Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 204 of 284
Found at i:68126903 original size:72 final size:72
Alignment explanation
Indices: 68126782--68126925 Score: 184
Period size: 72 Copynumber: 2.0 Consensus size: 72
68126772 TTTTCAAAAG
* * * ** *
68126782 TCAACTCATATTGCGAGAGGTAAGTTGAGCCTTGGTTCACGTATTGAGGTATTTTCAATTTCTAC
1 TCAACTCATATTGCGAGAGGTAAGTTGAGACTTGGGTCACATACCGAGGTATTTTCAAATTCTA-
68126847 TT-TTCAA
65 TTGTTCAA
* *
68126854 TCAACTCATATTGCGAGAGGTGAGTTGA-ACTTCGGGTCACATGCCGAGGTATTTTCAAATTCTA
1 TCAACTCATATTGCGAGAGGTAAGTTGAGACTT-GGGTCACATACCGAGGTATTTTCAAATTCTA
68126918 TTGTTCAA
65 TTGTTCAA
68126926 ATTCTGTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
71 5 0.08
72 57 0.92
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (72 bp):
TCAACTCATATTGCGAGAGGTAAGTTGAGACTTGGGTCACATACCGAGGTATTTTCAAATTCTAT
TGTTCAA
Found at i:68126926 original size:14 final size:13
Alignment explanation
Indices: 68126903--68126949 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
68126893 CATGCCGAGG
68126903 TATTTTCAAATTC
1 TATTTTCAAATTC
68126916 TATTGTTCAAATTC
1 TATT-TTCAAATTC
* *
68126930 TGTTTT-AATTTC
1 TATTTTCAAATTC
68126942 TACTTTTC
1 TA-TTTTC
68126950 CAAAATTAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 6 0.21
13 10 0.36
14 12 0.43
ACGTcount: A:0.23, C:0.15, G:0.04, T:0.57
Consensus pattern (13 bp):
TATTTTCAAATTC
Found at i:68127070 original size:174 final size:172
Alignment explanation
Indices: 68126743--68127109 Score: 420
Period size: 174 Copynumber: 2.1 Consensus size: 172
68126733 CATGCCGAGG
* *
68126743 TATTTTCAAATTCTGTTTTTATCTTCTAGTTTTCAAAAGTCAACTCATATTGCGAGAGGTAAGTT
1 TATTTTCAAATTCTGTTTTAATCTTCTACTTTTCAAAAGTCAACTCATATTGCGAGAGGTAAGTT
** * * * * *
68126808 GAGCCTTGGTTCACGTATTGAGGTATTTTCAATTTCTACTTTTCAATCAACTCATATTGCGAGAG
66 GAGCCTCAGATCACG-ACTGAAGTATTTTCAATTTATACTTTACAATCAACTCATATTGCGAGAG
68126873 GTGAGTTGAACTTCGGGTCACATGCCGAGGTATTTTCAAATTC
130 GTGAGTTGAACTTCGGGTCACATGCCGAGGTATTTTCAAATTC
* *
68126916 TATTGTTCAAATTCTGTTTTAAT-TTCTACTTTTCCAAAA-TTAACTCATATTGCGAGAGGTGAG
1 TATT-TTCAAATTCTGTTTTAATCTTCTACTTTT-CAAAAGTCAACTCATATTGCGAGAGGTAAG
* *
68126979 TTGAGCCTCAGATCACG-CTGAAGTATTTTCAGTTTAT-GTTTCAAAACAATCAACTCATATTGC
64 TTGAGCCTCAGATCACGACTGAAGTATTTTCAATTTATACTTT----ACAATCAACTCATATTGC
* * * * * **
68127042 GTGAGGTGAGTTGAGCCTT-GGTTCACATGCTGTGGTATTTTCAGTTTC
125 GAGAGGTGAGTTGA-ACTTCGGGTCACATGCCGAGGTATTTTCAAATTC
*
68127090 TGTTTTTCAAATTACTGTTT
1 T-ATTTTCAAATT-CTGTTT
68127110 GTCAAAAAGT
Statistics
Matches: 164, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
170 3 0.02
171 16 0.10
173 49 0.30
174 85 0.52
175 11 0.07
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.40
Consensus pattern (172 bp):
TATTTTCAAATTCTGTTTTAATCTTCTACTTTTCAAAAGTCAACTCATATTGCGAGAGGTAAGTT
GAGCCTCAGATCACGACTGAAGTATTTTCAATTTATACTTTACAATCAACTCATATTGCGAGAGG
TGAGTTGAACTTCGGGTCACATGCCGAGGTATTTTCAAATTC
Found at i:68129275 original size:21 final size:20
Alignment explanation
Indices: 68129251--68129295 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
68129241 TATAAACAAC
*
68129251 ATTAAATTGCTCAATATGACA
1 ATTAAATT-CTCAAAATGACA
**
68129272 ATTATGTTCTCAAAATGACA
1 ATTAAATTCTCAAAATGACA
68129292 ATTA
1 ATTA
68129296 TGTTACTACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (20 bp):
ATTAAATTCTCAAAATGACA
Found at i:68129289 original size:20 final size:20
Alignment explanation
Indices: 68129260--68129299 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
68129250 CATTAAATTG
*
68129260 CTCAATATGACAATTATGTT
1 CTCAAAATGACAATTATGTT
68129280 CTCAAAATGACAATTATGTT
1 CTCAAAATGACAATTATGTT
68129300 ACTACATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (20 bp):
CTCAAAATGACAATTATGTT
Found at i:68129513 original size:30 final size:30
Alignment explanation
Indices: 68129468--68129527 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
68129458 ATTTAATACG
*
68129468 AACTTTAGCAAAATTACATTTTTGCCCCTA
1 AACTTTAGCAAAATTACACTTTTGCCCCTA
* *
68129498 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGCAAAATTACACTTTTGCCCCTA
68129528 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTAGCAAAATTACACTTTTGCCCCTA
Found at i:68131299 original size:7 final size:7
Alignment explanation
Indices: 68131287--68131313 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
68131277 ATTCCCTTCT
68131287 CCTCTCC
1 CCTCTCC
68131294 CCTCTCC
1 CCTCTCC
68131301 CCTCTCC
1 CCTCTCC
68131308 CCTCTC
1 CCTCTC
68131314 TTTTTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.70, G:0.00, T:0.30
Consensus pattern (7 bp):
CCTCTCC
Found at i:68131817 original size:3 final size:3
Alignment explanation
Indices: 68131781--68131847 Score: 59
Period size: 3 Copynumber: 23.0 Consensus size: 3
68131771 TTATTTAATT
* * * *
68131781 TTA TTA TT- TT- TTA TAA TT- TTA TCA TTA CTA TTA TTA TTA TTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
68131826 TTA TTG TTA TTA TTA TATA TTA
1 TTA TTA TTA TTA TTA T-TA TTA
68131848 GTATATACTC
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
2 6 0.12
3 42 0.82
4 3 0.06
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:68131949 original size:30 final size:30
Alignment explanation
Indices: 68131915--68132010 Score: 88
Period size: 30 Copynumber: 3.1 Consensus size: 30
68131905 ACTTTATTCT
68131915 AATATTATGCTATGCTTGCTTTTATATTTC
1 AATATTATGCTATGCTTGCTTTTATATTTC
** ** *
68131945 AATATTAT--TATTATTTTTTATCTACTTTATTC
1 AATATTATGCTATGCTTGCTT-T-TA-TAT-TTC
68131977 TAATATTATGCTATGCTTGCTTTTATATTTC
1 -AATATTATGCTATGCTTGCTTTTATATTTC
68132008 AAT
1 AAT
68132011 GTCTTTATTA
Statistics
Matches: 49, Mismatches: 10, Indels: 14
0.67 0.14 0.19
Matches are distributed among these distances:
28 7 0.14
29 1 0.02
30 13 0.27
31 5 0.10
32 5 0.10
33 10 0.20
34 1 0.02
35 7 0.14
ACGTcount: A:0.26, C:0.11, G:0.06, T:0.56
Consensus pattern (30 bp):
AATATTATGCTATGCTTGCTTTTATATTTC
Found at i:68132050 original size:31 final size:31
Alignment explanation
Indices: 68131997--68132065 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
68131987 CTATGCTTGC
*
68131997 TTTTATATTTCAATGTCTTTATTACATTTGT
1 TTTTATATTTCAATATCTTTATTACATTTGT
* * *
68132028 TTTTGTATTTCAATAT-TATTATTATATTTAT
1 TTTTATATTTCAATATCT-TTATTACATTTGT
*
68132059 TATTATA
1 TTTTATA
68132066 ATAGTGTATA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (31 bp):
TTTTATATTTCAATATCTTTATTACATTTGT
Found at i:68132285 original size:20 final size:21
Alignment explanation
Indices: 68132262--68132314 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
68132252 GTTATATACA
*
68132262 TATATATATTATGTGTATT-T
1 TATATATATTATGTATATTAT
68132282 TATATATATTATGTATATTAT
1 TATATATATTATGTATATTAT
* *
68132303 TATTTTTATTAT
1 TATATATATTAT
68132315 ACATATTACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 18 0.62
21 11 0.38
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (21 bp):
TATATATATTATGTATATTAT
Found at i:68132601 original size:27 final size:28
Alignment explanation
Indices: 68132571--68132637 Score: 84
Period size: 27 Copynumber: 2.4 Consensus size: 28
68132561 ATTCTATTAT
*
68132571 ATTTTTCATATTATATCATGTATATAC-
1 ATTTTTCATATTATATCATGTACATACA
* *
68132598 ATTTTTCATA-TATGTCATGTACATGCA
1 ATTTTTCATATTATATCATGTACATACA
68132625 ATTTTTCAATATT
1 ATTTTTC-ATATT
68132638 CATTTTATAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 13 0.38
27 17 0.50
28 3 0.09
29 1 0.03
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.51
Consensus pattern (28 bp):
ATTTTTCATATTATATCATGTACATACA
Found at i:68132615 original size:26 final size:25
Alignment explanation
Indices: 68132571--68132649 Score: 81
Period size: 27 Copynumber: 3.1 Consensus size: 25
68132561 ATTCTATTAT
68132571 ATTTTTCATATTATATCATGTATATAC
1 ATTTTTCATA-TAT-TCATGTATATAC
* *
68132598 ATTTTTCATATATGTCATGTACATGC
1 ATTTTTCATATAT-TCATGTATATAC
*
68132624 AATTTTTCA-ATATTCAT-TTTATAC
1 -ATTTTTCATATATTCATGTATATAC
68132648 AT
1 AT
68132650 ATAAATGTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
23 2 0.04
24 4 0.09
25 4 0.09
26 17 0.38
27 18 0.40
ACGTcount: A:0.32, C:0.13, G:0.05, T:0.51
Consensus pattern (25 bp):
ATTTTTCATATATTCATGTATATAC
Found at i:68133614 original size:27 final size:27
Alignment explanation
Indices: 68133555--68133648 Score: 72
Period size: 25 Copynumber: 3.6 Consensus size: 27
68133545 ACTATATTAC
* *
68133555 ATTTTTTACATATTATCTTATGTATAT
1 ATTTTTTACATACTATATTATGTATAT
*
68133582 ATTTTTTTA-ATAACTATATTATGTATGT
1 A-TTTTTTACAT-ACTATATTATGTATAT
** * *
68133610 A-TTTTTA-ACGCTATATTATATACAT
1 ATTTTTTACATACTATATTATGTATAT
68133635 A-TTTTTA-ATACTAT
1 ATTTTTTACATACTAT
68133649 GTATATACCT
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
25 24 0.44
26 7 0.13
27 3 0.05
28 21 0.38
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.55
Consensus pattern (27 bp):
ATTTTTTACATACTATATTATGTATAT
Found at i:68133648 original size:25 final size:25
Alignment explanation
Indices: 68133585--68133656 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
68133575 TGTATATATT
* **
68133585 TTTTTAATAACTATATTATGTATGTA
1 TTTTTAAT-ACTATATTATATACATA
**
68133611 TTTTTAACGCTATATTATATACATA
1 TTTTTAATACTATATTATATACATA
*
68133636 TTTTTAATACTAT-GTATATAC
1 TTTTTAATACTATATTATATAC
68133657 CTTTTATTCC
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
24 7 0.18
25 24 0.63
26 7 0.18
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
TTTTTAATACTATATTATATACATA
Found at i:68142788 original size:3 final size:3
Alignment explanation
Indices: 68142769--68142810 Score: 50
Period size: 3 Copynumber: 13.7 Consensus size: 3
68142759 TCTATGTACC
*
68142769 AAT AAT ATT AAT AAAT AAT AGAT AAT AAT AA- AAT AAT AAT AA
1 AAT AAT AAT AAT -AAT AAT A-AT AAT AAT AAT AAT AAT AAT AA
68142811 CGATAATAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 26 0.76
4 6 0.18
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:68142815 original size:23 final size:21
Alignment explanation
Indices: 68142782--68142824 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
68142772 AATATTAATA
68142782 AATAATAGATAATAATAAAAT
1 AATAATAGATAATAATAAAAT
*
68142803 AATAATAACGATAATAGTAAAA
1 AATAAT-A-GATAATAATAAAA
68142825 ATACAAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 1 0.05
23 12 0.63
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (21 bp):
AATAATAGATAATAATAAAAT
Found at i:68143006 original size:18 final size:18
Alignment explanation
Indices: 68142954--68143008 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
68142944 ACATAATAAT
*
68142954 AATAT-ATACTAATATT-
1 AATATAATAATAATATTA
* * *
68142970 TATA-AATAATAAGAGTA
1 AATATAATAATAATATTA
68142987 AATATAATAATAATATTA
1 AATATAATAATAATATTA
68143005 AATA
1 AATA
68143009 ACAATGATAT
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
16 11 0.38
17 3 0.10
18 15 0.52
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (18 bp):
AATATAATAATAATATTA
Found at i:68143716 original size:23 final size:23
Alignment explanation
Indices: 68143671--68143717 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
68143661 GGTATTTTTT
* *
68143671 TGTTCTTTTTTTTATTTTTTATA
1 TGTTCTTTTTTTTATTGTATATA
68143694 TGTTCTTTATTTTTA-TGTATATA
1 TGTTCTTT-TTTTTATTGTATATA
68143717 T
1 T
68143718 ACGTATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.17, C:0.04, G:0.06, T:0.72
Consensus pattern (23 bp):
TGTTCTTTTTTTTATTGTATATA
Found at i:68145400 original size:15 final size:16
Alignment explanation
Indices: 68145367--68145400 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
68145357 TTGATTTTTT
68145367 AAAAATATGAATTGAA
1 AAAAATATGAATTGAA
68145383 AAAAATA-GAAATTGAA
1 AAAAATATG-AATTGAA
68145399 AA
1 AA
68145401 TATCTCAGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 16 0.94
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.21
Consensus pattern (16 bp):
AAAAATATGAATTGAA
Found at i:68145445 original size:89 final size:88
Alignment explanation
Indices: 68145119--68145473 Score: 371
Period size: 87 Copynumber: 4.0 Consensus size: 88
68145109 TGATTTTTTG
* * *
68145119 AAAAATAGAATTTGAAAATACCTCAGCGTG--CCTAGGTTCAACTCACATCTCGCAATATGAGTT
1 AAAAATAGAAATTGAAAATACCTCAGCGTGACCCGAGGTTCAACTCACCTCTCGCAATATGAGTT
68145182 GATTTTTGAAAAATATAAATTGA
66 GATTTTTGAAAAATATAAATTGA
* * * * * * * *
68145205 AAAAACAGAAATTGAAAATACCTCCGTATGTGAACCAAGGTTCAACTCACTTTTCGCAATATGAA
1 AAAAATAGAAATTGAAAATACCTCAG--CGTGACCCGAGGTTCAACTCACCTCTCGCAATATGAG
*
68145270 TTGATTTTTGAAAAATAGAAA-TG-
64 TTGATTTTTGAAAAATATAAATTGA
* * *
68145293 -AAAATAGAATTTGAAAATACCTCGGCATGTGACCCGAGGTTCAACTCATCTCTCGCAATATGAG
1 AAAAATAGAAATTGAAAATACCTCAGC--GTGACCCGAGGTTCAACTCACCTCTCGCAATATGAG
* *
68145357 TTGATTTTTTAAAAATATGAATTGAA
64 TTGATTTTTGAAAAATATAAATTG-A
* * ** * *
68145383 AAAAATAGAAATTGAAAATATCTCAGCGTGTCTTGAGGCTCAACTTC-CCTATCGCAATATGAGT
1 AAAAATAGAAATTGAAAATACCTCAGCGTGACCCGAGGTTCAAC-TCACCTCTCGCAATATGAGT
*** *
68145447 TGATTTTTTTGAAACATAAATTGA
65 TGATTTTTGAAAAATATAAATTGA
68145471 AAA
1 AAA
68145474 TACCTCGGCA
Statistics
Matches: 223, Mismatches: 35, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
86 23 0.10
87 70 0.31
88 9 0.04
89 49 0.22
90 49 0.22
91 23 0.10
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (88 bp):
AAAAATAGAAATTGAAAATACCTCAGCGTGACCCGAGGTTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAATATAAATTGA
Found at i:68145475 original size:177 final size:172
Alignment explanation
Indices: 68145120--68145454 Score: 426
Period size: 177 Copynumber: 1.9 Consensus size: 172
68145110 GATTTTTTGA
*
68145120 AAAATAGAATTTGAAAATACCTCAGCGTGCCTAGGTTCAACTCACATCTCGCAATATGAGTTGAT
1 AAAATAGAATTTGAAAATACCTCAGCGTGCCGAGGTTCAACTCACATCTCGCAATATGAGTTGAT
* * *
68145185 TTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAAATACCTCCGTATGTGAACCAAGGTTCAA
66 TTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAAATACCTCAG-ACGTGAACCAAGGCTCAA
* *
68145250 CTCACTTTTCGCAATATGAATTGATTTTTGAAAAATAGAAATG
130 CTCACCTATCGCAATATGAATTGATTTTTGAAAAATAGAAATG
*
68145293 AAAATAGAATTTGAAAATACCTCGGCATGTGACCCGAGGTTCAACTCATC-TCTCGCAATATGAG
1 AAAATAGAATTTGAAAATACCTCAGC--GTG--CCGAGGTTCAACTCA-CATCTCGCAATATGAG
* * * * * **
68145357 TTGATTTTTTAAAAATATGAATTGAAAAAAATAGAAATTGAAAATATCTCAG-CGTG-TCTTGAG
61 TTGATTTTTGAAAAATATAAATTG-AAAAAACAGAAATTGAAAATACCTCAGACGTGAAC-CAAG
*
68145420 GCTCAACTTC-CCTATCGCAATATGAGTTGATTTTT
124 GCTCAAC-TCACCTATCGCAATATGAATTGATTTTT
68145455 TTGAAACATA
Statistics
Matches: 139, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
173 25 0.18
175 4 0.03
176 33 0.24
177 52 0.37
178 25 0.18
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (172 bp):
AAAATAGAATTTGAAAATACCTCAGCGTGCCGAGGTTCAACTCACATCTCGCAATATGAGTTGAT
TTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAAATACCTCAGACGTGAACCAAGGCTCAAC
TCACCTATCGCAATATGAATTGATTTTTGAAAAATAGAAATG
Found at i:68145515 original size:75 final size:74
Alignment explanation
Indices: 68145417--68145696 Score: 365
Period size: 75 Copynumber: 3.8 Consensus size: 74
68145407 AGCGTGTCTT
* * * *
68145417 GAGGCTCAACTTC-CCTATCGCAATATGAGTTGATTTTTTTG-AAACATAAATTGAAAATACCTC
1 GAGGCTCAA-TTCACCTCTAGCAATATGAATTGA--TTTTTGAAAACATAAATTGAAAATACCTT
68145480 GGCATGTGACCC
63 GGCATGTGACCC
*
68145492 GAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTCGAAAAACATAAATTGAAAATACCTTGG
1 GAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTG-AAAACATAAATTGAAAATACCTTGG
68145557 CATGTGACCC
65 CATGTGACCC
*
68145567 GAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAGACATAAATTGAAAATACCTTAG
1 GAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAA-ACATAAATTGAAAATACCTTGG
68145632 C--GTG-CCC
65 CATGTGACCC
* * *
68145639 TAAGGCTCAACTCACCTCTCGCAATAT-AAGTTGATTTTTGAAAAGCATAAATTGAAAA
1 -GAGGCTCAATTCACCTCTAGCAATATGAA-TTGATTTTTGAAAA-CATAAATTGAAAA
68145697 AAGGGAAATC
Statistics
Matches: 188, Mismatches: 10, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
72 6 0.03
73 57 0.30
74 6 0.03
75 119 0.63
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (74 bp):
GAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTTGAAAACATAAATTGAAAATACCTTGGC
ATGTGACCC
Found at i:68145673 original size:148 final size:148
Alignment explanation
Indices: 68145417--68145696 Score: 372
Period size: 148 Copynumber: 1.9 Consensus size: 148
68145407 AGCGTGTCTT
* * *
68145417 GAGGCTCAACTTCCCTATCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCGG
1 GAGGCTCAACTTCCCTATAGCAATATGAATTGA-TTTTTTGAAACATAAATTGAAAATACCTCAG
* *
68145482 CATGTGACCCGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTCGAAAAACATAAATTGAA
65 CA-GTGACCCAAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTCGAAAAACATAAATTGAA
68145547 AATACCTTGGCATGTGACCC
129 AATACCTTGGCATGTGACCC
* *
68145567 GAGGCTCAA-TTCACCTCTAGCAATATGAATTGA-TTTTTGAAAGACATAAATTGAAAATACCTT
1 GAGGCTCAACTTC-CCTATAGCAATATGAATTGATTTTTTG-AA-ACATAAATTGAAAATACCTC
* * *
68145630 AGC-GTG-CCCTAAGGCTCAACTCACCTCTCGCAATAT-AAGTTGATTTTTGAAAAGCATAAATT
63 AGCAGTGACCC-AAGGCTCAACTCACCTCTAGCAATATGAA-TTGATTTTCGAAAAACATAAATT
68145692 GAAAA
126 GAAAA
68145697 AAGGGAAATC
Statistics
Matches: 115, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
147 5 0.04
148 58 0.50
149 5 0.04
150 47 0.41
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (148 bp):
GAGGCTCAACTTCCCTATAGCAATATGAATTGATTTTTTGAAACATAAATTGAAAATACCTCAGC
AGTGACCCAAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTCGAAAAACATAAATTGAAAA
TACCTTGGCATGTGACCC
Found at i:68145777 original size:88 final size:87
Alignment explanation
Indices: 68145614--68145784 Score: 263
Period size: 88 Copynumber: 1.9 Consensus size: 87
68145604 TGAAAGACAT
* *
68145614 AAATTGAAAATACCTTAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTG
1 AAATCGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTG
68145679 AAAAGCATAAATTGAAAAAAGGG
66 AAAA-CATAAATTGAAAAAAGGG
* * *
68145702 AAATCGAAAATACCTCAGTGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTT
1 AAATCGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATAAGTTG--ATTTT
68145767 TGAAAA-ATAAATTGAAAA
64 TGAAAACATAAATTGAAAA
68145785 TACCTCAGCG
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
88 65 0.86
90 11 0.14
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (87 bp):
AAATCGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTG
AAAACATAAATTGAAAAAAGGG
Found at i:68145815 original size:73 final size:72
Alignment explanation
Indices: 68145702--68145838 Score: 202
Period size: 73 Copynumber: 1.9 Consensus size: 72
68145692 GAAAAAAGGG
* * * *
68145702 AAATCGAAAATACCTCAGTGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTT
1 AAATCGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTAGCAATATGAATTGAT-TTTT
68145767 TGAAAAAT
65 TGAAAAAT
* * *
68145775 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTT
1 AAATCGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTT
68145839 GTTTGAAAAC
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
72 4 0.07
73 53 0.93
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (72 bp):
AAATCGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTT
GAAAAAT
Found at i:68157828 original size:18 final size:18
Alignment explanation
Indices: 68157805--68157852 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
68157795 GAGTATGTAC
*
68157805 GTAATATATATATAAATA
1 GTAATATATATAGAAATA
68157823 GTAATAGTAT-TAGAAATA
1 GTAATA-TATATAGAAATA
*
68157841 -TACTATATATAG
1 GTAATATATATAG
68157853 TGTTTGAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 3 0.12
17 7 0.27
18 13 0.50
19 3 0.12
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (18 bp):
GTAATATATATAGAAATA
Found at i:68174145 original size:30 final size:30
Alignment explanation
Indices: 68174098--68174260 Score: 227
Period size: 30 Copynumber: 5.4 Consensus size: 30
68174088 TAGGTACAAG
** *
68174098 TGGTGGTGGAGCAAGTGTGGTTAGTGGAGT
1 TGGTGGTGGAAAAAGTGTGGCTAGTGGAGT
* ** * *
68174128 AGGTAATGGAACAAGTGTGGCTAGTGGATT
1 TGGTGGTGGAAAAAGTGTGGCTAGTGGAGT
*
68174158 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGTGTGGCTAGTGGAGT
*
68174188 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGTGTGGCTAGTGGAGT
*
68174218 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGTGTGGCTAGTGGAGT
68174248 TGGTGGTGGAAAA
1 TGGTGGTGGAAAA
68174261 GGCTAAGATT
Statistics
Matches: 119, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 119 1.00
ACGTcount: A:0.25, C:0.04, G:0.46, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAAGTGTGGCTAGTGGAGT
Found at i:68175252 original size:75 final size:73
Alignment explanation
Indices: 68175052--68175277 Score: 310
Period size: 75 Copynumber: 3.0 Consensus size: 73
68175042 AAAACAGAAA
* *
68175052 TTGAAAAGCAAAAATTAAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAAAAATTAAAAAGACCTCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATAT
*
68175117 GAGTT-AATTT
63 GAGTTGATTTT
* * ** *
68175127 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAAAAATTAAAAAGACCTCAGCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGA
68175192 GTTGATTTT
65 GTTGATTTT
*
68175201 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACA-AAAATTAAAAAGACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATG
68175266 AGTTGATTTT
64 AGTTGATTTT
68175276 TT
1 TT
68175278 TTTACGAACA
Statistics
Matches: 133, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
73 35 0.26
74 15 0.11
75 83 0.62
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (73 bp):
TTGAAAAACAAAAATTAAAAAGACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:68175302 original size:14 final size:14
Alignment explanation
Indices: 68175283--68175310 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68175273 TTTTTTTTAC
68175283 GAACAGAAATTGAA
1 GAACAGAAATTGAA
68175297 GAACAGAAATTGAA
1 GAACAGAAATTGAA
68175311 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:68175357 original size:92 final size:91
Alignment explanation
Indices: 68175201--68175368 Score: 259
Period size: 92 Copynumber: 1.8 Consensus size: 91
68175191 AGTTGATTTT
* *
68175201 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATG
68175266 AGTTGATTTTTTTTTACGAACAGAAA
66 AGTTGATTTTTTTTTACGAACAGAAA
* *
68175292 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-AAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTAAGGCTCAACTCACCTCTCGCAAT
68175355 ATGAGTTGATTTTT
63 ATGAGTTGATTTTT
68175369 GACAAACAGA
Statistics
Matches: 70, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
90 15 0.21
91 13 0.19
92 40 0.57
93 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (91 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTTTACGAACAGAAA
Found at i:68175413 original size:54 final size:55
Alignment explanation
Indices: 68175331--68175439 Score: 166
Period size: 54 Copynumber: 2.0 Consensus size: 55
68175321 CATGTGAGCC
* * *
68175331 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA-AACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAA
* *
68175385 AAGGCTTAACTCACTTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAA
1 AAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAA
68175440 GAATACCTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
54 38 0.78
55 11 0.22
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (55 bp):
AAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAA
Found at i:68175613 original size:73 final size:74
Alignment explanation
Indices: 68175518--68176388 Score: 578
Period size: 73 Copynumber: 11.4 Consensus size: 74
68175508 ATTAAAAGGT
* * * * * * *
68175518 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAA-TTGAAATTACCTCATCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTATTGAAAAACAAAAATTTAAAAATACCTCAGCGTG
68175582 TCCTGAGGC
66 TCCTGAGGC
*
68175591 TCAACTCATCTCTCGCAATATGAGTTGATTTATTGAAAAACAAAAATTTAAAAATACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTATTGAAAAACAAAAATTTAAAAATACCTCAGCGT
68175656 GTCCTGAGGC
65 GTCCTGAGGC
* * * ** * * * * **
68175666 TCAACTCACCTATCGCAATATGAGTTGATTTTTTTTACGAATAGAAATTGAAGAACAGAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTATTGAAAAACAAAAATTTAA-AA-A-TACCT--
* * * *
68175731 AAAGACCTCAG-CATGTGAGC
59 -CAG-CGT--GTCCTGAG-GC
* * * * * * *
68175751 -CGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAA-TTGAAATTACCT
1 TC-A-ACTCA-----CCTCTCGCAATATGAGTTGATTATTGAAAAACAAAAATTTAAAAATACCT
*
68175814 CAGCGTGTCCCGAGGC
59 CAGCGTGTCCTGAGGC
* * *
68175830 TCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTATTGAAAAACAAAAATTTAAAAATACCTCAGCGTG
68175895 TCCTGAGGC
66 TCCTGAGGC
* * * * ** * * * **
68175904 TCAACTCACCTTTCGCAATAAGAGTTGATTTTTTTTACGAACAGAAATTAAAGAACAGAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTATTGAAAAACAAAAATTTAA-AA-A-TACCT--
* * * *
68175969 AAAGACCTCAG-CATGTGAGC
59 -CAG-CGT--GTCCTGAG-GC
* * * * * *
68175989 -CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAA-TTGAAATTACCT
1 TC-A-ACTCA-----CCTCTCGCAATATGAGTTGATTATTGAAAAACAAAAATTTAAAAATACCT
*
68176052 CAGCGTGTCTTGAGGC
59 CAGCGTGTCCTGAGGC
* * * * *
68176068 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTATTGAAAAACAAAAATTTAAAAATACCTCAGCGTG
*
68176132 TCTTGAGGC
66 TCCTGAGGC
* * * * *
68176141 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTATTGAAAAACAAAAATTTAAAAATACCTCAGCGTG
*
68176205 TCTTGAGGC
66 TCCTGAGGC
* * * * *
68176214 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTATTGAAAAACAAAAATTTAAAAATACCTCAGCGTG
68176278 TCCTGAGGC
66 TCCTGAGGC
* * * *
68176287 TCAACTCACCTCTAGCAATATGAGTTGATT-TTGAAAAACAAAAA-TTAAAAGTATCTCAACGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTATTGAAAAACAAAAATTTAAAAATACCTCAGCGTG
*
68176350 TCTTGAGGC
66 TCCTGAGGC
* * *
68176359 TCAACTCATCTTTCACAATATGAGTTGATT
1 TCAACTCACCTCTCGCAATATGAGTTGATT
68176389 TTCCTTGAAA
Statistics
Matches: 665, Mismatches: 89, Indels: 89
0.79 0.11 0.11
Matches are distributed among these distances:
72 61 0.09
73 299 0.45
74 66 0.10
75 51 0.08
76 34 0.05
77 4 0.01
78 10 0.02
79 12 0.02
80 9 0.01
81 4 0.01
82 8 0.01
83 4 0.01
84 10 0.02
85 12 0.02
86 8 0.01
87 4 0.01
88 4 0.01
89 29 0.04
91 36 0.05
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (74 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTATTGAAAAACAAAAATTTAAAAATACCTCAGCGTG
TCCTGAGGC
Found at i:68175620 original size:127 final size:128
Alignment explanation
Indices: 68175332--68175643 Score: 416
Period size: 128 Copynumber: 2.4 Consensus size: 128
68175322 ATGTGAGCCA
* *
68175332 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTAAAAGGCTTAACTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTTAACCC
* *
68175397 ACTTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAAGAATACCTCAGCGTGACCTG
66 ACCTCTCGCAACATGAGTTGATTCTTGAAACAACAAAAATTAAGAATACCTCAGCGTGACCTG
* * *
68175460 AGGCTCAACTCACCTATCGCAATATGAGCTGA-TTTTGAAAAAGTAGAAATTAAAAGG-TTCAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-CAGAAATTAAAAGGCTT-AAC
* * * * * *
68175523 CCACCTCTCGCAATATGAGTTGATTCTTGACA-AACAGAAATTGAA-ATTACCTCATCGTGTCCT
64 CCACCTCTCGCAACATGAGTTGATTCTTGAAACAACAAAAATT-AAGAATACCTCAGCGTGACCT
68175586 G
128 G
* *
68175587 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTATTGAAAAACAAAAATTTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TTGAAAAACAGAAA-TTAAAA
68175644 ATACCTCAGC
Statistics
Matches: 160, Mismatches: 18, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
127 65 0.41
128 81 0.51
129 14 0.09
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (128 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTTAACCC
ACCTCTCGCAACATGAGTTGATTCTTGAAACAACAAAAATTAAGAATACCTCAGCGTGACCTG
Found at i:68175960 original size:238 final size:237
Alignment explanation
Indices: 68175518--68176390 Score: 1302
Period size: 238 Copynumber: 3.8 Consensus size: 237
68175508 ATTAAAAGGT
* * *
68175518 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* *
68175583 CCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTATTGAAAAACAAAAATTTAAAAATAC
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TTGAAAAACAGAAATTTAAAAATAC
* *
68175648 CTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTTACGAATAGAAA
130 CTCAGCGTGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTTACGAACAGAAA
68175713 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
195 TT-AAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
*
68175757 TCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* *
68175822 CCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACC
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACC
*
68175887 TCAGCGTGTCCTGAGGCTCAACTCACCTTTCGCAATAAGAGTTGATTTTTTTTACGAACAGAAAT
131 TCAGCGTGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTTACGAACAGAAAT
68175952 TAAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
196 T-AAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
68175995 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* * * *
68176060 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAA-TTGAAATTACC
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACC
* *
68176124 TCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT--G-AC------
131 TCAGCGTGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTTACGAACAGAAAT
** * *
68176177 --A-AACAGAAATTGAAATTACCTCAGC--GTG-TCTTGAGGC
196 TAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGC-CGAGGC
68176214 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* * * *
68176279 CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAAACA-AAAATTAAAAGTATC
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACC
* * * *
68176342 TCAACGTGTCTTGAGGCTCAACTCATCTTTCACAATATGAGTTGATTTT
131 TCAGCGTGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTT
68176391 CCTTGAAAAA
Statistics
Matches: 593, Mismatches: 36, Indels: 28
0.90 0.05 0.04
Matches are distributed among these distances:
217 3 0.01
218 61 0.10
219 107 0.18
221 23 0.04
222 1 0.00
231 2 0.00
232 1 0.00
234 5 0.01
237 51 0.09
238 242 0.41
239 97 0.16
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (237 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACC
TCAGCGTGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTTACGAACAGAAAT
TAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
Found at i:68176223 original size:146 final size:146
Alignment explanation
Indices: 68175957--68176390 Score: 701
Period size: 146 Copynumber: 3.0 Consensus size: 146
68175947 GAAATTAAAG
** *
68175957 AACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
68176021 GATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAA
63 GATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAA
68176086 TATGAGTTGATTTTTGACA
128 TATGAGTTGATTTTTGACA
*
68176105 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
68176170 TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
68176235 GAGTTGATTTTTGACA
131 GAGTTGATTTTTGACA
*
68176251 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * * * * * * * *
68176315 TTTTGAAAAACAAAAATTAAAAGTATCTCAACGTGTCTTGAGGCTCAACTCATCTTTCACAATAT
66 TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
68176380 GAGTTGATTTT
131 GAGTTGATTTT
68176391 CCTTGAAAAA
Statistics
Matches: 270, Mismatches: 15, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
145 68 0.25
146 180 0.67
148 22 0.08
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (146 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTGACA
Found at i:68177299 original size:33 final size:33
Alignment explanation
Indices: 68177257--68177319 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
68177247 TTGATCCTTC
68177257 TTTTTTTTTGGATGCCCTTTTCGGGTTTTCTCT
1 TTTTTTTTTGGATGCCCTTTTCGGGTTTTCTCT
68177290 TTTTTTTTTGGATGCCCTTTTCGGGTTTTC
1 TTTTTTTTTGGATGCCCTTTTCGGGTTTTC
68177320 ATCTCAAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.03, C:0.17, G:0.19, T:0.60
Consensus pattern (33 bp):
TTTTTTTTTGGATGCCCTTTTCGGGTTTTCTCT
Found at i:68186799 original size:395 final size:393
Alignment explanation
Indices: 68186067--68186805 Score: 1010
Period size: 395 Copynumber: 1.9 Consensus size: 393
68186057 ATGGAAGAGG
* *
68186067 AAGGGGTGAGTTTGGGAAAACTCCGTGTATACAGAAACCCATCCAAAGCCCAAATCAGCTCGAGC
1 AAGGGGTGAGTTTGGGAAAACTCAGTGTATACAGAAACCCATCCAAAGCCCAAATCAGCTCAAGC
* *
68186132 CCATTGGGCCTAAGCCCTATTCAGATAACAGTACACAGTGGAACGAAGCCCTTTTCAGAATACAG
66 CCATTGGGCCTAAGCCCTATTCAGATAACAGTACACA-TAGAACGAAGCCCTTTTCAGAATACAA
* * * *
68186197 TAGCAAGGCCTTAGCCCTTTTTAACATAACAGTATGGCCCATAGGCCCAGTTCAGTAACATATGT
130 TA-CAAGGCCTTAGCCCTTATTAACATAACAGTATGGCCCATAGGCCCAGTTCAGAAACACATGC
* * *
68186262 AACAATATTAGTAATGAATGCAAGCCCAACTGGGGAGACTACTCAACCCACCAACCGCTACACTG
194 AACAATAATAG-AAT-AATGCAAGCCCAACTGGGGAGACTACTCAACCCACCAACCACTACACTC
68186327 CCCCGTACCAGCCCTACACTCCATGTGGGGAATATCTCAACCCACCCAGCCCTACACTCCACAGT
257 CCCCGTACCAGCCCTACACTCCATGTGGGGAATATCTCAACCCACCCAGCCCTACACTCCACAGT
68186392 TGCAGCAACGCTGCTCAAAACCAACCGCTACACTGCCCCGTACCAGCCCTACACTTGCGTGGATG
322 TGCAGCAACGCTGCTCAAAACCAACCGCTACACTGCCCCGTACCAGCCCTACACTTGCGTGGATG
68186457 AAAATAA
387 AAAATAA
* * * *
68186464 AAGGGGTGAGTTTGGGGAAACTCAGTGTGTA-AGGAAAACCCATTCAAAGCCCAAGTCAGCTCAA
1 AAGGGGTGAGTTTGGGAAAACTCAGTGTATACA-G-AAACCCATCCAAAGCCCAAATCAGCTCAA
* * ** * *
68186528 GCCTATTGGGCCTAAGCCC-ATTCAGGTAACAGTGGTAC-TAG-ACCAGAGCCCTTTTCAGATTA
64 GCCCATTGGGCCTAAGCCCTATTCAGATAACAGT-ACACATAGAACGA-AGCCCTTTTCAGAATA
* * * * * *
68186590 CAATA-AATTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCTATAGGCCTATTTCA-AAAT
127 CAATACAA---GGCCTTAG-CCCTTATTAACATAACAGTATGGCCCATAGGCCCAGTTCAGAAAC
** *
68186653 ACATGCAAC-ATCAATA-ACAT-ATGCAAGCCCATTTGGGGAGACTACTCAACCCACCAACCATT
188 ACATGCAACAAT-AATAGA-ATAATGCAAGCCCAACTGGGGAGACTACTCAACCCACCAACCACT
68186715 ACACTCCACCCGTACCAGCCCTACACTCCATGTGGGGAATATCTCAACCCACCCAGCCCTACACT
251 ACACTCC-CCCGTACCAGCCCTACACTCCATGTGGGGAATATCTCAACCCACCCAGCCCTACACT
68186780 CCACAGTTGCAGCAACGCTGCTCAAA
315 CCACAGTTGCAGCAACGCTGCTCAAA
68186806 TATCAGTGAG
Statistics
Matches: 301, Mismatches: 30, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
394 46 0.15
395 87 0.29
396 26 0.09
397 62 0.21
398 80 0.27
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (393 bp):
AAGGGGTGAGTTTGGGAAAACTCAGTGTATACAGAAACCCATCCAAAGCCCAAATCAGCTCAAGC
CCATTGGGCCTAAGCCCTATTCAGATAACAGTACACATAGAACGAAGCCCTTTTCAGAATACAAT
ACAAGGCCTTAGCCCTTATTAACATAACAGTATGGCCCATAGGCCCAGTTCAGAAACACATGCAA
CAATAATAGAATAATGCAAGCCCAACTGGGGAGACTACTCAACCCACCAACCACTACACTCCCCC
GTACCAGCCCTACACTCCATGTGGGGAATATCTCAACCCACCCAGCCCTACACTCCACAGTTGCA
GCAACGCTGCTCAAAACCAACCGCTACACTGCCCCGTACCAGCCCTACACTTGCGTGGATGAAAA
TAA
Found at i:68187308 original size:79 final size:79
Alignment explanation
Indices: 68187177--68187330 Score: 290
Period size: 79 Copynumber: 1.9 Consensus size: 79
68187167 AATGTCACAC
*
68187177 GAACTTACTTACCACTTTGTGGTGCTAGATCTAACAATTACTCTATGTCTTGAGAGCATTCGCAT
1 GAACTTACTTACCACTTTGCGGTGCTAGATCTAACAATTACTCTATGTCTTGAGAGCATTCGCAT
68187242 ACTCACAAGCCTTT
66 ACTCACAAGCCTTT
*
68187256 GAACTTACTTACCACTTTGCGGTGCTATATCTAACAATTACTCTATGTCTTGAGAGCATTCGCAT
1 GAACTTACTTACCACTTTGCGGTGCTAGATCTAACAATTACTCTATGTCTTGAGAGCATTCGCAT
68187321 ACTCACAAGC
66 ACTCACAAGC
68187331 ATATGAAATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (79 bp):
GAACTTACTTACCACTTTGCGGTGCTAGATCTAACAATTACTCTATGTCTTGAGAGCATTCGCAT
ACTCACAAGCCTTT
Found at i:68188539 original size:37 final size:37
Alignment explanation
Indices: 68188489--68188563 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
68188479 ATGCTCCACA
68188489 CGCCACCTTTTTAGGAGCTTAGTGGCGTCACCCTTGC
1 CGCCACCTTTTTAGGAGCTTAGTGGCGTCACCCTTGC
68188526 CGCCACCTTTTTAGGAGCTTAGTGGCGTCACCCTTGC
1 CGCCACCTTTTTAGGAGCTTAGTGGCGTCACCCTTGC
68188563 C
1 C
68188564 ACTTTACTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.13, C:0.33, G:0.24, T:0.29
Consensus pattern (37 bp):
CGCCACCTTTTTAGGAGCTTAGTGGCGTCACCCTTGC
Found at i:68193043 original size:3 final size:3
Alignment explanation
Indices: 68193035--68193077 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
68193025 TTAAATACTC
*
68193035 TTA TTA TTA TTAA TT- TTA TTA TTA TTA ATA TTA TTA TGTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
68193078 GTTTATGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 27 0.77
4 6 0.17
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:68193055 original size:15 final size:15
Alignment explanation
Indices: 68193035--68193077 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
68193025 TTAAATACTC
*
68193035 TTATTATTATTAATT
1 TTATTATTATTAATA
68193050 TTATTATTATTAATA
1 TTATTATTATTAATA
68193065 TTATTATGTATTA
1 TTATTAT-TATTA
68193078 GTTTATGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 21 0.81
16 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (15 bp):
TTATTATTATTAATA
Found at i:68193083 original size:15 final size:14
Alignment explanation
Indices: 68193035--68193083 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 14
68193025 TTAAATACTC
68193035 TTATTATTATTAATT
1 TTATTATTATTAA-T
68193050 TTATTATTATTAAT
1 TTATTATTATTAAT
*
68193064 ATTATTATGTATTAGT
1 -TTATTAT-TATTAAT
68193080 TTAT
1 TTAT
68193084 GTTTTATTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 1 0.03
15 24 0.77
16 6 0.19
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (14 bp):
TTATTATTATTAAT
Found at i:68193496 original size:27 final size:27
Alignment explanation
Indices: 68193451--68193502 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
68193441 TATTAGTTAC
*
68193451 GCATATATTCTTTACATTATCTTATGT
1 GCATATATTCTTTACATTATATTATGT
*
68193478 GCATATATT-TTTCATATTATATTAT
1 GCATATATTCTTT-ACATTATATTAT
68193503 ATACCTATCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.54
Consensus pattern (27 bp):
GCATATATTCTTTACATTATATTATGT
Found at i:68200561 original size:30 final size:29
Alignment explanation
Indices: 68200527--68200639 Score: 145
Period size: 30 Copynumber: 3.8 Consensus size: 29
68200517 CAAGTGCAGT
* ** *
68200527 TAGTGGAGTAGGTAATGGAACAAGTGTGAC
1 TAGTGGAGTTGGTGGTGGAA-AAGTGTGGC
*
68200557 TAGTGGATTTGGTGGTGGAAAAGGTGTGGC
1 TAGTGGAGTTGGTGGTGGAAAA-GTGTGGC
*
68200587 TAGTGGAGTTGGTGGTGGAAAAAGAGTGGC
1 TAGTGGAGTTGGTGGTGG-AAAAGTGTGGC
68200617 TAGTGGAGTTGGTGGTGGAAAAG
1 TAGTGGAGTTGGTGGTGGAAAAG
68200640 GCTAAGATTT
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
29 7 0.09
30 63 0.85
31 4 0.05
ACGTcount: A:0.27, C:0.04, G:0.44, T:0.26
Consensus pattern (29 bp):
TAGTGGAGTTGGTGGTGGAAAAGTGTGGC
Found at i:68200606 original size:60 final size:60
Alignment explanation
Indices: 68200527--68200640 Score: 165
Period size: 60 Copynumber: 1.9 Consensus size: 60
68200517 CAAGTGCAGT
* * *
68200527 TAGTGGAGTAGGTAATGGAACAAGTGTGACTAGTGGATTTGGTGGTGGAAAAGGTGTGGC
1 TAGTGGAGTAGGTAATGGAAAAAGAGTGACTAGTGGAGTTGGTGGTGGAAAAGGTGTGGC
* ** *
68200587 TAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
1 TAGTGGAGTAGGTAATGGAAAAAGAGTGACTAGTGGAGTTGGTGGTGGAAAAGG
68200641 CTAAGATTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 47 1.00
ACGTcount: A:0.26, C:0.04, G:0.45, T:0.25
Consensus pattern (60 bp):
TAGTGGAGTAGGTAATGGAAAAAGAGTGACTAGTGGAGTTGGTGGTGGAAAAGGTGTGGC
Found at i:68215664 original size:79 final size:79
Alignment explanation
Indices: 68215533--68215691 Score: 291
Period size: 79 Copynumber: 2.0 Consensus size: 79
68215523 GATAACCAGA
*
68215533 ATCATTTTACATATTTTAATAGTATTTTTTTAAAGTAATTAGAACTAACGTAAATGAACATTATT
1 ATCATTTTACATATTTTAATAGTATTTCTTTAAAGTAATTAGAACTAACGTAAATGAACATTATT
68215598 TACAAAGCTAGAAG
66 TACAAAGCTAGAAG
* *
68215612 ATCATTTTACATGTTTTAATAGTATTTCTTTAATGTAATTAGAACTAACGTAAATGAACATTATT
1 ATCATTTTACATATTTTAATAGTATTTCTTTAAAGTAATTAGAACTAACGTAAATGAACATTATT
68215677 TACAAAGCTAGAAG
66 TACAAAGCTAGAAG
68215691 A
1 A
68215692 CCTTTTGTTC
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (79 bp):
ATCATTTTACATATTTTAATAGTATTTCTTTAAAGTAATTAGAACTAACGTAAATGAACATTATT
TACAAAGCTAGAAG
Found at i:68217235 original size:14 final size:14
Alignment explanation
Indices: 68217216--68217243 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68217206 TACAATATTC
68217216 AAATAATAACAATA
1 AAATAATAACAATA
68217230 AAATAATAACAATA
1 AAATAATAACAATA
68217244 TAATGGTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAATAACAATA
Found at i:68219657 original size:16 final size:16
Alignment explanation
Indices: 68219636--68219705 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
68219626 TTTGGTTCAT
* *
68219636 TGTAATGGAATAGGGC
1 TGTAATTGAATAGAGC
*
68219652 TGTAATTGAATAAAGC
1 TGTAATTGAATAGAGC
68219668 TGTAATTGAATAGAGC
1 TGTAATTGAATAGAGC
*
68219684 TGTAATTGAATAGAGT
1 TGTAATTGAATAGAGC
68219700 TGTAAT
1 TGTAAT
68219706 CAGTAATTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.33
Consensus pattern (16 bp):
TGTAATTGAATAGAGC
Found at i:68219971 original size:17 final size:17
Alignment explanation
Indices: 68219946--68219978 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68219936 AATTATCATT
68219946 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
*
68219963 AAATTTAATTTAATAA
1 AAATATAATTTAATAA
68219979 CATTCTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:68225470 original size:17 final size:18
Alignment explanation
Indices: 68225448--68225481 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
68225438 CCAATCTGGG
68225448 CGTGTGGG-CCACACGGA
1 CGTGTGGGCCCACACGGA
68225465 CGTGTGGGCCCACACGG
1 CGTGTGGGCCCACACGG
68225482 GCATGTGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.15, C:0.32, G:0.41, T:0.12
Consensus pattern (18 bp):
CGTGTGGGCCCACACGGA
Found at i:68225488 original size:18 final size:17
Alignment explanation
Indices: 68225445--68225489 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
68225435 AAGCCAATCT
68225445 GGGCGTGTGGGCCACAC
1 GGGCGTGTGGGCCACAC
*
68225462 GGACGTGTGGGCCCACAC
1 GGGCGTGTGGG-CCACAC
*
68225480 GGGCATGTGG
1 GGGCGTGTGG
68225490 ATTTTGGGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.13, C:0.27, G:0.47, T:0.13
Consensus pattern (17 bp):
GGGCGTGTGGGCCACAC
Found at i:68228787 original size:15 final size:16
Alignment explanation
Indices: 68228767--68228804 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
68228757 TAAGTCTAAG
*
68228767 AAAATAACAAT-AAAC
1 AAAATAAAAATAAAAC
68228782 AAAATAAAAATAAAAC
1 AAAATAAAAATAAAAC
68228798 -AAATAAA
1 AAAATAAA
68228805 CTTAATGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAATAAAAATAAAAC
Found at i:68230476 original size:5 final size:5
Alignment explanation
Indices: 68230466--68230506 Score: 64
Period size: 5 Copynumber: 7.8 Consensus size: 5
68230456 AGTAAAAATT
68230466 ATAAA ATAAA ATAAA ATAAA ATAAA ATAATA ATAATA ATAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAA-A ATAA-A ATAA
68230507 TGATAGGGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 24 0.69
6 11 0.31
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (5 bp):
ATAAA
Found at i:68231409 original size:30 final size:30
Alignment explanation
Indices: 68231370--68231440 Score: 97
Period size: 30 Copynumber: 2.4 Consensus size: 30
68231360 CTCGTGTTTT
* *
68231370 CAGGTCGTGTGGGTCACATGACCGTGTCGC
1 CAGGCCGTGTGGGTCACACGACCGTGTCGC
* * *
68231400 CAGGCCGTGTGGGTCATACGGCCGTGTCGT
1 CAGGCCGTGTGGGTCACACGACCGTGTCGC
68231430 CAGGCCGTGTG
1 CAGGCCGTGTG
68231441 ACTCACTGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.11, C:0.27, G:0.39, T:0.23
Consensus pattern (30 bp):
CAGGCCGTGTGGGTCACACGACCGTGTCGC
Found at i:68234234 original size:23 final size:23
Alignment explanation
Indices: 68234207--68234260 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
68234197 CCTATGACTA
*
68234207 TTCTCGTTGAAATCAACTCATTC
1 TTCTCATTGAAATCAACTCATTC
*
68234230 TTCTCATTGGAATCAACTCATTC
1 TTCTCATTGAAATCAACTCATTC
68234253 TTCTCATT
1 TTCTCATT
68234261 AGCTACAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.24, C:0.26, G:0.07, T:0.43
Consensus pattern (23 bp):
TTCTCATTGAAATCAACTCATTC
Found at i:68236853 original size:40 final size:40
Alignment explanation
Indices: 68236798--68237009 Score: 270
Period size: 40 Copynumber: 5.3 Consensus size: 40
68236788 GATAACCGGA
* *
68236798 CTAAGATCCGAAGGCATTTATGCTAGTGACTATATCCAGG
1 CTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCAGG
* *
68236838 CTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCTAG-TGACTATATCCAGG
* *
68236878 CTAAGTCCCGAAGGCATTTGTGCTAGCGACTATATCCAGG
1 CTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCAGG
* * * *
68236918 CTAAGTCCCGAAGGCATTTATGCTAGTGACTGTATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCAGG
*
68236958 CTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCTAG-TGACTATATCCAGG
68236997 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
68237010 ATACTTGGGT
Statistics
Matches: 152, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.09
40 133 0.88
41 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCAGG
Found at i:68238862 original size:38 final size:38
Alignment explanation
Indices: 68238811--68238888 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
68238801 GAGGGATTCA
68238811 AATCGTTGTAGATGGTTTAAACCTATAGCCATAGAGGT
1 AATCGTTGTAGATGGTTTAAACCTATAGCCATAGAGGT
68238849 AATCGTTGTAGATGGTTTAAACCTATAGCCATAGAGGT
1 AATCGTTGTAGATGGTTTAAACCTATAGCCATAGAGGT
68238887 AA
1 AA
68238889 CCCATGGTGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (38 bp):
AATCGTTGTAGATGGTTTAAACCTATAGCCATAGAGGT
Found at i:68240459 original size:19 final size:19
Alignment explanation
Indices: 68240435--68240482 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
68240425 AAGAAGTTAA
68240435 AAGGAGATCTTCAATCTTG
1 AAGGAGATCTTCAATCTTG
68240454 AAGGAGATCTTCAATCTTG
1 AAGGAGATCTTCAATCTTG
68240473 AAGGAGATCT
1 AAGGAGATCT
68240483 GCTTCTGAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (19 bp):
AAGGAGATCTTCAATCTTG
Found at i:68241772 original size:15 final size:15
Alignment explanation
Indices: 68241752--68241782 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
68241742 AGACATAGGG
68241752 TGATTGTTCCTTGTC
1 TGATTGTTCCTTGTC
68241767 TGATTGTTCCTTGTC
1 TGATTGTTCCTTGTC
68241782 T
1 T
68241783 TTATCGGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.19, G:0.19, T:0.55
Consensus pattern (15 bp):
TGATTGTTCCTTGTC
Found at i:68255991 original size:7 final size:7
Alignment explanation
Indices: 68255932--68256008 Score: 57
Period size: 7 Copynumber: 11.0 Consensus size: 7
68255922 CACTAAAGTT
68255932 TAAACCC
1 TAAACCC
*
68255939 TTAACCC
1 TAAACCC
*
68255946 CAAACCC
1 TAAACCC
* *
68255953 TTACACCT
1 -TAAACCC
*
68255961 TAAACTC
1 TAAACCC
68255968 T-AACCC
1 TAAACCC
*
68255974 TAACCCC
1 TAAACCC
68255981 TAAACCC
1 TAAACCC
* *
68255988 TAAATCA
1 TAAACCC
*
68255995 TAATCCC
1 TAAACCC
68256002 TAAACCC
1 TAAACCC
68256009 ATAATTCATC
Statistics
Matches: 50, Mismatches: 18, Indels: 4
0.69 0.25 0.06
Matches are distributed among these distances:
6 5 0.10
7 41 0.82
8 4 0.08
ACGTcount: A:0.38, C:0.42, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:68256077 original size:21 final size:21
Alignment explanation
Indices: 68256051--68256135 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
68256041 ACTCCTAAAC
*
68256051 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* *
68256072 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
68256097 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
*
68256118 CTTAAATCATAAACCATA
1 CTTAAACCATAAACCATA
68256136 AACTATAATG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 31 0.60
22 3 0.06
24 3 0.06
25 15 0.29
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:68256088 original size:46 final size:46
Alignment explanation
Indices: 68256035--68256128 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
68256025 CTTCAAATAC
*
68256035 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
*
68256081 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAATCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
68256127 TA
1 TA
68256129 AACCATAAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
Found at i:68256130 original size:7 final size:7
Alignment explanation
Indices: 68256046--68256143 Score: 52
Period size: 7 Copynumber: 13.4 Consensus size: 7
68256036 AGTTAACTCC
*
68256046 TAAACCT
1 TAAACCA
*
68256053 TAAACCC
1 TAAACCA
68256060 TAAACCA
1 TAAACCA
* * *
68256067 TATATCT
1 TAAACCA
68256074 TAAACCA
1 TAAACCA
68256081 TAGTTAACTCA
1 TA---AAC-CA
*
68256092 TAAACCT
1 TAAACCA
*
68256099 TAAACCC
1 TAAACCA
68256106 TAAACCA
1 TAAACCA
* * *
68256113 TATATCT
1 TAAACCA
*
68256120 TAAATCA
1 TAAACCA
68256127 TAAACCA
1 TAAACCA
*
68256134 TAAACTA
1 TAAACCA
68256141 TAA
1 TAA
68256144 TGATAATTAA
Statistics
Matches: 69, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
7 59 0.86
8 3 0.04
10 3 0.04
11 4 0.06
ACGTcount: A:0.47, C:0.24, G:0.01, T:0.28
Consensus pattern (7 bp):
TAAACCA
Found at i:68256543 original size:41 final size:41
Alignment explanation
Indices: 68256301--68256518 Score: 332
Period size: 41 Copynumber: 5.4 Consensus size: 41
68256291 TTATGTGACT
*
68256301 TTTAGCGGCGTTTTTCCATAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* * **
68256342 TGTAGCGGCGTTTTTTCGTAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
68256383 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* * *
68256424 TTTAGCGGCATTTTGCCAAAAGTGCCGCTAATGCTCT-GTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* *
68256464 TTTAGCGGCATTTTGCCAAAAGCGCCGCTAATGCTCT-GTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
68256504 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
68256519 GTAAAAAACG
Statistics
Matches: 164, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 55 0.34
41 109 0.66
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.34
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
Found at i:68256588 original size:12 final size:12
Alignment explanation
Indices: 68256573--68256598 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68256563 GTTTTTTGAT
68256573 AAAACGCCGCTA
1 AAAACGCCGCTA
68256585 AAAACGCCGCTA
1 AAAACGCCGCTA
68256597 AA
1 AA
68256599 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:68259559 original size:220 final size:219
Alignment explanation
Indices: 68259172--68259766 Score: 949
Period size: 220 Copynumber: 2.7 Consensus size: 219
68259162 GTAACAGGCT
* * * * * * *
68259172 AAAG-CATAGCAGATATGACCTTCAGGTGTTTACGCTGAAGCGGATCCAAGATGATTTATCATCT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCT
68259236 CTGTATTGTTAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTATTG-TAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* *
68259301 CAAAGACATAGCAGATCTAACCTTTAGATGTTTTCACATAGAAGTAGATCCAAGATGATTTGGCA
130 CAAAGACATAGCAGATCTAACCTTCAGATGTCTTCACATAGAAGTAGATCCAAGATGATTTGGCA
68259366 TCCTTGCATTGACAAGGAGCAGATC
195 TCCTTGCATTGACAAGGAGCAGATC
68259391 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCT
* * * *
68259456 CTGTATTGATAGAGAACAAATCGAAGAAACATATTTGACATCTCCATATTTGACGGAGAGCAGAT
66 CTGTATTG-TAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* * *
68259521 CAAAGATATAGCAGATCTAACCTTCGGATGTCTTCACATCGAAGTAGATCCAAGATGATTTGGCA
130 CAAAGACATAGCAGATCTAACCTTCAGATGTCTTCACATAGAAGTAGATCCAAGATGATTTGGCA
*
68259586 TCCTTGCGTTGACAAGGAGCAGATC
195 TCCTTGCATTGACAAGGAGCAGATC
**
68259611 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCT
* *
68259676 CTGTACTGTCAGAGAACAAATCAAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTATTGT-AGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* *
68259741 CGAAGACATAGCAGATCTGACCTTCA
130 CAAAGACATAGCAGATCTAACCTTCA
68259767 TTAAAGCAGA
Statistics
Matches: 344, Mismatches: 30, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
219 5 0.01
220 339 0.99
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (219 bp):
AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCT
CTGTATTGTAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATC
AAAGACATAGCAGATCTAACCTTCAGATGTCTTCACATAGAAGTAGATCCAAGATGATTTGGCAT
CCTTGCATTGACAAGGAGCAGATC
Found at i:68259809 original size:78 final size:78
Alignment explanation
Indices: 68259707--68259923 Score: 344
Period size: 78 Copynumber: 2.8 Consensus size: 78
68259697 CAAAGAAATA
* * *
68259707 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
68259772 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
68259785 GATTTGGCATCTTTATATTAGACGGGGAGCAGATCGAAAACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
*
68259850 GCATATCCAAGAT
66 GCAGATCCAAGAT
* *
68259863 GATTTGGCATCTCTGTATTATACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
68259924 GTGTTTACAT
Statistics
Matches: 126, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 126 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
GCAGATCCAAGAT
Found at i:68259972 original size:92 final size:92
Alignment explanation
Indices: 68259863--68260134 Score: 247
Period size: 90 Copynumber: 3.0 Consensus size: 92
68259853 TATCCAAGAT
*
68259863 GATTTGGCATCTCTGTATTATACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTATACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCATGTGT
68259928 TTACATCGAAGCAGATCCAAGATGACA
66 TTACATCGAAGCAGATCCAAGATGACA
* * * * * * * * *
68259955 GATTTGGCATTTCTGTATTAGACGGGGAGCAAAT--TAGAGATAACAGATTTAACATCTC-TGTA
1 GATTTGGCATCTCTGTATTATACGGGGAGCAGATCGAAGACATAGCAGATCTAACCT-TCATGTG
** * * *
68260017 TTGT-CAGAGAA-CAAATCGAAGA-AACA
65 TT-TACATCGAAGCAGATCCAAGATGACA
** *
68260043 GATTTGGCATCTCCATATTCGATA--GAGAGCAGATCGAAGACATAGCAGATCTAACCTTCA-GA
1 GATTTGGCATCTCTGTATT--ATACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCATG-
*
68260105 TGTCTTCACATCGAAGTAGATCCAAGATGA
63 TGT-TT-ACATCGAAGCAGATCCAAGATGA
68260135 TTTGGCATCC
Statistics
Matches: 134, Mismatches: 33, Indels: 24
0.70 0.17 0.13
Matches are distributed among these distances:
88 27 0.20
89 12 0.09
90 46 0.34
91 4 0.03
92 36 0.27
93 8 0.06
94 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (92 bp):
GATTTGGCATCTCTGTATTATACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCATGTGT
TTACATCGAAGCAGATCCAAGATGACA
Found at i:68260054 original size:43 final size:45
Alignment explanation
Indices: 68259947--68260055 Score: 107
Period size: 45 Copynumber: 2.5 Consensus size: 45
68259937 AGCAGATCCA
* * * * * *
68259947 AGATGACAGATTTGGCATTTCTGTATTAGACGGGGAGCAAATTAG
1 AGATAACAGATTTGGCATCTCTGTATTAGACAGAGAACAAATGAG
** *
68259992 AGATAACAGATTTAACATCTCTGTATT-GTCAGAGAACAAATCGA-
1 AGATAACAGATTTGGCATCTCTGTATTAGACAGAGAACAAAT-GAG
68260036 AGA-AACAGATTTGGCATCTC
1 AGATAACAGATTTGGCATCTC
68260056 CATATTCGAT
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
43 15 0.29
44 13 0.25
45 24 0.46
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.28
Consensus pattern (45 bp):
AGATAACAGATTTGGCATCTCTGTATTAGACAGAGAACAAATGAG
Found at i:68260157 original size:556 final size:556
Alignment explanation
Indices: 68259444--68260574 Score: 1958
Period size: 556 Copynumber: 2.0 Consensus size: 556
68259434 GATCTAAGAT
* *
68259444 GATTTAACATCTCTGTATTGATAGAGAACAAATCGAAGAAACATATTTGACATCTCCATATTTGA
1 GATTTAACATCTCTGTATTGATAGAGAACAAATCGAAGAAACAGATTTGACATCTCCATATTCGA
* * *
68259509 CGGAGAGCAGATCAAAGATATAGCAGATCTAACCTTCGGATGTCTTCACATCGAAGTAGATCCAA
66 CAGAGAGCAGATCAAAGACATAGCAGATCTAACCTTCAGATGTCTTCACATCGAAGTAGATCCAA
*
68259574 GATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCAAAGACATAGCAGATTTGGCTTTCACGT
131 GATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCAAAGACATAACAGATTTGGCTTTCACGT
68259639 GTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAA
196 GTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAA
68259704 ATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATT
261 ATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATT
* *
68259769 AAAGCAGATCCAAGATGATTTGGCATCTTTATATTAGACGGGGAGCAGATCGAAAACACAGCAGA
326 AAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAAACACAACAGA
* *
68259834 TCTGACCTTCATTGAAGCATATCCAAGATGATTTGGCATCTCTGTATTATACGGGGAGCAGATCG
391 TCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCG
* *
68259899 AAGACATAGCAGATCTGACCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTGGCA
456 AAAACATAGCAGATCTGACCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTGGAA
* *
68259964 TTTCTGTATTAGACGGGGAGCAAATTAGAGATAACA
521 TCTCTGTATTAGACGGGGAGCAAATCAGAGATAACA
*
68260000 GATTTAACATCTCTGTATTG-TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCG
1 GATTTAACATCTCTGTATTGAT-AGAGAACAAATCGAAGAAACAGATTTGACATCTCCATATTCG
* *
68260064 ATAGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCAGATGTCTTCACATCGAAGTAGATCCA
65 ACAGAGAGCAGATCAAAGACATAGCAGATCTAACCTTCAGATGTCTTCACATCGAAGTAGATCCA
*
68260129 AGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACATAACAGATTTGGCTTTCACG
130 AGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCAAAGACATAACAGATTTGGCTTTCACG
* * *
68260194 TGTTTATGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAATAAATCGAAGA
195 TGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGA
* *
68260259 AATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGTAGATCTGACCTTTAT
260 AATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
* * *
68260324 TGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGCAGATCTAAGACACAACAG
325 TAAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAAACACAACAG
*
68260389 ATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATT
390 ATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATC
* *
68260454 GAAAACATAGCAGATTTGATCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTGGA
455 GAAAACATAGCAGATCTGACCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTGGA
*
68260519 ATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
520 ATCTCTGTATTAGACGGGGAGCAAATCAGAGATAACA
**
68260556 GATTTGGCATCTCTGTATT
1 GATTTAACATCTCTGTATT
68260575 AGACGGGGAG
Statistics
Matches: 542, Mismatches: 32, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
555 1 0.00
556 541 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (556 bp):
GATTTAACATCTCTGTATTGATAGAGAACAAATCGAAGAAACAGATTTGACATCTCCATATTCGA
CAGAGAGCAGATCAAAGACATAGCAGATCTAACCTTCAGATGTCTTCACATCGAAGTAGATCCAA
GATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCAAAGACATAACAGATTTGGCTTTCACGT
GTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAA
ATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATT
AAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAAACACAACAGA
TCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCG
AAAACATAGCAGATCTGACCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTGGAA
TCTCTGTATTAGACGGGGAGCAAATCAGAGATAACA
Found at i:68260365 original size:78 final size:78
Alignment explanation
Indices: 68260263--68260479 Score: 317
Period size: 78 Copynumber: 2.8 Consensus size: 78
68260253 CGAAGAAATA
* * * * *
68260263 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGTAGATCTGACCTTTATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
68260328 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
68260341 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCTAAGACACAACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
68260406 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
68260419 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAAACATAGCAGATTTGATCTTCAT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
68260480 GTGTTTACAT
Statistics
Matches: 123, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 123 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:68260557 original size:45 final size:45
Alignment explanation
Indices: 68260419--68260692 Score: 252
Period size: 45 Copynumber: 6.1 Consensus size: 45
68260409 GATCCAAGAT
* * * *
68260419 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAAACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG--AAGATAACA
* * * * * *
68260466 GATTT-G-ATCTTCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATC-TC-TGT-ATTAGA-CGGGGAGCAAATCGAAGATAACA
* *
68260511 GATTTGGAATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
* * *
68260556 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
* * *
68260600 GATTTAGCGTCTCTGTATTAAACGGGGAGCAAATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
* * * * *
68260645 GATTTGGCGTCTCTATATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
68260690 GAT
1 GAT
68260693 ATCACCTTCC
Statistics
Matches: 186, Mismatches: 32, Indels: 20
0.78 0.13 0.08
Matches are distributed among these distances:
43 1 0.01
44 42 0.23
45 113 0.61
46 6 0.03
47 19 0.10
48 4 0.02
49 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
Found at i:68260625 original size:89 final size:90
Alignment explanation
Indices: 68260493--68260692 Score: 287
Period size: 89 Copynumber: 2.2 Consensus size: 90
68260483 TTTACATCGA
* * ** * *
68260493 AGCAGATCCAAGAT-GACAGATTTGGAATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAG
1 AGCAGATCAAAGATAG-CAGATTTAGCGTCTCTGTATTAAACGGGGAGCAAATCGAAGATAACAG
*
68260557 ATTTGGCATCTCTGTATTAGACGGGG
65 ATTTGGCATCTCTATATTAGACGGGG
**
68260583 AGCAGATTGAAGA-AGCAGATTTAGCGTCTCTGTATTAAACGGGGAGCAAATCGAAGATAACAGA
1 AGCAGATCAAAGATAGCAGATTTAGCGTCTCTGTATTAAACGGGGAGCAAATCGAAGATAACAGA
*
68260647 TTTGGCGTCTCTATATTAGACGGGG
66 TTTGGCATCTCTATATTAGACGGGG
68260672 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
68260693 ATCACCTTCC
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
89 78 0.80
90 19 0.20
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTAGCGTCTCTGTATTAAACGGGGAGCAAATCGAAGATAACAGA
TTTGGCATCTCTATATTAGACGGGG
Found at i:68260668 original size:134 final size:136
Alignment explanation
Indices: 68260419--68260675 Score: 335
Period size: 134 Copynumber: 1.9 Consensus size: 136
68260409 GATCCAAGAT
* * *
68260419 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAAACATAGCAGATTTGATCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTG-AAACATAGCAGATTTGAGCGTCATCTGT
* * * *
68260484 TTACATCGAAGCAGATCCAAGATGACAGATTTGGAATCTCTGTATTAGACGGGGAGCAAATCGGA
65 TTACAACGAAGCAAATCCAAGATAACAGATTTGGAATCTCTATATTAGACGGGGAGCAAATCGGA
68260549 GATAACA
130 GATAACA
*
68260556 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTG-AAGA-AGCAGATTT-AGCGTC-TCTGTA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAACATAGCAGATTTGAGCGTCATCTGT-
* * **
68260617 TTA-AACGGGGAGCAAATCGAAGATAACAGATTTGGCGTCTCTATATTAGACGGGGAGCA
65 TTACAAC--GAAGCAAATCCAAGATAACAGATTTGGAATCTCTATATTAGACGGGGAGCA
68260676 GATCAAAGAT
Statistics
Matches: 105, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
132 6 0.06
133 7 0.07
134 53 0.50
135 3 0.03
137 36 0.34
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (136 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAACATAGCAGATTTGAGCGTCATCTGTT
TACAACGAAGCAAATCCAAGATAACAGATTTGGAATCTCTATATTAGACGGGGAGCAAATCGGAG
ATAACA
Found at i:68261145 original size:166 final size:168
Alignment explanation
Indices: 68260857--68261192 Score: 543
Period size: 166 Copynumber: 2.0 Consensus size: 168
68260847 GGGGCAGCTA
*
68260857 TAGACACTCAATTTTGCCCGAGCCCAGAAATAAGTCTAAAAACAAAAAAAAATGAAGTCCAAGTT
1 TAGACACTCAATTTTGCCCGAGCCCAGAAATAAGTC-----ACAAAAAAAAACGAAGTCCAAGTT
*
68260922 CAGTCCAGAATTACAAATATAATTTGGCAAGATCGGAATGACCCATTACTTGAAAAGATTTAAGG
61 CAGTCCAGAATTACAAATATAATTTGGCAAGATCAGAATGACCCATTACTTGAAAAGATTTAAGG
68260987 TCCATCTACAAGCTTGACTCATATGGAAATATAATCTTCACTG
126 TCCATCTACAAGCTTGACTCATATGGAAATATAATCTTCACTG
*
68261030 TAGACATTCAATTTTGCCCTG-GCCCAGAAATAAGTC-C-AAAAAAAACGAAGTCCAAGTTCAGT
1 TAGACACTCAATTTTGCCC-GAGCCCAGAAATAAGTCACAAAAAAAAACGAAGTCCAAGTTCAGT
** *
68261092 CCAGAATTACAAATATAATTTGGCCCGATCAGAATGGCCCATTACTTGAAAAGATTTAAGGTCCA
65 CCAGAATTACAAATATAATTTGGCAAGATCAGAATGACCCATTACTTGAAAAGATTTAAGGTCCA
68261157 TCTACAAGCTTGACTCATATGGAAATATAATCTTCA
130 TCTACAAGCTTGACTCATATGGAAATATAATCTTCA
68261193 ATGATATGCA
Statistics
Matches: 156, Mismatches: 6, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
166 121 0.78
167 1 0.01
173 33 0.21
174 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (168 bp):
TAGACACTCAATTTTGCCCGAGCCCAGAAATAAGTCACAAAAAAAAACGAAGTCCAAGTTCAGTC
CAGAATTACAAATATAATTTGGCAAGATCAGAATGACCCATTACTTGAAAAGATTTAAGGTCCAT
CTACAAGCTTGACTCATATGGAAATATAATCTTCACTG
Found at i:68261524 original size:17 final size:17
Alignment explanation
Indices: 68261500--68261534 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
68261490 TGTTTCCCTG
*
68261500 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
68261518 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
68261535 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:68261778 original size:285 final size:284
Alignment explanation
Indices: 68261268--68261833 Score: 1026
Period size: 285 Copynumber: 2.0 Consensus size: 284
68261258 ATCTTAACCG
* * *
68261268 TTGATGTAATTGATTTGTACCGTTGGATTTGAGGAGGTTCAACTATAAATAGAGGTCCCTCCCTT
1 TTGATGTAATTGATCTGTACCGTTGGATTTGAGGAGATTCAACCATAAATAGAGGTCCCTCCCTT
68261333 CATTGTAAAGACACTGGAGTTTTGGGAAACAATAAAAATTTTTGAGAGCTTTCACTAAAATTTCT
66 CATTGTAAAGACACTGGAGTTTTGGGAAACAATAAAAATTTTTGAGAGCTTTCACTAAAATTTCT
*
68261398 CTCCCACTTACATTCTTATTTTCTACGGTTTGTTCTTATTTTATTCTTTGTTCATCTTCGTTTTT
131 CTCCCACTTACATTCTTATTTTCTACAGTTTGTTCTTATTTTATTCTTTGTTCATCTTCGTTTTT
*
68261463 CAATCCTTTTTATTTTGATTTAATCCATGTTTCCCTGATTTTTTTATATATTTTAATTTTTTAAT
196 CAACCCTTTTTATTTTGATTTAATCCATGTTTCCCT-ATTTTTTTATATATTTTAATTTTTTAAT
68261528 AATTTTAGTATCATATCAAACTTTA
260 AATTTTAGTATCATATCAAACTTTA
*
68261553 TTGATGTAATTGATCTGTACCGTTGGATTTGAGGAGATTCAACCATAAATAGAGG-CCTCTCTCT
1 TTGATGTAATTGATCTGTACCGTTGGATTTGAGGAGATTCAACCATAAATAGAGGTCC-CTCCCT
* *
68261617 TCATTGTAAAGACACTGGAGTTTTGGGAAACAATAAAATTTTTTGAGAGCTTTCACTCAAATTTC
65 TCATTGTAAAGACACTGGAGTTTTGGGAAACAATAAAAATTTTTGAGAGCTTTCACTAAAATTTC
*
68261682 TCTCCCACTTACGTTCTTATTTTCTACAGTTTGTTCTTATTTTATTCTTTGTTCATCTTCGTTTT
130 TCTCCCACTTACATTCTTATTTTCTACAGTTTGTTCTTATTTTATTCTTTGTTCATCTTCGTTTT
68261747 TCAACCCTTTTTATTTTGATTTAATCCATGTTTCCCTATTTTTTTATATATTTTAATTTTTTAAT
195 TCAACCCTTTTTATTTTGATTTAATCCATGTTTCCCTATTTTTTTATATATTTTAATTTTTTAAT
68261812 AATTTTAGTATCATATCAAACT
260 AATTTTAGTATCATATCAAACT
68261834 CTTTCATTTT
Statistics
Matches: 271, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
284 52 0.19
285 219 0.81
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (284 bp):
TTGATGTAATTGATCTGTACCGTTGGATTTGAGGAGATTCAACCATAAATAGAGGTCCCTCCCTT
CATTGTAAAGACACTGGAGTTTTGGGAAACAATAAAAATTTTTGAGAGCTTTCACTAAAATTTCT
CTCCCACTTACATTCTTATTTTCTACAGTTTGTTCTTATTTTATTCTTTGTTCATCTTCGTTTTT
CAACCCTTTTTATTTTGATTTAATCCATGTTTCCCTATTTTTTTATATATTTTAATTTTTTAATA
ATTTTAGTATCATATCAAACTTTA
Found at i:68261808 original size:17 final size:17
Alignment explanation
Indices: 68261784--68261818 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
68261774 ATGTTTCCCT
*
68261784 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
68261802 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
68261819 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:68261885 original size:52 final size:52
Alignment explanation
Indices: 68261822--68261926 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
68261812 AATTTTAGTA
68261822 TCATATCAAACTCTTTCATTTTTTAATAATTTTTGTATTACTCTTAGGAAAT
1 TCATATCAAACTCTTTCATTTTTTAATAATTTTTGTATTACTCTTAGGAAAT
*
68261874 TCATATCAAACTCTTTCATTTTTTAATAATTTTTTTATTACTCTTAGGAAAT
1 TCATATCAAACTCTTTCATTTTTTAATAATTTTTGTATTACTCTTAGGAAAT
68261926 T
1 T
68261927 ATTTTTTTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.30, C:0.13, G:0.05, T:0.51
Consensus pattern (52 bp):
TCATATCAAACTCTTTCATTTTTTAATAATTTTTGTATTACTCTTAGGAAAT
Found at i:68267279 original size:17 final size:16
Alignment explanation
Indices: 68267248--68267281 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
68267238 GCTAAAGGTC
68267248 ATAAAAATTAAAAAAA
1 ATAAAAATTAAAAAAA
68267264 ATAAAATATTATAAAAAA
1 ATAAAA-ATTA-AAAAAA
68267282 GTCCTGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 4 0.25
18 6 0.38
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
ATAAAAATTAAAAAAA
Found at i:68267699 original size:21 final size:23
Alignment explanation
Indices: 68267674--68267715 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
68267664 GAAATAACAT
68267674 CACATT-GAACA-ATGAATTTAA
1 CACATTCGAACAGATGAATTTAA
*
68267695 CACATTCGAATAGATGAATTT
1 CACATTCGAACAGATGAATTT
68267716 TAAGCTCACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 4 0.22
23 8 0.44
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (23 bp):
CACATTCGAACAGATGAATTTAA
Found at i:68267918 original size:12 final size:12
Alignment explanation
Indices: 68267901--68267933 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
68267891 TTGAAGAACC
68267901 ATTAATCATGTT
1 ATTAATCATGTT
68267913 ATTAATCATGTT
1 ATTAATCATGTT
68267925 ATTAATCAT
1 ATTAATCAT
68267934 ATATGCAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (12 bp):
ATTAATCATGTT
Found at i:68271174 original size:15 final size:15
Alignment explanation
Indices: 68271127--68271175 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
68271117 CCCCTATCAC
*
68271127 CACCTCTTCCACCAC
1 CACCTCTTCCACCAT
* *
68271142 CTCCTCTTCC-TC-T
1 CACCTCTTCCACCAT
68271155 C-CCTCTTCCACCAT
1 CACCTCTTCCACCAT
68271169 CACCTCT
1 CACCTCT
68271176 GCCCCTAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
12 8 0.30
13 2 0.07
14 3 0.11
15 14 0.52
ACGTcount: A:0.12, C:0.57, G:0.00, T:0.31
Consensus pattern (15 bp):
CACCTCTTCCACCAT
Found at i:68271867 original size:41 final size:40
Alignment explanation
Indices: 68271810--68271890 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 40
68271800 TCATTTGTGT
68271810 CAAAATTAAAATTTCAAAAGTCGAAAAGTATAGGGACCAA
1 CAAAATTAAAATTTCAAAAGTCGAAAAGTATAGGGACCAA
*
68271850 NCAAAATTAAAATTTCAAAAGTCGAGAAGTATAGGGACCAA
1 -CAAAATTAAAATTTCAAAAGTCGAAAAGTATAGGGACCAA
68271891 GAATGATCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.20
Consensus pattern (40 bp):
CAAAATTAAAATTTCAAAAGTCGAAAAGTATAGGGACCAA
Found at i:68272357 original size:7 final size:7
Alignment explanation
Indices: 68272345--68272449 Score: 63
Period size: 7 Copynumber: 14.7 Consensus size: 7
68272335 ACTAATTAAT
68272345 CTAAACC
1 CTAAACC
68272352 CTAAACC
1 CTAAACC
*
68272359 TCTTAACCC
1 -C-TAAACC
*
68272368 CT-ATCC
1 CTAAACC
*
68272374 CATAAACA
1 C-TAAACC
*
68272382 CTAAACT
1 CTAAACC
68272389 CTAAACC
1 CTAAACC
*
68272396 CTTAACC
1 CTAAACC
*
68272403 CCAAACC
1 CTAAACC
*
68272410 CTTACACC
1 C-TAAACC
* *
68272418 TTAAACT
1 CTAAACC
68272425 CT-AACC
1 CTAAACC
68272431 CT-AACAC
1 CTAAAC-C
68272438 CTAAACC
1 CTAAACC
68272445 CTAAA
1 CTAAA
68272450 TCATAATCCT
Statistics
Matches: 75, Mismatches: 16, Indels: 14
0.71 0.15 0.13
Matches are distributed among these distances:
6 12 0.16
7 46 0.61
8 12 0.16
9 5 0.07
ACGTcount: A:0.39, C:0.40, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:68272423 original size:36 final size:36
Alignment explanation
Indices: 68272345--68272446 Score: 102
Period size: 36 Copynumber: 2.8 Consensus size: 36
68272335 ACTAATTAAT
* * * *
68272345 CTAAACCCTAAACCTCTTAACCCCTATCCCATAAACA
1 CTAAACTCTAAACC-CTTAACCCCAAACCCTTAAACA
*
68272382 CTAAACTCTAAACCCTTAACCCCAAACCCTTACAC-
1 CTAAACTCTAAACCCTTAACCCCAAACCCTTAAACA
*
68272417 CTTAAACTCT-AACCC-TAACACCTAAACCCT
1 C-TAAACTCTAAACCCTTAAC-CCCAAACCCT
68272447 AAATCATAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
34 4 0.07
35 15 0.26
36 25 0.44
37 13 0.23
ACGTcount: A:0.37, C:0.41, G:0.00, T:0.22
Consensus pattern (36 bp):
CTAAACTCTAAACCCTTAACCCCAAACCCTTAAACA
Found at i:68272703 original size:40 final size:41
Alignment explanation
Indices: 68272508--68272742 Score: 312
Period size: 41 Copynumber: 5.8 Consensus size: 41
68272498 AACTCCTAAA
* ** **
68272508 GCCGCTAATGCTCTGGTCATTAGCGGCGTTTTTTCGTAAGC
1 GCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTACCAAAAGC
* * * **
68272549 GCCGCTAATGCTTTGGTCATTAGCGGCGTTTTTCCGTAAGC
1 GCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTACCAAAAGC
*
68272590 GCCGCTAATGCTCTGGTCTTTAGCGGCATTTTACCAAAAGC
1 GCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTACCAAAAGC
*
68272631 GCTGCTAATGCTCTGGTCTTTAGCGGCGTTTTACCAAAAGC
1 GCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTACCAAAAGC
* *
68272672 GCCGCTAATGCTC-AGTCTTTAGCGGCATTTTACCAAAAGC
1 GCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTACCAAAAGC
* *
68272712 GTCGCTAATGCTC-AGTCTTTAGCGGCGTTTT
1 GCCGCTAATGCTCTGGTCTTTAGCGGCGTTTT
68272743 TTACTAAAAC
Statistics
Matches: 179, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
40 54 0.30
41 125 0.70
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.32
Consensus pattern (41 bp):
GCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTACCAAAAGC
Found at i:68272765 original size:81 final size:81
Alignment explanation
Indices: 68272545--68272784 Score: 252
Period size: 81 Copynumber: 3.0 Consensus size: 81
68272535 GTTTTTTCGT
* * * * * ** ** *
68272545 AAGCGCCGCTAATGCTTTGGTCATTAGCGGCGTTTTTCCGTAAGCGCCGCTAATGCTCTGGTCTT
1 AAGCGCTGCTAATGCTCTAGTCTTTAGCGGCGTTTTACCAAAAGCAACGCTAATGCTC-AGTCTT
68272610 TAGCGGCATTTTACCAA
65 TAGCGGCATTTTACCAA
* **
68272627 AAGCGCTGCTAATGCTCTGGTCTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCAGTCTTT
1 AAGCGCTGCTAATGCTCTAGTCTTTAGCGGCGTTTTACCAAAAGCAACGCTAATGCTCAGTCTTT
68272692 AGCGGCATTTTACCAA
66 AGCGGCATTTTACCAA
* ** * *
68272708 AAGCG-TCGCTAATGCTC-AGTCTTTAGCGGCGTTTTTTACTAAAA-CAACGCTGTTGCTCTGTT
1 AAGCGCT-GCTAATGCTCTAGTCTTTAGCGGCG--TTTTACCAAAAGCAACGCTAATGCTCAGTC
*
68272770 TTTAGCGGCGTTTTA
63 TTTAGCGGCATTTTA
68272785 TAAAGCCCTA
Statistics
Matches: 139, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
80 14 0.10
81 63 0.45
82 62 0.45
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (81 bp):
AAGCGCTGCTAATGCTCTAGTCTTTAGCGGCGTTTTACCAAAAGCAACGCTAATGCTCAGTCTTT
AGCGGCATTTTACCAA
Found at i:68272949 original size:20 final size:21
Alignment explanation
Indices: 68272917--68272958 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
68272907 CTAAACCGAT
*
68272917 AACTTAGGAAAATTTTTGAAA
1 AACTTAGGAAAATTTTTCAAA
68272938 AACTTA-GAAAATTTTTCAAA
1 AACTTAGGAAAATTTTTCAAA
68272958 A
1 A
68272959 TACAGGGGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (21 bp):
AACTTAGGAAAATTTTTCAAA
Found at i:68277083 original size:13 final size:13
Alignment explanation
Indices: 68277065--68277092 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
68277055 GGTACCTTGG
68277065 AGAATTTCTATCA
1 AGAATTTCTATCA
68277078 AGAATTTCTATCA
1 AGAATTTCTATCA
68277091 AG
1 AG
68277093 GATTCTAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (13 bp):
AGAATTTCTATCA
Found at i:68279798 original size:40 final size:40
Alignment explanation
Indices: 68279752--68279933 Score: 265
Period size: 40 Copynumber: 4.5 Consensus size: 40
68279742 TTATACTCTT
* * *
68279752 TGTTTGGTGTGTTTTGGTTGGATCAGCTCTTATAAGCTTC
1 TGTTTGGTGTGTTTCGGTTGGATCAGATCTTATGAGCTTC
* ** *
68279792 TATTTGGCATGTTTCGGTTCGATCAGATCTTATGAGCTTC
1 TGTTTGGTGTGTTTCGGTTGGATCAGATCTTATGAGCTTC
*
68279832 TGTTTGGTGTGTTTCGGTTGGATCAAATCTTATGAGCTTC
1 TGTTTGGTGTGTTTCGGTTGGATCAGATCTTATGAGCTTC
* *
68279872 TGTTTGGTGTGTTTCAGTTGGATCAGCTCTTATGAGCTTC
1 TGTTTGGTGTGTTTCGGTTGGATCAGATCTTATGAGCTTC
*
68279912 TGTATGGTGTGTTTCGGTTGGA
1 TGTTTGGTGTGTTTCGGTTGGA
68279934 CTAGATTTCC
Statistics
Matches: 125, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 125 1.00
ACGTcount: A:0.14, C:0.13, G:0.28, T:0.45
Consensus pattern (40 bp):
TGTTTGGTGTGTTTCGGTTGGATCAGATCTTATGAGCTTC
Found at i:68285362 original size:20 final size:20
Alignment explanation
Indices: 68285329--68285373 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
68285319 AGCACATGTA
* * *
68285329 TTCATAAAATTTTATAATTT
1 TTCATAAAAGTTTACAACTT
*
68285349 TTCATCAAAGTTTACAACTT
1 TTCATAAAAGTTTACAACTT
68285369 TTCAT
1 TTCAT
68285374 TTTAGTCCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAAGTTTACAACTT
Found at i:68290841 original size:69 final size:69
Alignment explanation
Indices: 68290730--68290870 Score: 264
Period size: 69 Copynumber: 2.0 Consensus size: 69
68290720 TCATAGAGCA
68290730 ATTGTGACAGCCCTGAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCG
1 ATTGTGACAGCCCTGAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCG
68290795 AAGT
66 AAGT
* *
68290799 ATTGTGACAGCCCTGAATTGACCCTAGTCGGGAAGTGGTTTCGGGATCGCTAAACCGAGTCACTG
1 ATTGTGACAGCCCTGAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCG
68290864 AAGT
66 AAGT
68290868 ATT
1 ATT
68290871 TGAATGTGAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (69 bp):
ATTGTGACAGCCCTGAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCG
AAGT
Found at i:68292446 original size:40 final size:40
Alignment explanation
Indices: 68292391--68292600 Score: 228
Period size: 40 Copynumber: 5.1 Consensus size: 40
68292381 CGGATGATAA
* * *
68292391 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
*
68292431 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* *
68292471 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-T-TA-CTATAT
* **
68292517 CCAGGCTCGGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
*
68292557 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
68292597 CCGG
1 CCGG
68292601 AAAAATCCCG
Statistics
Matches: 144, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
39 2 0.01
40 101 0.70
41 4 0.03
42 2 0.01
43 4 0.03
44 1 0.01
45 2 0.01
46 28 0.19
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:68292549 original size:86 final size:86
Alignment explanation
Indices: 68292440--68292598 Score: 300
Period size: 86 Copynumber: 1.8 Consensus size: 86
68292430 TCCGGGCTAA
68292440 GTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAG
1 GTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAG
68292505 CTATATCCATATCCAGGCTCG
66 CTATATCCATATCCAGGCTCG
* *
68292526 GTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTAG
1 GTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAG
68292591 CTATATCC
66 CTATATCC
68292599 GGAAAAATCC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 71 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (86 bp):
GTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAG
CTATATCCATATCCAGGCTCG
Found at i:68300410 original size:40 final size:40
Alignment explanation
Indices: 68300355--68300558 Score: 270
Period size: 40 Copynumber: 5.1 Consensus size: 40
68300345 CGGATGATAA
* * * *
68300355 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAATGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
*
68300395 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
68300435 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* **
68300475 CCAGGCTCGGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
*
68300515 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
68300555 CCGG
1 CCGG
68300559 AAAAATCCCG
Statistics
Matches: 147, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
39 2 0.01
40 143 0.97
41 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:68306555 original size:20 final size:18
Alignment explanation
Indices: 68306521--68306567 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 18
68306511 TTCCTCAAGC
68306521 AAACGAAAAATAAAATAA
1 AAACGAAAAATAAAATAA
*
68306539 AAACGAAGAAGATAAAATTA
1 AAACGAA-AA-ATAAAATAA
*
68306559 AAACTAAAA
1 AAACGAAAA
68306568 GAAAACACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 7 0.28
19 4 0.16
20 14 0.56
ACGTcount: A:0.72, C:0.06, G:0.09, T:0.13
Consensus pattern (18 bp):
AAACGAAAAATAAAATAA
Found at i:68311239 original size:46 final size:48
Alignment explanation
Indices: 68311126--68311250 Score: 146
Period size: 49 Copynumber: 2.6 Consensus size: 48
68311116 ACATCAAAGT
* * * * *
68311126 CGATGCTATGTCCCGGATAGGTCTTACACTGACTTTCATATATCGAGGC
1 CGATGC-ATGTCCCAGACATGTCTTACACTGACTCTCATAAATCGAGGC
* * *
68311175 CGATGCCGTGTCCCAGACATGTCTTACACTGGCTCTCA-AAAT-GTGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTGACTCTCATAAATCGAGGC
68311222 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
68311251 AGCACACATA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
46 23 0.35
47 9 0.14
48 3 0.05
49 30 0.45
50 1 0.02
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTCTCATAAATCGAGGC
Found at i:68313535 original size:11 final size:12
Alignment explanation
Indices: 68313519--68313555 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
68313509 AGGTTTCTAG
68313519 AAGAGTTTGAA-
1 AAGAGTTTGAAT
68313530 AAGAGTTTGAAT
1 AAGAGTTTGAAT
68313542 AAG-GTTTGAAT
1 AAGAGTTTGAAT
68313553 AAG
1 AAG
68313556 TTGTTGCTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 22 0.88
12 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.30
Consensus pattern (12 bp):
AAGAGTTTGAAT
Found at i:68315058 original size:27 final size:27
Alignment explanation
Indices: 68315009--68315067 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
68314999 CCCTATTTGA
* *
68315009 AAAATTACCCAAATAACATTGTAGTGT
1 AAAATTACCCAAATAACACTGTAGGGT
* * *
68315036 AAAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCCAAATAACACTGTAGGGT
68315063 AAAAT
1 AAAAT
68315068 GACTGTTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.25
Consensus pattern (27 bp):
AAAATTACCCAAATAACACTGTAGGGT
Found at i:68315449 original size:22 final size:22
Alignment explanation
Indices: 68315415--68315494 Score: 79
Period size: 22 Copynumber: 3.6 Consensus size: 22
68315405 GCCGCTTAAT
*
68315415 CTGATTATGGCTCTGTGCCAAC
1 CTGAATATGGCTCTGTGCCAAC
* * **
68315437 CTGAATATTGCTCTGTGCTATG
1 CTGAATATGGCTCTGTGCCAAC
* * *
68315459 CTGATTATGACTCTGTACCAAC
1 CTGAATATGGCTCTGTGCCAAC
*
68315481 CTAAATATGGCTCT
1 CTGAATATGGCTCT
68315495 ATGCTATGTT
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.35
Consensus pattern (22 bp):
CTGAATATGGCTCTGTGCCAAC
Found at i:68315465 original size:44 final size:44
Alignment explanation
Indices: 68315415--68315520 Score: 140
Period size: 44 Copynumber: 2.4 Consensus size: 44
68315405 GCCGCTTAAT
* * * *
68315415 CTGATTATGGCTCTGTGCCAACCTGAATATTGCTCTGTGCTATG
1 CTGATTATGGCTCTGTACCAACCTAAATATGGCTCTATGCTATG
*
68315459 CTGATTATGACTCTGTACCAACCTAAATATGGCTCTATGCTATG
1 CTGATTATGGCTCTGTACCAACCTAAATATGGCTCTATGCTATG
* * *
68315503 TTAATTATGGCTTTGTAC
1 CTGATTATGGCTCTGTAC
68315521 AAATCGTATT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38
Consensus pattern (44 bp):
CTGATTATGGCTCTGTACCAACCTAAATATGGCTCTATGCTATG
Found at i:68322097 original size:66 final size:67
Alignment explanation
Indices: 68321968--68322097 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
68321958 GGGATGTATC
*
68321968 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
68322033 AGGACA
62 AGGACA
* *
68322039 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
68322098 TTCACCTGTG
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:68337948 original size:53 final size:53
Alignment explanation
Indices: 68337877--68338032 Score: 217
Period size: 53 Copynumber: 3.0 Consensus size: 53
68337867 TCACATATCA
* * * *
68337877 TACCGATGCCATATCCCAGATATGGTCTTATACAGAATCACATTATCATATTG
1 TACCGATGCCATAGCCCAGCTATAGTCTTATACGGAATCACATTATCATATTG
* *
68337930 TACTGATGCCATAGCCCAGCTATAGTCTTATACGGAATCACATTATCACATTG
1 TACCGATGCCATAGCCCAGCTATAGTCTTATACGGAATCACATTATCATATTG
* *
68337983 TACCGATGCCATAGCCCAGCTATCGTATTATACGGAAGT-ACA-TATCATAT
1 TACCGATGCCATAGCCCAGCTATAGTCTTATACGGAA-TCACATTATCATAT
68338033 CTTTTTCGTC
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
52 7 0.08
53 84 0.91
54 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (53 bp):
TACCGATGCCATAGCCCAGCTATAGTCTTATACGGAATCACATTATCATATTG
Found at i:68348640 original size:23 final size:24
Alignment explanation
Indices: 68348614--68348659 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
68348604 TTAAAGAGTA
68348614 AATTAGTCTTT-TGTTAAAAATGT
1 AATTAGTCTTTATGTTAAAAATGT
* *
68348637 AATTATTTTTTACTGTTAAAAAT
1 AATTAGTCTTTA-TGTTAAAAAT
68348660 TGGTATGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
25 10 0.53
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (24 bp):
AATTAGTCTTTATGTTAAAAATGT
Found at i:68350508 original size:14 final size:15
Alignment explanation
Indices: 68350468--68350508 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
68350458 TTTGTTTAAC
68350468 AAAAAATAAAAA-AT
1 AAAAAATAAAAAGAT
* *
68350482 AAAAAATAGAAAGGT
1 AAAAAATAAAAAGAT
68350497 AAAAAA-AAAAAG
1 AAAAAATAAAAAG
68350509 TTCAGGCCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 16 0.70
15 7 0.30
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (15 bp):
AAAAAATAAAAAGAT
Found at i:68351152 original size:17 final size:18
Alignment explanation
Indices: 68351127--68351160 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68351117 ATACAATTCC
68351127 CAAAATAATAG-AAATTA
1 CAAAATAATAGTAAATTA
*
68351144 CAAATTAATAGTAAATT
1 CAAAATAATAGTAAATT
68351161 TAAAATACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (18 bp):
CAAAATAATAGTAAATTA
Found at i:68351710 original size:96 final size:96
Alignment explanation
Indices: 68351540--68352042 Score: 469
Period size: 96 Copynumber: 5.3 Consensus size: 96
68351530 CACCACTTTA
* * ** * ** * * *
68351540 TGGATGAATCACTGATTGTTGCAGATGAACCACTAACAATAAAAATATTGGTGTATGAACTA-TC
1 TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* * *
68351604 TATTGGTGCAGATAAAAGCTGCTAGTACATTG
66 -ATCGATGCAGATAAAAGCTGCTAGTACGTTG
* *
68351636 TGGATGAACCACTGGTTATTGCAGATGAACTGCTAATGATAAGAATATTGGTGGATGAACCA-TC
1 TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* *
68351700 TATCGATGCAGATAAAAGCTGCTAATATGTTG
66 -ATCGATGCAGATAAAAGCTGCTAGTACGTTG
* * * * *
68351732 TGGATGAACCATTGATCATTGCAGATGAACTATTAATGCTAAGAATA-TGGTGGATGAACTATTC
1 TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* *
68351796 ATC-AGTGTAGATAAAAGCTGCTAGTATGTTG
66 ATCGA-TGCAGATAAAAGCTGCTAGTACGTTG
* * * * **
68351827 TGGATAAACCAATGGCCATTGCAGATAAACTACTAATGATAAGAATATTGGCAGATGAACCATTC
1 TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* * * **
68351892 CTCGGTGCAGATAAAAGATATTAGTACGTTG
66 ATCGATGCAGATAAAAGCTGCTAGTACGTTG
* * * * * * *
68351923 TGGATAAATCACTAGTCA-TGCAGATAAACTACTAACGATAAGAATATAGGTGGATAAACCATTC
1 TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* * * * ** *
68351987 GTCGGTACAGATAAAAGATATTAGTACGTTC
66 ATCGATGCAGATAAAAGCTGCTAGTACGTTG
* * *
68352018 TGGATAAATCACTAGTCA-TGCAGAT
1 TGGATGAACCACTGGTCATTGCAGAT
68352043 AAATTGCTGA
Statistics
Matches: 350, Mismatches: 53, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
94 1 0.00
95 174 0.50
96 175 0.50
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (96 bp):
TGGATGAACCACTGGTCATTGCAGATGAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
ATCGATGCAGATAAAAGCTGCTAGTACGTTG
Found at i:68351755 original size:45 final size:45
Alignment explanation
Indices: 68351686--68351855 Score: 130
Period size: 45 Copynumber: 3.7 Consensus size: 45
68351676 AAGAATATTG
68351686 GTGGATGAACCATCT-ATCGA-TGCAGATAAAAGCTGCTAATATGTT
1 GTGGATGAACCAT-TGATC-ATTGCAGATAAAAGCTGCTAATATGTT
* * * *
68351731 GTGGATGAACCATTGATCATTGCAGATGAACTATTA-ATGCTAAGAATATG
1 GTGGATGAACCATTGATCATTGCAGAT-AA--A--AGCTGCTAA-TATGTT
* * * * *
68351781 GTGGATGAACTATTCATCAGTGTAGATAAAAGCTGCTAGTATGTT
1 GTGGATGAACCATTGATCATTGCAGATAAAAGCTGCTAATATGTT
* * **
68351826 GTGGATAAACCAATGGCCATTGCAGATAAA
1 GTGGATGAACCATTGATCATTGCAGATAAA
68351856 CTACTAATGA
Statistics
Matches: 95, Mismatches: 21, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
44 2 0.02
45 49 0.52
46 7 0.07
47 1 0.01
48 1 0.01
49 8 0.08
50 27 0.28
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (45 bp):
GTGGATGAACCATTGATCATTGCAGATAAAAGCTGCTAATATGTT
Found at i:68351837 original size:95 final size:95
Alignment explanation
Indices: 68351540--68352045 Score: 450
Period size: 95 Copynumber: 5.3 Consensus size: 95
68351530 CACCACTTTA
* * ** * * ** * * *
68351540 TGGATGAATCACTGATTGTTGCAGATGAACCACTAACAATAAAAATATTGGTGTATGAACTA-TC
1 TGGATAAACCACTGATCATTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* *
68351604 TATTGGTGCAGATAAAAGCTGCTAGTACATTG
66 -A-TCGTGCAGATAAAAGCTGCTAGTACGTTG
* * * * *
68351636 TGGATGAACCACTGGTTATTGCAGATGAACTGCTAATGATAAGAATATTGGTGGATGAACCA-TC
1 TGGATAAACCACTGATCATTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* *
68351700 TATCGATGCAGATAAAAGCTGCTAATATGTTG
66 -ATCG-TGCAGATAAAAGCTGCTAGTACGTTG
* * * * * *
68351732 TGGATGAACCATTGATCATTGCAGATGAACTATTAATGCTAAGAATA-TGGTGGATGAACTATTC
1 TGGATAAACCACTGATCATTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* *
68351796 ATCAGTGTAGATAAAAGCTGCTAGTATGTTG
66 ATC-GTGCAGATAAAAGCTGCTAGTACGTTG
* ** **
68351827 TGGATAAACCAATGGCCATTGCAGATAAACTACTAATGATAAGAATATTGGCAGATGAACCATTC
1 TGGATAAACCACTGATCATTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
* * **
68351892 CTCGGTGCAGATAAAAGATATTAGTACGTTG
66 ATC-GTGCAGATAAAAGCTGCTAGTACGTTG
* * * *
68351923 TGGATAAATCACT-AGTCA-TGCAGATAAACTACTAACGATAAGAATATAGGTGGATAAACCATT
1 TGGATAAACCACTGA-TCATTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATT
* * * ** *
68351986 CGTCGGTACAGATAAAAGATATTAGTACGTTC
65 CATC-GTGCAGATAAAAGCTGCTAGTACGTTG
*
68352018 TGGATAAATCACT-AGTCA-TGCAGATAAA
1 TGGATAAACCACTGA-TCATTGCAGATAAA
68352046 TTGCTGACTA
Statistics
Matches: 353, Mismatches: 52, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
95 179 0.51
96 174 0.49
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.28
Consensus pattern (95 bp):
TGGATAAACCACTGATCATTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATTC
ATCGTGCAGATAAAAGCTGCTAGTACGTTG
Found at i:68352024 original size:191 final size:191
Alignment explanation
Indices: 68351612--68352025 Score: 474
Period size: 191 Copynumber: 2.2 Consensus size: 191
68351602 TCTATTGGTG
* * * ** * *
68351612 CAGATAAAAGCTGCTAGTACATTGTGGATGAACCACTGGTTATTGCAGATGAACTGCTAATGATA
1 CAGATAAAAGCTGCTAGTACGTTGTGGATAAACCAATGGCCATTGCAGATAAACTACTAATGATA
** * * * *
68351677 AGAATATTGGTGGATGAACCATCTATCGATGCAGATAAAAGCTGCTAATATGTTGTGGATGAACC
66 AGAATATTGGCAGATGAACCATCTATCGATGCAGATAAAAGATACTAATACGTTGTGGATAAACC
* * * * * * * *
68351742 ATTGATCATTGCAGATGAACTATTAATGCTAAGAATATGGTGGATGAACTATTCATCAGTG
131 ATAGATCATTGCAGATAAACTACTAACGATAAGAATATGGTGGATAAACCATTCATCAGTA
* *
68351803 TAGATAAAAGCTGCTAGTATGTTGTGGATAAACCAATGGCCATTGCAGATAAACTACTAATGATA
1 CAGATAAAAGCTGCTAGTACGTTGTGGATAAACCAATGGCCATTGCAGATAAACTACTAATGATA
* * * * *
68351868 AGAATATTGGCAGATGAACCAT-TCCTCGGTGCAGATAAAAGATATTAGTACGTTGTGGATAAAT
66 AGAATATTGGCAGATGAACCATCT-ATCGATGCAGATAAAAGATACTAATACGTTGTGGATAAAC
* *
68351932 CACTAG-TCA-TGCAGATAAACTACTAACGATAAGAATATAGGTGGATAAACCATTCGTCGGTA
130 CA-TAGATCATTGCAGATAAACTACTAACGATAAGAATAT-GGTGGATAAACCATTCATCAGTA
* ** *
68351994 CAGATAAAAGATATTAGTACGTTCTGGATAAA
1 CAGATAAAAGCTGCTAGTACGTTGTGGATAAA
68352026 TCACTAGTCA
Statistics
Matches: 184, Mismatches: 36, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
190 26 0.14
191 156 0.85
192 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (191 bp):
CAGATAAAAGCTGCTAGTACGTTGTGGATAAACCAATGGCCATTGCAGATAAACTACTAATGATA
AGAATATTGGCAGATGAACCATCTATCGATGCAGATAAAAGATACTAATACGTTGTGGATAAACC
ATAGATCATTGCAGATAAACTACTAACGATAAGAATATGGTGGATAAACCATTCATCAGTA
Found at i:68352045 original size:44 final size:44
Alignment explanation
Indices: 68351897--68352045 Score: 122
Period size: 50 Copynumber: 3.2 Consensus size: 44
68351887 CATTCCTCGG
68351897 TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
1 TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
* * * * * * *
68351941 TGCAGAT-AAA-CTACTAACGATAAGAATATAGGTGGATAAACCATTCGTCGG
1 TGCAGATAAAAGATA-TTA-G-TACG--T-T--GTGGATAAATCACTAGTC-A
* *
68351992 TACAGATAAAAGATATTAGTACGTTCTGGATAAATCACTAGTCA
1 TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
68352036 TGCAGATAAA
1 TGCAGATAAA
68352046 TTGCTGACTA
Statistics
Matches: 77, Mismatches: 17, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
42 2 0.03
43 5 0.06
44 17 0.22
45 17 0.22
47 2 0.03
48 2 0.03
50 18 0.23
51 7 0.09
52 5 0.06
53 2 0.03
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.27
Consensus pattern (44 bp):
TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
Found at i:68366379 original size:18 final size:18
Alignment explanation
Indices: 68366356--68366423 Score: 68
Period size: 18 Copynumber: 3.8 Consensus size: 18
68366346 AGAACGTGTC
*
68366356 ATTCATTTTCAAAACATT
1 ATTCATTTTCAAAACGTT
*
68366374 ATTCATTATCACAAA-GTT
1 ATTCATTTTCA-AAACGTT
*
68366392 ATAC-TCTTTCAAAACGTT
1 ATTCAT-TTTCAAAACGTT
*
68366410 ATTAATTTTCAAAA
1 ATTCATTTTCAAAA
68366424 TGTCACTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
17 4 0.10
18 32 0.80
19 4 0.10
ACGTcount: A:0.40, C:0.16, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTCATTTTCAAAACGTT
Found at i:68371676 original size:16 final size:16
Alignment explanation
Indices: 68371655--68371704 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 16
68371645 AACTTNAGTC
68371655 ATATAATAAATTATTA
1 ATATAATAAATTATTA
68371671 ATATAAT---TTATTA
1 ATATAATAAATTATTA
* *
68371684 TTTTAATAAATTATTTA
1 ATATAATAAATTA-TTA
68371701 ATAT
1 ATAT
68371705 TTAAATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 11 0.42
16 10 0.38
17 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:68371691 original size:29 final size:30
Alignment explanation
Indices: 68371658--68371722 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 30
68371648 TTNAGTCATA
*
68371658 TAATAAATTA-TTAATA-TAATTTATTATTT
1 TAATAAATTATTTAATATTAAATT-TTATTT
68371687 TAATAAATTATTTAATATTTAAATTTTATTT
1 TAATAAATTATTTAATA-TTAAATTTTATTT
68371718 TAATA
1 TAATA
68371723 GTAAATTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 10 0.31
30 6 0.19
31 11 0.34
32 5 0.16
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (30 bp):
TAATAAATTATTTAATATTAAATTTTATTT
Found at i:68372333 original size:15 final size:15
Alignment explanation
Indices: 68372294--68372331 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
68372284 CTAAAAAAGT
68372294 AAATTA-TTTTCTAG
1 AAATTATTTTTCTAG
68372308 AAATTATTTTTC-AG
1 AAATTATTTTTCTAG
68372322 AAA-TATTTTT
1 AAATTATTTTT
68372332 TTTTGTCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.30
14 11 0.48
15 5 0.22
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (15 bp):
AAATTATTTTTCTAG
Found at i:68377270 original size:20 final size:21
Alignment explanation
Indices: 68377245--68377294 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
68377235 ATAAAAGTTA
68377245 TAAAAATTA-TTAAATTTTAG
1 TAAAAATTATTTAAATTTTAG
* * *
68377265 TAAAAAATATTTAATTTTTAT
1 TAAAAATTATTTAAATTTTAG
68377286 TAAAAATTA
1 TAAAAATTA
68377295 GAAAAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TAAAAATTATTTAAATTTTAG
Found at i:68377345 original size:20 final size:20
Alignment explanation
Indices: 68377317--68377446 Score: 56
Period size: 20 Copynumber: 6.7 Consensus size: 20
68377307 AAAAATCATT
*
68377317 AATTTTAAAAATTGTAAAAA
1 AATTATAAAAATTGTAAAAA
* * *
68377337 AATTAT-AAAA-TATATAGA
1 AATTATAAAAATTGTAAAAA
* *
68377355 AA-TATAGAAAAATGT-ATAA
1 AATTATA-AAAATTGTAAAAA
* * ** *
68377374 AATTTTATAAAGTCATAAGAA
1 AATTATA-AAAATTGTAAAAA
* *
68377395 AATTATAAAAAATGTAAAGA
1 AATTATAAAAATTGTAAAAA
*
68377415 AA-TAT-AAAATTCGTAAAAG
1 AATTATAAAAATT-GTAAAAA
*
68377434 AATTATTAAAATT
1 AATTATAAAAATT
68377447 ATCATACCAA
Statistics
Matches: 77, Mismatches: 25, Indels: 15
0.66 0.21 0.13
Matches are distributed among these distances:
17 3 0.04
18 12 0.16
19 21 0.27
20 26 0.34
21 15 0.19
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.32
Consensus pattern (20 bp):
AATTATAAAAATTGTAAAAA
Found at i:68380037 original size:15 final size:15
Alignment explanation
Indices: 68380007--68380035 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
68379997 ACTATTAGTA
68380007 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
68380022 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
68380036 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Done.