Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 205 of 284
Found at i:68386975 original size:33 final size:32
Alignment explanation
Indices: 68386930--68387002 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 32
68386920 CTCAAAGGAT
*
68386930 TCAATTGGAAACTTATCTTTCTATCCATTATA
1 TCAATCGGAAACTTATCTTTCTATCCATTATA
68386962 TCAATCGGCAAACTTATCTTTCTATCCATTATA
1 TCAATCGG-AAACTTATCTTTCTATCCATTATA
68386995 TCAATCGG
1 TCAATCGG
68387003 TTTATTTGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
32 7 0.18
33 32 0.82
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (32 bp):
TCAATCGGAAACTTATCTTTCTATCCATTATA
Found at i:68391224 original size:23 final size:22
Alignment explanation
Indices: 68391168--68391229 Score: 58
Period size: 23 Copynumber: 2.9 Consensus size: 22
68391158 AATAATAACA
*
68391168 ATACTAATAT-TATATAAAGAT
1 ATACTCATATATATATAAAGAT
* *
68391189 ATACTTATTTATATATTAAAGAT
1 ATACTCATATATATA-TAAAGAT
68391212 ATA-TACATATATA-ATAAA
1 ATACT-CATATATATATAAA
68391230 CGAATAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 12 0.35
22 6 0.18
23 16 0.47
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (22 bp):
ATACTCATATATATATAAAGAT
Found at i:68392293 original size:68 final size:68
Alignment explanation
Indices: 68392184--68392326 Score: 268
Period size: 68 Copynumber: 2.1 Consensus size: 68
68392174 TTTGATGTCT
*
68392184 GATTTTTTGTCTTTTAGATTTACTGATTTTGGGTGTTCGAATCTCTGCCCTTTGATGTTAAGATT
1 GATTTTTTGTCTTTTAGATTCACTGATTTTGGGTGTTCGAATCTCTGCCCTTTGATGTTAAGATT
68392249 GTG
66 GTG
68392252 GATTTTTTGTCTTTTAGATTCACTGATTTTGGGTGTTCGAATCTCTGCCCTTTGATGTTAAGATT
1 GATTTTTTGTCTTTTAGATTCACTGATTTTGGGTGTTCGAATCTCTGCCCTTTGATGTTAAGATT
68392317 GTG
66 GTG
68392320 GTATTTT
1 G-ATTTT
68392327 GTATATCAAT
Statistics
Matches: 73, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
68 68 0.93
69 5 0.07
ACGTcount: A:0.16, C:0.12, G:0.22, T:0.50
Consensus pattern (68 bp):
GATTTTTTGTCTTTTAGATTCACTGATTTTGGGTGTTCGAATCTCTGCCCTTTGATGTTAAGATT
GTG
Found at i:68393417 original size:14 final size:14
Alignment explanation
Indices: 68393398--68393427 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
68393388 AGTATAAATT
68393398 AAACAGAATTTGAA
1 AAACAGAATTTGAA
68393412 AAACAGAATTTGAA
1 AAACAGAATTTGAA
68393426 AA
1 AA
68393428 TACCTCGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (14 bp):
AAACAGAATTTGAA
Found at i:68393623 original size:73 final size:71
Alignment explanation
Indices: 68393537--68393803 Score: 298
Period size: 73 Copynumber: 3.7 Consensus size: 71
68393527 GTGAACCAAT
68393537 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAA-ATAGAATTTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AACATA-AA-TTGAAAATACCTCAGCG
68393601 TGCCCCGAG
63 TGCCCCGAG
68393610 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAACATAAATTGAAAATACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TTGAAACATAAATTGAAAATACCTCAGCGT
*
68393675 GCCCTGAG
64 GCCCCGAG
** * **
68393683 GCTTGACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATT-AAAA-A---CAGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAA-CATAAATTGAAAATACCTCAG-CG
****
68393743 T--TAAAAG
63 TGCCCCGAG
68393750 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAACATAAATTGAAAA
68393804 CAGAATTTGA
Statistics
Matches: 173, Mismatches: 13, Indels: 21
0.84 0.06 0.10
Matches are distributed among these distances:
67 43 0.25
68 11 0.06
69 1 0.01
71 4 0.02
72 10 0.06
73 90 0.52
74 7 0.04
75 7 0.04
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (71 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAAATACCTCAGCGTGC
CCCGAG
Found at i:68393779 original size:140 final size:147
Alignment explanation
Indices: 68393499--68393906 Score: 393
Period size: 155 Copynumber: 2.7 Consensus size: 147
68393489 AATATAAATT
* * *
68393499 AAAACAAAAATTGAAAACT-CCTCAGCATGTGAACC-AATGCTCAACTCACCTCTCGCAATATGA
1 AAAACAGAAATTGAAAA-TACCTCAGCA-GTG-ACCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * ** *** ***
68393562 GTTGATTTTTGACAAATAGAATTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCG
63 GTTGATTTTTGAAAAATAAAAATTGAAAA-A-CAGAAATTG--AAAAGGCTCAACTCACCTCTCG
68393627 CAATATGAGTTGA-TTTT-C-TTG
124 CAATATGAGTTGATTTTTACATTG
* * **
68393648 -AAACATAAATTGAAAATACCTCAGC-GTGCCCTGAGGCTTGACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAATACCTCAGCAGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
68393711 GATTTTTGAAAAGTATAAATT-AAAAACAGAAATT-AAAAGGCTCAACTCACCTCTCGCAATATG
66 GATTTTTGAAAAATAAAAATTGAAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCGCAATATG
68393774 AGTTGATTTTTGAAAAACATAAATTG
131 AGTTGATTTTT-----AC----ATTG
* *
68393800 AAAACAGAATTTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCA-GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
68393865 TGATTTTTGAAAAATAAAAATTGGAAAAACAGAAATTGAAAA
65 TGATTTTTGAAAAATAAAAATT-GAAAAACAGAAATTGAAAA
68393907 TACCTCAGCG
Statistics
Matches: 213, Mismatches: 26, Indels: 31
0.79 0.10 0.11
Matches are distributed among these distances:
140 32 0.15
141 4 0.02
143 3 0.01
144 1 0.00
145 6 0.03
146 47 0.22
147 2 0.01
148 22 0.10
152 3 0.01
153 22 0.10
155 54 0.25
157 13 0.06
158 4 0.02
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (147 bp):
AAAACAGAAATTGAAAATACCTCAGCAGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAATAAAAATTGAAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTACATTG
Found at i:68393855 original size:88 final size:88
Alignment explanation
Indices: 68393748--68394054 Score: 415
Period size: 88 Copynumber: 3.5 Consensus size: 88
68393738 AGAAATTAAA
* *
68393748 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAACAGAATTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAACAGAAATTG
*
68393813 AAAATACCTCGGCATGTGA-CCTG
66 AAAATACCTCAGC-TGTGACCCTG
*
68393836 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTGGAAAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATT-G-AAAACAGAAAT
68393901 TGAAAATACCTCAGC-GT-ACCCTG
64 TGAAAATACCTCAGCTGTGACCCTG
* * ** *
68393924 AGGCTCAACTCACCTCTCGCAATATAAATTGATTTTTGAAAAATATAAACTACAAAACAAAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAA-TTGAAAACAGAAATT
* * *
68393989 GAAAATACCTCAGCGTGCGAGCC-A
65 GAAAATACCTCAGC-TGTGACCCTG
* *
68394013 AGGCTCAACTCACCTCTCGCAATATGAGTTGAGTTTGGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
68394055 GCAAAAAATA
Statistics
Matches: 195, Mismatches: 17, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
87 26 0.13
88 101 0.52
89 41 0.21
90 27 0.14
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.25
Consensus pattern (88 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAACAGAAATTG
AAAATACCTCAGCTGTGACCCTG
Found at i:68406337 original size:24 final size:22
Alignment explanation
Indices: 68406283--68406340 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 22
68406273 GAAAAATATT
*
68406283 AAAAT-ATAATATTAGAATAAA
1 AAAATAATAATATTACAATAAA
*
68406304 AATAACAATAATATTCACAATAAA
1 AA-AATAATAATATT-ACAATAAA
68406328 GAAAATAATAATA
1 -AAAATAATAATA
68406341 AAAAATAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 2 0.07
22 2 0.07
23 8 0.27
24 16 0.53
25 2 0.07
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (22 bp):
AAAATAATAATATTACAATAAA
Found at i:68406512 original size:3 final size:3
Alignment explanation
Indices: 68406499--68406631 Score: 57
Period size: 3 Copynumber: 43.0 Consensus size: 3
68406489 AAAAGCAAAT
* *
68406499 ATA AT- ATA ATA AT- ATCA A-A ATA A-A ATA ATTA AAA ATA ATA CT-
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA A-TA ATA ATA ATA ATA
68406541 ATA TATAA ATA TATA TATA CATA TATA ATA ATA AT- ATA CACTA ATA ATA
1 ATA -AT-A ATA -ATA -ATA -ATA -ATA ATA ATA ATA ATA -A-TA ATA ATA
* * *
68406590 ATA ATA GTA ATA AT- ATAA ATA GTA TTA GA-A ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA ATA ATA ATA ATA
68406632 TTTAATAAAG
Statistics
Matches: 102, Mismatches: 11, Indels: 34
0.69 0.07 0.23
Matches are distributed among these distances:
2 14 0.14
3 60 0.59
4 25 0.25
5 3 0.03
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:68406577 original size:19 final size:19
Alignment explanation
Indices: 68406532--68406595 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
68406522 AATAATTAAA
*
68406532 AATAATACTATATATA-AAT
1 AATAATA-TACATATATAAT
68406551 -ATATATATACATATATAAT
1 AATA-ATATACATATATAAT
68406570 AATAATATACACTA-ATAAT
1 AATAATATACA-TATATAAT
68406589 AATAATA
1 AATAATA
68406596 GTAATAATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
18 10 0.25
19 25 0.62
20 5 0.12
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
AATAATATACATATATAAT
Found at i:68406600 original size:9 final size:8
Alignment explanation
Indices: 68406499--68406607 Score: 68
Period size: 8 Copynumber: 13.1 Consensus size: 8
68406489 AAAAGCAAAT
68406499 ATAATATA
1 ATAATATA
68406507 ATAATATCA
1 ATAATAT-A
*
68406516 A-AATAAA
1 ATAATATA
68406523 ATAAT-TA
1 ATAATATA
68406530 A-AA-ATA
1 ATAATATA
*
68406536 ATACTATA
1 ATAATATA
68406544 TATAA-AT-
1 -ATAATATA
68406551 ATATATATA
1 ATA-ATATA
68406560 CATATATAATA
1 -ATA-AT-ATA
68406571 ATAATATA
1 ATAATATA
68406579 CACTAATAATA
1 -A-TAAT-ATA
68406590 ATAATAGTA
1 ATAATA-TA
68406599 ATAATATA
1 ATAATATA
68406607 A
1 A
68406608 ATAGTATTAG
Statistics
Matches: 82, Mismatches: 4, Indels: 30
0.71 0.03 0.26
Matches are distributed among these distances:
6 8 0.10
7 6 0.07
8 28 0.34
9 20 0.24
10 14 0.17
11 6 0.07
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.34
Consensus pattern (8 bp):
ATAATATA
Found at i:68407286 original size:12 final size:12
Alignment explanation
Indices: 68407238--68407288 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
68407228 TTCATTTTTT
68407238 TATTTTTTT-TA
1 TATTTTTTTATA
* *
68407249 CATTTTTATATA
1 TATTTTTTTATA
* *
68407261 TATGTATTTATA
1 TATTTTTTTATA
*
68407273 TATTTTTTTGTA
1 TATTTTTTTATA
68407285 TATT
1 TATT
68407289 CGTTTAAGAG
Statistics
Matches: 30, Mismatches: 9, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
11 7 0.23
12 23 0.77
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (12 bp):
TATTTTTTTATA
Found at i:68409444 original size:20 final size:21
Alignment explanation
Indices: 68409421--68409471 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
68409411 AAATGATAGG
*
68409421 TAAATAAATAAACG-AAAAAA
1 TAAATAAATAAAAGAAAAAAA
68409441 TAAATAAATAAAAGATAAAAAA
1 TAAATAAATAAAAGA-AAAAAA
68409463 TAAAATAAA
1 T-AAATAAA
68409472 AATGCTATGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 13 0.48
22 7 0.26
23 7 0.26
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (21 bp):
TAAATAAATAAAAGAAAAAAA
Found at i:68409463 original size:14 final size:15
Alignment explanation
Indices: 68409422--68409467 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
68409412 AATGATAGGT
*
68409422 AAATAAATAAACGAAA
1 AAATAAATAAA-TAAA
68409438 AAATAAATAAATAAA
1 AAATAAATAAATAAA
*
68409453 AGATAAA-AAATAAA
1 AAATAAATAAATAAA
68409467 A
1 A
68409468 TAAAAATGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 8 0.29
15 9 0.32
16 11 0.39
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.15
Consensus pattern (15 bp):
AAATAAATAAATAAA
Found at i:68409625 original size:17 final size:17
Alignment explanation
Indices: 68409586--68409624 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
68409576 AATATGAATA
68409586 ATAAAATAATAATAATG
1 ATAAAATAATAATAATG
68409603 ATAAAATAA-AA-AATG
1 ATAAAATAATAATAATG
68409618 CATAAAA
1 -ATAAAA
68409625 AGAGGAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.19
16 8 0.38
17 9 0.43
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (17 bp):
ATAAAATAATAATAATG
Found at i:68410562 original size:47 final size:47
Alignment explanation
Indices: 68410486--68410804 Score: 548
Period size: 47 Copynumber: 6.7 Consensus size: 47
68410476 CCTTCGGGAC
* * * * * * *
68410486 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
68410533 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
68410580 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
68410627 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
68410674 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
68410721 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
68410768 TATCACATATATATACACTTTCACATTCATCACATCG
1 TATCAC--ATATATACACTTTCACATTCATCACATCG
68410805 AATCCTAAAT
Statistics
Matches: 261, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 232 0.89
49 29 0.11
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:68414427 original size:23 final size:24
Alignment explanation
Indices: 68414396--68414442 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
68414386 AATATTAAGG
* *
68414396 AGTACTTTTTTATATAATTTTATA
1 AGTACTTTTTAAAATAATTTTATA
*
68414420 AGTA-TTTTTAAAATATTTTTATA
1 AGTACTTTTTAAAATAATTTTATA
68414443 TAATTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (24 bp):
AGTACTTTTTAAAATAATTTTATA
Found at i:68419462 original size:25 final size:25
Alignment explanation
Indices: 68419410--68419462 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
68419400 TACTAAATTA
* **
68419410 TTTTATATGTCATCTATTTTAAGTT
1 TTTTATATATCATCTATTTTAAACT
* *
68419435 TTTTATATATTATTTATTTTAAACT
1 TTTTATATATCATCTATTTTAAACT
68419460 TTT
1 TTT
68419463 ACACATGTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (25 bp):
TTTTATATATCATCTATTTTAAACT
Found at i:68419531 original size:50 final size:45
Alignment explanation
Indices: 68419477--68419615 Score: 102
Period size: 49 Copynumber: 2.9 Consensus size: 45
68419467 ATGTTATCTA
68419477 TTTTATATTTTATTTAGTAAACGGTTTTATATGTTATTTATTTTAAAACT
1 TTTTATATTTTATTTAG-AAACGG-TTT-TA--TTATTTATTTTAAAACT
* * **
68419527 TTTTACATTGTATATTT-GAAACTGTTTTATTATTTATTTTAAGCCTT
1 TTTTATATT-T-TATTTAGAAACGGTTTTATTATTTATTTTAAAAC-T
**
68419574 TTATATATATTATTTATTTA-AAACTATTTTATTATTTATTTT
1 TT-T-TATA-T-TTTATTTAGAAACGGTTTTATTATTTATTTT
68419616 GAATCGTTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
46 14 0.19
47 3 0.04
48 3 0.04
49 32 0.43
50 15 0.20
51 3 0.04
52 5 0.07
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (45 bp):
TTTTATATTTTATTTAGAAACGGTTTTATTATTTATTTTAAAACT
Found at i:68419606 original size:22 final size:22
Alignment explanation
Indices: 68419510--68419614 Score: 68
Period size: 22 Copynumber: 4.5 Consensus size: 22
68419500 GTTTTATATG
68419510 TTATTTATTTTAAAACT-TTTTACA
1 TTATTTA-TTTAAAACTATTTT--A
* * * *
68419534 TTGTATATTTGAAACTGTTTTA
1 TTATTTATTTAAAACTATTTTA
** *
68419556 TTATTTATTTTAAGCCTTTTATATATA
1 TTATTTA-TTTAAAAC---TAT-TTTA
68419583 TTATTTATTTAAAACTATTTTA
1 TTATTTATTTAAAACTATTTTA
68419605 TTATTTATTT
1 TTATTTATTT
68419615 TGAATCGTTT
Statistics
Matches: 62, Mismatches: 13, Indels: 14
0.70 0.15 0.16
Matches are distributed among these distances:
22 19 0.31
23 16 0.26
24 9 0.15
26 8 0.13
27 10 0.16
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (22 bp):
TTATTTATTTAAAACTATTTTA
Found at i:68419643 original size:49 final size:49
Alignment explanation
Indices: 68419539--68419645 Score: 128
Period size: 49 Copynumber: 2.2 Consensus size: 49
68419529 TTACATTGTA
* * * *
68419539 TATTTGAAACTGTTTTATTATTTATTTTAAGCCTTTTATATATATTATT
1 TATTTAAAACTATTTTATTATTTATTTTAAGCCGTTTATATAGATTATT
* *
68419588 TATTTAAAACTATTTTATTATTTATTTTGAA-TCGTTT-TATAGGTTATT
1 TATTTAAAACTATTTTATTATTTATTTT-AAGCCGTTTATATAGATTATT
68419636 TATTTTAAAA
1 TA-TTTAAAA
68419646 TGTTATTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
48 11 0.22
49 37 0.74
50 2 0.04
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.58
Consensus pattern (49 bp):
TATTTAAAACTATTTTATTATTTATTTTAAGCCGTTTATATAGATTATT
Found at i:68419652 original size:17 final size:17
Alignment explanation
Indices: 68419630--68419666 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
68419620 CGTTTTATAG
68419630 GTTATTTATTTTAAAAT
1 GTTATTTATTTTAAAAT
*
68419647 GTTATTTATTTTAAATT
1 GTTATTTATTTTAAAAT
68419664 GTT
1 GTT
68419667 TTATATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (17 bp):
GTTATTTATTTTAAAAT
Found at i:68422775 original size:3 final size:3
Alignment explanation
Indices: 68422767--68422801 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
68422757 AAACAAAACA
68422767 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
68422802 CAACAACAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:68423716 original size:25 final size:25
Alignment explanation
Indices: 68423684--68423734 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
68423674 GACGTCATTT
68423684 CATCGTGGCCCTAAATGCCCCAAAA
1 CATCGTGGCCCTAAATGCCCCAAAA
68423709 CATCGTGGCCCTAAATGCCCCAAAA
1 CATCGTGGCCCTAAATGCCCCAAAA
68423734 C
1 C
68423735 GGTATTGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.37, G:0.16, T:0.16
Consensus pattern (25 bp):
CATCGTGGCCCTAAATGCCCCAAAA
Found at i:68431445 original size:68 final size:68
Alignment explanation
Indices: 68431335--68431463 Score: 240
Period size: 68 Copynumber: 1.9 Consensus size: 68
68431325 GACTACGAAA
*
68431335 GAGATCCTTGTAATTTTTAGAACTAATTCAGAGTAATGTTCAAAACACACTTATTACTCTATGCT
1 GAGATCCTTGTAATTTTTAGAACTAATTCAGAATAATGTTCAAAACACACTTATTACTCTATGCT
68431400 TGG
66 TGG
*
68431403 GAGATCCTTGTAATTTTTAGAACTAATTCAGAATAATTTTCAAAACACACTTATTACTCTA
1 GAGATCCTTGTAATTTTTAGAACTAATTCAGAATAATGTTCAAAACACACTTATTACTCTA
68431464 AGCCTGTGAG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 59 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (68 bp):
GAGATCCTTGTAATTTTTAGAACTAATTCAGAATAATGTTCAAAACACACTTATTACTCTATGCT
TGG
Found at i:68438614 original size:44 final size:44
Alignment explanation
Indices: 68438551--68438690 Score: 174
Period size: 44 Copynumber: 3.2 Consensus size: 44
68438541 CACCATAGAG
* *
68438551 AATCTTATCTCCCTGAAGTTCCAGTGGAGCAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATTAAAGCTACA
* * ** *
68438595 AATCTTATCTTCCTAAAGTTACAGTAAAGCAAATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATTAAAGCTACA
* * *
68438639 AATCTCATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAA-CGACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATT-AAAGCTACA
68438683 AATCTTAT
1 AATCTTAT
68438691 ACCTCTAAAG
Statistics
Matches: 79, Mismatches: 16, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
44 77 0.97
45 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATTAAAGCTACA
Found at i:68442111 original size:17 final size:18
Alignment explanation
Indices: 68442089--68442123 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
68442079 GATATGATAC
*
68442089 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
68442106 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
68442124 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:68442469 original size:35 final size:37
Alignment explanation
Indices: 68442406--68442484 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
68442396 ATTATAAAAT
68442406 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
68442442 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
68442477 CATATCAT
1 CATATCAT
68442485 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:68442482 original size:14 final size:15
Alignment explanation
Indices: 68442427--68442482 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
68442417 AGATTGCATA
68442427 TCATATCTAAGATTG
1 TCATATCTAAGATTG
68442442 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
68442460 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
68442477 -CATATC
1 TCATATC
68442483 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:68442492 original size:17 final size:19
Alignment explanation
Indices: 68442413--68442484 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
68442403 AATCATATCT
68442413 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
68442432 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
68442450 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
68442467 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
68442485 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:68442889 original size:45 final size:45
Alignment explanation
Indices: 68442834--68443107 Score: 277
Period size: 45 Copynumber: 6.1 Consensus size: 45
68442824 GGAAGTCGAT
* *
68442834 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
68442879 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
68442924 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGTCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
68442968 ATCTGTTATCTCCGATTTGCTCTCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * * * *
68443013 ATCTGTCATTTTTGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* * *
68443058 ATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
68443105 ATC
1 ATC
68443108 ATTTTGGATC
Statistics
Matches: 186, Mismatches: 34, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
43 6 0.03
44 45 0.24
45 106 0.57
46 1 0.01
47 17 0.09
48 5 0.03
49 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:68442955 original size:89 final size:90
Alignment explanation
Indices: 68442834--68443017 Score: 289
Period size: 89 Copynumber: 2.1 Consensus size: 90
68442824 GGAAGTCGAT
** *
68442834 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
68442899 TCCCCGTCTAATACAGAGACGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
* * *
68442924 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
* *
68442988 TCTCCGTCTAATACAGAGATGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
68443013 ATCTG
1 ATCTG
68443018 TCATTTTTGA
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 79 0.92
90 7 0.08
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
TCCCCGTCTAATACAGAGACGCCAA
Found at i:68443177 original size:78 final size:78
Alignment explanation
Indices: 68443047--68443298 Score: 407
Period size: 78 Copynumber: 3.2 Consensus size: 78
68443037 ATGTAAACAC
* *
68443047 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATTT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATAT
68443112 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
68443125 GTGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATA
*
68443189 TTGGATCTCCTTCA
65 TTGGATCTGCTTCA
* *
68443203 ATGAAGGTCAGATCTGCTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATAT
68443268 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
68443281 ATGAAGGTCGGATCTGCT
1 ATGAAGGTCAGATCTGCT
68443299 TCAATGAAGG
Statistics
Matches: 160, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 2 0.01
78 156 0.98
79 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATAT
TGGATCTGCTTCA
Found at i:68443295 original size:21 final size:21
Alignment explanation
Indices: 68443269--68443319 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
68443259 AAATCATATT
68443269 GGATCTGCTTCAATGAAGGTC
1 GGATCTGCTTCAATGAAGGTC
68443290 GGATCTGCTTCAATGAAGGTC
1 GGATCTGCTTCAATGAAGGTC
*
68443311 AGATCTGCT
1 GGATCTGCT
68443320 ATGTCTTTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (21 bp):
GGATCTGCTTCAATGAAGGTC
Found at i:68443551 original size:386 final size:389
Alignment explanation
Indices: 68442958--68443684 Score: 1120
Period size: 386 Copynumber: 1.9 Consensus size: 389
68442948 GTCTAATACA
* * *
68442958 GAGATGTCAAATCTGTTATCTCCGATTTGCTCTCCGTCTAATACAGAGATGCCAAATCTGTCATT
1 GAGATGCCAAATCTGTTATCTCCGATTTGCTCTCCGACTAATACAGAGATGCCAAA--T-TCATC
* * ** * * *
68443023 TTTGATCTGCTTCGATGTAAACACATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTC
63 TTAGATCTGCTTCAACATAAACACATGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCCCGTC
* * *
68443088 TAATACAGAGATGCCAAATCATTTTGGATCTGCTTCAGTGAAGGTCCAATCTGTTATGTCTTCGA
128 TAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGA
*
68443153 TCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTCCTTCAATGAAGGTCAGATCT
193 TCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTCCTTCAATGAAGGTCAGATCT
* *
68443218 GCTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATATTGGATCTGCTTCAAT
258 GCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATATTGGATCTGCTTCAAT
*
68443283 GAAGGTCGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTTGAATA
323 GAAGGTCAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTTGAATA
68443348 TG
388 TG
* * * * *
68443350 GAGATGCCAAATCTGTT-TCTTCGATTTGTTCTCTGAC-AGTACAGAGATTCCAAA-TCATCTTA
1 GAGATGCCAAATCTGTTATCTCCGATTTGCTCTCCGACTAATACAGAGATGCCAAATTCATCTTA
* * *
68443412 GATCTGCTTCAACATAAACACGTGAAAGCCAAATCTGCTATGTCTTTGATCTGCTCCCCGTCTAA
66 GATCTGCTTCAACATAAACACATGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCCCGTCTAA
*
68443477 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTGCTGTGTCTTCGATC
131 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTGCTATGTCTTCGATC
* *
68443541 TGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGC
195 TGCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTCCTTCAATGAAGGTCAGATCTGC
* *
68443606 TGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTTCAATGA
260 TGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATATTGGATCTGCTTCAATGA
68443671 AGGTCAGATCTGCT
325 AGGTCAGATCTGCT
68443685 GTGTCTTCGA
Statistics
Matches: 304, Mismatches: 30, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
385 2 0.01
386 255 0.84
390 15 0.05
391 16 0.05
392 16 0.05
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (389 bp):
GAGATGCCAAATCTGTTATCTCCGATTTGCTCTCCGACTAATACAGAGATGCCAAATTCATCTTA
GATCTGCTTCAACATAAACACATGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCCCGTCTAA
TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGATCT
GCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTCCTTCAATGAAGGTCAGATCTGCT
GTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATATTGGATCTGCTTCAATGAA
GGTCAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTTGAATATG
Found at i:68443805 original size:78 final size:78
Alignment explanation
Indices: 68443444--68443779 Score: 627
Period size: 78 Copynumber: 4.3 Consensus size: 78
68443434 TGAAAGCCAA
* * * *
68443444 ATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTT
68443509 CAATGAAGGTCAG
66 CAATGAAGGTCAG
68443522 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTT
1 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTT
68443587 CAATGAAGGTCAG
66 CAATGAAGGTCAG
68443600 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTT
1 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTT
68443665 CAATGAAGGTCAG
66 CAATGAAGGTCAG
68443678 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTT
1 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTT
68443743 CAATGAAGGTCAG
66 CAATGAAGGTCAG
*
68443756 ATCTGCTATGTCTTCGATCTGCTC
1 ATCTGCTGTGTCTTCGATCTGCTC
68443780 TCTGTCGAAT
Statistics
Matches: 253, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 253 1.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (78 bp):
ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTT
CAATGAAGGTCAG
Found at i:68443868 original size:199 final size:202
Alignment explanation
Indices: 68443631--68444504 Score: 877
Period size: 220 Copynumber: 4.2 Consensus size: 202
68443621 CTCCCCGTCT
* * * * *
68443631 AATACAAAGATGTCAAATCATCTTGGATCTGCTTCA-ATGAAGGTCAGATCTGCTGTGTCTTCGA
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTTCACATGAAGGTCAAATCTGCTATGTCTTCGA
* * * *
68443695 TCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTTC-A-AT-GAAGGTCAGA
66 TCTGCTCCCTGTC-AACACAAAGATGCCAAATCATCTTGGATCTACTTCAACATCGAAGGTCAGA
*
68443757 TCTGCTATGTCTTCGATCTGCTCTCTGTCGAATATGAAGATGCCAAATCTGTTTCTTCGATTTGT
130 TCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTCTTCGATTTGT
68443822 TCTCTGAC
195 TCTCTGAC
* * * *
68443830 AGTACAGAGGTGCCAAATCATCTTAGATCTGCTTCA-ATGAAGGTCAGATCTGCTGTGTCTTCGA
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTTCACATGAAGGTCAAATCTGCTATGTCTTCGA
* * * *
68443894 TCTGCTCCCTATCTAATACAGAGATGCCAAATCATCTTGGATCTTCTTC-A-AT-GAAGGTCAGA
66 TCTGCTCCCTGTC-AACACAAAGATGCCAAATCATCTTGGATCTACTTCAACATCGAAGGTCAGA
*
68443956 TCTGCTATGTCTTCGATCTGCTCTCCGTCGAATAT-AGAGATGCCAAATCTGTTTCTTCTATTTG
130 TCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGA-AGATGCCAAATCTGTTTCTTCGATTTG
*
68444020 TTCTCTAAC
194 TTCTCTGAC
* * * * *
68444029 AGTACAGAGATGCCAAATCATCTTAGATCTTCTTCAGCGTAAACACGTGAAAGTCAAATTTGTTA
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTT---C----ACA--TGAAGGTCAAATCTGCTA
* * * *
68444094 TGTCTTCAATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATCTGAA
57 TGTCTTCGATCTGCTCCCTGTCAACACAAAGATGCCAAATCATCTTGGATCTAC-T---TC---A
* * * *
68444159 GACATCCGAAGGTTAGATCTGCTATGTCTTCGATTTGCTCTCCGTTGAATATGGAGATGCCAAAT
115 -ACAT-CGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAAT
*
68444224 CTGTTTCTTTGATTTGTTCTCTGAC
178 CTGTTTCTTCGATTTGTTCTCTGAC
** * *
68444249 AATACAGAGATGTTAAATCATCTCAGATCTGCTTCAGCATAAACACATGAAAGG-CAAATATGCT
1 AATACAGAGATGCCAAATCATCTTAGATCTGC-T-----T---CACATG-AAGGTCAAATCTGCT
* * *
68444313 ATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGA
56 ATGTCTTCGATCTGCTCCCTGTCAACACAAAGATGCCAAATCATCTTGGATCTACTTC-------
* * * *
68444378 AAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATTCCAAA
114 -AACAT-CGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAA
68444443 TCTGTTTCTTCGATTTGTTCTCTGAC
177 TCTGTTTCTTCGATTTGTTCTCTGAC
** * *
68444469 AATACAGAGATGTTAAATCATCTTGGATCCGCTTCA
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTTCA
68444505 GCGTAAACAC
Statistics
Matches: 583, Mismatches: 56, Indels: 60
0.83 0.08 0.09
Matches are distributed among these distances:
198 1 0.00
199 216 0.37
202 1 0.00
206 1 0.00
207 1 0.00
208 27 0.05
209 33 0.06
211 2 0.00
212 2 0.00
214 1 0.00
216 2 0.00
217 1 0.00
218 2 0.00
219 2 0.00
220 279 0.48
221 6 0.01
222 3 0.01
226 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (202 bp):
AATACAGAGATGCCAAATCATCTTAGATCTGCTTCACATGAAGGTCAAATCTGCTATGTCTTCGA
TCTGCTCCCTGTCAACACAAAGATGCCAAATCATCTTGGATCTACTTCAACATCGAAGGTCAGAT
CTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTCTTCGATTTGTT
CTCTGAC
Found at i:68443922 original size:78 final size:78
Alignment explanation
Indices: 68443832--68444004 Score: 267
Period size: 78 Copynumber: 2.2 Consensus size: 78
68443822 TCTCTGACAG
* *
68443832 TACAGAGGTGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCGATCT
1 TACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
*
68443897 GCTC-CCTATCTAA
66 GCTCTCC-ATCGAA
* *
68443910 TACAGAGATGCCAAATCATCTTGGATCTTCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
1 TACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
*
68443975 GCTCTCCGTCGAA
66 GCTCTCCATCGAA
*
68443988 TATAGAGATGCCAAATC
1 TACAGAGATGCCAAATC
68444005 TGTTTCTTCT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
78 85 0.98
79 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (78 bp):
TACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
GCTCTCCATCGAA
Found at i:68444335 original size:220 final size:220
Alignment explanation
Indices: 68443946--68444535 Score: 923
Period size: 220 Copynumber: 2.7 Consensus size: 220
68443936 CTTCTTCAAT
* *
68443946 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * ** *
68444011 TTCT-ATTTGTTCTCTAACAGTACAGAGATGCCAAATCATCTTAGATCTTCTTCAGCGTAAACAC
66 TT-TGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACAC
* * * *
68444075 GTGAAAGTCAAATTTGTTATGTCTTCAATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTT
130 ATGAAAGGCAAATATGCTATGTCTTCAATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTT
*
68444140 GGATCTACTTCGATCTGAAGACATCC
195 GGATCTACTTCGATCTGAAAACATCC
* *
68444166 GAAGGTTAGATCTGCTATGTCTTCGATTTGCTCTCCGTTGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* *
68444231 TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTCAGATCTGCTTCAGCATAAACACA
66 TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACA
*
68444296 TGAAAGGCAAATATGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
131 TGAAAGGCAAATATGCTATGTCTTCAATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
*
68444361 GATCTACTTCGATGTGAAAACATCC
196 GATCTACTTCGATCTGAAAACATCC
* *
68444386 GAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATTCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * * *
68444451 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCCGCTTCAGCGTAAACACC
66 TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACA
*
68444516 TG-AAGGTCAAATCTGCTATG
131 TGAAAGG-CAAATATGCTATG
68444536 CTTTAGCCTG
Statistics
Matches: 339, Mismatches: 29, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
219 5 0.01
220 334 0.99
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (220 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACA
TGAAAGGCAAATATGCTATGTCTTCAATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
GATCTACTTCGATCTGAAAACATCC
Found at i:68444603 original size:440 final size:416
Alignment explanation
Indices: 68443747--68444535 Score: 981
Period size: 440 Copynumber: 1.8 Consensus size: 416
68443737 CTGCTTCAAT
*
68443747 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCTGTCGAATATGAAGATGCCAAATCTGTTTC
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTC
* * * *
68443812 TTCGATTTGTTCTCTGACAGTACAGAGGTGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAG
66 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTCAGATCTGCTTCAATGAAGGTCAA
* * *
68443877 ATCTGCTGTGTCTTCGATCTGCTCCCTATCTAATACAGAGATGCCAAATCATCTTGGATCTTCTT
131 ATATGCTATGTCTTCGATCTGCTCCCTATCTAACACAGAGATGCCAAATCATCTTGGATCTTCTT
* *
68443942 CAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTG
196 AAATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATAGAGATGCCAAATCTG
* * **
68444007 TTTCTTCTATTTGTTCTCTAACAGTACAGAGATGCCAAATCATCTTAGATCTTCTTCAGCGTAAA
261 TTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCCGCTTCAGCGTAAA
* * * * *
68444072 CACGTGAAAGTCAAATTTGTTATGTCTTCAATCTGCTCCTTGTCAACGCAAGGATGCCAAATCAT
326 CACCTGAAAGTCAAATCTGCTATGTCTTCAACCTGCTCCTTGTCAACGCAAGGACGCCAAATCAT
68444137 CTTGGATCTACTTCGATCTGAAGACATCC
391 CTTGGATCTACTTCGA--T-AAGACATCC
* * * *
68444166 GAAGGTTAGATCTGCTATGTCTTCGATTTGCTCTCCGTTGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTC
* **
68444231 TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTCAGATCTGCTTCAGCATAAACACA
66 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTCAGATCTGC-T-----T---CA-A
* * *
68444296 TGAAAGG-CAAATATGCTATGTCTTCGATCTGCTCCTTGTC-AACGCA-AGGATGCCAAATCATC
121 TG-AAGGTCAAATATGCTATGTCTTCGATCTGCTCCCTATCTAACACAGA-GATGCCAAATCATC
*
68444358 TTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCG
184 TTGGA--T-CTTC--T-T---AA-AT--GAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCG
* * * **
68444423 TCGAATATGGAGATTCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATC
237 TCGAATATAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATC
* *
68444488 ATCTTGGATCCGCTTCAGCGTAAACACCTGAAGGTCAAATCTGCTATG
302 ATCTTAGATCCGCTTCAGCGTAAACACCTGAAAGTCAAATCTGCTATG
68444536 CTTTAGCCTG
Statistics
Matches: 311, Mismatches: 35, Indels: 27
0.83 0.09 0.07
Matches are distributed among these distances:
419 104 0.33
420 1 0.00
425 1 0.00
427 1 0.00
428 25 0.08
429 31 0.10
430 5 0.02
431 4 0.01
433 1 0.00
434 1 0.00
437 1 0.00
438 2 0.01
440 134 0.43
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (416 bp):
GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTC
TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTCAGATCTGCTTCAATGAAGGTCAA
ATATGCTATGTCTTCGATCTGCTCCCTATCTAACACAGAGATGCCAAATCATCTTGGATCTTCTT
AAATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATAGAGATGCCAAATCTG
TTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCCGCTTCAGCGTAAA
CACCTGAAAGTCAAATCTGCTATGTCTTCAACCTGCTCCTTGTCAACGCAAGGACGCCAAATCAT
CTTGGATCTACTTCGATAAGACATCC
Found at i:68448146 original size:901 final size:901
Alignment explanation
Indices: 68446649--68448451 Score: 3498
Period size: 901 Copynumber: 2.0 Consensus size: 901
68446639 GACGTTCGGT
68446649 AAGCTAAGAGTGCAAATGGTAACTTTTCATGCCAGTCTCTGTAGGTTTCAGTCATTTTCCCCACT
1 AAGCTAAGAGTGCAAATGGTAACTTTTCATGCCAGTCTCTGTAGGTTTCAGTCATTTTCCCCACT
68446714 ATTTTCTTGATATTTTTGTTAGCAGCTTCCACTGCCCCATTCATCTTTGGGCGATACGACGAAGA
66 ATTTTCTTGATATTTTTGTTAGCAGCTTCCACTGCCCCATTCATCTTTGGGCGATACGACGAAGA
68446779 GTTATGATGCTTAATCCTGAACTGACTGCAAACTTCTACTATCGTTTTGTTGTTCAAGTTCAGTG
131 GTTATGATGCTTAATCCTGAACTGACTGCAAACTTCTACTATCGTTTTGTTGTTCAAGTTCAGTG
68446844 CATTGTCTGATATGATCCTTTCAGGCATCCCATACCGACAAATAATCTCTTTCTTCAAGAAACGA
196 CATTGTCTGATATGATCCTTTCAGGCATCCCATACCGACAAATAATCTCTTTCTTCAAGAAACGA
* *
68446909 CTTACAGCCGACTTAGTAACATTCGCTTAAGAAGCAGTCTCTACCCACTTCGTGAAGTAATCAAT
261 CTTACAGCCGACTTAGTAACATTCGCATAAGAAGCAGCCTCTACCCACTTCGTGAAGTAATCAAT
* *
68446974 GACCATAAAAATAAAGCGATGCCCATTTGAAGCTTTTGGTGATATTGGCCTAATGACATCCATGC
326 GACCACAAAAATAAAGCGATGCCCATTTGAAGCTTTTGGTGATATTGGCCCAATGACATCCATGC
*
68447039 CCCACATAGAAAAGGGCCATGGAGAAGTCATAACGTGTAGAGGTGAAGGTGGTACATGAATCTTG
391 CCCACATAGAAAAAGGCCATGGAGAAGTCATAACGTGTAGAGGTGAAGGTGGTACATGAATCTTG
68447104 TCTCCATAAATCTGACATTTATGGCATTTTTTGGCGTAGTTGATACAATCCCCTTCCAAAGTAGA
456 TCTCCATAAATCTGACATTTATGGCATTTTTTGGCGTAGTTGATACAATCCCCTTCCAAAGTAGA
*
68447169 CCAATAATATCCAAACCTCATGATTTGTCTAGCCATCGTGAAATCATTAGCGTGCGCCCCACAAA
521 CCAATAATATCCAAACCTCATGATTTGTCTAGCCATCGTGAAACCATTAGCGTGCGCCCCACAAA
* * *
68447234 CACCTTCGTGAACTTCTTCCAAGATGAACTTGGCTTCTACGGCGTCAACACATCTCAACAGTACT
586 CACCCTCGTGAACTTCTTCCAAGATGAACTTAGCTTCCACGGCGTCAACACATCTCAACAGTACT
68447299 TGGTCCTTTCTTCTTTTGTACAAGATGTCCCCATCCAAAACGTAGTCGCAGGCTAATCTCCTTAA
651 TGGTCCTTTCTTCTTTTGTACAAGATGTCCCCATCCAAAACGTAGTCGCAGGCTAATCTCCTTAA
68447364 AGTTCGCTTATCATTTTCAGTTGCCTGTTCTGGGTATTTACGATCTCTCACATATCGCAATATAT
716 AGTTCGCTTATCATTTTCAGTTGCCTGTTCTGGGTATTTACGATCTCTCACATATCGCAATATAT
68447429 CCTGATACCAAGGGTTATCATCCTTTTCTTCTTCCTCAATGTTACAACAGTGAGCTGGAGCCTCG
781 CCTGATACCAAGGGTTATCATCCTTTTCTTCTTCCTCAATGTTACAACAGTGAGCTGGAGCCTCG
68447494 AAGATACTCATCTGAATGGGTCTCATCTCCTCCTCTTTATTCACTTTAATCATTGA
846 AAGATACTCATCTGAATGGGTCTCATCTCCTCCTCTTTATTCACTTTAATCATTGA
68447550 AAGCTAAGAGTGCAAATGGTAACTTTTCATGCCAGTCTCTGTAGGTTTCAGTCATTTTCCCCACT
1 AAGCTAAGAGTGCAAATGGTAACTTTTCATGCCAGTCTCTGTAGGTTTCAGTCATTTTCCCCACT
68447615 ATTTTCTTGATATTTTTGTTAGCAGCTTCCACTGCCCCATTCATCTTTGGGCGATACGACGAAGA
66 ATTTTCTTGATATTTTTGTTAGCAGCTTCCACTGCCCCATTCATCTTTGGGCGATACGACGAAGA
68447680 GTTATGATGCTTAATCCTGAACTGACTGCAAACTTCTACTATCGTTTTGTTGTTCAAGTTCAGTG
131 GTTATGATGCTTAATCCTGAACTGACTGCAAACTTCTACTATCGTTTTGTTGTTCAAGTTCAGTG
*
68447745 CATTGTCTGATATGATCCTTTCAGGCATCCCATACCGACAAATAATCTCTTTCTTCAAGAATCGA
196 CATTGTCTGATATGATCCTTTCAGGCATCCCATACCGACAAATAATCTCTTTCTTCAAGAAACGA
68447810 CTTACAGCCGACTTAGTAACATTCGCATAAGAAGCAGCCTCTACCCACTTCGTGAAGTAATCAAT
261 CTTACAGCCGACTTAGTAACATTCGCATAAGAAGCAGCCTCTACCCACTTCGTGAAGTAATCAAT
68447875 GACCACAAAAATAAAGCGATGCCCATTTGAAGCTTTTGGTGATATTGGCCCAATGACATCCATGC
326 GACCACAAAAATAAAGCGATGCCCATTTGAAGCTTTTGGTGATATTGGCCCAATGACATCCATGC
68447940 CCCACATAGAAAAAGGCCATGGAGAAGTCATAACGTGTAGAGGTGAAGGTGGTACATGAATCTTG
391 CCCACATAGAAAAAGGCCATGGAGAAGTCATAACGTGTAGAGGTGAAGGTGGTACATGAATCTTG
68448005 TCTCCATAAATCTGACATTTATGGCATTTTTTGGCGTAGTTGATACAATCCCCTTCCAAAGTAGA
456 TCTCCATAAATCTGACATTTATGGCATTTTTTGGCGTAGTTGATACAATCCCCTTCCAAAGTAGA
*
68448070 CCAATAATATCCAAACCTCATGATTTGTCTAGCCATCGTGAAACCATTAGCGTGCGTCCCACAAA
521 CCAATAATATCCAAACCTCATGATTTGTCTAGCCATCGTGAAACCATTAGCGTGCGCCCCACAAA
*
68448135 CACCCTCGTGAACTTCTTCCAAGATTAACTTAGCTTCCACGGCGTCAACACATCTCAACAGTACT
586 CACCCTCGTGAACTTCTTCCAAGATGAACTTAGCTTCCACGGCGTCAACACATCTCAACAGTACT
68448200 TGGTCCTTTCTTCTTTTGTACAAGATGTCCCCATCCAAAACGTAGTCGCAGGCTAATCTCCTTAA
651 TGGTCCTTTCTTCTTTTGTACAAGATGTCCCCATCCAAAACGTAGTCGCAGGCTAATCTCCTTAA
68448265 AGTTCGCTTATCATTTTCAGTTGCCTGTTCTGGGTATTTACGATCTCTCACATATCGCAATATAT
716 AGTTCGCTTATCATTTTCAGTTGCCTGTTCTGGGTATTTACGATCTCTCACATATCGCAATATAT
68448330 CCTGATACCAAGGGTTATCATCCTTTTCTTCTTCCTCAATGTTACAACAGTGAGCTGGAGCCTCG
781 CCTGATACCAAGGGTTATCATCCTTTTCTTCTTCCTCAATGTTACAACAGTGAGCTGGAGCCTCG
68448395 AAGATACTCATCTGAATGGGTCTCATCTCCTCCTCTTTATTCACTTTAATCATTGA
846 AAGATACTCATCTGAATGGGTCTCATCTCCTCCTCTTTATTCACTTTAATCATTGA
68448451 A
1 A
68448452 GCCAAGGTTG
Statistics
Matches: 890, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
901 890 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (901 bp):
AAGCTAAGAGTGCAAATGGTAACTTTTCATGCCAGTCTCTGTAGGTTTCAGTCATTTTCCCCACT
ATTTTCTTGATATTTTTGTTAGCAGCTTCCACTGCCCCATTCATCTTTGGGCGATACGACGAAGA
GTTATGATGCTTAATCCTGAACTGACTGCAAACTTCTACTATCGTTTTGTTGTTCAAGTTCAGTG
CATTGTCTGATATGATCCTTTCAGGCATCCCATACCGACAAATAATCTCTTTCTTCAAGAAACGA
CTTACAGCCGACTTAGTAACATTCGCATAAGAAGCAGCCTCTACCCACTTCGTGAAGTAATCAAT
GACCACAAAAATAAAGCGATGCCCATTTGAAGCTTTTGGTGATATTGGCCCAATGACATCCATGC
CCCACATAGAAAAAGGCCATGGAGAAGTCATAACGTGTAGAGGTGAAGGTGGTACATGAATCTTG
TCTCCATAAATCTGACATTTATGGCATTTTTTGGCGTAGTTGATACAATCCCCTTCCAAAGTAGA
CCAATAATATCCAAACCTCATGATTTGTCTAGCCATCGTGAAACCATTAGCGTGCGCCCCACAAA
CACCCTCGTGAACTTCTTCCAAGATGAACTTAGCTTCCACGGCGTCAACACATCTCAACAGTACT
TGGTCCTTTCTTCTTTTGTACAAGATGTCCCCATCCAAAACGTAGTCGCAGGCTAATCTCCTTAA
AGTTCGCTTATCATTTTCAGTTGCCTGTTCTGGGTATTTACGATCTCTCACATATCGCAATATAT
CCTGATACCAAGGGTTATCATCCTTTTCTTCTTCCTCAATGTTACAACAGTGAGCTGGAGCCTCG
AAGATACTCATCTGAATGGGTCTCATCTCCTCCTCTTTATTCACTTTAATCATTGA
Found at i:68449221 original size:891 final size:890
Alignment explanation
Indices: 68447953--68449733 Score: 3355
Period size: 891 Copynumber: 2.0 Consensus size: 890
68447943 ACATAGAAAA
68447953 AGGCCATGGAGAAGTCATAACGTGTAGAGGTGAAGGTGGTACATGAATCTTGTCTCCATAAATCT
1 AGGCCATGGAGAAGTCATAACGTGTAGAGGTGAAGGTGGTACATGAATCTTGTCTCCATAAATCT
68448018 GACATTTATGGCATTTTTTGGCGTAGTTGATACAATCCCCTTCCAAAGTAGACCAATAATATCCA
66 GACATTTATGGCATTTTTTGGCGTAGTTGATACAATCCCCTTCCAAAGTAGACCAATAATATCCA
*
68448083 AACCTCATGATTTGTCTAGCCATCGTGAAACCATTAGCGTGCGTCCCACAAACACCCTCGTGAAC
131 AACCTCATGATTTGTCTAGCCATCGTGAAACCATTAGCGTGCGCCCCACAAACACCCTCGTGAAC
*
68448148 TTCTTCCAAGATTAACTTAGCTTCCACGGCGTCAACACATCTCAACAGTACTTGGTCCTTTCTTC
196 TTCTTCCAAGATGAACTTAGCTTCCACGGCGTCAACACATCTCAACAGTACTTGGTCCTTTCTTC
* *
68448213 TTTTGTACAAGATGTCCCCATCCAAAACGTAGTCGCAGGCTAATCTCCTTAAAGTTCGCTTATCA
261 TTTTGTACAAGATGTCCCCATCCAAAACGTAGTCGCAAGCTAATCTCCTTAAAGTTCACTTATCA
*
68448278 TTTTCAGTTGCCTGTTCTGGGTATTTACGATCTCTCACATATCGCAATATATCCTGATACCAAGG
326 TTTTCAGTTGCCTGTTCTAGGTATTTACGATCTCTCACATATCGCAATATATCCTGATACCAAGG
*
68448343 GTTATCATCCTTTTCTTCTTCCTCAATGTTACAACAGTGAGCTGGAGCCTCGAAGATACTCATCT
391 GTTATCATCCTTTTCTTCTTCCTCAATATTACAACAGTGAGCTGGAGCCTCGAAGATACTCATCT
68448408 GAATGGGTCTCATCTCCTCCTCTTTATTCACTTTAATCATTGAAGCCAAGGTTGCTAGAGCATCT
456 GAATGGGTCTCATCTCCTCCTCTTTATTCACTTTAATCATTGAAGCCAAGGTTGCTAGAGCATCT
*
68448473 GCCATCTGGTTTTCGTCTCGTGGGATATAATTGAAAGTGATGTCATCGAACTCCTCAAGTAACCC
521 GCCATCTGGTTTTCGTCTCGTGAGATATAATTGAAAGTGATGTCATCGAACTCCTCAAGTAACCC
68448538 CAAAACTACATTTCGATAATTGATCAATTTAGGATCCCTCGTCTCCTATTCACCTTTAAGCTGGT
586 CAAAACTACATTTCGATAATTGATCAATTTAGGATCCCTCGTCTCCTATTCACCTTTAAGCTGGT
68448603 AAATTACCAACGCGGAGTCTCCATAAACTTCCAAGGTTCTTATTCTTCGCTCTATAGCCGCTCGG
651 AAATTACCAACGCGGAGTCTCCATAAACTTCCAAGGTTCTTATTCTTCGCTCTATAGCCGCTCGG
68448668 AGTCCCATGATGCACGCTTCATACTCGGCCATATTGTTTGTGCAATCAAAATCCAACTTGCACGT
716 AGTCCCATGATGCACGCTTCATACTCGGCCATATTGTTTGTGCAATCAAAATCCAACTTGCACGT
* * *
68448733 GAATGGATAATAGTCACCATTTGGGGATACCAAGACTTCCCCAATTCCATTTCCCACTGTATTGG
781 GAATGGATAATAATCACCATTTGGGGATACCAAGACTACCCCAATTCCATTTCCCACTGCATTGG
* *
68448798 ATGCCTCATCAAAGCTCAACTTCCAAGGATAATCTTCTGAAGCTG
846 ATGCCCCATCAAAGCTCAACTTCCAAGGATAATCCTCTGAAGCTG
*
68448843 AGGCCATGGAGAAGTCATAACGTGTAGAGGTGAATGTGGTACATGAATCTTGTCTCCATAAATCT
1 AGGCCATGGAGAAGTCATAACGTGTAGAGGTGAAGGTGGTACATGAATCTTGTCTCCATAAATCT
**
68448908 GACATTTATGGCATTTTTTTGGCGTAGTTGATACAATTTCCTTCCAAAGTAGACCAATAATATCC
66 GACATTTATGGCA-TTTTTTGGCGTAGTTGATACAATCCCCTTCCAAAGTAGACCAATAATATCC
* *
68448973 AAACCTCATGATTTGTCTAGCCATCGTGAAATCATTAGCGTGCGCCCCACAAACACCTTCGTGAA
130 AAACCTCATGATTTGTCTAGCCATCGTGAAACCATTAGCGTGCGCCCCACAAACACCCTCGTGAA
* *
68449038 CTTCTTCCAAGATGAACTTGGCTTCTACGGCGTCAACACATCTCAACAGTACTTGGTCCTTTCTT
195 CTTCTTCCAAGATGAACTTAGCTTCCACGGCGTCAACACATCTCAACAGTACTTGGTCCTTTCTT
68449103 CTTTTGTACAAGATGTCCCCATCCAAAACGTAGTCGCAAGCTAATCTCCTTAAAGTTCACTTATC
260 CTTTTGTACAAGATGTCCCCATCCAAAACGTAGTCGCAAGCTAATCTCCTTAAAGTTCACTTATC
68449168 ATTTTCAGTTGCCTGTTCTAGGTATTTACGATCTCTCACATATCGCAATATATCCTGATACCAAG
325 ATTTTCAGTTGCCTGTTCTAGGTATTTACGATCTCTCACATATCGCAATATATCCTGATACCAAG
*
68449233 GGTTATCATCCTTTTTTTCTTCCTCAATATTACAACAGTGAGCTGGAGCCTCGAAGATACTCATC
390 GGTTATCATCCTTTTCTTCTTCCTCAATATTACAACAGTGAGCTGGAGCCTCGAAGATACTCATC
68449298 TGAATGGGTCTCATCTCCTCCTCTTTATTCACTTTAATCATTGAAGCCAAGGTTGCTAGAGCATC
455 TGAATGGGTCTCATCTCCTCCTCTTTATTCACTTTAATCATTGAAGCCAAGGTTGCTAGAGCATC
68449363 TGCCATCTGGTTTTCGTCTCGTGAGATATAATTGAAAGTGATGTCATCGAACTCCTCAAGTAACC
520 TGCCATCTGGTTTTCGTCTCGTGAGATATAATTGAAAGTGATGTCATCGAACTCCTCAAGTAACC
68449428 CCAAAACTACATTTCGATAATTGATCAATTTAGGATCCCTCGTCTCCTATTCACCTTTAAGCTGG
585 CCAAAACTACATTTCGATAATTGATCAATTTAGGATCCCTCGTCTCCTATTCACCTTTAAGCTGG
*
68449493 TAAATTACCAACGTGGAGTCTCCATAAACTTCCAAGGTTCTTATTCTTCGCTCTATAGCCGCTCG
650 TAAATTACCAACGCGGAGTCTCCATAAACTTCCAAGGTTCTTATTCTTCGCTCTATAGCCGCTCG
68449558 GAGTCCCATGATGCACGCTTCATACTCGGCCATATTGTTTGTGCAATCAAAATCCAACTTGCACG
715 GAGTCCCATGATGCACGCTTCATACTCGGCCATATTGTTTGTGCAATCAAAATCCAACTTGCACG
68449623 TGAATGGATAATAATCACCATTTGGGGATACCAAGACTACCCCAATTCCATTTCCCACTGCATTG
780 TGAATGGATAATAATCACCATTTGGGGATACCAAGACTACCCCAATTCCATTTCCCACTGCATTG
*
68449688 GATGCCCCATCAAAGCTCAACTTCCAAGGATAATCCTCTGTAGCTG
845 GATGCCCCATCAAAGCTCAACTTCCAAGGATAATCCTCTGAAGCTG
68449734 CTACACACAT
Statistics
Matches: 868, Mismatches: 22, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
890 77 0.09
891 791 0.91
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (890 bp):
AGGCCATGGAGAAGTCATAACGTGTAGAGGTGAAGGTGGTACATGAATCTTGTCTCCATAAATCT
GACATTTATGGCATTTTTTGGCGTAGTTGATACAATCCCCTTCCAAAGTAGACCAATAATATCCA
AACCTCATGATTTGTCTAGCCATCGTGAAACCATTAGCGTGCGCCCCACAAACACCCTCGTGAAC
TTCTTCCAAGATGAACTTAGCTTCCACGGCGTCAACACATCTCAACAGTACTTGGTCCTTTCTTC
TTTTGTACAAGATGTCCCCATCCAAAACGTAGTCGCAAGCTAATCTCCTTAAAGTTCACTTATCA
TTTTCAGTTGCCTGTTCTAGGTATTTACGATCTCTCACATATCGCAATATATCCTGATACCAAGG
GTTATCATCCTTTTCTTCTTCCTCAATATTACAACAGTGAGCTGGAGCCTCGAAGATACTCATCT
GAATGGGTCTCATCTCCTCCTCTTTATTCACTTTAATCATTGAAGCCAAGGTTGCTAGAGCATCT
GCCATCTGGTTTTCGTCTCGTGAGATATAATTGAAAGTGATGTCATCGAACTCCTCAAGTAACCC
CAAAACTACATTTCGATAATTGATCAATTTAGGATCCCTCGTCTCCTATTCACCTTTAAGCTGGT
AAATTACCAACGCGGAGTCTCCATAAACTTCCAAGGTTCTTATTCTTCGCTCTATAGCCGCTCGG
AGTCCCATGATGCACGCTTCATACTCGGCCATATTGTTTGTGCAATCAAAATCCAACTTGCACGT
GAATGGATAATAATCACCATTTGGGGATACCAAGACTACCCCAATTCCATTTCCCACTGCATTGG
ATGCCCCATCAAAGCTCAACTTCCAAGGATAATCCTCTGAAGCTG
Found at i:68456627 original size:17 final size:17
Alignment explanation
Indices: 68456605--68456639 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
68456595 GATATGATAC
68456605 TAAAAT-TATTAAAAAAA
1 TAAAATATA-TAAAAAAA
68456622 TAAAATATATAAAAAAA
1 TAAAATATATAAAAAAA
68456639 T
1 T
68456640 TCTAGGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATATATAAAAAAA
Found at i:68456638 original size:18 final size:17
Alignment explanation
Indices: 68456605--68456638 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
68456595 GATATGATAC
*
68456605 TAAAATTATTAAAAAAA
1 TAAAATTATAAAAAAAA
68456622 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
68456639 TTCTAGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
TAAAATTATAAAAAAAA
Found at i:68456929 original size:22 final size:21
Alignment explanation
Indices: 68456904--68456951 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
68456894 TCCAAATTAA
*
68456904 ATCTCTAATATTACAAAATCAT
1 ATCTCTAAAATTAC-AAATCAT
* *
68456926 ATCTTCTAAAATTGCATATCAT
1 ATC-TCTAAAATTACAAATCAT
68456948 ATCT
1 ATCT
68456952 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.05
22 12 0.55
23 9 0.41
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.40
Consensus pattern (21 bp):
ATCTCTAAAATTACAAATCAT
Found at i:68456958 original size:19 final size:19
Alignment explanation
Indices: 68456930--68456966 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
68456920 AATCATATCT
68456930 TCTAAAATTGCATATCATA
1 TCTAAAATTGCATATCATA
*
68456949 TCTAAGATTGCATATCAT
1 TCTAAAATTGCATATCAT
68456967 TGAAGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (19 bp):
TCTAAAATTGCATATCATA
Found at i:68456974 original size:17 final size:19
Alignment explanation
Indices: 68456936--68456974 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
68456926 ATCTTCTAAA
*
68456936 ATTGCATATCATATCTAAG
1 ATTGCATATCATATCGAAG
68456955 ATTGCATATCAT-T-GAAG
1 ATTGCATATCATATCGAAG
68456972 ATT
1 ATT
68456975 ATATTCCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 1 0.05
19 12 0.63
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (19 bp):
ATTGCATATCATATCGAAG
Found at i:68457981 original size:27 final size:26
Alignment explanation
Indices: 68457947--68458050 Score: 74
Period size: 26 Copynumber: 3.9 Consensus size: 26
68457937 TTTTTTTAAA
68457947 TTTT-AAATATATATATTTGAAATTAT
1 TTTTAAAATATATATATTT-AAATTAT
* *
68457973 TTTTAAAAT-TTTAAATATTAAATATAT
1 TTTTAAAATATATATAT-TTAAAT-TAT
*
68458000 TTTTAATAATATAAAATATTTAAA-TA-
1 TTTTAA-AATAT-ATATATTTAAATTAT
*
68458026 TTTTAAAGATATGACAT-TTTAAATT
1 TTTTAAA-ATAT-ATATATTTAAATT
68458051 TATTATTAGT
Statistics
Matches: 63, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
25 7 0.11
26 27 0.43
27 17 0.27
28 3 0.05
29 6 0.10
30 3 0.05
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (26 bp):
TTTTAAAATATATATATTTAAATTAT
Found at i:68458003 original size:28 final size:29
Alignment explanation
Indices: 68457959--68458026 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
68457949 TTAAATATAT
* *
68457959 ATATTTGAAAT-TATTTTTAA-AATTTTAA
1 ATATTT-AAATATATTTTTAATAATATAAA
68457987 ATA-TTAAATATATTTTTAATAATATAAA
1 ATATTTAAATATATTTTTAATAATATAAA
68458015 ATATTTAAATAT
1 ATATTTAAATAT
68458027 TTTAAAGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 4 0.11
27 11 0.31
28 12 0.34
29 8 0.23
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (29 bp):
ATATTTAAATATATTTTTAATAATATAAA
Found at i:68458037 original size:19 final size:18
Alignment explanation
Indices: 68457959--68458037 Score: 56
Period size: 18 Copynumber: 4.2 Consensus size: 18
68457949 TTAAATATAT
68457959 ATATTTGAAATTATTTTTAAA
1 ATATTT-AAA-TA-TTTTAAA
68457980 AT-TTTAAATA--TTAAA
1 ATATTTAAATATTTTAAA
* * *
68457995 TATATTTTTAATAATATAAA
1 -ATA-TTTAAATATTTTAAA
68458015 ATATTTAAATATTTTAAA
1 ATATTTAAATATTTTAAA
68458033 GATAT
1 -ATAT
68458038 GACATTTTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
15 5 0.11
16 2 0.04
18 21 0.45
19 10 0.21
20 7 0.15
21 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
ATATTTAAATATTTTAAA
Found at i:68458074 original size:28 final size:27
Alignment explanation
Indices: 68458041--68458117 Score: 84
Period size: 30 Copynumber: 2.7 Consensus size: 27
68458031 AAGATATGAC
*
68458041 ATTTTAAATTTATTATT-AGTTTTATAAT
1 ATTTTAAATTTATT-TTAAATTTTA-AAT
68458069 ATTTTAAATGTATATTTTAAATTTTAAAT
1 ATTTTAAAT-T-TATTTTAAATTTTAAAT
*
68458098 ATTTTTAAATTTGTTTTAAA
1 A-TTTTAAATTTATTTTAAA
68458118 ATATTTTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
28 17 0.40
29 8 0.19
30 18 0.42
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (27 bp):
ATTTTAAATTTATTTTAAATTTTAAAT
Found at i:68458105 original size:10 final size:11
Alignment explanation
Indices: 68458089--68458157 Score: 61
Period size: 11 Copynumber: 6.3 Consensus size: 11
68458079 TATATTTTAA
68458089 ATTTTAAATAT
1 ATTTTAAATAT
*
68458100 -TTTTAAATTT
1 ATTTTAAATAT
*
68458110 GTTTTAAA-AT
1 ATTTTAAATAT
68458120 ATTTTAAATTAT
1 ATTTTAAA-TAT
* *
68458132 AATTTTTAATTT
1 -ATTTTAAATAT
*
68458144 ATTTAAAATAT
1 ATTTTAAATAT
68458155 ATT
1 ATT
68458158 ATTTTTAAAG
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
10 17 0.37
11 18 0.39
12 4 0.09
13 7 0.15
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (11 bp):
ATTTTAAATAT
Found at i:68458116 original size:21 final size:21
Alignment explanation
Indices: 68458090--68458129 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
68458080 ATATTTTAAA
68458090 TTTT-AAATATTTTTAAATTTG
1 TTTTAAAATA-TTTTAAATTTG
68458111 TTTTAAAATATTTTAAATT
1 TTTTAAAATATTTTAAATT
68458130 ATAATTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
TTTTAAAATATTTTAAATTTG
Found at i:68458146 original size:24 final size:25
Alignment explanation
Indices: 68458119--68458165 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68458109 TGTTTTAAAA
*
68458119 TATTTTAAAT-TATAATTTTTAATT
1 TATTTAAAATATATAATTTTTAATT
*
68458143 TATTTAAAATATATTATTTTTAA
1 TATTTAAAATATATAATTTTTAA
68458166 AGATATAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
TATTTAAAATATATAATTTTTAATT
Found at i:68458191 original size:134 final size:141
Alignment explanation
Indices: 68457940--68458211 Score: 323
Period size: 134 Copynumber: 2.0 Consensus size: 141
68457930 TTATATATTT
68457940 TTTTAAATTTTAAATATATATATTTGAAATTATTTTTAAAATTTTAAATATTAAATATATTTTTA
1 TTTTAAATTTTAAATATATATATTTGAAATTATTTTTAAAATTTTAAATATT-AATATATTTTTA
* * *
68458005 ATAATATAAAATATTTAAATATTTTAAAGATATGACATTTTAAATTTATTATTAGTTTTATAATA
65 ATAATATAAAATATTT-AATATTTTAAAGATATAACATCTCAAATTTATTATTAGTTTTATAATA
*
68458070 TTTTAAATGTATA
129 ATTTAAATGTATA
*
68458083 TTTTAAATTTT-AA-ATAT-T-TTT-AAATT-TGTTTTAAAATATTTTAA-ATT-ATA-ATTTTT
1 TTTTAAATTTTAAATATATATATTTGAAATTAT-TTTTAAAAT-TTTAAATATTAATATATTTTT
* * * * *
68458139 AATTTATTTAAAATATATT-AT-TTTTAAAGATATAACCTCTCAAATTTGTTATTTGTTTTATAA
64 AA-TAATATAAAATAT-TTAATATTTTAAAGATATAACATCTCAAATTTATTATTAGTTTTATAA
68458202 TAATTTAAAT
127 TAATTTAAAT
68458212 ATTTTTTTAA
Statistics
Matches: 115, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
134 45 0.39
135 10 0.09
136 14 0.12
137 3 0.03
138 17 0.15
139 8 0.07
140 1 0.01
141 4 0.03
142 2 0.02
143 11 0.10
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (141 bp):
TTTTAAATTTTAAATATATATATTTGAAATTATTTTTAAAATTTTAAATATTAATATATTTTTAA
TAATATAAAATATTTAATATTTTAAAGATATAACATCTCAAATTTATTATTAGTTTTATAATAAT
TTAAATGTATA
Found at i:68458230 original size:11 final size:12
Alignment explanation
Indices: 68458205--68458234 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
68458195 TTTATAATAA
68458205 TTTAAATATTTT
1 TTTAAATATTTT
68458217 TTTAAATA-TTT
1 TTTAAATATTTT
68458228 TTTAAAT
1 TTTAAAT
68458235 TTTAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTAAATATTTT
Found at i:68458247 original size:12 final size:13
Alignment explanation
Indices: 68458232--68458281 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 13
68458222 ATATTTTTTA
68458232 AATTTTAAATA-T
1 AATTTTAAATATT
68458244 AATTTTTATAAATTATT
1 AA--TTT-TAAA-TATT
68458261 AATTTTAAA-ATT
1 AATTTTAAATATT
68458273 AATTTTAAA
1 AATTTTAAA
68458282 GATATTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
12 14 0.42
14 7 0.21
15 7 0.21
16 2 0.06
17 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTTTAAATATT
Found at i:68458317 original size:21 final size:21
Alignment explanation
Indices: 68458217--68458327 Score: 57
Period size: 21 Copynumber: 5.0 Consensus size: 21
68458207 TAAATATTTT
68458217 TTTAAATATTTTTTAAATTTTAAA
1 TTTAAA-ATTTTTTAAA--TTAAA
*
68458241 --TATAATTTTTATAAATTATTAA
1 TTTAAAATTTTT-TAAATTA--AA
* *
68458263 TTTTAAAATTAATTTTAAA-GATA
1 -TTTAAAATT--TTTTAAATTAAA
*
68458286 TTCAAACATTTTTTAAATTAAA
1 TTTAAA-ATTTTTTAAATTAAA
**
68458308 TTTAAAATTTTAAAAATTAA
1 TTTAAAATTTTTTAAATTAA
68458328 TACTTTATAG
Statistics
Matches: 67, Mismatches: 10, Indels: 23
0.67 0.10 0.23
Matches are distributed among these distances:
20 3 0.04
21 25 0.37
22 21 0.31
23 4 0.06
25 7 0.10
26 4 0.06
27 3 0.04
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (21 bp):
TTTAAAATTTTTTAAATTAAA
Found at i:68459201 original size:17 final size:16
Alignment explanation
Indices: 68459179--68459248 Score: 68
Period size: 17 Copynumber: 4.0 Consensus size: 16
68459169 CAACATTTTC
68459179 TTTTAACATATTTAAAA
1 TTTTAA-ATATTTAAAA
68459196 TTTTAATATATTTAAAA
1 TTTTAA-ATATTTAAAA
* *
68459213 TTTTTTAAGTTTTTTAAAA
1 --TTTTAA-ATATTTAAAA
68459232 TTTTAAATATATTAAAA
1 TTTTAAATAT-TTAAAA
68459249 AATCTTTTTC
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
16 2 0.05
17 28 0.64
19 14 0.32
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (16 bp):
TTTTAAATATTTAAAA
Found at i:68459219 original size:36 final size:37
Alignment explanation
Indices: 68459179--68459249 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 37
68459169 CAACATTTTC
*
68459179 TTTTAACATATTTAAAATTTT-AATATATTTAAAATT
1 TTTTAACATATTTAAAATTTTAAATATATTAAAAATT
** *
68459215 TTTTAAGTTTTTTAAAATTTTAAATATATTAAAAA
1 TTTTAACATATTTAAAATTTTAAATATATTAAAAA
68459250 ATCTTTTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 18 0.60
37 12 0.40
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (37 bp):
TTTTAACATATTTAAAATTTTAAATATATTAAAAATT
Found at i:68459330 original size:19 final size:17
Alignment explanation
Indices: 68459299--68459414 Score: 58
Period size: 17 Copynumber: 6.6 Consensus size: 17
68459289 TTAAAATTTT
*
68459299 AATTTTTT-TTATACTTA
1 AATTTTTTAATATA-TTA
*
68459316 ACATTTTTTAATATATTT
1 A-ATTTTTTAATATATTA
68459334 AATTTTTTAAAAATATATTA
1 AATTTTTT---AATATATTA
* * * *
68459354 AATATATTAAAATTTTAA
1 AATTTTTTAATATATT-A
** *
68459372 AATTGGTT-ATA-CTTA
1 AATTTTTTAATATATTA
*
68459387 ACATTTTTTAATATATTT
1 A-ATTTTTTAATATATTA
68459405 AATTTTTTAA
1 AATTTTTTAA
68459415 GTTTTTTAAA
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
15 2 0.03
16 7 0.09
17 28 0.38
18 19 0.26
19 4 0.05
20 14 0.19
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (17 bp):
AATTTTTTAATATATTA
Found at i:68459338 original size:17 final size:17
Alignment explanation
Indices: 68459274--68459343 Score: 54
Period size: 17 Copynumber: 4.1 Consensus size: 17
68459264 TCCTATTAAA
* * *
68459274 AATATATTGAATATATT
1 AATATATTTAATTTTTT
*
68459291 AAAAT-TTTAATTTTTT
1 AATATATTTAATTTTTT
* *
68459307 -TTATACTTAACATTTTTT
1 AATATA-TTTA-ATTTTTT
68459325 AATATATTTAATTTTTT
1 AATATATTTAATTTTTT
68459342 AA
1 AA
68459344 AAATATATTA
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
15 2 0.05
16 8 0.20
17 16 0.40
18 10 0.25
19 4 0.10
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (17 bp):
AATATATTTAATTTTTT
Found at i:68459344 original size:71 final size:71
Alignment explanation
Indices: 68459269--68459414 Score: 247
Period size: 71 Copynumber: 2.1 Consensus size: 71
68459259 TCTTTTCCTA
* ** **
68459269 TTAAAAATATATTGAATATATTAAAATTTTAATTTTTTTTATACTTAACATTTTTTAATATATTT
1 TTAAAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTT
68459334 AATTTT
66 AATTTT
68459340 TTAAAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTT
1 TTAAAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTT
68459405 AATTTT
66 AATTTT
68459411 TTAA
1 TTAA
68459415 GTTTTTTAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (71 bp):
TTAAAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTT
AATTTT
Found at i:68459363 original size:20 final size:20
Alignment explanation
Indices: 68459325--68459365 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
68459315 AACATTTTTT
* * *
68459325 AATATATTTAATTTTTTAAA
1 AATATATTAAATATATTAAA
68459345 AATATATTAAATATATTAAA
1 AATATATTAAATATATTAAA
68459365 A
1 A
68459366 TTTTAAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATATATTAAATATATTAAA
Found at i:68460061 original size:19 final size:20
Alignment explanation
Indices: 68460026--68460069 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
68460016 ATATATATTT
*
68460026 AAATAAATTTATTTTTTAAC
1 AAATAAATCTATTTTTTAAC
68460046 AAATAAATCT-TTTTTTAAC
1 AAATAAATCTATTTTTTAAC
68460065 AAATA
1 AAATA
68460070 TTTTTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATAAATCTATTTTTTAAC
Found at i:68460079 original size:19 final size:20
Alignment explanation
Indices: 68460026--68460080 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
68460016 ATATATATTT
68460026 AAATAAA-TTTATTTTTTAAC
1 AAATAAATTTTA-TTTTTAAC
*
68460046 AAATAAATCTT-TTTTTAAC
1 AAATAAATTTTATTTTTAAC
*
68460065 AAAT-ATTTTTATTTTT
1 AAATAAATTTTATTTTT
68460081 TCTAATTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 4 0.13
19 17 0.57
20 7 0.23
21 2 0.07
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (20 bp):
AAATAAATTTTATTTTTAAC
Found at i:68460212 original size:24 final size:24
Alignment explanation
Indices: 68460168--68460213 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
68460158 AATATCTTTA
*
68460168 AAAATAATATAAAAATCATAATTT
1 AAAATAATATAAAAATAATAATTT
* *
68460192 AAAATATTATAAAACTAATAAT
1 AAAATAATATAAAAATAATAAT
68460214 AAAATTGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (24 bp):
AAAATAATATAAAAATAATAATTT
Found at i:68460270 original size:20 final size:20
Alignment explanation
Indices: 68460245--68460315 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 20
68460235 TAAAATATTT
68460245 AAATAT-TTTATATTATTAAA
1 AAATATATTTA-ATTATTAAA
68460265 AAATATATTTAA-TATTTAAA
1 AAATATATTTAATTA-TTAAA
68460285 AAATAATATTTAAAATT-TTAAA
1 AAAT-ATATTT--AATTATTAAA
68460307 AAATA-ATTT
1 AAATATATTT
68460316 CAAATATATA
Statistics
Matches: 45, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
19 2 0.04
20 20 0.44
21 11 0.24
22 9 0.20
23 2 0.04
24 1 0.02
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATATATTTAATTATTAAA
Found at i:68460286 original size:21 final size:21
Alignment explanation
Indices: 68460247--68460315 Score: 88
Period size: 22 Copynumber: 3.3 Consensus size: 21
68460237 AAATATTTAA
*
68460247 ATATTTTATATTATTAAAAAAT
1 ATATTTAATATT-TTAAAAAAT
68460269 ATATTTAATA-TTTAAAAAAT
1 ATATTTAATATTTTAAAAAAT
*
68460289 AATATTTAAAATTTTAAAAAAT
1 -ATATTTAATATTTTAAAAAAT
68460311 A-ATTT
1 ATATTT
68460316 CAAATATATA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
20 13 0.30
21 11 0.26
22 19 0.44
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
ATATTTAATATTTTAAAAAAT
Found at i:68460320 original size:20 final size:21
Alignment explanation
Indices: 68460260--68460322 Score: 78
Period size: 20 Copynumber: 3.0 Consensus size: 21
68460250 TTTTATATTA
68460260 TTAAAAAATATATTT-AATAT
1 TTAAAAAATATATTTAAATAT
68460280 TTAAAAAATAATATTTAAA-ATT
1 TTAAAAAAT-ATATTTAAATA-T
68460302 TTAAAAAATA-ATTTCAAATAT
1 TTAAAAAATATATTT-AAATAT
68460323 ATATTTAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
20 13 0.34
21 12 0.32
22 13 0.34
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TTAAAAAATATATTTAAATAT
Found at i:68460389 original size:23 final size:23
Alignment explanation
Indices: 68460317--68460389 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
68460307 AAATAATTTC
**
68460317 AAATATATATTTAAAATTTTAAA
1 AAATATATATTTAAAATTTTTTA
*
68460340 AAATATATATTATAAAATATTTT-
1 AAATATATATT-TAAAATTTTTTA
* *
68460363 AAATATACATTTCAAATTTTTTA
1 AAATATATATTTAAAATTTTTTA
68460386 AAAT
1 AAAT
68460390 TAATAATAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
22 9 0.21
23 25 0.60
24 8 0.19
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (23 bp):
AAATATATATTTAAAATTTTTTA
Found at i:68461598 original size:20 final size:21
Alignment explanation
Indices: 68461559--68461601 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
68461549 TCAGCCCTCC
**
68461559 ATTTATTTTTATTATGTGTTG
1 ATTTATTTTTATTAAATGTTG
68461580 ATTT-TTTTTATTAAATGTTG
1 ATTTATTTTTATTAAATGTTG
68461600 AT
1 AT
68461602 ACTTACACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (21 bp):
ATTTATTTTTATTAAATGTTG
Found at i:68464585 original size:132 final size:131
Alignment explanation
Indices: 68464313--68464689 Score: 391
Period size: 132 Copynumber: 2.9 Consensus size: 131
68464303 GTGAAAACCT
* ** * * * * * *
68464313 AAAGGAATATTCGATCGTTTTGAACAAGCGAGAAATCACAACCCAGCACGATAGGGCATGATTCC
1 AAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCC
* * * * * * * * * *
68464378 CGAATTGTCAAACACCGAGTATTGCCTTCGTTTTAGAGGATTTTTAGAAGACCTGAATGGAATCT
66 CGAATTGCCAAATATCAAATATTGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAATCT
68464443 C
131 C
*
68464444 AAAGGGATATTTGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCC
1 AAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCC
* * *
68464509 ATGAATTGCCAAATATCAAACT-TTGCCTTCGTTTTAAAGAATTTTTAAAAGGCATGAGTGAAAG
66 -CGAATTGCCAAATATCAAA-TATTGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAA-
*
68464573 T-TT
128 TCTC
* * * *
68464576 GAAGGGATATTCGATTATTTCGAGCAAACGCA-AAATTGCAACCCAACACGTTAGGGCACTATTC
1 AAAGGGATATTCGATTATTTTGAGCAAACG-AGAAATTACAACCCAACACGTTAGGGCACGATTC
* *** *
68464640 CGCGAATTGCCAAATATCGAATCCCGTCTTCGTTTTAAAGAATTTTTAAA
65 C-CGAATTGCCAAATATCAAATATTGCCTTCGTTTTAAAGAATTTTTAAA
68464690 TGAATACTTG
Statistics
Matches: 206, Mismatches: 35, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
131 56 0.27
132 147 0.71
133 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (131 bp):
AAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCC
CGAATTGCCAAATATCAAATATTGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAATCT
C
Found at i:68469797 original size:17 final size:17
Alignment explanation
Indices: 68469775--68469807 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
68469765 AAAGTTCAAA
68469775 AGAAAAGGAA-AAAAAAC
1 AGAAAA-GAACAAAAAAC
68469792 AGAAAAGAACAAAAAA
1 AGAAAAGAACAAAAAA
68469808 GGGAAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.79, C:0.06, G:0.15, T:0.00
Consensus pattern (17 bp):
AGAAAAGAACAAAAAAC
Found at i:68469860 original size:23 final size:21
Alignment explanation
Indices: 68469833--68469878 Score: 65
Period size: 23 Copynumber: 2.1 Consensus size: 21
68469823 GAAACAATCA
*
68469833 AAATAACTAAAATAGAAATAAAT
1 AAATAAATAAAATA-AAA-AAAT
68469856 AAATAAATAAAATAAAAAAAT
1 AAATAAATAAAATAAAAAAAT
68469877 AA
1 AA
68469879 GTAGAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.27
22 3 0.14
23 13 0.59
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (21 bp):
AAATAAATAAAATAAAAAAAT
Found at i:68469870 original size:17 final size:18
Alignment explanation
Indices: 68469842--68469886 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
68469832 AAAATAACTA
*
68469842 AAATAGAAATAAATAAAT
1 AAATAGAAATAAAAAAAT
68469860 AAATA-AAATAAAAAAAT
1 AAATAGAAATAAAAAAAT
*
68469877 AAGTAGAAAT
1 AAATAGAAAT
68469887 TATTAACTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (18 bp):
AAATAGAAATAAAAAAAT
Found at i:68471798 original size:12 final size:12
Alignment explanation
Indices: 68471781--68471805 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68471771 ATAAATAAAT
68471781 AGAAAGAAAAGG
1 AGAAAGAAAAGG
68471793 AGAAAGAAAAGG
1 AGAAAGAAAAGG
68471805 A
1 A
68471806 AAATTTTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAGG
Found at i:68472474 original size:30 final size:29
Alignment explanation
Indices: 68472440--68472499 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
68472430 AGTCCTTGTA
68472440 TTTTTGAATTAGTCAATTATAGTCTATGAC
1 TTTTTGAATTAGTCAATTATAGTCT-TGAC
* *
68472470 TTTTTGAATTGGTCAATTTTAGTCTTGAC
1 TTTTTGAATTAGTCAATTATAGTCTTGAC
68472499 T
1 T
68472500 CAAATAGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (29 bp):
TTTTTGAATTAGTCAATTATAGTCTTGAC
Found at i:68473081 original size:21 final size:21
Alignment explanation
Indices: 68473055--68473098 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
68473045 ACATCAAACG
68473055 CAACTTAG-GTAAATGTCACTT
1 CAACTT-GCGTAAATGTCACTT
* *
68473076 CAACTTGCGTGAATGTTACTT
1 CAACTTGCGTAAATGTCACTT
68473097 CA
1 CA
68473099 TGCAAATGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (21 bp):
CAACTTGCGTAAATGTCACTT
Found at i:68474886 original size:19 final size:19
Alignment explanation
Indices: 68474840--68474911 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
68474830 TATATATTAC
*
68474840 TATTATATATTATTTTCCTCA
1 TATTAT-TATTATTTT-CACA
* * *
68474861 AATTATTATTATTTTTATA
1 TATTATTATTATTTTCACA
68474880 TATTATTA-TATTTTCACA
1 TATTATTATTATTTTCACA
68474898 TA-TATTATATATTT
1 TATTATTAT-TATTT
68474912 ATTAATTATT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 5 0.12
18 10 0.24
19 13 0.31
20 9 0.21
21 5 0.12
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTATTATTATTTTCACA
Found at i:68474969 original size:47 final size:46
Alignment explanation
Indices: 68474862--68474969 Score: 107
Period size: 47 Copynumber: 2.3 Consensus size: 46
68474852 TTTTCCTCAA
68474862 ATTATTATTAT-TTTTATATATTATTATATTTTCACATATATTATAT
1 ATTA-TATTATATTTTATATATTATTATATTTTCACATATATTATAT
* * *
68474908 ATT-TATTAATTATTTTATATATATATCT-TGTTTT-ACATGTTATTTTAT
1 ATTATATT-A-TATTTTATATAT-TAT-TATATTTTCACAT-ATATTATAT
68474956 ATTATATTATATTT
1 ATTATATTATATTT
68474970 CTTATATGTT
Statistics
Matches: 52, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
44 4 0.08
45 1 0.02
46 4 0.08
47 19 0.37
48 19 0.37
49 5 0.10
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (46 bp):
ATTATATTATATTTTATATATTATTATATTTTCACATATATTATAT
Found at i:68474995 original size:27 final size:28
Alignment explanation
Indices: 68474954--68475007 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
68474944 ATGTTATTTT
*
68474954 ATATTATATTATA-TTTCTTATATGTTC
1 ATATTACATTATATTTTCTTATATGTTC
* *
68474981 ATATTACATTTTATTTTTTTATATGTT
1 ATATTACATTATATTTTCTTATATGTT
68475008 ATGTATATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.63
Consensus pattern (28 bp):
ATATTACATTATATTTTCTTATATGTTC
Found at i:68475061 original size:20 final size:20
Alignment explanation
Indices: 68475028--68475066 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
68475018 TGTATCGCCA
* *
68475028 ATTATATTTTTTATGATTAC
1 ATTATATATATTATGATTAC
*
68475048 ATTATATATATTATTATTA
1 ATTATATATATTATGATTA
68475067 TTATTAAATC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
ATTATATATATTATGATTAC
Found at i:68475080 original size:26 final size:24
Alignment explanation
Indices: 68475030--68475080 Score: 57
Period size: 26 Copynumber: 2.0 Consensus size: 24
68475020 TATCGCCAAT
* *
68475030 TATATTTTTTATGATTACATTATA
1 TATATTTTTTATGATTAAATCATA
*
68475054 TATATTATTATTATTATTAAATCATA
1 TATATT-TT-TTATGATTAAATCATA
68475080 T
1 T
68475081 TTTTAACCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 6 0.27
25 2 0.09
26 14 0.64
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (24 bp):
TATATTTTTTATGATTAAATCATA
Found at i:68475143 original size:19 final size:19
Alignment explanation
Indices: 68475092--68475146 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
68475082 TTTAACCCAC
68475092 ACTATATATATATTTT-TGTT
1 ACTATATAT-TATTTTAT-TT
*
68475112 AAT-TAT-TTA-TTTATTT
1 ACTATATATTATTTTATTT
68475128 ACTATATATTATTTTATTT
1 ACTATATATTATTTTATTT
68475147 TAAACTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 7 0.24
17 6 0.21
18 4 0.14
19 10 0.34
20 2 0.07
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (19 bp):
ACTATATATTATTTTATTT
Found at i:68479887 original size:30 final size:29
Alignment explanation
Indices: 68479853--68479912 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
68479843 AGTCCTTGTA
68479853 TTTTTGAATTAGTCAATTCTAGTCTATGAC
1 TTTTTGAATTAGTCAATTCTAGTCT-TGAC
* *
68479883 TTTTTGAATTGGTCAATTTTAGTCTTGAC
1 TTTTTGAATTAGTCAATTCTAGTCTTGAC
68479912 T
1 T
68479913 CAAATAGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (29 bp):
TTTTTGAATTAGTCAATTCTAGTCTTGAC
Found at i:68480490 original size:21 final size:21
Alignment explanation
Indices: 68480464--68480507 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
68480454 ACATCAAACG
68480464 CAACTTAG-GTAAATGTCACTT
1 CAACTT-GCGTAAATGTCACTT
* *
68480485 CAACTTGCGTGAATGTTACTT
1 CAACTTGCGTAAATGTCACTT
68480506 CA
1 CA
68480508 TGCAAATGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (21 bp):
CAACTTGCGTAAATGTCACTT
Found at i:68485228 original size:27 final size:28
Alignment explanation
Indices: 68485180--68485233 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
68485170 TAAAATAGGA
* *
68485180 AAAATAATATATTTGGTAATAATAATAT
1 AAAATAATATATATGGTAATAAAAATAT
68485208 AAAATAATA-ATAT-GTACATAAAAATA
1 AAAATAATATATATGGTA-ATAAAAATA
68485234 CATATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.13
27 11 0.48
28 9 0.39
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (28 bp):
AAAATAATATATATGGTAATAAAAATAT
Found at i:68485247 original size:22 final size:20
Alignment explanation
Indices: 68485196--68485291 Score: 67
Period size: 19 Copynumber: 4.8 Consensus size: 20
68485186 ATATATTTGG
68485196 TAATA-ATA-ATATAAAATAA
1 TAATATATACATA-AAAATAA
*
68485215 TAATATGTACATAAAAATACA
1 TAATATATACATAAAAATA-A
*
68485236 TATATATATACAT-ATAATAA
1 TA-ATATATACATAAAAATAA
* *
68485256 -AAGTATGTA-ATAATAATAA
1 TAA-TATATACATAAAAATAA
*
68485275 TAATATCTACAATAAAA
1 TAATATATAC-ATAAAA
68485292 GAAAATATTA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
18 3 0.05
19 23 0.37
20 11 0.18
21 16 0.26
22 9 0.15
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (20 bp):
TAATATATACATAAAAATAA
Found at i:68485816 original size:17 final size:17
Alignment explanation
Indices: 68485794--68485852 Score: 65
Period size: 17 Copynumber: 3.7 Consensus size: 17
68485784 TTCTTGGTTT
68485794 TTTTTTTTTGGGTTAGG
1 TTTTTTTTTGGGTTAGG
*
68485811 TTTTTTTTCT--CTT---
1 TTTTTTTT-TGGGTTAGG
68485824 TTTTTTTTTGGGTTAGG
1 TTTTTTTTTGGGTTAGG
68485841 TTTTTTTTTGGG
1 TTTTTTTTTGGG
68485853 AGGGCTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
12 1 0.03
13 8 0.24
14 2 0.06
16 2 0.06
17 20 0.59
18 1 0.03
ACGTcount: A:0.03, C:0.03, G:0.22, T:0.71
Consensus pattern (17 bp):
TTTTTTTTTGGGTTAGG
Found at i:68485828 original size:30 final size:30
Alignment explanation
Indices: 68485792--68485848 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
68485782 GTTTCTTGGT
68485792 TTTTTTTTTTTGGGTTAGGTTTTTTTTCTC
1 TTTTTTTTTTTGGGTTAGGTTTTTTTTCTC
68485822 TTTTTTTTTTTGGGTTAGGTTTTTTTT
1 TTTTTTTTTTTGGGTTAGGTTTTTTTT
68485849 TGGGAGGGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.04, C:0.04, G:0.18, T:0.75
Consensus pattern (30 bp):
TTTTTTTTTTTGGGTTAGGTTTTTTTTCTC
Found at i:68486933 original size:72 final size:72
Alignment explanation
Indices: 68486717--68486975 Score: 358
Period size: 72 Copynumber: 3.5 Consensus size: 72
68486707 GTGATCTGAA
68486717 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACCTCAGC
* *
68486782 ATGTGAACCAAG
64 --GTG-TCCGAG
* *
68486794 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAGCG
*
68486859 TGTCTTGAG
65 TGTC-CGAG
** * *
68486868 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGT
68486932 GTCCCGAG
66 GT-CCGAG
68486940 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
68486976 NNNNNNNNNN
Statistics
Matches: 164, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
72 64 0.39
73 6 0.04
74 32 0.20
76 22 0.13
77 40 0.24
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (72 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGT
GTCCGAG
Found at i:68497898 original size:22 final size:22
Alignment explanation
Indices: 68497873--68497949 Score: 91
Period size: 22 Copynumber: 3.3 Consensus size: 22
68497863 GGTTTCTTGG
68497873 TTTTTTTTTGGGGGTTAGGTTT
1 TTTTTTTTTGGGGGTTAGGTTT
**
68497895 TTTTTTTTTTTGGGTTAGGTTTTT
1 TTTTTTTTTGGGGGTTAGG--TTT
68497919 TCTTTTTTTTGGGGGGGTTAGGTTT
1 T-TTTTTTTT--GGGGGTTAGGTTT
68497944 TTTTTT
1 TTTTTT
68497950 GGGGAGGGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
22 17 0.37
24 9 0.20
25 12 0.26
27 8 0.17
ACGTcount: A:0.04, C:0.01, G:0.27, T:0.68
Consensus pattern (22 bp):
TTTTTTTTTGGGGGTTAGGTTT
Found at i:68500074 original size:22 final size:22
Alignment explanation
Indices: 68500046--68500102 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
68500036 CGCGATTCAA
68500046 TTTTTTATATTAAAT-TTTTTT
1 TTTTTTATATTAAATATTTTTT
* *
68500067 GTTTTTTAAATAAAATATTTTTT
1 -TTTTTTATATTAAATATTTTTT
*
68500090 TATTTT-TATTAAA
1 TTTTTTATATTAAA
68500103 AATATTTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 5 0.17
22 18 0.62
23 6 0.21
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (22 bp):
TTTTTTATATTAAATATTTTTT
Found at i:68500103 original size:22 final size:22
Alignment explanation
Indices: 68500046--68500109 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 22
68500036 CGCGATTCAA
*
68500046 TTTTTTATATTAAAT-TTTTTTG
1 TTTTTTAT-TAAAATATTTTTTG
*
68500068 TTTTTTAAATAAAATATTTTTT-
1 TTTTTT-ATTAAAATATTTTTTG
68500090 TATTTTTATTAAAAATATTT
1 T-TTTTTATT-AAAATATTT
68500110 AAATATATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
22 14 0.40
23 21 0.60
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (22 bp):
TTTTTTATTAAAATATTTTTTG
Found at i:68500610 original size:60 final size:60
Alignment explanation
Indices: 68500498--68500612 Score: 178
Period size: 60 Copynumber: 1.9 Consensus size: 60
68500488 TTTTTATAAC
* * **
68500498 TATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTAAAATTTTTTGTGTTTGTAAT
1 TATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTAAAATTTACTGTGTTTGTAAT
68500558 TATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAA-TTACTGTGTTT
1 TATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTA-AAATTTACTGTGTTT
68500613 AGTTTAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
60 47 0.94
61 3 0.06
ACGTcount: A:0.34, C:0.01, G:0.12, T:0.53
Consensus pattern (60 bp):
TATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTAAAATTTACTGTGTTTGTAAT
Found at i:68505229 original size:19 final size:20
Alignment explanation
Indices: 68505176--68505229 Score: 51
Period size: 19 Copynumber: 2.7 Consensus size: 20
68505166 AATTTTATAG
*
68505176 TAATAAGAAAGAACCAAAACAA
1 TAATAA-AAAGAA-TAAAACAA
68505198 TAA-AAATAA-AATAAAACAA
1 TAATAAA-AAGAATAAAACAA
68505217 -AATAAAAAGAATA
1 TAATAAAAAGAATA
68505230 GCTTTTACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
18 4 0.14
19 14 0.50
20 3 0.11
21 4 0.14
22 3 0.11
ACGTcount: A:0.74, C:0.07, G:0.06, T:0.13
Consensus pattern (20 bp):
TAATAAAAAGAATAAAACAA
Found at i:68505531 original size:28 final size:28
Alignment explanation
Indices: 68505499--68505558 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
68505489 TTATTATTTC
68505499 AAAATTTATTTGGTGGAACATTAATGTT
1 AAAATTTATTTGGTGGAACATTAATGTT
* *
68505527 AAAATTTGTTTGGTGGACCATTAATGTT
1 AAAATTTATTTGGTGGAACATTAATGTT
68505555 AAAA
1 AAAA
68505559 CTTGTTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.40
Consensus pattern (28 bp):
AAAATTTATTTGGTGGAACATTAATGTT
Found at i:68505563 original size:28 final size:28
Alignment explanation
Indices: 68505507--68505564 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
68505497 TCAAAATTTA
*
68505507 TTTGGTGGAACATTAATGTTAAAATTTG
1 TTTGGTGGAACATTAATGTTAAAACTTG
*
68505535 TTTGGTGGACCATTAATGTTAAAACTTG
1 TTTGGTGGAACATTAATGTTAAAACTTG
68505563 TT
1 TT
68505565 ATTTCTTTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (28 bp):
TTTGGTGGAACATTAATGTTAAAACTTG
Found at i:68506012 original size:67 final size:63
Alignment explanation
Indices: 68505879--68506004 Score: 162
Period size: 67 Copynumber: 1.9 Consensus size: 63
68505869 TTCAGCACTA
* * * * *
68505879 GCACCAAAAAATAAAAAAAAATATTTTTTAATTTTTTAATTGGTATCGGCCACTTCAACACCG
1 GCACCAAAAAATAAAAAAAAATATTTTTAAAGTTTTGAATCGGTATCAGCCACTTCAACACCG
*
68505942 GCACCAAAAAATAAAAAAAAAATCAAATTTTTAAAGTTTTGAATCGGTGTCAGCCACTTCAAC
1 GCACCAAAAAAT-AAAAAAAAAT---ATTTTTAAAGTTTTGAATCGGTATCAGCCACTTCAAC
68506005 GTTGGCACTT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
63 12 0.23
64 10 0.19
67 31 0.58
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (63 bp):
GCACCAAAAAATAAAAAAAAATATTTTTAAAGTTTTGAATCGGTATCAGCCACTTCAACACCG
Found at i:68508391 original size:28 final size:28
Alignment explanation
Indices: 68508337--68508397 Score: 122
Period size: 28 Copynumber: 2.2 Consensus size: 28
68508327 TGGGTTTCCA
68508337 GTTTGCTCTCTTTGAGTTCCACTTTCGG
1 GTTTGCTCTCTTTGAGTTCCACTTTCGG
68508365 GTTTGCTCTCTTTGAGTTCCACTTTCGG
1 GTTTGCTCTCTTTGAGTTCCACTTTCGG
68508393 GTTTG
1 GTTTG
68508398 TTCTTCCTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.07, C:0.23, G:0.23, T:0.48
Consensus pattern (28 bp):
GTTTGCTCTCTTTGAGTTCCACTTTCGG
Found at i:68510069 original size:19 final size:19
Alignment explanation
Indices: 68510045--68510081 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
68510035 TTCAAACACC
68510045 AGAAAAGTAAATCATTTTT
1 AGAAAAGTAAATCATTTTT
*
68510064 AGAAAAGTAAATTATTTT
1 AGAAAAGTAAATCATTTT
68510082 CCAGAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.38
Consensus pattern (19 bp):
AGAAAAGTAAATCATTTTT
Found at i:68510450 original size:20 final size:21
Alignment explanation
Indices: 68510425--68510464 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
68510415 GAATATATTA
68510425 TAATAAAAA-ATATTAAAAAT
1 TAATAAAAATATATTAAAAAT
*
68510445 TAATAAAAATATTTTAAAAA
1 TAATAAAAATATATTAAAAA
68510465 ATATTTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
TAATAAAAATATATTAAAAAT
Found at i:68511259 original size:7 final size:7
Alignment explanation
Indices: 68511247--68511271 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
68511237 GCTATCCTTC
68511247 TTTTTCT
1 TTTTTCT
68511254 TTTTTCT
1 TTTTTCT
68511261 TTTTTCT
1 TTTTTCT
68511268 TTTT
1 TTTT
68511272 GTATTGGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTCT
Found at i:68514299 original size:19 final size:19
Alignment explanation
Indices: 68514272--68514309 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
68514262 TAGAGATGGT
*
68514272 GAAAGAAAGAAACGAAAAA
1 GAAAAAAAGAAACGAAAAA
*
68514291 GAAAAAAAGAAAGGAAAAA
1 GAAAAAAAGAAACGAAAAA
68514310 AAAGTTGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (19 bp):
GAAAAAAAGAAACGAAAAA
Found at i:68537384 original size:11 final size:11
Alignment explanation
Indices: 68537368--68537400 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
68537358 TTTAATAAAA
*
68537368 TATTATTTTAT
1 TATTATATTAT
68537379 TATTATATTAT
1 TATTATATTAT
68537390 TATTATATTAT
1 TATTATATTAT
68537401 ATCAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TATTATATTAT
Found at i:68537544 original size:5 final size:5
Alignment explanation
Indices: 68537536--68537566 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
68537526 GATATTATGT
68537536 TATTA TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA T
68537567 TATAAACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:68538427 original size:19 final size:19
Alignment explanation
Indices: 68538405--68538464 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 19
68538395 TATATATATA
68538405 TTGAATATATATTGATTAT
1 TTGAATATATATTGATTAT
68538424 TTGAAT-TGA-ATTGA--AT
1 TTGAATAT-ATATTGATTAT
*
68538440 TATGAGTATAT-TTGATTAT
1 T-TGAATATATATTGATTAT
68538459 TTGAAT
1 TTGAAT
68538465 TGAAATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
16 3 0.09
17 9 0.27
18 11 0.33
19 10 0.30
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (19 bp):
TTGAATATATATTGATTAT
Found at i:68543459 original size:19 final size:20
Alignment explanation
Indices: 68543435--68543472 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68543425 GGTACCACCA
68543435 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
68543454 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
68543473 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:68543812 original size:93 final size:93
Alignment explanation
Indices: 68543702--68543872 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
68543692 GCCCCTAAGT
* *
68543702 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
68543767 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
68543795 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
68543860 CGAGTTCGGATGC
66 CGAGTTCGGATGC
68543873 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:68543869 original size:46 final size:46
Alignment explanation
Indices: 68543697--68543869 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
68543687 AACCCGCCCC
* * * *
68543697 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
68543743 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
68543791 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
68543836 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68543870 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:68554993 original size:127 final size:124
Alignment explanation
Indices: 68554754--68555021 Score: 385
Period size: 127 Copynumber: 2.1 Consensus size: 124
68554744 AGCCAAACAT
** * *
68554754 GAACTACTGTAGAAAAAGAGCGTCCTTGTGGGAGTTTTTTTAGAAATTTTATTGACATTGCATCC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTAAAAATTTTACTGACATTGCATCC
* *
68554819 TGCTTGAAGCTTTTTGACATTATTTGTTCGTAAACGTCTTCTTAAAATCATTTTTTCAG
66 TGCTTGAAGCTTTTTGACACTATTTGTTCGTAAACGTCTTCTCAAAATCATTTTTTCAG
* * * *
68554878 GAACTACTATAGAAAAAGAGTGTTCACGTGGGAGTTTTTTTTCAAAAATTTTGCTGACATTGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAG-TTTTTTT-AAAAATTTTACTGACATTGCAT
* *
68554943 CCTTCTTGAAGCGTTTTTGACACTATTTGTTCAG-AAACGTCTTCTCAAAATTATTTTTTCAG
64 CCTGCTTGAAGC-TTTTTGACACTATTTGTTC-GTAAACGTCTTCTCAAAATCATTTTTTCAG
68555005 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
68555022 CCATAAACAC
Statistics
Matches: 127, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
124 29 0.23
125 7 0.06
126 30 0.24
127 60 0.47
128 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (124 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTAAAAATTTTACTGACATTGCATCC
TGCTTGAAGCTTTTTGACACTATTTGTTCGTAAACGTCTTCTCAAAATCATTTTTTCAG
Found at i:68555134 original size:35 final size:34
Alignment explanation
Indices: 68555095--68555169 Score: 114
Period size: 35 Copynumber: 2.2 Consensus size: 34
68555085 CTACTAAAAT
68555095 CCTAAACCCTAACTTATTTTAAAAAAAACCTAAAC
1 CCTAAACCCTAACTTATTTTAAAAAAAACCT-AAC
** *
68555130 CCTAAACCCTAACTTATTTTAGCAAAACCCTAAC
1 CCTAAACCCTAACTTATTTTAAAAAAAACCTAAC
68555164 CCTAAA
1 CCTAAA
68555170 AACCCTAAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
34 9 0.24
35 28 0.76
ACGTcount: A:0.44, C:0.29, G:0.01, T:0.25
Consensus pattern (34 bp):
CCTAAACCCTAACTTATTTTAAAAAAAACCTAAC
Found at i:68557519 original size:46 final size:47
Alignment explanation
Indices: 68557466--68557567 Score: 118
Period size: 46 Copynumber: 2.2 Consensus size: 47
68557456 AGTGAAGGTC
*
68557466 CCAGTTGAC-GACCGTTATGTGGTCAAGGGCTCGAATATAACT-GGGG
1 CCAGTTGACAG-CCGTTATGCGGTCAAGGGCTCGAATATAACTGGGGG
* * * * *
68557512 CCAGTTGACAGCCGTTATGCGGTTATGGGTTCGAGTATAATTGGGGGG
1 CCAGTTGACAGCCGTTATGCGGTCAAGGGCTCGAATATAACT-GGGGG
68557560 CCAGTTGA
1 CCAGTTGA
68557568 TGGTTGTCAT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
46 34 0.72
47 1 0.02
48 12 0.26
ACGTcount: A:0.22, C:0.18, G:0.34, T:0.26
Consensus pattern (47 bp):
CCAGTTGACAGCCGTTATGCGGTCAAGGGCTCGAATATAACTGGGGG
Found at i:68558714 original size:94 final size:94
Alignment explanation
Indices: 68558553--68558740 Score: 331
Period size: 94 Copynumber: 2.0 Consensus size: 94
68558543 ACCGATCCAT
* * *
68558553 GGTTAAAAACGTGTCACAAAATAGGCATTTTCATTGAAAATTTGAAAAAGGTACTTGAAAACATA
1 GGTTAAAAACGTGTCACAAAATAGGCATTTTCATCGAAAATCTGAAAAAGATACTTGAAAACATA
68558618 CCCGAGATTCCCGAGCCCAGGGCATCTTA
66 CCCGAGATTCCCGAGCCCAGGGCATCTTA
* *
68558647 GGTTAAAAACGTGTCACAAAATAGGTATTTTCATCGAAAATCTGAAAGAGATACTTGAAAACATA
1 GGTTAAAAACGTGTCACAAAATAGGCATTTTCATCGAAAATCTGAAAAAGATACTTGAAAACATA
68558712 CCCGAGATTCCCGAGCCCAGGGCATCTTA
66 CCCGAGATTCCCGAGCCCAGGGCATCTTA
68558741 CCATAGATGC
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 89 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (94 bp):
GGTTAAAAACGTGTCACAAAATAGGCATTTTCATCGAAAATCTGAAAAAGATACTTGAAAACATA
CCCGAGATTCCCGAGCCCAGGGCATCTTA
Found at i:68560657 original size:26 final size:26
Alignment explanation
Indices: 68560625--68560685 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
68560615 AGAAGCTTCG
68560625 AAGAGCCATTAATCAAGAAGCTCACA
1 AAGAGCCATTAATCAAGAAGCTCACA
* *
68560651 AAGAGCCTTTAATCGAGAAGCTCACA
1 AAGAGCCATTAATCAAGAAGCTCACA
68560677 AAGAGCCAT
1 AAGAGCCAT
68560686 ATAACGGGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.43, C:0.23, G:0.18, T:0.16
Consensus pattern (26 bp):
AAGAGCCATTAATCAAGAAGCTCACA
Found at i:68560700 original size:26 final size:26
Alignment explanation
Indices: 68560611--68560689 Score: 90
Period size: 26 Copynumber: 3.0 Consensus size: 26
68560601 GCAAGCTAAT
* *
68560611 ATCGAGAAGCT-TCGAAGAGCC-ATTA
1 ATCGAGAAGCTCACAAAGAGCCTA-TA
* *
68560636 ATCAAGAAGCTCACAAAGAGCCTTTA
1 ATCGAGAAGCTCACAAAGAGCCTATA
68560662 ATCGAGAAGCTCACAAAGAGCCATATA
1 ATCGAGAAGCTCACAAAGAGCC-TATA
68560689 A
1 A
68560690 CGGGACACTC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
25 10 0.22
26 31 0.69
27 4 0.09
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.18
Consensus pattern (26 bp):
ATCGAGAAGCTCACAAAGAGCCTATA
Found at i:68594002 original size:39 final size:39
Alignment explanation
Indices: 68593907--68594075 Score: 223
Period size: 39 Copynumber: 4.3 Consensus size: 39
68593897 GGTCTTTAAC
** * *
68593907 CCGGATATTTTTCCAGCACGTAGCCTGCGGA-CTTAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * * *
68593945 TCGGATATATTTCTAGCATATAGCCTGCGGATCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
68593984 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * *
68594023 CCGGATATATTTCTAGCATATAGCCTGCAGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
68594062 CCGGATATATTTTC
1 CCGGATAT-TTTTC
68594076 AATCTCATAT
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 26 0.23
39 84 0.74
40 4 0.04
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:68594059 original size:78 final size:77
Alignment explanation
Indices: 68593907--68594075 Score: 257
Period size: 78 Copynumber: 2.2 Consensus size: 77
68593897 GGTCTTTAAC
* * *
68593907 CCGGATATTTTTCCAGCACGTAGCCTGCGGACTTAAGTTCGGATATATTTCTAGCATATAGCCTG
1 CCGGATATTTTTCCAGCACATAGCCTGCGGACTCAAGTCCGGATATATTTCTAGCATATAGCCTG
* *
68593972 CGGATCTCATGT
66 CAGACCTCATGT
* *
68593984 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTTCTAGCATATAGCCT
1 CCGGATATTTTTCCAGCACATAGCCTGCGGA-CTCAAGTCCGGATATATTTCTAGCATATAGCCT
68594049 GCAGACCTCATGT
65 GCAGACCTCATGT
68594062 CCGGATATATTTTC
1 CCGGATAT-TTTTC
68594076 AATCTCATAT
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
77 29 0.35
78 49 0.59
79 5 0.06
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (77 bp):
CCGGATATTTTTCCAGCACATAGCCTGCGGACTCAAGTCCGGATATATTTCTAGCATATAGCCTG
CAGACCTCATGT
Found at i:68613015 original size:6 final size:6
Alignment explanation
Indices: 68612981--68613040 Score: 63
Period size: 6 Copynumber: 10.3 Consensus size: 6
68612971 TTTGAGTCTA
* *
68612981 TTTATT TTT-TA TTTATT TTT-TGC TTTATT TTTATT TTTATT TTTA-T
1 TTTATT TTTATT TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT
*
68613027 TTTATG TTTATT TT
1 TTTATT TTTATT TT
68613041 AAAGACTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
5 10 0.23
6 33 0.75
7 1 0.02
ACGTcount: A:0.15, C:0.02, G:0.03, T:0.80
Consensus pattern (6 bp):
TTTATT
Done.