGTC
1 CTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTC
*
67975945 AGGTCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATACCAAATCTATTTCTTCGATT
66 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATACCAAATCTATTTCTTCGATT
***
67976010 TGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACGTGAAAGC
131 TGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCACCATAAACACGTGAAAGC
* *
67976075 AAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTAGATCTAC
196 AAAATCTGCTATGTCTTCGATCCGCTCCTTGTCAACGCAAGGATACCAAATCATCTTAGATCTAC
67976140 TTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGT
261 TTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGT
67976178 CTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTC
1 CTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTC
* * *
67976243 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATT
66 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATACCAAATCTATTTCTTCGATT
*
67976308 TGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTTACCATAAACACGTGAAAGC
131 TGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCACCATAAACACGTGAAAGC
* *
67976373 CAAATCTTCTATGTCTTCGATCCGCTCCTTGTCAACGCAAGGATACCAAATCATCTTAGATCTAC
196 AAAATCTGCTATGTCTTCGATCCGCTCCTTGTCAACGCAAGGATACCAAATCATCTTAGATCTAC
67976438 TTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGT
261 TTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGT
* *
67976476 CTTCGATCTGCTCTCCGTCGAATATGGAGATGCTAAATC
1 CTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATC
67976515 TGTTTCTTTG
Statistics
Matches: 318, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
298 318 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (298 bp):
CTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTC
AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATACCAAATCTATTTCTTCGATT
TGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCACCATAAACACGTGAAAGC
AAAATCTGCTATGTCTTCGATCCGCTCCTTGTCAACGCAAGGATACCAAATCATCTTAGATCTAC
TTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGT
Found at i:67986926 original size:46 final size:46
Alignment explanation
Indices: 67986850--67987209 Score: 470
Period size: 46 Copynumber: 7.8 Consensus size: 46
67986840 TGATGTCATA
* * * * **
67986850 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATATTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCAGGTTGCCATG
* *** *
67986896 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGTTGCCATG
* *
67986943 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATA
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* ** *
67986989 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACTTTGCCACG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* * *
67987035 GTTTCTTTCGACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
67987081 GTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
67987127 GTATCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
67987173 GTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
67987210 AAAGCACACT
Statistics
Matches: 279, Mismatches: 33, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
46 241 0.86
47 38 0.14
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
Found at i:67990918 original size:46 final size:46
Alignment explanation
Indices: 67990845--67991111 Score: 358
Period size: 46 Copynumber: 5.8 Consensus size: 46
67990835 TGATGTCATA
* * * *
67990845 GTATCTTTCAACTATGGTTTTACTCATTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGTTGCCATG
* *** *
67990891 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTT-CCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGTTGCCATG
* *
67990937 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
67990983 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
67991029 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
67991075 GTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
67991112 AGAGCACACT
Statistics
Matches: 205, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
45 10 0.05
46 187 0.91
47 8 0.04
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
Found at i:67995238 original size:17 final size:17
Alignment explanation
Indices: 67995216--67995248 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
67995206 GATATGATAC
67995216 TAAAAT-TACTAAAAAAT
1 TAAAATATA-TAAAAAAT
67995233 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
67995249 ATCAGGGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:67995563 original size:19 final size:19
Alignment explanation
Indices: 67995539--67995629 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
67995529 AATCATATCT
*
67995539 TCTAAGCTTGCATATCATA
1 TCTAAGATTGCATATCATA
67995558 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
67995576 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
67995593 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
67995612 TCTAAAATTGCATATCAT
1 TCTAAGATTGCATATCAT
67995630 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:67995591 original size:35 final size:36
Alignment explanation
Indices: 67995551--67995621 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
67995541 TAAGCTTGCA
*
67995551 TATCATATCTAAGATTGCA-ATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAAATTG
67995586 TATCATATCTAAGATTGCATATCATATCTAAAATTG
1 TATCATATCTAAGATTGCATATCATATCTAAAATTG
67995622 CATATCATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 19 0.56
36 15 0.44
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCATATCTAAAATTG
Found at i:67995608 original size:14 final size:15
Alignment explanation
Indices: 67995553--67995608 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
67995543 AGCTTGCATA
67995553 TCATATCTAAGATTG
1 TCATATCTAAGATTG
67995568 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
67995586 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
67995603 -CATATC
1 TCATATC
67995609 ATATCTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:67997775 original size:42 final size:42
Alignment explanation
Indices: 67997728--67997815 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
67997718 AAAATCAATT
67997728 GGGTGCCATGTAACACCCCTCACCTGTATTCAATCCGAAAGA
1 GGGTGCCATGTAACACCCCTCACCTGTATTCAATCCGAAAGA
67997770 GGGTGCCATGTAACACCCCTCACCTGTATTCAATCCGAAAGA
1 GGGTGCCATGTAACACCCCTCACCTGTATTCAATCCGAAAGA
67997812 GGGT
1 GGGT
67997816 TACGGAGTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (42 bp):
GGGTGCCATGTAACACCCCTCACCTGTATTCAATCCGAAAGA
Found at i:68000245 original size:3 final size:3
Alignment explanation
Indices: 68000237--68000421 Score: 118
Period size: 3 Copynumber: 62.7 Consensus size: 3
68000227 ATTAGTTTAG
** * *
68000237 TTA TTA TTA TTA TT- TTA CCA TTA CTTA -TA TTTA TTA TCA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA TTA TTA
* *
68000282 TTA TTA TTA CTA TTA TTA TTA TT- TTA TT- TT- TTA TCA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * **
68000326 TCTA TTA TTA TTA TTTA CTA CTA TTA TTTA TTA TCA TTA TTA TTA CAA
1 T-TA TTA TTA TTA -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * * *
68000374 TTA TT- TTT TTC CTA TTA TTTA TTA TTA TTA TT- TTA TTA -TA TTT
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
68000417 TTA TT
1 TTA TT
68000422 TTTTATTTAC
Statistics
Matches: 142, Mismatches: 26, Indels: 28
0.72 0.13 0.14
Matches are distributed among these distances:
2 17 0.12
3 110 0.77
4 15 0.11
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:68000435 original size:23 final size:26
Alignment explanation
Indices: 68000261--68000440 Score: 68
Period size: 27 Copynumber: 6.5 Consensus size: 26
68000251 TTACCATTAC
* *
68000261 TTATATT-TATTATCATTACTATTATTA
1 TTATATTAT-TTATTATTATTATT-TTA
68000288 TTACTATTA-TTATTATT-TTATTTT-
1 TTA-TATTATTTATTATTATTATTTTA
*
68000312 TTATCATTATTATTTCTATTATTATTATTTA
1 TTAT-ATTATT-TAT-TATTATTA-T-TTTA
* *
68000343 CTACTATTATTTATTATCATTATTATTACAA
1 TTA-TATTATTTATTATTATTATT-TT---A
* **
68000374 TTAT-TTTTTTCCTATTATTTATTATTA
1 TTATATTATTTATTATTA-TTATT-TTA
* *
68000401 TTATTTTATTATATTTTTATT-TTTTA
1 TTATATTATT-TATTATTATTATTTTA
68000427 TT-TACTTATTTATT
1 TTATA-TTATTTATT
68000441 TGCTTATTTC
Statistics
Matches: 118, Mismatches: 16, Indels: 40
0.68 0.09 0.23
Matches are distributed among these distances:
23 1 0.01
24 7 0.06
25 8 0.07
26 16 0.14
27 22 0.19
28 16 0.14
29 22 0.19
30 14 0.12
31 11 0.09
32 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.66
Consensus pattern (26 bp):
TTATATTATTTATTATTATTATTTTA
Found at i:68000438 original size:19 final size:18
Alignment explanation
Indices: 68000388--68000441 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 18
68000378 TTTTTTCCTA
68000388 TTATTTATTA-TTATTATT
1 TTATTTATTATTTATT-TT
68000406 TTATTATATT-TTTATTTT
1 TTATT-TATTATTTATTTT
68000424 TTATTTACTTATTTATTT
1 TTATTTA-TTATTTATTT
68000442 GCTTATTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 2 0.06
18 14 0.44
19 16 0.50
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTATTTT
Found at i:68007322 original size:132 final size:132
Alignment explanation
Indices: 68007088--68007330 Score: 292
Period size: 132 Copynumber: 1.8 Consensus size: 132
68007078 ATCGAAGATG
* * * * *
68007088 GCGAATCTTATCTTCCTGAGGTAGCAAGGGAGAAGATTTAAGCCACTAGCCTTGTCTCCCTGAGC
1 GCGAATATTATCCTCCCGAGGTAGCAAGGGAGAAGATTTAAGCCACTAGCCATATCTCCCTGAGC
* * *** *
68007153 AGCAGTGGAGCTGGCTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGTAGATCGAAAG
66 AGAAGTGGAGCAGGCTGAAGACACTAGACCTTATCTCCCTAAGCAGTAGTGAAGTAGATCGAAAG
68007218 CA
131 CA
* * *
68007220 GCGAATATTATCCTCCCGAGGTAGCAGGGGAGCAGATTTTAGCCACTAGCCATATCTCCCTGAGA
1 GCGAATATTATCCTCCCGAGGTAGCAAGGGAGAAGATTTAAGCCACTAGCCATATCTCCCTGAG-
* * * *
68007285 TAGTAAG-GGAGCAGGCTGAAGCCACTAG-CCTTGTCTCCCTGAGCAG
65 CAG-AAGTGGAGCAGGCTGAAGACACTAGACCTTATCTCCCTAAGCAG
68007331 CAGGAGAGTA
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
132 71 0.78
133 18 0.20
134 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (132 bp):
GCGAATATTATCCTCCCGAGGTAGCAAGGGAGAAGATTTAAGCCACTAGCCATATCTCCCTGAGC
AGAAGTGGAGCAGGCTGAAGACACTAGACCTTATCTCCCTAAGCAGTAGTGAAGTAGATCGAAAG
CA
Found at i:68007512 original size:44 final size:44
Alignment explanation
Indices: 68007402--68007518 Score: 112
Period size: 44 Copynumber: 2.7 Consensus size: 44
68007392 AAACGGAAAA
** *
68007402 CCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTTTAGCCACTAG
1 CCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTAAAGACACTAG
* * * ***
68007446 CCTTATCTCCCT-AGGGTTGCAAGGGAGCAG-TCTAAAGATTGTAG
1 CCTTATCTTCCTGA-GGTAGCAAGGAAGCAGAT-TAAAGACACTAG
*
68007490 TCTTATCTTCCTGAGGTAGCAAGGAAGCA
1 CCTTATCTTCCTGAGGTAGCAAGGAAGCA
68007519 CACTGATGAT
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
43 2 0.04
44 54 0.95
45 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (44 bp):
CCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTAAAGACACTAG
Found at i:68007714 original size:133 final size:131
Alignment explanation
Indices: 68007549--68007902 Score: 430
Period size: 133 Copynumber: 2.7 Consensus size: 131
68007539 TCACCTCGAG
* *
68007549 ATAGCAGTAGGGTAGATCTAAA-ATGGCGAATCTTATCTCCCTGAGGTAGCAAGGGAGCAGATTT
1 ATAGCAGTAGAGTAGATCGAAAGATGGCGAATCTTATCTCCCTGAGGTAGCAAGGGAGCAGATTT
* *
68007613 AAGCCACTAGCCTTGTCTCCCTGAGCAGTAGTGGAGCAGGTTGAAGATTGCAGATCTTATATCCA
66 AAGCCACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGGCTGAAGATTGCAGATCTTATATCCA
68007678 T
131 T
* * * * *
68007679 GAGGTAGCACTAGAGTAGATC-AAAGACGGCAAATCTTATCTGCCTGAGGTAGCAACGGAGCAGA
1 -A--TAGCAGTAGAGTAGATCGAAAGATGGCGAATCTTATCTCCCTGAGGTAGCAAGGGAGCAGA
* * * *
68007743 TTTAAGCCACTAGCCTTGACTCCCTGAGTAGCAGTGGAGCAGGCTGAAGATTGTAGATCTTATCT
63 TTTAAGCCACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGGCTGAAGATTGCAGATCTTATAT
*
68007808 CCCT
128 CCAT
* * * *
68007812 A-AGCAGTAGTGTAGCAGGTCGAAAG-TGGTGAATCTTATCTTCCC-GAGGTAGCAGGGGAGTAG
1 ATAGCAGTAGAGTAG-A--TCGAAAGATGGCGAATCTTATC-TCCCTGAGGTAGCAAGGGAGCAG
* *
68007874 ATTTTAGCCACTAGCCTTATCTCCCTGAG
62 ATTTAAGCCACTAGCCTTGTCTCCCTGAG
68007903 GTAGTAAGGG
Statistics
Matches: 190, Mismatches: 25, Indels: 15
0.83 0.11 0.07
Matches are distributed among these distances:
129 11 0.06
130 1 0.01
131 1 0.01
132 58 0.31
133 119 0.63
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (131 bp):
ATAGCAGTAGAGTAGATCGAAAGATGGCGAATCTTATCTCCCTGAGGTAGCAAGGGAGCAGATTT
AAGCCACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGGCTGAAGATTGCAGATCTTATATCCA
T
Found at i:68007914 original size:44 final size:44
Alignment explanation
Indices: 68007845--68007946 Score: 107
Period size: 44 Copynumber: 2.3 Consensus size: 44
68007835 AGTGGTGAAT
* * * **
68007845 CTTATCTTCCC-GAGGTAGCAGGGGAGTAGATTTTAGCCACTAGC
1 CTTATC-TCCCTGAGGTAGCAAGGGAGCAGACTAAAGCCACTAGC
* * *
68007889 CTTATCTCCCTGAGGTAGTAAGGGAGCAGGCTAAAGCCAGTAGC
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTAAAGCCACTAGC
*
68007933 CTTGTCTCCCTGAG
1 CTTATCTCCCTGAG
68007947 CAACAGTGGA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
43 4 0.08
44 44 0.92
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (44 bp):
CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTAAAGCCACTAGC
Found at i:68007960 original size:132 final size:132
Alignment explanation
Indices: 68007576--68007961 Score: 332
Period size: 133 Copynumber: 2.9 Consensus size: 132
68007566 CTAAAATGGC
* * *
68007576 GAATCTTATCT-CCCTGAGGTAGCAAGGGAGCAGATTTAAGCCACTAGCCTTGTCTCCCTGAGCA
1 GAATCTTATCTGCCC-GAGGTAGCAACGGAGCAGATTTAAGCCACTAGCCTTGACTCCCTGAGTA
* * * ** * * * * * * * * * * *
68007640 GTAGTGGAGCAGGTTGAAGATTGCAGATCTTATATCCATGAGGTAGCACTAGAGTAGATC-AAAG
65 GAAGTGGAGCAGGCTAAAGACAGTAGACCTTATCTCCCT-AAGCAACAGTGGAGCAGGTCGAAAG
* *
68007704 ACGGC
129 -TGGT
* *
68007709 AAATCTTATCTGCCTGAGGTAGCAACGGAGCAGATTTAAGCCACTAGCCTTGACTCCCTGAGTAG
1 GAATCTTATCTGCCCGAGGTAGCAACGGAGCAGATTTAAGCCACTAGCCTTGACTCCCTGAGTAG
* * ** * ** *
68007774 CAGTGGAGCAGGCTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGTAGCAGGTCGAAAGTG
66 AAGTGGAGCAGGCTAAAGACAGTAGACCTTATCTCCCTAAGCAACAGTGGAGCAGGTCGAAAGTG
68007839 GT
131 GT
* ** * *
68007841 GAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGATTTTAGCCACTAGCCTT-ATCTCCCTGAGGT
1 GAATCTTATCTGCCCGAGGTAGCAACGGAGCAGATTTAAGCCACTAGCCTTGA-CTCCCTGA-GT
* * *
68007905 AGTAAG-GGAGCAGGCTAAAGCCAGTAG-CCTTGTCTCCCTGAGCAACAGTGGAGCAGG
64 AG-AAGTGGAGCAGGCTAAAGACAGTAGACCTTATCTCCCTAAGCAACAGTGGAGCAGG
68007962 CTGAAGATTG
Statistics
Matches: 210, Mismatches: 38, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
131 1 0.00
132 90 0.43
133 115 0.55
134 4 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (132 bp):
GAATCTTATCTGCCCGAGGTAGCAACGGAGCAGATTTAAGCCACTAGCCTTGACTCCCTGAGTAG
AAGTGGAGCAGGCTAAAGACAGTAGACCTTATCTCCCTAAGCAACAGTGGAGCAGGTCGAAAGTG
GT
Found at i:68008091 original size:177 final size:175
Alignment explanation
Indices: 68007713--68008274 Score: 575
Period size: 177 Copynumber: 3.2 Consensus size: 175
68007703 GACGGCAAAT
* * ** * * *
68007713 CTTATCTGCCT-GAGGTAGCAACGGAGCAGATTTAAGCCACTAGCCTTGACTCCCTGAGTAGCAG
1 CTTATCTCCCTAG-GGTAGCAAGGGAGCAGGCTAAAGCCAGTAGCCTTGTCTCCCTGAGTAGCAG
* * *
68007777 TGGAGCAGGCTGAAGATTGTAGATCTTATCTCCCTAAGCA-GTAG--TGTAGCAGGTCGAAAGTG
65 TGGAGCAGGCTGAAGATTGCAGATCTTATCT-CC-AAG-AGGTAGCATGGAGCAGATCGAAAGTG
68007839 GTGAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGATTTTAGCCACTAGC
127 GTGAATCTTATCTTCCCGAGGTAGCA-GGGAGTAGATTTTAGCCACTAGC
* * *
68007889 CTTATCTCCCT-GAGGTAGTAAGGGAGCAGGCTAAAGCCAGTAGCCTTGTCTCCCTGAGCAACAG
1 CTTATCTCCCTAG-GGTAGCAAGGGAGCAGGCTAAAGCCAGTAGCCTTGTCTCCCTGAGTAGCAG
*
68007953 TGGAGCAGGCTGAAGATTGCAGATCTCATCTCCAAGAGGTAGCAATGGAGCAGATCG-AAGATGG
65 TGGAGCAGGCTGAAGATTGCAGATCTTATCTCCAAGAGGTAGC-ATGGAGCAGATCGAAAG-TGG
* *
68008017 CGAATCTTATCTTCCCGAGGTAGCAGGCGAGTAGATTTTAGGCACTAGC
128 TGAATCTTATCTTCCCGAGGTAGCAGG-GAGTAGATTTTAGCCACTAGC
* * *** * * *
68008066 CTTATCTCCGTAGGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAA
1 CTTATCTCCCTAGGGTAGCAAGGGAGCAGGCTAAAGCCAGTAGCCTTGTCTCCCTGA-GTAGC-A
** * * * ** * * * *
68008131 G-GGAGCACACTGATGATT-CAGATTTTGTCTCCTCGAGTTAGCAGTGGGGTAGATCGAAAGCGG
64 GTGGAGCAGGCTGAAGATTGCAGATCTTATCTCCAAGAGGTAGCA-TGGAGCAGATCGAAAGTGG
* * *
68008194 TGAATCTTATCTTCCCGAGGTAGCAAGGGAGCAGATTTAAGCCACCAGC
128 TGAATCTTATCTTCCCGAGGTAGC-AGGGAGTAGATTTTAGCCACTAGC
* *
68008243 TTTATCTCCTTAGGGTAGC-AGTGGAGCAGGCT
1 CTTATCTCCCTAGGGTAGCAAG-GGAGCAGGCT
68008275 GAAGATAGCG
Statistics
Matches: 327, Mismatches: 46, Indels: 25
0.82 0.12 0.06
Matches are distributed among these distances:
173 1 0.00
174 7 0.02
175 2 0.01
176 91 0.28
177 200 0.61
178 24 0.07
179 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (175 bp):
CTTATCTCCCTAGGGTAGCAAGGGAGCAGGCTAAAGCCAGTAGCCTTGTCTCCCTGAGTAGCAGT
GGAGCAGGCTGAAGATTGCAGATCTTATCTCCAAGAGGTAGCATGGAGCAGATCGAAAGTGGTGA
ATCTTATCTTCCCGAGGTAGCAGGGAGTAGATTTTAGCCACTAGC
Found at i:68008234 original size:619 final size:620
Alignment explanation
Indices: 68007044--68008280 Score: 1836
Period size: 619 Copynumber: 2.0 Consensus size: 620
68007034 GGTGAATTCA
* * * * * *
68007044 CAGATCCTATCTCCATGAGGTAGCAATGGAGCAAATCGAAGATGGCGAATCTTATCTTCCTGAGG
1 CAGATCCTATATCCATGAGGTAGCAATAGAGCAAATCAAAGACGGCAAATCTTATCTGCCTGAGG
* * *
68007109 TAGCAAGGGAGAAGATTTAAGCCACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGCTGGCTGAAGA
66 TAGCAACGGAGAAGATTTAAGCCACTAGCCTTGACTCCCTGAGCAGCAGTGGAGCAGGCTGAAGA
*
68007174 TTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGTAGATCGAAAGCAGCGAATATTATCCTCCCGA
131 TTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAAGCAGCGAATATTATCCTCCCGA
*
68007239 GGTAGCAGGGGAGCAGATTTTAGCCACTAGCCATATCTCCCTGAGATAGTAAGGGAGCAGGCTGA
196 GGTAGCAGGGGAGCAGATTTTAGCCACTAGCCATATCTCCCTGAGATAGTAAGGGAGCAGGCTAA
* * *
68007304 AGCCACTAGCCTTGTCTCCCTGAGCAGCAGGAGAGTAGGCTGAAGATTGCAGATCTTATCTCCAT
261 AGCCACTAGCCTTGTCTCCCTGAGCAACAGGAGAGCAGGCTGAAGATTGCAGATCTCATCTCCAT
*
68007369 AAGGTAGCAATGGAGCAGATCAAAAACGGAAAACCTTATCTTCCTGAGGTAGCAAGGAAGCAGAT
326 AAGGTAGCAATGGAGCAGATCAAAAACGGAAAACCTTATCTTCCCGAGGTAGCAAGGAAGCAGAT
* *
68007434 TTTAGCCACTAGCCTTATCTCCCTAGGGTTGCAAGGGAGCAGTCTAAAGATTGTAGTCTTATCTT
391 TTTAGCCACTAGCCTTATCTCCCTAGGGTAGCAAGGGAGCAGGCTAAAGATTGTAGTCTTATCTT
* *
68007499 CCTGAGGTAGCAAGGAAGCACACTGATGATTTAGATTTTTTCACCTCGAGATAGCAGTAGGGTAG
456 CCTGAGGTAGCAAGGAAGCACACTGATGATTCAGATTTTGTCACCTCGAGATAGCAGTAGGGTAG
* * * *
68007564 ATCTAAAATGGCGAATCTTATCTCCCTGAGGTAGCAAGGGAGCAGATTTAAGCCACTAGCCTTGT
521 ATCGAAAACGGCGAATCTTATCTCCCTGAGGTAGCAAGGGAGCAGATTTAAGCCACCAGCCTTAT
* *
68007629 CTCCCT-GAGCAGTAGTGGAGCAGGTTGAAGATTG
586 CTCCCTAGAGCAGCAGTGGAGCAGGCTGAAGATTG
* * * *
68007663 CAGATCTTATATCCATGAGGTAGCACTAGAGTAGATCAAAGACGGCAAATCTTATCTGCCTGAGG
1 CAGATCCTATATCCATGAGGTAGCAATAGAGCAAATCAAAGACGGCAAATCTTATCTGCCTGAGG
* *
68007728 TAGCAACGGAGCAGATTTAAGCCACTAGCCTTGACTCCCTGAGTAGCAGTGGAGCAGGCTGAAGA
66 TAGCAACGGAGAAGATTTAAGCCACTAGCCTTGACTCCCTGAGCAGCAGTGGAGCAGGCTGAAGA
* * ** * * *
68007793 TTGTAGATCTTATCTCCCTAAGCAGTAGTGTAGCAGGTCGAAAGTGGTGAATCTTATCTTCCCGA
131 TTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAAGCAGCGAATATTATCCTCCCGA
* * *
68007858 GGTAGCAGGGGAGTAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAGTAAGGGAGCAGGCTAA
196 GGTAGCAGGGGAGCAGATTTTAGCCACTAGCCATATCTCCCTGAGATAGTAAGGGAGCAGGCTAA
*
68007923 AGCCAGTAGCCTTGTCTCCCTGAGCAACAGTG-GAGCAGGCTGAAGATTGCAGATCTCATCTCCA
261 AGCCACTAGCCTTGTCTCCCTGAGCAACAG-GAGAGCAGGCTGAAGATTGCAGATCTCATCTCCA
* * * ** * * *
68007987 -AGAGGTAGCAATGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGC-AGGCGAGTA
325 TA-AGGTAGCAATGGAGCAGATCAAAAACGGAAAACCTTATCTTCCCGAGGTAGCAAGG-AAGCA
* * *
68008050 GATTTTAGGCACTAGCCTTATCTCCGTAGGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTAT
388 GATTTTAGCCACTAGCCTTATCTCCCTAGGGTAGCAAGGGAGCAGGCTAAAGATTGTAGTCTTAT
* * * *
68008115 CTTCCTGAGGTAGCAAGGGAGCACACTGATGATTCAGATTTTGTCTCCTCGAGTTAGCAGTGGGG
453 CTTCCTGAGGTAGCAAGGAAGCACACTGATGATTCAGATTTTGTCACCTCGAGATAGCAGTAGGG
* * *
68008180 TAGATCGAAAGCGGTGAATCTTATCTTCCC-GAGGTAGCAAGGGAGCAGATTTAAGCCACCAGCT
518 TAGATCGAAAACGGCGAATCTTATC-TCCCTGAGGTAGCAAGGGAGCAGATTTAAGCCACCAGCC
* * *
68008244 TTATCTCCTTAGGGTAGCAGTGGAGCAGGCTGAAGAT
582 TTATCTCCCTAGAGCAGCAGTGGAGCAGGCTGAAGAT
68008281 AGCGAATCTC
Statistics
Matches: 550, Mismatches: 63, Indels: 9
0.88 0.10 0.01
Matches are distributed among these distances:
618 4 0.01
619 519 0.94
620 27 0.05
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (620 bp):
CAGATCCTATATCCATGAGGTAGCAATAGAGCAAATCAAAGACGGCAAATCTTATCTGCCTGAGG
TAGCAACGGAGAAGATTTAAGCCACTAGCCTTGACTCCCTGAGCAGCAGTGGAGCAGGCTGAAGA
TTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAAGCAGCGAATATTATCCTCCCGA
GGTAGCAGGGGAGCAGATTTTAGCCACTAGCCATATCTCCCTGAGATAGTAAGGGAGCAGGCTAA
AGCCACTAGCCTTGTCTCCCTGAGCAACAGGAGAGCAGGCTGAAGATTGCAGATCTCATCTCCAT
AAGGTAGCAATGGAGCAGATCAAAAACGGAAAACCTTATCTTCCCGAGGTAGCAAGGAAGCAGAT
TTTAGCCACTAGCCTTATCTCCCTAGGGTAGCAAGGGAGCAGGCTAAAGATTGTAGTCTTATCTT
CCTGAGGTAGCAAGGAAGCACACTGATGATTCAGATTTTGTCACCTCGAGATAGCAGTAGGGTAG
ATCGAAAACGGCGAATCTTATCTCCCTGAGGTAGCAAGGGAGCAGATTTAAGCCACCAGCCTTAT
CTCCCTAGAGCAGCAGTGGAGCAGGCTGAAGATTG
Found at i:68008288 original size:89 final size:87
Alignment explanation
Indices: 68007980--68008297 Score: 220
Period size: 89 Copynumber: 3.6 Consensus size: 87
68007970 TGCAGATCTC
* *
68007980 ATCTCCAAGAGGTAGCAATGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGC-AGG
1 ATCTCCTAG-GGTAGCAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGCAAGG
* * * *
68008044 CGAGTAGATTTTAGGCACTAGCCTT
65 -GAGCAGA-TTTAAGCACCAGCTTT
* * * * *
68008069 ATCTCCGTAGGGTAGCAAG-GGAGCAG-GCTGAAGATTG-TAGTCTTATCTTCCTGAGGTAGCAA
1 ATCTCC-TAGGGTAGC-AGTGGAGCAGATC-GAAGATGGCGAATCTTATCTTCCCGAGGTAGCAA
* * * * * *
68008131 GGGAGCACACTGATG-ATTCAGATTTT
63 GGGAGCAGATTTAAGCA-CCAG-CTTT
* * * * * * *
68008157 GTCTCCTCGAGTTAGCAGTGGGGTAGATCGAA-AGCGGTGAATCTTATCTTCCCGAGGTAGCAAG
1 ATCTCCTAG-GGTAGCAGTGGAGCAGATCGAAGA-TGGCGAATCTTATCTTCCCGAGGTAGCAAG
68008221 GGAGCAGATTTAAGCCACCAGCTTT
64 GGAGCAGATTTAAG-CACCAGCTTT
* * *
68008246 ATCTCCTTAGGGTAGCAGTGGAGCAG-GCTGAAGATAGCGAATCTCAT-TTCCC
1 ATCTCC-TAGGGTAGCAGTGGAGCAGATC-GAAGATGGCGAATCTTATCTTCCC
68008298 TGAAGTTGCA
Statistics
Matches: 170, Mismatches: 43, Indels: 33
0.69 0.17 0.13
Matches are distributed among these distances:
86 1 0.01
87 10 0.06
88 53 0.31
89 96 0.56
90 9 0.05
91 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (87 bp):
ATCTCCTAGGGTAGCAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGCAAGGG
AGCAGATTTAAGCACCAGCTTT
Found at i:68009084 original size:7 final size:7
Alignment explanation
Indices: 68009051--68009079 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
68009041 AACCAAGGTA
68009051 TTTTCTT
1 TTTTCTT
68009058 TTTTCTT
1 TTTTCTT
68009065 TTTTCTT
1 TTTTCTT
68009072 TTTT-TT
1 TTTTCTT
68009078 TT
1 TT
68009080 CTTTTCGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.18
7 18 0.82
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (7 bp):
TTTTCTT
Found at i:68009824 original size:3 final size:3
Alignment explanation
Indices: 68009816--68009932 Score: 96
Period size: 3 Copynumber: 38.7 Consensus size: 3
68009806 ATTAGTTTAT
* * *
68009816 TTA TTA TTA TTA TT- TTA CTA TTA CTTA -TA TTTA TTA TCA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA TTA TTA
* * * *
68009861 TTA TGA CTA TTA TTA TTA CTA TTA TTA TTA -TA TTA TTTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
* *
68009906 TTA CTA TTA TTTA TTA TCA TTA TTA TT
1 TTA TTA TTA -TTA TTA TTA TTA TTA TT
68009933 GTCATTTTAT
Statistics
Matches: 89, Mismatches: 18, Indels: 14
0.74 0.15 0.12
Matches are distributed among these distances:
2 6 0.07
3 72 0.81
4 11 0.12
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:68009864 original size:12 final size:12
Alignment explanation
Indices: 68009846--68009943 Score: 71
Period size: 12 Copynumber: 8.4 Consensus size: 12
68009836 TTACTTATAT
68009846 TTATTATCATTA
1 TTATTATCATTA
* * *
68009858 CTATTATGACTA
1 TTATTATCATTA
* *
68009870 TTATTATTACTA
1 TTATTATCATTA
*
68009882 TTATTATTA-TA
1 TTATTATCATTA
68009893 TTATT-T-ATTA
1 TTATTATCATTA
*
68009903 TCATTA-CTATTA
1 TTATTATC-ATTA
68009915 TTTATTATCATTA
1 -TTATTATCATTA
*
68009928 TTATTGTCATT-
1 TTATTATCATTA
68009939 TTATT
1 TTATT
68009944 TTATTTTTTA
Statistics
Matches: 72, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
9 1 0.01
10 7 0.10
11 12 0.17
12 42 0.58
13 9 0.12
14 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (12 bp):
TTATTATCATTA
Found at i:68009872 original size:51 final size:51
Alignment explanation
Indices: 68009817--68009915 Score: 148
Period size: 51 Copynumber: 1.9 Consensus size: 51
68009807 TTAGTTTATT
*
68009817 TATTATTATTA-TTTTACTATTACT-TATATTTATTATCATTACTATTATGAC
1 TATTATTATTACTATTACTATTA-TAT-TATTTATTATCATTACTATTATGAC
*
68009868 TATTATTATTACTATTATTATTATATTATTTATTATCATTACTATTAT
1 TATTATTATTACTATTACTATTATATTATTTATTATCATTACTATTAT
68009916 TTATTATCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
51 34 0.77
52 10 0.23
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (51 bp):
TATTATTATTACTATTACTATTATATTATTTATTATCATTACTATTATGAC
Found at i:68009965 original size:12 final size:11
Alignment explanation
Indices: 68009950--68009992 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
68009940 TATTTTATTT
68009950 TTTATTTACTTA
1 TTTATTT-CTTA
68009962 TTTATTTGCTTA
1 TTTATTT-CTTA
*
68009974 TTTCATTTTTTA
1 TTT-ATTTCTTA
68009986 TTTATTT
1 TTTATTT
68009993 GTTTAAACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 4 0.14
12 20 0.71
13 4 0.14
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.72
Consensus pattern (11 bp):
TTTATTTCTTA
Found at i:68009997 original size:12 final size:12
Alignment explanation
Indices: 68009959--68009997 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
68009949 TTTTATTTAC
*
68009959 TTATTTATTTGC
1 TTATTTATTTGT
68009971 TTATTTCATTT-T
1 TTATTT-ATTTGT
68009983 TTATTTATTTGT
1 TTATTTATTTGT
68009995 TTA
1 TTA
68009998 AACTTTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 4 0.17
12 16 0.67
13 4 0.17
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (12 bp):
TTATTTATTTGT
Found at i:68022910 original size:33 final size:32
Alignment explanation
Indices: 68022867--68022929 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
68022857 AATTCATTAT
68022867 GGCTGAACGGCAAGGGCATGAAATCAGCAGNTG
1 GGCTGAACGGCAAGGGCATGAAATCAGCAG-TG
* *
68022900 GGCTGGACGGCAAGGGTATGAAATCAGCAG
1 GGCTGAACGGCAAGGGCATGAAATCAGCAG
68022930 GAAAATTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.30, C:0.17, G:0.38, T:0.13
Consensus pattern (32 bp):
GGCTGAACGGCAAGGGCATGAAATCAGCAGTG
Found at i:68025270 original size:23 final size:23
Alignment explanation
Indices: 68025244--68025288 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
68025234 TGGGTATGTG
*
68025244 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
68025267 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
68025289 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:68028792 original size:39 final size:39
Alignment explanation
Indices: 68028749--68028827 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
68028739 CCAGACATAT
*
68028749 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
68028788 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
68028827 T
1 T
68028828 CACTGAATGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:68037139 original size:11 final size:11
Alignment explanation
Indices: 68037120--68037161 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
68037110 TCAAAATAGG
68037120 AAAAA-AAAAT
1 AAAAATAAAAT
*
68037130 AAACATAAAAT
1 AAAAATAAAAT
68037141 AAAAATAAACAT
1 AAAAATAAA-AT
*
68037153 AAAGATAAA
1 AAAAATAAA
68037162 TGGACTCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 4 0.15
11 13 0.48
12 10 0.37
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:68037146 original size:17 final size:17
Alignment explanation
Indices: 68037120--68037161 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
68037110 TCAAAATAGG
68037120 AAAA-AAAAATAAACAT
1 AAAATAAAAATAAACAT
68037136 AAAATAAAAATAAACAT
1 AAAATAAAAATAAACAT
68037153 AAAGATAAA
1 AAA-ATAAA
68037162 TGGACTCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 4 0.17
17 15 0.62
18 5 0.21
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (17 bp):
AAAATAAAAATAAACAT
Found at i:68037160 original size:23 final size:21
Alignment explanation
Indices: 68037120--68037161 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
68037110 TCAAAATAGG
68037120 AAAAAAAAATAAACATAAAAT
1 AAAAAAAAATAAACATAAAAT
*
68037141 AAAAATAAACATAAAGATAAA
1 AAAAA-AAA-ATAAACATAAA
68037162 TGGACTCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 3 0.17
23 10 0.56
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (21 bp):
AAAAAAAAATAAACATAAAAT
Found at i:68038516 original size:27 final size:27
Alignment explanation
Indices: 68038486--68038656 Score: 225
Period size: 27 Copynumber: 6.3 Consensus size: 27
68038476 TATTGAAATG
**
68038486 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
68038513 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCATTTTA
*
68038540 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
68038567 CCCTCAATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
68038594 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
68038621 CCCTCGATTTGCAAAATTATCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
68038648 CCCTCGATT
1 CCCTCGATT
68038657 GTGAAATTAC
Statistics
Matches: 127, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:68038601 original size:81 final size:81
Alignment explanation
Indices: 68038486--68038652 Score: 271
Period size: 81 Copynumber: 2.1 Consensus size: 81
68038476 TATTGAAATG
* * *
68038486 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
68038551 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
68038567 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTG
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
*
68038632 CAAAATTATCATTTTA
66 CAAAATTACCATTTTA
68038648 CCCTC
1 CCCTC
68038653 GATTGTGAAA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (81 bp):
CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:68038678 original size:27 final size:26
Alignment explanation
Indices: 68038648--68038811 Score: 93
Period size: 27 Copynumber: 6.1 Consensus size: 26
68038638 TATCATTTTA
* **
68038648 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
68038675 CCCTG-TAGGATAAAATTATCAAAATAC
1 CCCTGAT-TG-TAAAATTACCAAAATAC
*
68038702 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
** * * *
68038729 CAATGGTTTGTGAAATTACCGAAATA-
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
68038755 CCCTCAATTTGTAAAATTACAAAAATAC
1 CCCT-GA-TTGTAAAATTACCAAAATAC
68038783 CCCTGATT-TACAAAATTA-CAGAAATAC
1 CCCTGATTGT--AAAATTACCA-AAATAC
68038810 CC
1 CC
68038812 TTGACTTTTT
Statistics
Matches: 106, Mismatches: 22, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
25 2 0.02
26 7 0.07
27 90 0.85
28 6 0.06
29 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:68038799 original size:54 final size:55
Alignment explanation
Indices: 68038686--68038812 Score: 141
Period size: 54 Copynumber: 2.3 Consensus size: 55
68038676 CCTGTAGGAT
* * * * * **
68038686 AAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCAATGGTTTGT
1 AAAATTACCGAAATACCCTCTAATTTGTAAAATTACAAAAATACCAATGATTTAC
* **
68038740 GAAATTACCGAAATACCCTC-AATTTGTAAAATTACAAAAATACCCCTGATTTAC
1 AAAATTACCGAAATACCCTCTAATTTGTAAAATTACAAAAATACCAATGATTTAC
*
68038794 AAAATTACAGAAATACCCT
1 AAAATTACCGAAATACCCT
68038813 TGACTTTTTG
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 59 0.98
55 1 0.02
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (55 bp):
AAAATTACCGAAATACCCTCTAATTTGTAAAATTACAAAAATACCAATGATTTAC
Found at i:68038834 original size:29 final size:28
Alignment explanation
Indices: 68038767--68038874 Score: 96
Period size: 27 Copynumber: 3.9 Consensus size: 28
68038757 CTCAATTTGT
* * *
68038767 AAAATTACAAAAATACCCCTGA-TTTAC
1 AAAATTATAGAAATACCCTTGAGTTTAC
* * **
68038794 AAAATTACAGAAATACCCTTGACTTTTTG
1 AAAATTATAGAAATACCCTTGA-GTTTAC
* *
68038823 AAAATTATAGAAATGCCATT-AGTTTAC
1 AAAATTATAGAAATACCCTTGAGTTTAC
*
68038850 AAAATTATTGAAATACCCTTG-GTTT
1 AAAATTATAGAAATACCCTTGAGTTT
68038875 GTAGATTTAC
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
27 44 0.68
28 1 0.02
29 20 0.31
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (28 bp):
AAAATTATAGAAATACCCTTGAGTTTAC
Found at i:68039839 original size:25 final size:24
Alignment explanation
Indices: 68039801--68039870 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
68039791 AGGAAGTGCT
*
68039801 AAAAGGGCTCTGACCCAGTTTACC
1 AAAAGGGCTTTGACCCAGTTTACC
*
68039825 GAAAAGGGCTTTGACCCAGTTTATC
1 -AAAAGGGCTTTGACCCAGTTTACC
*
68039850 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGACCCAGTT
68039871 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGACCCAGTTTACC
Found at i:68039883 original size:24 final size:23
Alignment explanation
Indices: 68039801--68039897 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 23
68039791 AGGAAGTGCT
* * *
68039801 AAAAGGGCTCTGACCCAGTTTACC
1 AAAAGGGCTTTGCCCCAG-TTATC
*
68039825 GAAAAGGGCTTTGACCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAG-TTATC
*
68039850 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATC
**
68039874 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
68039898 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.06
24 13 0.21
25 46 0.73
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:68042647 original size:81 final size:81
Alignment explanation
Indices: 68042512--68043407 Score: 1711
Period size: 81 Copynumber: 11.1 Consensus size: 81
68042502 TAATGAAATG
* *
68042512 CCCTCAATTTGTAGAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
* *
68042577 TAAAATTACAATTTTA
66 CAAAATTACCATTTTA
68042593 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
68042658 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
68042674 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
68042739 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
68042755 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
68042820 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
68042836 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
68042901 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
68042917 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
68042982 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
68042998 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
68043063 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
68043079 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
68043144 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
68043160 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
68043225 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
68043241 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
68043306 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * * *
68043322 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTG
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
*
68043387 CAAAATTATCATTTTA
66 CAAAATTACCATTTTA
68043403 CCCTC
1 CCCTC
68043408 GATTGTGAAA
Statistics
Matches: 806, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 806 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.39
Consensus pattern (81 bp):
CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:68043433 original size:27 final size:26
Alignment explanation
Indices: 68043403--68043545 Score: 85
Period size: 27 Copynumber: 5.3 Consensus size: 26
68043393 TATCATTTTA
**
68043403 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
*
68043430 CCCTG-TAG-GATAGAATTACCAAAATAC
1 CCCTGATTGTG--A-AATTACCAAAATAC
* *
68043457 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * * *
68043484 CACTGGTTTATGAAATTACCGAAATA-
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
68043510 CCCTCAATTTGTAAAATTACAAAAATAC
1 CCCT-GA-TTGTGAAATTACCAAAATAC
68043538 CCCTGATT
1 CCCTGATT
68043546 TACAAAATTA
Statistics
Matches: 89, Mismatches: 19, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
24 1 0.01
25 2 0.02
26 7 0.08
27 71 0.80
28 6 0.07
29 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:68043484 original size:54 final size:54
Alignment explanation
Indices: 68043401--68043542 Score: 139
Period size: 54 Copynumber: 2.6 Consensus size: 54
68043391 ATTATCATTT
* * **
68043401 TACCCTCGA-TTGTGAAATTACTGAAATACCCCTGTAGGATA-G-AATTACCAAAA
1 TACCCTCAATTTGTAAAATTACAAAAATACCCCTG--GGATATGAAATTACCAAAA
* * * ** *
68043454 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTATGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACAAAAATACCCCTGGGATATGAAATTACCAAAA
68043508 TACCCTCAATTTGTAAAATTACAAAAATACCCCTG
1 TACCCTCAATTTGTAAAATTACAAAAATACCCCTG
68043543 ATTTACAAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
52 4 0.06
53 6 0.08
54 61 0.85
55 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACAAAAATACCCCTGGGATATGAAATTACCAAAA
Found at i:68043546 original size:27 final size:27
Alignment explanation
Indices: 68043443--68043580 Score: 120
Period size: 27 Copynumber: 5.1 Consensus size: 27
68043433 TGTAGGATAG
*
68043443 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTATAA
* * *
68043470 AATTACCAAAATACCACTGGTTTATGA
1 AATTACCAAAATACCCCTGATTTATAA
* * *
68043497 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTATAA
* *
68043524 AATTACAAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTATAA
* *
68043551 AATTA-CAGAAATACCCTTGACTTTTTAA
1 AATTACCA-AAATACCCCTGA-TTTATAA
68043579 AA
1 AA
68043581 ATTATAGAAA
Statistics
Matches: 87, Mismatches: 19, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
26 4 0.05
27 72 0.83
28 11 0.13
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTATAA
Found at i:68043554 original size:54 final size:55
Alignment explanation
Indices: 68043443--68043567 Score: 164
Period size: 54 Copynumber: 2.3 Consensus size: 55
68043433 TGTAGGATAG
* * * * **
68043443 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTATGA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACAAAAATACCACTGATTTACAA
*
68043497 AATTACCGAAATACCCTC-AATTTGTAAAATTACAAAAATACCCCTGATTTACAA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACAAAAATACCACTGATTTACAA
*
68043551 AATTACAGAAATACCCT
1 AATTACCGAAATACCCT
68043568 TGACTTTTTA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 61 0.98
55 1 0.02
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (55 bp):
AATTACCGAAATACCCTCTAATTTGTAAAATTACAAAAATACCACTGATTTACAA
Found at i:68043589 original size:29 final size:28
Alignment explanation
Indices: 68043522--68043629 Score: 98
Period size: 27 Copynumber: 3.9 Consensus size: 28
68043512 CTCAATTTGT
* * *
68043522 AAAATTACAAAAATACCCCTGA-TTTAC
1 AAAATTATAGAAATACCCTTGAGTTTAC
* *
68043549 AAAATTACAGAAATACCCTTGACTTTTTA-
1 AAAATTATAGAAATACCCTTGA--GTTTAC
* *
68043578 AAAATTATAGAAATGCCATT-AGTTTAC
1 AAAATTATAGAAATACCCTTGAGTTTAC
*
68043605 AAAATTATTGAAATACCCTTG-GTTT
1 AAAATTATAGAAATACCCTTGAGTTT
68043630 GTAGATTTGC
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
26 4 0.06
27 41 0.61
28 1 0.01
29 17 0.25
30 4 0.06
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (28 bp):
AAAATTATAGAAATACCCTTGAGTTTAC
Found at i:68045904 original size:22 final size:22
Alignment explanation
Indices: 68045879--68045940 Score: 70
Period size: 24 Copynumber: 2.7 Consensus size: 22
68045869 ATTTGCACCA
68045879 TTGAGTGGTTTTTCCACACCGT
1 TTGAGTGGTTTTTCCACACCGT
* **
68045901 TTGAGTAGCTTTTATCTGCACCGT
1 TTGAGT-GGTTTT-TCCACACCGT
*
68045925 TTGAGTGGTTTATCCA
1 TTGAGTGGTTTTTCCA
68045941 TACTGTATTA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
22 8 0.26
23 9 0.29
24 14 0.45
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (22 bp):
TTGAGTGGTTTTTCCACACCGT
Found at i:68045959 original size:46 final size:45
Alignment explanation
Indices: 68045866--68045981 Score: 108
Period size: 46 Copynumber: 2.6 Consensus size: 45
68045856 AGTTGAACAA
* * * *
68045866 TTTATTTGCACCATTGAGTGGTTTTTCCACACCGTTTGAGTAGCT
1 TTTATCTGCACCATTGAGTGGTTTATCCACACCGTTTGAGCAACT
* * *
68045911 TTTATCTGCACCGTTTGAGTGGTTTATCCATACTGTATT-AGCAACT
1 TTTATCTGCACC-ATTGAGTGGTTTATCCACACCGT-TTGAGCAACT
* * * *
68045957 TTTATGTGTAACAATGAGTGGTTTA
1 TTTATCTGCACCATTGAGTGGTTTA
68045982 ACCATATCGT
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
45 22 0.39
46 33 0.58
47 2 0.04
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (45 bp):
TTTATCTGCACCATTGAGTGGTTTATCCACACCGTTTGAGCAACT
Found at i:68046127 original size:18 final size:19
Alignment explanation
Indices: 68046104--68046156 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
68046094 TTATTACTAA
*
68046104 TGGTTTATCCATAAC-GAG
1 TGGTTTATCCACAACAGAG
*
68046122 TGGTTTGTCCACAACGATGAG
1 TGGTTTATCCACAAC-A-GAG
68046143 TGGTTTATCCACAA
1 TGGTTTATCCACAA
68046157 TGCGGTGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 13 0.45
21 16 0.55
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (19 bp):
TGGTTTATCCACAACAGAG
Found at i:68049408 original size:16 final size:15
Alignment explanation
Indices: 68049387--68049433 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
68049377 ACGTCCAACC
68049387 AATTAAGAAAATAATA
1 AATTAA-AAAATAATA
68049403 AATT-AAAAATAAATA
1 AATTAAAAAAT-AATA
*
68049418 AAGTTAAAATATAATA
1 AA-TTAAAAAATAATA
68049434 TAAATAAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 5 0.19
15 7 0.26
16 10 0.37
17 5 0.19
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (15 bp):
AATTAAAAAATAATA
Found at i:68050692 original size:10 final size:10
Alignment explanation
Indices: 68050665--68050703 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
68050655 TTAAATTCTA
68050665 AAAGATAAAT
1 AAAGATAAAT
68050675 ACAA-ATAAAT
1 A-AAGATAAAT
*
68050685 AAAGATAATT
1 AAAGATAAAT
68050695 AAAGATAAA
1 AAAGATAAA
68050704 AGCTAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.21
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:68051439 original size:15 final size:15
Alignment explanation
Indices: 68051383--68051485 Score: 59
Period size: 15 Copynumber: 6.5 Consensus size: 15
68051373 TTATATTAAA
68051383 TTATATTAAAATATT
1 TTATATTAAAATATT
*
68051398 TTATTTTAAATTATATT
1 TTATATTAAA--ATATT
* *
68051415 TTGA-AATAAAATGTT
1 TT-ATATTAAAATATT
68051430 TTATATT-AAATCAATT
1 TTATATTAAAAT--ATT
**
68051446 GAATATT-AAATATT
1 TTATATTAAAATATT
68051460 AAATTATATTAAAATATT
1 ---TTATATTAAAATATT
68051478 TTAATATT
1 TT-ATATT
68051486 TTATTTTTAT
Statistics
Matches: 67, Mismatches: 10, Indels: 21
0.68 0.10 0.21
Matches are distributed among these distances:
14 8 0.12
15 19 0.28
16 16 0.24
17 16 0.24
18 8 0.12
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (15 bp):
TTATATTAAAATATT
Found at i:68051838 original size:6 final size:6
Alignment explanation
Indices: 68051829--68051879 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
68051819 TTATATTTAT
*
68051829 TTAATA TTAATA TTAATA TTAATA -TAAAA TTTAA-A TTAATTA TTATATA
1 TTAATA TTAATA TTAATA TTAATA TTAATA -TTAATA TTAA-TA TTA-ATA
68051878 TT
1 TT
68051880 TTAAAAAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
5 8 0.21
6 19 0.49
7 11 0.28
8 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
TTAATA
Found at i:68051959 original size:17 final size:18
Alignment explanation
Indices: 68051930--68051972 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
68051920 ATTGTCAACG
68051930 ATATTCTTTATTT-TTA-T
1 ATATT-TTTATTTATTATT
68051947 ATATTTTTAATTTATTATT
1 ATATTTTT-ATTTATTATT
68051966 ATATTTT
1 ATATTTT
68051973 CTTGAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 3 0.13
17 9 0.39
18 3 0.13
19 8 0.35
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (18 bp):
ATATTTTTATTTATTATT
Found at i:68052461 original size:15 final size:16
Alignment explanation
Indices: 68052441--68052475 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
68052431 TCTATAGGGT
68052441 AAAATAAAATA-TTAA
1 AAAATAAAATATTTAA
68052456 AAAATAAAATATTTAA
1 AAAATAAAATATTTAA
68052472 AAAA
1 AAAA
68052476 GAGAGACACT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATAAAATATTTAA
Found at i:68056156 original size:21 final size:21
Alignment explanation
Indices: 68056130--68056170 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68056120 ATCTGCTCAA
* *
68056130 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
68056151 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
68056171 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:68064337 original size:31 final size:31
Alignment explanation
Indices: 68064299--68064360 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
68064289 GATATTATAC
68064299 ATACAAAGGTATTTTAATAATTATTCTAGGA
1 ATACAAAGGTATTTTAATAATTATTCTAGGA
68064330 ATACAAAGGTATTTTAATAATTATTCTAGGA
1 ATACAAAGGTATTTTAATAATTATTCTAGGA
68064361 CTAAGCGGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (31 bp):
ATACAAAGGTATTTTAATAATTATTCTAGGA
Found at i:68072517 original size:24 final size:27
Alignment explanation
Indices: 68072487--68072537 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
68072477 CCACATCGTT
68072487 TCCTCCTCT-T-T-CTCCGCCGCCGCC
1 TCCTCCTCTGTCTGCTCCGCCGCCGCC
68072511 TCCTCCTCTGTCTGCTCCGCCGCCGCC
1 TCCTCCTCTGTCTGCTCCGCCGCCGCC
68072538 AGCCGNNNNN
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 9 0.38
25 1 0.04
26 1 0.04
27 13 0.54
ACGTcount: A:0.00, C:0.57, G:0.16, T:0.27
Consensus pattern (27 bp):
TCCTCCTCTGTCTGCTCCGCCGCCGCC
Found at i:68085824 original size:6 final size:6
Alignment explanation
Indices: 68085815--68085845 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
68085805 AGAAACAGAA
68085815 GAGTTG GAGTTG GAGTTG GAGTTG GAGTTG G
1 GAGTTG GAGTTG GAGTTG GAGTTG GAGTTG G
68085846 TTAGATTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (6 bp):
GAGTTG
Found at i:68093357 original size:26 final size:26
Alignment explanation
Indices: 68093328--68093488 Score: 259
Period size: 26 Copynumber: 6.2 Consensus size: 26
68093318 TGGTACAAAT
68093328 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
68093354 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68093380 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * * *
68093406 TGATAATTGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68093432 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
68093458 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68093484 TGATA
1 TGATA
68093489 NNNNNNNNNN
Statistics
Matches: 122, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 122 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:68093390 original size:52 final size:52
Alignment explanation
Indices: 68093328--68093488 Score: 286
Period size: 52 Copynumber: 3.1 Consensus size: 52
68093318 TGGTACAAAT
68093328 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
68093380 TGATAATGGGTTAGGTAAATGTTCCATGATAATTGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
68093432 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
68093484 TGATA
1 TGATA
68093489 NNNNNNNNNN
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 103 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.37
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:68098292 original size:47 final size:47
Alignment explanation
Indices: 68098218--68098311 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
68098208 CTTAAACGAG
* *
68098218 AAGTAACGGAGTTTGTAGGGAACTGTCTGACATGCTAGCAAGTGAAA
1 AAGTAACGGAGTTCGTAGGGAAATGTCTGACATGCTAGCAAGTGAAA
68098265 AAGTAACGGAGTTCGTAGGGAAATGTCTGACATGCTAGCAAGTGAAA
1 AAGTAACGGAGTTCGTAGGGAAATGTCTGACATGCTAGCAAGTGAAA
68098312 GCTGAGCTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.22
Consensus pattern (47 bp):
AAGTAACGGAGTTCGTAGGGAAATGTCTGACATGCTAGCAAGTGAAA
Found at i:68099755 original size:26 final size:26
Alignment explanation
Indices: 68099726--68099886 Score: 227
Period size: 26 Copynumber: 6.2 Consensus size: 26
68099716 TGGTACAAAT
68099726 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
68099752 TGATAAATGGATTAGGTAAATATTCCA
1 TGAT-AATGGATTAGGTAAATGTTCCA
68099779 TGATAATTGG-TTAGGTAAATGTTCCA
1 TGATAA-TGGATTAGGTAAATGTTCCA
* *
68099805 TGGTAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
68099831 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
68099857 TGATAATGGTTTAGGTAAATGTTCCG
1 TGATAATGGATTAGGTAAATGTTCCA
68099883 TGAT
1 TGAT
68099887 GGGCATTTCA
Statistics
Matches: 122, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
25 3 0.02
26 92 0.75
27 25 0.20
28 2 0.02
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:68099834 original size:52 final size:52
Alignment explanation
Indices: 68099726--68099886 Score: 252
Period size: 52 Copynumber: 3.1 Consensus size: 52
68099716 TGGTACAAAT
68099726 TGATAA-TGAGTTAGGTAAATGTTCCATGATAAATGGATTAGGTAAATATTCCA
1 TGATAATTG-GTTAGGTAAATGTTCCATGAT-AATGGATTAGGTAAATATTCCA
*
68099779 TGATAATTGGTTAGGTAAATGTTCCATGGTAATGGATTAGGTAAATATTCCA
1 TGATAATTGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* * * *
68099831 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCG
1 TGATAATTGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
68099883 TGAT
1 TGAT
68099887 GGGCATTTCA
Statistics
Matches: 101, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
52 73 0.72
53 26 0.26
54 2 0.02
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATTGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:68106854 original size:155 final size:154
Alignment explanation
Indices: 68106572--68106881 Score: 568
Period size: 155 Copynumber: 2.0 Consensus size: 154
68106562 AGGGTAGAGT
68106572 TGTAACGCCCCAATTTTCGGGAATCCTGTGAATGTTGGCATAGGTTTAATTATGTTAGTGGGCCT
1 TGTAACGCCCCAATTTTCGGGAATCCTGTGAATGTTGGCATAGGTTTAATTATGTTAGTGGGCCT
68106637 CTAGAAGGCCCAAGCTTAAGATAGAACCCGACAATTTTAGTTAATTTTTGTTCCATAAGAAAAAA
66 CTAGAAGGCCCAAGCTTAAGATAGAACCCGACAATTTTAGTTAATTTTTGTTCCATAAG--AAAA
68106702 AGGG-GTGAAATTATGAAATAGAACC
129 AGGGAGTGAAATTATGAAATAGAACC
68106727 TGTAACGCCCCAATTTTCGGGAATCCTGTGAATGTTGGCATAGGTTTAATTATGTTAGTGGGCCT
1 TGTAACGCCCCAATTTTCGGGAATCCTGTGAATGTTGGCATAGGTTTAATTATGTTAGTGGGCCT
**
68106792 CTAGAAGGCCCAAGCTTAAGATAGAACCCGGTAATTTTAGTTAATTTTTGTTCCATAAGAAAAAG
66 CTAGAAGGCCCAAGCTTAAGATAGAACCCGACAATTTTAGTTAATTTTTGTTCCATAAGAAAAAG
*
68106857 GGAGTGAAATTATGAAATAGGACC
131 GGAGTGAAATTATGAAATAGAACC
68106881 T
1 T
68106882 ATGTGAAAAT
Statistics
Matches: 151, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
153 8 0.05
154 21 0.14
155 122 0.81
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (154 bp):
TGTAACGCCCCAATTTTCGGGAATCCTGTGAATGTTGGCATAGGTTTAATTATGTTAGTGGGCCT
CTAGAAGGCCCAAGCTTAAGATAGAACCCGACAATTTTAGTTAATTTTTGTTCCATAAGAAAAAG
GGAGTGAAATTATGAAATAGAACC
Found at i:68107097 original size:26 final size:26
Alignment explanation
Indices: 68107060--68107143 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
68107050 TGATGCAAAT
* *
68107060 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68107086 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68107112 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68107138 TGATAA
1 TGATAA
68107144 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:68109544 original size:26 final size:26
Alignment explanation
Indices: 68109515--68109622 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
68109505 TGGTACAAAT
*
68109515 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
68109541 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
68109567 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
68109593 TGATAATTGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
68109619 TGAT
1 TGAT
68109623 GGGCATTTTA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:68112196 original size:14 final size:14
Alignment explanation
Indices: 68112177--68112206 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
68112167 TACATCATGT
68112177 TTTTTAATACTATA
1 TTTTTAATACTATA
68112191 TTTTTAATACTATA
1 TTTTTAATACTATA
68112205 TT
1 TT
68112207 ATGTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTTAATACTATA
Found at i:68112275 original size:64 final size:57
Alignment explanation
Indices: 68112201--68112346 Score: 143
Period size: 64 Copynumber: 2.4 Consensus size: 57
68112191 TTTTTAATAC
*
68112201 TATA-TTATGTATATATTTTTACAT-GCATTATGTACATATTTTCAATAACTATATCATATGTA
1 TATATTTATGTA-ATATTTTTA-ATAGCATTATGTACATATTTT---TAA-TAGAT-ATATGTA
* ** **
68112263 TATATTTTATGTACATACTTTTAATATTATTATGTATTTATTTTTAATAGATATATGTA
1 TATA-TTTATGTA-ATATTTTTAATAGCATTATGTACATATTTTTAATAGATATATGTA
68112322 TATATTTATGTAATATTTTTAATAG
1 TATATTTATGTAATATTTTTAATAG
68112347 TCTTTTTTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
57 11 0.15
58 8 0.11
59 11 0.15
60 4 0.06
61 3 0.04
62 4 0.06
63 2 0.03
64 29 0.40
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (57 bp):
TATATTTATGTAATATTTTTAATAGCATTATGTACATATTTTTAATAGATATATGTA
Found at i:68112311 original size:23 final size:23
Alignment explanation
Indices: 68112187--68112270 Score: 53
Period size: 23 Copynumber: 3.3 Consensus size: 23
68112177 TTTTTAATAC
68112187 TATATTTTTAATACTATATTATGTA
1 TATATTTTTAATA-T-TATTATGTA
**
68112212 TATATTTTTACAT-GCATTATGTA
1 TATATTTTTA-ATATTATTATGTA
* *
68112235 CATATTTTCAATAACTATATCATATGTA
1 TATATTTTTAAT-A-T-TAT--TATGTA
68112263 TATATTTT
1 TATATTTT
68112271 ATGTACATAC
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
22 2 0.04
23 16 0.36
25 10 0.22
26 4 0.09
28 13 0.29
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.52
Consensus pattern (23 bp):
TATATTTTTAATATTATTATGTA
Found at i:68113186 original size:18 final size:17
Alignment explanation
Indices: 68113151--68113192 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
68113141 GCACGGTGGC
*
68113151 CGGC-GCCGGCGACGGA
1 CGGCGGCCGACGACGGA
68113167 CGGCGGCCGACGATCGGA
1 CGGCGGCCGACGA-CGGA
*
68113185 CGGTGGCC
1 CGGCGGCC
68113193 CTCCTGGCCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 4 0.18
17 7 0.32
18 11 0.50
ACGTcount: A:0.12, C:0.36, G:0.48, T:0.05
Consensus pattern (17 bp):
CGGCGGCCGACGACGGA
Found at i:68113686 original size:3 final size:3
Alignment explanation
Indices: 68113680--68113831 Score: 175
Period size: 3 Copynumber: 50.0 Consensus size: 3
68113670 TTCTTTAGTT
* * *
68113680 TTA TTA TT- TT- TTA TAA TT- TTA TCA TTA TTA TTA TTA TTA TTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
68113725 TTA TTA TTA TTA TATA TTA GTA TTA TTA TTA TTA TATA TTA GTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* *
68113772 TTA TTA TTA TATA TTA GTA TTA TTA TTA TTA TATA TTA GTA TTA TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
68113819 TTA TTA TATA TTA
1 TTA TTA T-TA TTA
68113832 GTATATACTC
Statistics
Matches: 128, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
2 6 0.05
3 107 0.84
4 15 0.12
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:68113745 original size:22 final size:22
Alignment explanation
Indices: 68113703--68113850 Score: 262
Period size: 22 Copynumber: 6.7 Consensus size: 22
68113693 TAATTTTATC
68113703 ATTATTATTATTAT-TATTAGT
1 ATTATTATTATTATATATTAGT
68113724 ATTATTATTATTATATATTAGT
1 ATTATTATTATTATATATTAGT
68113746 ATTATTATTATTATATATTAGT
1 ATTATTATTATTATATATTAGT
68113768 ATTATTATTATTATATATTAGT
1 ATTATTATTATTATATATTAGT
68113790 ATTATTATTATTATATATTAGT
1 ATTATTATTATTATATATTAGT
68113812 ATTATTATTATTATATATTAGT
1 ATTATTATTATTATATATTAGT
* *
68113834 ATATACTCTTATTATAT
1 AT-TATTATTATTATAT
68113851 GCATATATAT
Statistics
Matches: 123, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
21 14 0.11
22 97 0.79
23 12 0.10
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (22 bp):
ATTATTATTATTATATATTAGT
Found at i:68114067 original size:3 final size:3
Alignment explanation
Indices: 68114059--68114091 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
68114049 TGTATTTCAA
68114059 TAT TAT TAT TA- TATT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
68114092 AGTGTATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 24 0.86
4 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:68114101 original size:21 final size:21
Alignment explanation
Indices: 68114059--68114107 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
68114049 TGTATTTCAA
*
68114059 TATTATTATTATATTTATTAT
1 TATTATTATTATATGTATTAT
68114080 TATTATTATTATAGTGTA-TAT
1 TATTATTATTATA-TGTATTAT
*
68114101 TTTTATT
1 TATTATT
68114108 TATGTACATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 22 0.88
22 3 0.12
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (21 bp):
TATTATTATTATATGTATTAT
Found at i:68114309 original size:20 final size:21
Alignment explanation
Indices: 68114286--68114338 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
68114276 GTTATATACG
*
68114286 TATATATATTATGTGTATT-T
1 TATATATATTATGTATATTAT
68114306 TATATATATTATGTATATTAT
1 TATATATATTATGTATATTAT
* *
68114327 TATTTTTATTAT
1 TATATATATTAT
68114339 ACATGATGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 18 0.62
21 11 0.38
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (21 bp):
TATATATATTATGTATATTAT
Found at i:68126364 original size:70 final size:72
Alignment explanation
Indices: 68126288--68126431 Score: 213
Period size: 70 Copynumber: 2.0 Consensus size: 72
68126278 TGTTTTCAAA
* **
68126288 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACATGCTGAGGTATTTTCAAATTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGAGTGACATGCCAAGGTATTTTCAAATTCT
68126351 GCTT-TTC
66 G-TTGTTC
* *
68126358 AATCAACTCATATTGCGAGAGGTGAGTTGAACTTCGGGTGACATGCCAAGGTATTTTCAAATTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGAGTGACATGCCAAGGTATTTTCAAATTCT
68126423 GTTGTTC
66 GTTGTTC
68126430 AA
1 AA
68126432 ATTCTATTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
70 33 0.50
71 3 0.05
72 30 0.45
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (72 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGAGTGACATGCCAAGGTATTTTCAAATTCT
GTTGTTC
Found at i:68126546 original size:72 final size:72
Alignment explanation
Indices: 68126462--68126602 Score: 203
Period size: 72 Copynumber: 2.0 Consensus size: 72
68126452 TTTTCAAAAG
* * * * *
68126462 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGTTCACGTACTGAGGTATTTTCAATTTCTG
1 TCAACTCATATTGCGAGAGGTGAGTTGA-ACTTCGGGTCACATACCGAGGTATTTTCAAATTCTG
68126526 CTTTTCAA
65 CTTTTCAA
* *
68126534 TCAACTCATATTGCGAGAGGTGAGTTGAACTTCGGGTCACATGCCGAGGTATTTTCAAATTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAACTTCGGGTCACATACCGAGGTATTTTCAAATTCTGC
68126599 TTTT
66 TTTT
68126603 ATCTTCTAGT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
71 3 0.05
72 58 0.95
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.37
Consensus pattern (72 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAACTTCGGGTCACATACCGAGGTATTTTCAAATTCTGC
TTTTCAA
Found at i:68126617 original size:160 final size:160
Alignment explanation
Indices: 68126427--68127150 Score: 931
Period size: 160 Copynumber: 4.4 Consensus size: 160
68126417 AATTCTGTTG
*
68126427 TTCAAATTCTATTTTTATCTTCTAGTTTTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTCAAATTCTGTTTTTATCTTCTAGTTTTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGC
*
68126492 CTTGGTTCACGTACTGAGGTATTTTCAATTTCTGCTTTTCAATCAACTCATATTGCGAGAGGTGA
66 CTTGGTTCACGTACTGAGGTATTTTCAATTTCTACTTTTCAATCAACTCATATTGCGAGAGGTGA
68126557 GTTGAACTTCGGGTCACATGCCGAGGTATT
131 GTTGAACTTCGGGTCACATGCCGAGGTATT
*
68126587 TTCAAATTCTGTTTTTATCTTCTAGTTTTCAAAAGTCAACTCATATTGCGAGAGGTAAGTTGAGC
1 TTCAAATTCTGTTTTTATCTTCTAGTTTTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGC
*
68126652 CTTGGTTCACGTATTGAGGTATTTTCAATTTCTACTTTTCAATCAACTCATATTGCGAGAGGTGA
66 CTTGGTTCACGTACTGAGGTATTTTCAATTTCTACTTTTCAATCAACTCATATTGCGAGAGGTGA
68126717 GTTGAACTTCGGGTCACATGCCGAGGTATT
131 GTTGAACTTCGGGTCACATGCCGAGGTATT
*
68126747 TTCAAATTCTGTTTTTATCTTCTAGTTTTCAAAAGTCAACTCATATTGCGAGAGGTAAGTTGAGC
1 TTCAAATTCTGTTTTTATCTTCTAGTTTTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGC
*
68126812 CTTGGTTCACGTATTGAGGTATTTTCAATTTCTACTTTTCAATCAACTCATATTGCGAGAGGTGA
66 CTTGGTTCACGTACTGAGGTATTTTCAATTTCTACTTTTCAATCAACTCATATTGCGAGAGGTGA
68126877 GTTGAACTTCGGGTCACATGCCGAGGTATT
131 GTTGAACTTCGGGTCACATGCCGAGGTATT
* *
68126907 TTCAAATTCTATTGTTCAAATTCTGTTTTAAT-TTCTACTTTTCCAAAA-TTAACTCATATTGCG
1 TTCAAATTC---TG---------T-TTTT-ATCTTCTAGTTTT-CAAAAGTCAACTCATATTGCG
** * * * * * *
68126970 AGAGGTGAGTTGAGCCTCAGATCACG--CTGAAGTATTTTCAGTTTAT-GTTTCAAAACAATCAA
51 AGAGGTGAGTTGAGCCTTGGTTCACGTACTGAGGTATTTTCAATTTCTACTTT----TCAATCAA
* * * * *
68127032 CTCATATTGCGTGAGGTGAGTTGAGCCTT-GGTTCACATGCTGTGGTATT
112 CTCATATTGCGAGAGGTGAGTTGA-ACTTCGGGTCACATGCCGAGGTATT
** ** * * *
68127081 TTCAGTTTCTGTTTTTCAAATTACT-GTTTGTCAAAAAGTCGACTTATATTGCGAAAGGTGAGTT
1 TTCAAATTCTGTTTTT-ATCTT-CTAGTTT-TC-AAAAGTCAACTCATATTGCGAGAGGTGAGTT
68127145 GAGCCT
62 GAGCCT
68127151 CGGGAGACGC
Statistics
Matches: 509, Mismatches: 30, Indels: 46
0.87 0.05 0.08
Matches are distributed among these distances:
160 325 0.64
161 5 0.01
162 7 0.01
163 9 0.02
164 28 0.06
170 3 0.01
171 18 0.04
172 1 0.00
173 49 0.10
174 61 0.12
175 3 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (160 bp):
TTCAAATTCTGTTTTTATCTTCTAGTTTTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGC
CTTGGTTCACGTACTGAGGTATTTTCAATTTCTACTTTTCAATCAACTCATATTGCGAGAGGTGA
GTTGAACTTCGGGTCACATGCCGAGGTATT
Found at i:68126743 original size:72 final size:72
Alignment explanation
Indices: 68126622--68126756 Score: 182
Period size: 72 Copynumber: 1.9 Consensus size: 72
68126612 TTTTCAAAAG
* * * ** *
68126622 TCAACTCATATTGCGAGAGGTAAGTTGAGCCTTGGTTCACGTATTGAGGTATTTTCAATTTCTAC
1 TCAACTCATATTGCGAGAGGTAAGTTGAGACTTGGGTCACATACCGAGGTATTTTCAAATTCTAC
68126687 TTTTCAA
66 TTTTCAA
* *
68126694 TCAACTCATATTGCGAGAGGTGAGTTGA-ACTTCGGGTCACATGCCGAGGTATTTTCAAATTCT
1 TCAACTCATATTGCGAGAGGTAAGTTGAGACTT-GGGTCACATACCGAGGTATTTTCAAATTCT
68126757 GTTTTTATCT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
71 3 0.06
72 51 0.94
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (72 bp):
TCAACTCATATTGCGAGAGGTAAGTTGAGACTTGGGTCACATACCGAGGTATTTTCAAATTCTAC
TTTTCAA
Done.