Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 206 of 284
Found at i:68613029 original size:11 final size:11
Alignment explanation
Indices: 68612981--68613041 Score: 63
Period size: 11 Copynumber: 5.4 Consensus size: 11
68612971 TTTGAGTCTA
68612981 TTTATTTTT-T
1 TTTATTTTTAT
68612991 ATTTATTTTT-T
1 -TTTATTTTTAT
68613002 GCTTTATTTTTATT
1 --TTTATTTTTA-T
68613016 TTTATTTTTAT
1 TTTATTTTTAT
*
68613027 TTTATGTTTAT
1 TTTATTTTTAT
68613038 TTTA
1 TTTA
68613042 AAGACTTTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
11 25 0.56
12 19 0.42
14 1 0.02
ACGTcount: A:0.16, C:0.02, G:0.03, T:0.79
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:68620634 original size:39 final size:39
Alignment explanation
Indices: 68620588--68620725 Score: 231
Period size: 39 Copynumber: 3.5 Consensus size: 39
68620578 TCTGATGAGA
*
68620588 TTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGTGC
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGC
*
68620627 TTCAGTTAGCCTTCGGGCTTTCGTTTAGCACTTATGTGC
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGC
*
68620666 TTCAGTTAGCCTTCGGGCTTTCGTTTAGCACTTATGTGC
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGC
* *
68620705 TTCAGCTAGACTTCGGGCTTC
1 TTCAGTTAGCCTTCGGGCTTC
68620726 AGATCACGAT
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 94 1.00
ACGTcount: A:0.14, C:0.25, G:0.22, T:0.39
Consensus pattern (39 bp):
TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGC
Found at i:68626681 original size:34 final size:34
Alignment explanation
Indices: 68626633--68626701 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
68626623 AGACCTTGAA
68626633 AATTTTAAACCGAGCCATAAATATTTTTATAAAT
1 AATTTTAAACCGAGCCATAAATATTTTTATAAAT
*
68626667 AATTTTAAATCGAGCCATAAATATTTTTATAAAT
1 AATTTTAAACCGAGCCATAAATATTTTTATAAAT
68626701 A
1 A
68626702 TTTATGGAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.39
Consensus pattern (34 bp):
AATTTTAAACCGAGCCATAAATATTTTTATAAAT
Found at i:68631762 original size:10 final size:9
Alignment explanation
Indices: 68631741--68631784 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
68631731 TAATAATAAA
*
68631741 AAAGAAAGG
1 AAAGAAAAG
68631750 AAAGGAAAAG
1 AAA-GAAAAG
68631760 AAAGAAAAGG
1 AAAGAAAA-G
68631770 AAAG-AAAG
1 AAAGAAAAG
68631778 AAAGAAA
1 AAAGAAA
68631785 CAGAGAAGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
8 5 0.16
9 13 0.42
10 13 0.42
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (9 bp):
AAAGAAAAG
Found at i:68632519 original size:24 final size:24
Alignment explanation
Indices: 68632492--68632539 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
68632482 ATTAAAATAG
68632492 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
68632516 ATTGAATTTATATTGATTGAATTT
1 ATTGAATTTATATTGATTGAATTT
68632540 GATATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 3 0.14
24 14 0.64
25 5 0.23
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:68633024 original size:24 final size:24
Alignment explanation
Indices: 68632978--68633024 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
68632968 AAATATGCAA
*
68632978 ATGAAATGCATGAATTATGTGTTC
1 ATGAAATGCATAAATTATGTGTTC
*
68633002 ATGAAATGGATAATATTAT-TGTT
1 ATGAAATGCATAA-ATTATGTGTT
68633025 AATTGATATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.40
Consensus pattern (24 bp):
ATGAAATGCATAAATTATGTGTTC
Found at i:68639935 original size:20 final size:19
Alignment explanation
Indices: 68639910--68639982 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 19
68639900 AACTATCCAA
68639910 AAAAATTATGAAAAAAATT
1 AAAAATTATGAAAAAAATT
* *
68639929 CAAAAATCATAAAAAAAATT
1 -AAAAATTATGAAAAAAATT
***
68639949 -AAAATTATTTCAAAAATT
1 AAAAATTATGAAAAAAATT
68639967 AGAAAATTA-GAAAAAA
1 A-AAAATTATGAAAAAA
68639983 TTAGAAAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
18 14 0.33
19 4 0.10
20 24 0.57
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (19 bp):
AAAAATTATGAAAAAAATT
Found at i:68639984 original size:10 final size:10
Alignment explanation
Indices: 68639960--68639993 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
68639950 AAATTATTTC
68639960 AAAAATTAG-
1 AAAAATTAGA
68639969 -AAAATTAGA
1 AAAAATTAGA
68639978 AAAAATTAGA
1 AAAAATTAGA
68639988 AAAAAT
1 AAAAAT
68639994 ATATAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.35
10 15 0.65
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (10 bp):
AAAAATTAGA
Found at i:68640194 original size:29 final size:30
Alignment explanation
Indices: 68640148--68640222 Score: 84
Period size: 31 Copynumber: 2.6 Consensus size: 30
68640138 ATATATATAT
68640148 AATTTT-T-ATATTTTTTTAATCTTT-AAA
1 AATTTTATAATATTTTTTTAATCTTTAAAA
* *
68640175 AATTTTATAATATTTTTTTATTTTTTACAAA
1 AATTTTATAATATTTTTTTAATCTTTA-AAA
* *
68640206 AATTTTAAAATAATTTT
1 AATTTTATAATATTTTT
68640223 AATAATGGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
27 6 0.15
28 1 0.03
29 15 0.38
31 18 0.45
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (30 bp):
AATTTTATAATATTTTTTTAATCTTTAAAA
Found at i:68640912 original size:28 final size:28
Alignment explanation
Indices: 68640880--68640953 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 28
68640870 AGAACTTTTT
68640880 TAAAATTTTTTGAATTTTTTAAAAA-ATA
1 TAAAA-TTTTTGAATTTTTTAAAAATATA
* *
68640908 TAAAA-TTTGGAA-TTTTTAAAAATTATT
1 TAAAATTTTTGAATTTTTTAAAAA-TATA
*
68640935 TTAAATTTTTGAATTTTTT
1 TAAAATTTTTGAATTTTTT
68640954 TATTAGAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 10 0.26
26 6 0.16
27 6 0.16
28 11 0.29
29 5 0.13
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (28 bp):
TAAAATTTTTGAATTTTTTAAAAATATA
Found at i:68641066 original size:17 final size:18
Alignment explanation
Indices: 68641033--68641067 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
68641023 TATTTGAATC
*
68641033 ATTTAAGTTATTAAAATT
1 ATTTAAATTATTAAAATT
68641051 ATTTAAATTA-TAAAATT
1 ATTTAAATTATTAAAATT
68641068 TAATTCGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
ATTTAAATTATTAAAATT
Found at i:68644958 original size:20 final size:19
Alignment explanation
Indices: 68644935--68644974 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
68644925 TATTTGCATG
*
68644935 CATTTTAATATATTTTTAAA
1 CATTATAATATA-TTTTAAA
*
68644955 CATTATATTATATTTTAAA
1 CATTATAATATATTTTAAA
68644974 C
1 C
68644975 TTAATGGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (19 bp):
CATTATAATATATTTTAAA
Found at i:68648640 original size:40 final size:40
Alignment explanation
Indices: 68648592--68648673 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
68648582 TTTCGCTGTG
68648592 TAAGAAAAATGTTTTCAAACCAGGATTTTTCCAACACCCC
1 TAAGAAAAATGTTTTCAAACCAGGATTTTTCCAACACCCC
68648632 TAAGAAAAATGTTTTCAAACCAGGATTTTTCCAACACCCC
1 TAAGAAAAATGTTTTCAAACCAGGATTTTTCCAACACCCC
68648672 TA
1 TA
68648674 GCCCTTTCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (40 bp):
TAAGAAAAATGTTTTCAAACCAGGATTTTTCCAACACCCC
Found at i:68652242 original size:17 final size:18
Alignment explanation
Indices: 68652209--68652243 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
68652199 TTATGTAGCC
68652209 TGCCCGTGTAGGCCCACA
1 TGCCCGTGTAGGCCCACA
68652227 TGCCCGTGTA-GCCCACA
1 TGCCCGTGTAGGCCCACA
68652244 CGGCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.17, C:0.40, G:0.26, T:0.17
Consensus pattern (18 bp):
TGCCCGTGTAGGCCCACA
Found at i:68663142 original size:40 final size:40
Alignment explanation
Indices: 68663097--68663176 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
68663087 TTTTTCCCTT
68663097 ATCTAGCATTAGCATCACATTGTTTTCTATGTTCGATTAC
1 ATCTAGCATTAGCATCACATTGTTTTCTATGTTCGATTAC
68663137 ATCTAGCATTAGCATCACATTGTTTTCTATGTTCGATTAC
1 ATCTAGCATTAGCATCACATTGTTTTCTATGTTCGATTAC
68663177 TTAGGTACTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.42
Consensus pattern (40 bp):
ATCTAGCATTAGCATCACATTGTTTTCTATGTTCGATTAC
Found at i:68667119 original size:24 final size:24
Alignment explanation
Indices: 68667087--68667133 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
68667077 AATATAAAAA
*
68667087 ATTAGATTA-TTAATATATAATTAC
1 ATTAAATTATTTAA-ATATAATTAC
68667111 ATTAAATTATTTAAATATAATTA
1 ATTAAATTATTTAAATATAATTA
68667134 GTATTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (24 bp):
ATTAAATTATTTAAATATAATTAC
Found at i:68673638 original size:24 final size:23
Alignment explanation
Indices: 68673594--68673656 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 23
68673584 AGGCTTATAT
*
68673594 TTTAAATATGTATATTTATAATAAAA
1 TTTAAA-AT-TATATTAATAAT-AAA
*
68673620 TTTAAAATTATATTAATAATTAA
1 TTTAAAATTATATTAATAATAAA
68673643 TTATAAAAATTATA
1 TT-T-AAAATTATA
68673657 ACTAAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 4 0.12
24 12 0.36
25 11 0.33
26 6 0.18
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
TTTAAAATTATATTAATAATAAA
Found at i:68675352 original size:21 final size:21
Alignment explanation
Indices: 68675313--68675353 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
68675303 CCCTGTCTTA
**
68675313 GGTCTCGAGACATGCAAACTG
1 GGTCTCGAGACATAAAAACTG
*
68675334 GGTCTTGAGACATAAAAACT
1 GGTCTCGAGACATAAAAACT
68675354 TCGAAGCTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (21 bp):
GGTCTCGAGACATAAAAACTG
Found at i:68677328 original size:12 final size:12
Alignment explanation
Indices: 68677307--68677346 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
68677297 TGGGTATGTT
*
68677307 GAGGATGAAGAA
1 GAGGAAGAAGAA
*
68677319 GAGGACGAAGAA
1 GAGGAAGAAGAA
*
68677331 GAGGAAGATGAA
1 GAGGAAGAAGAA
68677343 GAGG
1 GAGG
68677347 TTAATGAGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.47, C:0.03, G:0.45, T:0.05
Consensus pattern (12 bp):
GAGGAAGAAGAA
Found at i:68682028 original size:31 final size:29
Alignment explanation
Indices: 68681977--68682049 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 29
68681967 TACTATCATT
*
68681977 ATTTTTTAATTATTTAATAATATTTTAACAA
1 ATTTTTTAATTATGTAAT-A-ATTTTAACAA
* *
68682008 TTTTTTTAATTGATGT-ATAATTTTAATAA
1 ATTTTTTAATT-ATGTAATAATTTTAACAA
*
68682037 ATTTTTTATTTAT
1 ATTTTTTAATTAT
68682050 TATAAATCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
28 2 0.06
29 18 0.50
30 1 0.03
31 12 0.33
32 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (29 bp):
ATTTTTTAATTATGTAATAATTTTAACAA
Found at i:68684268 original size:20 final size:21
Alignment explanation
Indices: 68684219--68684270 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
68684209 TTATGCTACA
68684219 TCAA-TATTCTTATCCTAAATT
1 TCAAGTATT-TTATCCTAAATT
*
68684240 TCAAG-ATTTTATCCTGAATT
1 TCAAGTATTTTATCCTAAATT
*
68684260 T-TAGTATTTTA
1 TCAAGTATTTTA
68684271 ATTTGGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 2 0.07
20 18 0.67
21 7 0.26
ACGTcount: A:0.31, C:0.13, G:0.06, T:0.50
Consensus pattern (21 bp):
TCAAGTATTTTATCCTAAATT
Found at i:68698511 original size:19 final size:19
Alignment explanation
Indices: 68698487--68698537 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
68698477 ACAAAAAAAT
68698487 AATATATATAAAATTGTAA
1 AATATATATAAAATTGTAA
* *
68698506 AATATAT-TAAACTTTTTAA
1 AATATATATAAA-ATTGTAA
68698525 AATAT-TA-AAAATT
1 AATATATATAAAATT
68698538 TAATAAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
17 2 0.07
18 8 0.30
19 17 0.63
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
AATATATATAAAATTGTAA
Found at i:68698564 original size:11 final size:10
Alignment explanation
Indices: 68698522--68698574 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
68698512 TTAAACTTTT
68698522 TAAAATATTA
1 TAAAATATTA
68698532 -AAAAT-TTAA
1 TAAAATATT-A
68698541 TAAAAT-TTA
1 TAAAATATTA
68698550 -AAAATTATTA
1 TAAAA-TATTA
68698560 TAAAAATATTA
1 T-AAAATATTA
68698571 TAAA
1 TAAA
68698575 TGACTCAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
8 6 0.16
9 8 0.22
10 13 0.35
11 6 0.16
12 4 0.11
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
TAAAATATTA
Found at i:68698652 original size:20 final size:20
Alignment explanation
Indices: 68698627--68698664 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
68698617 ATTACAATAA
68698627 AAAATTTGTAAAAA-ATATGG
1 AAAATTT-TAAAAACATATGG
68698647 AAAATTTTAAAAACATAT
1 AAAATTTTAAAAACATAT
68698665 AATATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (20 bp):
AAAATTTTAAAAACATATGG
Found at i:68698728 original size:31 final size:30
Alignment explanation
Indices: 68698675--68698754 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 30
68698665 AATATTATTT
68698675 AAAATATTATTAAAA-TATAGAAAAGTGA-AA
1 AAAAT-TTATTAAAATTATAGAAAA-TGACAA
*
68698705 AAAATTTATTAAAAATTATAGAAAATTACAA
1 AAAATTTATT-AAAATTATAGAAAATGACAA
68698736 AAAATTTATTCAAAATTAT
1 AAAATTTATT-AAAATTAT
68698755 TCAATAAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
29 5 0.11
30 11 0.24
31 29 0.64
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.33
Consensus pattern (30 bp):
AAAATTTATTAAAATTATAGAAAATGACAA
Found at i:68698739 original size:21 final size:21
Alignment explanation
Indices: 68698715--68698801 Score: 52
Period size: 21 Copynumber: 4.1 Consensus size: 21
68698705 AAAATTTATT
68698715 AAAAATTATAGAAAATTACAA
1 AAAAATTATAGAAAATTACAA
* **
68698736 AAAATTTATTCAAAATTATTC-A
1 AAAAATTATAGAAAATTA--CAA
* * * **
68698758 ATAAATAACAGAAAATTTTAA
1 AAAAATTATAGAAAATTACAA
* *
68698779 AAAAATTATATAACATTA-AA
1 AAAAATTATAGAAAATTACAA
68698799 AAA
1 AAA
68698802 CACAACGATA
Statistics
Matches: 46, Mismatches: 17, Indels: 7
0.66 0.24 0.10
Matches are distributed among these distances:
20 5 0.11
21 28 0.61
22 12 0.26
23 1 0.02
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (21 bp):
AAAAATTATAGAAAATTACAA
Found at i:68699036 original size:15 final size:16
Alignment explanation
Indices: 68699016--68699056 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
68699006 AAATAGTTTT
68699016 TATATTTTTTTC-TTA
1 TATATTTTTTTCATTA
68699031 TATATTTATTTTTCATTA
1 TATA-TT-TTTTTCATTA
68699049 TA-ATTTTT
1 TATATTTTT
68699057 ACGTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 4 0.17
17 7 0.30
18 5 0.22
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (16 bp):
TATATTTTTTTCATTA
Found at i:68699044 original size:17 final size:17
Alignment explanation
Indices: 68699022--68699054 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
68699012 TTTTTATATT
68699022 TTTTTC-TTATATATTTA
1 TTTTTCATTATA-ATTTA
68699039 TTTTTCATTATAATTT
1 TTTTTCATTATAATTT
68699055 TTACGTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTCATTATAATTTA
Found at i:68699175 original size:17 final size:17
Alignment explanation
Indices: 68699136--68699176 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
68699126 CATTTTCTTT
*
68699136 TTTTTTTGTAATTCATA
1 TTTTTTTATAATTCATA
* *
68699153 TATTTTTATAATTTATA
1 TTTTTTTATAATTCATA
68699170 TTTTTTT
1 TTTTTTT
68699177 TATTTTTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (17 bp):
TTTTTTTATAATTCATA
Found at i:68699184 original size:8 final size:9
Alignment explanation
Indices: 68699168--68699192 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
68699158 TTATAATTTA
68699168 TATTTTTTT
1 TATTTTTTT
68699177 TATTTTTTT
1 TATTTTTTT
68699186 TATTTTT
1 TATTTTT
68699193 CATAATTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TATTTTTTT
Found at i:68699221 original size:32 final size:33
Alignment explanation
Indices: 68699153--68699232 Score: 92
Period size: 32 Copynumber: 2.4 Consensus size: 33
68699143 GTAATTCATA
* * *
68699153 TATTTTTATAATTTATATTTTTTTTATTTTTTT
1 TATTTTTATAATTTACATTATTTTCATTTTTTT
68699186 TATTTTTCATAATTTACA-TATTTTCA-TTTTTT
1 TATTTTT-ATAATTTACATTATTTTCATTTTTTT
*
68699218 TATTTTAAATAATTT
1 TATTTT-TATAATTT
68699233 TAATGCTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 19 0.46
33 13 0.32
34 9 0.22
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (33 bp):
TATTTTTATAATTTACATTATTTTCATTTTTTT
Found at i:68699344 original size:27 final size:27
Alignment explanation
Indices: 68699290--68699362 Score: 76
Period size: 28 Copynumber: 2.7 Consensus size: 27
68699280 TTGTAAGCCA
* * *
68699290 TAATACTTTTTATATTTTTTTTGCACTT
1 TAATA-TTTTTACAATTTTTTTGAACTT
*
68699318 TTATATATTTTACAATTTTTTT-AACTT
1 TAATAT-TTTTACAATTTTTTTGAACTT
*
68699345 TAATATTTTTATAATTTT
1 TAATATTTTTACAATTTT
68699363 AATATATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
26 11 0.29
27 10 0.26
28 17 0.45
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.64
Consensus pattern (27 bp):
TAATATTTTTACAATTTTTTTGAACTT
Found at i:68699352 original size:17 final size:17
Alignment explanation
Indices: 68699332--68699375 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
68699322 ATATTTTACA
68699332 ATTTTTTTAACTTTAAT
1 ATTTTTTTAACTTTAAT
* *
68699349 ATTTTTATAATTTTAAT
1 ATTTTTTTAACTTTAAT
68699366 ATATTTTTTA
1 AT-TTTTTTA
68699376 TGATTATCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 17 0.74
18 6 0.26
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTTTTTTAACTTTAAT
Found at i:68699375 original size:20 final size:20
Alignment explanation
Indices: 68699350--68699424 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
68699340 AACTTTAATA
68699350 TTTTTATAATTTTAATATAT
1 TTTTTATAATTTTAATATAT
*
68699370 TTTTTATGATTATCT-ATA-AT
1 TTTTTATAATT-T-TAATATAT
* * *
68699390 TTTTTGTAGTTTTTAT-TAT
1 TTTTTATAATTTTAATATAT
68699409 TTTTTAGTAATTTTAA
1 TTTTTA-TAATTTTAA
68699425 GTATGAAACA
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
18 1 0.02
19 10 0.23
20 27 0.63
21 4 0.09
22 1 0.02
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.65
Consensus pattern (20 bp):
TTTTTATAATTTTAATATAT
Found at i:68699422 original size:19 final size:18
Alignment explanation
Indices: 68699316--68699423 Score: 67
Period size: 19 Copynumber: 5.7 Consensus size: 18
68699306 TTTTTTGCAC
**
68699316 TTTTATATATTTTACAATT
1 TTTTATA-ATTTTATTATT
* *
68699335 TTTT-TAACTTTAATA-T
1 TTTTATAATTTTATTATT
68699351 TTTTATAATTTTAATATATT
1 TTTTATAATTTT-AT-TATT
* *
68699371 TTTTATGATTATCTATAATT
1 TTTTATAATT-T-TATTATT
* *
68699391 TTTTGTAGTTTTTATTATT
1 TTTTATA-ATTTTATTATT
68699410 TTTTAGTAATTTTA
1 TTTTA-TAATTTTA
68699424 AGTATGAAAC
Statistics
Matches: 68, Mismatches: 13, Indels: 16
0.70 0.13 0.16
Matches are distributed among these distances:
16 5 0.07
17 12 0.18
18 3 0.04
19 21 0.31
20 21 0.31
21 5 0.07
22 1 0.01
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.65
Consensus pattern (18 bp):
TTTTATAATTTTATTATT
Found at i:68710894 original size:26 final size:26
Alignment explanation
Indices: 68710858--68710967 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
68710848 TGATACAAAT
68710858 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
68710884 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
68710910 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
68710936 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
68710962 TGATAA
1 TGATAA
68710968 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:68712280 original size:28 final size:26
Alignment explanation
Indices: 68712238--68712308 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
68712228 AAAATTAGCT
* * * *
68712238 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTACG--TGCA
68712266 AAATTACTGTTATACCCCTACGTGCA
1 AAATTACTGTTATACCCCTACGTGCA
*
68712292 AAATTACCGTTATACCC
1 AAATTACTGTTATACCC
68712309 GTGGGGTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
26 19 0.50
28 19 0.50
ACGTcount: A:0.35, C:0.24, G:0.10, T:0.31
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTACGTGCA
Found at i:68715959 original size:20 final size:19
Alignment explanation
Indices: 68715907--68715960 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
68715897 ATAAATATTT
*
68715907 AAATATTTTAA-AAATATA
1 AAATATTTTAATAAATAAA
68715925 AAATGATTATT-ATAAATAAA
1 AAAT-ATT-TTAATAAATAAA
68715945 ATAATATTTTAATAAA
1 A-AATATTTTAATAAA
68715961 GGTTAGTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
18 4 0.13
19 6 0.20
20 17 0.57
21 3 0.10
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AAATATTTTAATAAATAAA
Found at i:68717823 original size:23 final size:23
Alignment explanation
Indices: 68717779--68717824 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
68717769 TACATTTTTA
* *
68717779 TAACTATTGGAAATAATGATTTG
1 TAACTACTGGAAATAATAATTTG
68717802 TAACTACTGGAAA-AATAAATTTG
1 TAACTACTGGAAATAAT-AATTTG
68717825 CATTACTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (23 bp):
TAACTACTGGAAATAATAATTTG
Found at i:68739479 original size:16 final size:16
Alignment explanation
Indices: 68739453--68739519 Score: 55
Period size: 16 Copynumber: 4.1 Consensus size: 16
68739443 AGATCTGGTA
68739453 CAAGCAAATACAAACCT
1 CAAG-AAATACAAACCT
68739470 CAAGAAATACAAACACT
1 CAAGAAATACAAAC-CT
* * ** *
68739487 TAGGACAGGA-AAACAT
1 CAAGA-AATACAAACCT
68739503 CAAGAAATACAAACCT
1 CAAGAAATACAAACCT
68739519 C
1 C
68739520 GTGCTCCAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 7
0.69 0.19 0.13
Matches are distributed among these distances:
15 2 0.05
16 20 0.54
17 13 0.35
18 2 0.05
ACGTcount: A:0.54, C:0.24, G:0.10, T:0.12
Consensus pattern (16 bp):
CAAGAAATACAAACCT
Found at i:68744265 original size:16 final size:16
Alignment explanation
Indices: 68744244--68744295 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
68744234 TTTGGTTCGC
68744244 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
68744260 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
68744276 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
68744292 TGTA
1 TGTA
68744296 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:68744381 original size:39 final size:43
Alignment explanation
Indices: 68744276--68744385 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
68744266 GGATTAGAGG
68744276 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
68744321 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
68744361 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
68744386 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:68748129 original size:408 final size:408
Alignment explanation
Indices: 68747374--68748189 Score: 1569
Period size: 408 Copynumber: 2.0 Consensus size: 408
68747364 ACTTGTGACG
*
68747374 TTTATAATGTGATATACCTTAAATCTGAGTGCATGATAGATTATGTATGCGCGATTCTTATACTT
1 TTTATAATGTGATATACCTTAAACCTGAGTGCATGATAGATTATGTATGCGCGATTCTTATACTT
68747439 TGATGTAAGTAAAAACTTGAGTTCAAATAGATAAGGAACTAAAAACTGATGCATTGGTATACGAC
66 TGATGTAAGTAAAAACTTGAGTTCAAATAGATAAGGAACTAAAAACTGATGCATTGGTATACGAC
*
68747504 TTTTGTAGTATATAACATTATTCACAATAGTGGAATTCATACTGCAATAAATGGGTGAATGGTAT
131 TTTTGTAGTATATAACATTATTCACAATAGTGGAATTCATACTACAATAAATGGGTGAATGGTAT
*
68747569 CCTCTCATTGGCATTATTTACTAGTTTGTTTTTTAGTGGTTTCGAGACAACAAATCGGATAAGTG
196 CCTCTCATTGGCATTATTTACTAGTTTATTTTTTAGTGGTTTCGAGACAACAAATCGGATAAGTG
68747634 AGTTCGTAAATATTATTATTTAATATTTACAAGCCAAATATAGCATTATATTGACTTTTGATTTG
261 AGTTCGTAAATATTATTATTTAATATTTACAAGCCAAATATAGCATTATATTGACTTTTGATTTG
*
68747699 ATAATTTTTGGTAAGTGAATGAAAATATAAGTACAAGTGGATTTTGAAAAATGAGGTTTCGGGAC
326 ATAATTTTTGGTAAGTGAATGAAAATAGAAGTACAAGTGGATTTTGAAAAATGAGGTTTCGGGAC
68747764 CTCATTTCTATAAACTTA
391 CTCATTTCTATAAACTTA
*
68747782 TTTATAATGTGATATACCTTAAACCTGAGTGCATGATAGATTATGTATGTGCGATTCTTATACTT
1 TTTATAATGTGATATACCTTAAACCTGAGTGCATGATAGATTATGTATGCGCGATTCTTATACTT
68747847 TGATGTAAGTAAAAACTTGAGTTCAAATAGATAAGGAACTAAAAACTGATGCATTGGTATACGAC
66 TGATGTAAGTAAAAACTTGAGTTCAAATAGATAAGGAACTAAAAACTGATGCATTGGTATACGAC
68747912 TTTTGTAGTATATAACATTATTCACAATAGTGGAATTCATACTACAATAAATGGGTGAATGGTAT
131 TTTTGTAGTATATAACATTATTCACAATAGTGGAATTCATACTACAATAAATGGGTGAATGGTAT
*
68747977 CCTCTCATTGGCATTATTTACTAGTTTATTTTTTAGTGGTTTCGAGACAACAAATTGGATAAGTG
196 CCTCTCATTGGCATTATTTACTAGTTTATTTTTTAGTGGTTTCGAGACAACAAATCGGATAAGTG
*
68748042 AGTTCGTAAATATTATTATTTAATATTTATAAGCCAAATATAGCATTATATTGACTTTTGATTTG
261 AGTTCGTAAATATTATTATTTAATATTTACAAGCCAAATATAGCATTATATTGACTTTTGATTTG
68748107 ATAATTTTTGGTAAGTGAATGAAAATAGAAGTACAAGTGGATTTTGAAAAATGAGGTTTCGGGAC
326 ATAATTTTTGGTAAGTGAATGAAAATAGAAGTACAAGTGGATTTTGAAAAATGAGGTTTCGGGAC
68748172 CTCATTTCTATAAACTTA
391 CTCATTTCTATAAACTTA
68748190 GCCCGTAAAT
Statistics
Matches: 401, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
408 401 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.37
Consensus pattern (408 bp):
TTTATAATGTGATATACCTTAAACCTGAGTGCATGATAGATTATGTATGCGCGATTCTTATACTT
TGATGTAAGTAAAAACTTGAGTTCAAATAGATAAGGAACTAAAAACTGATGCATTGGTATACGAC
TTTTGTAGTATATAACATTATTCACAATAGTGGAATTCATACTACAATAAATGGGTGAATGGTAT
CCTCTCATTGGCATTATTTACTAGTTTATTTTTTAGTGGTTTCGAGACAACAAATCGGATAAGTG
AGTTCGTAAATATTATTATTTAATATTTACAAGCCAAATATAGCATTATATTGACTTTTGATTTG
ATAATTTTTGGTAAGTGAATGAAAATAGAAGTACAAGTGGATTTTGAAAAATGAGGTTTCGGGAC
CTCATTTCTATAAACTTA
Found at i:68748504 original size:39 final size:39
Alignment explanation
Indices: 68748450--68748531 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
68748440 ATCATCTTCC
68748450 CCATTTCTCCTTCCACCAAAATTGAAATGGAATGAAACA
1 CCATTTCTCCTTCCACCAAAATTGAAATGGAATGAAACA
68748489 CCATTTCTCCTTCCACCAAAATTGAAATGGAATGAAACA
1 CCATTTCTCCTTCCACCAAAATTGAAATGGAATGAAACA
68748528 CCAT
1 CCAT
68748532 AGCTAAAGCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.38, C:0.27, G:0.10, T:0.26
Consensus pattern (39 bp):
CCATTTCTCCTTCCACCAAAATTGAAATGGAATGAAACA
Found at i:68751251 original size:40 final size:41
Alignment explanation
Indices: 68751158--68751274 Score: 134
Period size: 40 Copynumber: 2.9 Consensus size: 41
68751148 ATGAAATGGC
* * * * *
68751158 TATATGAGACGATTATACGAAATGATTATAT-AAAAT-GAA
1 TATATGAAATGATTATATGAATTGATTATATGGAAATAGAA
*
68751197 TATATGAATTGATTATATGAATTGATTATATGGAAATAG-A
1 TATATGAAATGATTATATGAATTGATTATATGGAAATAGAA
*
68751237 TATACT-AAATGATTATATGAATTGGTTATATGGAAATA
1 TATA-TGAAATGATTATATGAATTGATTATATGGAAATA
68751275 ATTATAAAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
39 26 0.39
40 39 0.58
41 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.16, T:0.37
Consensus pattern (41 bp):
TATATGAAATGATTATATGAATTGATTATATGGAAATAGAA
Found at i:68751253 original size:13 final size:13
Alignment explanation
Indices: 68751146--68751305 Score: 121
Period size: 13 Copynumber: 12.3 Consensus size: 13
68751136 TAAATGTGTA
**
68751146 ATATGAAATGGCT
1 ATATGAAATGATT
* *
68751159 ATATGAGACGATT
1 ATATGAAATGATT
*
68751172 ATACGAAATGATT
1 ATATGAAATGATT
* *
68751185 ATATAAAATGAAT
1 ATATGAAATGATT
*
68751198 ATATGAATTGATT
1 ATATGAAATGATT
*
68751211 ATATGAATTGATT
1 ATATGAAATGATT
68751224 ATATGGAAATAGA-T
1 ATAT-GAAAT-GATT
68751238 ATACT-AAATGATT
1 ATA-TGAAATGATT
* *
68751251 ATATGAATTGGTT
1 ATATGAAATGATT
*
68751264 ATATGGAAATAATT
1 ATAT-GAAATGATT
*
68751278 ATA--AAATGTTT
1 ATATGAAATGATT
* *
68751289 ATACGAAATGTTT
1 ATATGAAATGATT
68751302 ATAT
1 ATAT
68751306 AGATAGATAT
Statistics
Matches: 117, Mismatches: 22, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
11 9 0.08
12 3 0.03
13 85 0.73
14 17 0.15
15 3 0.03
ACGTcount: A:0.44, C:0.03, G:0.16, T:0.38
Consensus pattern (13 bp):
ATATGAAATGATT
Found at i:68753335 original size:16 final size:16
Alignment explanation
Indices: 68753304--68753347 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
68753294 TGTTAATTTC
68753304 AATGT-AAAGGACTAA
1 AATGTGAAAGGACTAA
68753319 AATGTGAAAGTGA-TAA
1 AATGTGAAAG-GACTAA
68753335 AAT-TGAAAGGACT
1 AATGTGAAAGGACT
68753348 TGGTGTGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.08
15 12 0.46
16 10 0.38
17 2 0.08
ACGTcount: A:0.50, C:0.05, G:0.23, T:0.23
Consensus pattern (16 bp):
AATGTGAAAGGACTAA
Found at i:68753823 original size:39 final size:39
Alignment explanation
Indices: 68753769--68753977 Score: 301
Period size: 39 Copynumber: 5.4 Consensus size: 39
68753759 AATGGAATAT
68753769 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
*
68753808 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* * * *
68753847 TGGTTATACTGAATGCTTACTCAAATGAGCATTATCTAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* * * *
68753886 TGGTTATACTGAATGCTTGCTCAAACGAGTAATATTCAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* *
68753925 TGATTATACTAAATGCTTGCTCAAACGAGCAGTATCCAC
1 TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
* *
68753964 TGGTTATATTGAAT
1 TGATTATACTGAAT
68753978 AAGATTTTCT
Statistics
Matches: 150, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 150 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (39 bp):
TGATTATACTGAATGCTTGCTCAAACGAGCATTATCCAC
Found at i:68754240 original size:17 final size:17
Alignment explanation
Indices: 68754220--68754281 Score: 106
Period size: 17 Copynumber: 3.6 Consensus size: 17
68754210 CAATGATATG
68754220 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
68754237 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
68754254 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
68754272 CAATCTTAGA
1 CAATCTTAGA
68754282 AGATATGATT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
17 32 0.74
18 11 0.26
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:68754603 original size:12 final size:11
Alignment explanation
Indices: 68754588--68754621 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
68754578 TATTTTTAAT
68754588 TTATTATATATA
1 TTATT-TATATA
68754600 TTATTTATTATA
1 TTATTTA-TATA
68754612 TTATTTATAT
1 TTATTTATAT
68754622 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:68754613 original size:21 final size:21
Alignment explanation
Indices: 68754589--68754697 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
68754579 ATTTTTAATT
68754589 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
68754610 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
68754628 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
68754647 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
68754670 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
68754691 TATTATA
1 TATTATA
68754698 CATTATTTTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:68754619 original size:16 final size:16
Alignment explanation
Indices: 68754586--68754616 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
68754576 CTTATTTTTA
68754586 ATTTATTATATATATT
1 ATTTATTATATATATT
68754602 ATTTATTATAT-TATT
1 ATTTATTATATATATT
68754617 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:68754654 original size:7 final size:7
Alignment explanation
Indices: 68754637--68754743 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
68754627 AAATTTGTAA
68754637 ATTAT-T
1 ATTATAT
68754643 ATTATAT
1 ATTATAT
68754650 ATTATAT
1 ATTATAT
68754657 -TT-TA-
1 ATTATAT
68754661 ACTTATAT
1 A-TTATAT
68754669 ATCTTATAT
1 A--TTATAT
*
68754678 ATTTATTT
1 A-TTATAT
68754686 ATT-TAT
1 ATTATAT
*
68754692 ATTATAC
1 ATTATAT
68754699 ATTAT-T
1 ATTATAT
* *
68754705 -TTAAAA
1 ATTATAT
*
68754711 ACTTACAT
1 A-TTATAT
*
68754719 -TTTTAT
1 ATTATAT
68754725 ATTATAT
1 ATTATAT
*
68754732 ATTATAA
1 ATTATAT
68754739 ATTAT
1 ATTAT
68754744 TTCATTTATT
Statistics
Matches: 77, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 35 0.45
8 11 0.14
9 8 0.10
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:68760189 original size:9 final size:9
Alignment explanation
Indices: 68760175--68760227 Score: 52
Period size: 10 Copynumber: 5.6 Consensus size: 9
68760165 TTCTATTTTT
68760175 AAAAAAAAG
1 AAAAAAAAG
*
68760184 AAAAAAAATA
1 AAAAAAAA-G
*
68760194 AAAAAAATAA
1 AAAAAAA-AG
68760204 AAAAATAAAG
1 AAAAA-AAAG
*
68760214 AGAAAAAAG
1 AAAAAAAAG
68760223 AAAAA
1 AAAAA
68760228 TATGGAGAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
9 16 0.43
10 18 0.49
11 3 0.08
ACGTcount: A:0.87, C:0.00, G:0.08, T:0.06
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:68760198 original size:17 final size:17
Alignment explanation
Indices: 68760174--68760212 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
68760164 CTTCTATTTT
*
68760174 TAAAAAAAAGAAAAAAAA
1 TAAAAAAAA-TAAAAAAA
68760192 TAAAAAAAATAAAAAAA
1 TAAAAAAAATAAAAAAA
68760209 TAAA
1 TAAA
68760213 GAGAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (17 bp):
TAAAAAAAATAAAAAAA
Found at i:68761251 original size:44 final size:44
Alignment explanation
Indices: 68761107--68761286 Score: 161
Period size: 44 Copynumber: 4.1 Consensus size: 44
68761097 CAAAGAAACA
* *
68761107 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * ** * * * * **
68761151 AGATCTGACATTCCTACGCTCTCT-GCGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTG-TTTATAGGGAA-CAGATCGAAGATAGC
*
68761196 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
*
68761239 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAATATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
68761283 AGAT
1 AGAT
68761287 CTAACCTTCA
Statistics
Matches: 106, Mismatches: 22, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
42 2 0.02
43 16 0.15
44 70 0.66
45 17 0.16
46 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:68761489 original size:119 final size:119
Alignment explanation
Indices: 68761275--68761871 Score: 1086
Period size: 119 Copynumber: 5.0 Consensus size: 119
68761265 GAACAGATCG
68761275 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
68761340 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* *
68761394 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
1 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
68761459 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
68761513 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
68761578 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
*
68761632 AATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
*
68761697 TGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* * *
68761751 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
1 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
* * * * *
68761816 TGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
68761870 AA
1 AA
68761872 CAGACTCAAG
Statistics
Matches: 462, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
119 462 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (119 bp):
AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
Found at i:68761900 original size:83 final size:83
Alignment explanation
Indices: 68761795--68762208 Score: 720
Period size: 83 Copynumber: 5.0 Consensus size: 83
68761785 GAAGCAGATC
68761795 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
68761860 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
68761878 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATAGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
68761943 AATCTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
68761961 CAAGATGCTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
68762026 AATATTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
68762044 CAAGATGGTTTGGCATCCATGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
68762109 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
68762127 CAAGATAGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
68762192 AAATGTTCTCAAACAGA
65 AAATGTTCTCAAACAGA
68762209 TGATTTGACA
Statistics
Matches: 315, Mismatches: 15, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
83 249 0.79
84 66 0.21
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:68762527 original size:17 final size:17
Alignment explanation
Indices: 68762507--68762692 Score: 318
Period size: 17 Copynumber: 10.6 Consensus size: 17
68762497 CAATGATATG
68762507 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
68762524 CAATCTTAGATATGATTA
1 CAATCTTAGATATGA-TA
68762542 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
68762559 CAATCTTAGATATGATTA
1 CAATCTTAGATATGA-TA
68762577 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
68762594 CAATCTTAGATATGATTA
1 CAATCTTAGATATGA-TA
68762612 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
68762629 CAATCTTAGATATGATTA
1 CAATCTTAGATATGA-TA
68762647 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
68762664 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
68762683 CAATCTTAGA
1 CAATCTTAGA
68762693 AGATATGATT
Statistics
Matches: 163, Mismatches: 0, Indels: 10
0.94 0.00 0.06
Matches are distributed among these distances:
17 82 0.50
18 68 0.42
19 13 0.08
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:68762547 original size:35 final size:35
Alignment explanation
Indices: 68762507--68762692 Score: 363
Period size: 35 Copynumber: 5.3 Consensus size: 35
68762497 CAATGATATG
68762507 CAATCTTAGATATGATACAATCTTAGATATGATTA
1 CAATCTTAGATATGATACAATCTTAGATATGATTA
68762542 CAATCTTAGATATGATACAATCTTAGATATGATTA
1 CAATCTTAGATATGATACAATCTTAGATATGATTA
68762577 CAATCTTAGATATGATACAATCTTAGATATGATTA
1 CAATCTTAGATATGATACAATCTTAGATATGATTA
68762612 CAATCTTAGATATGATACAATCTTAGATATGATTA
1 CAATCTTAGATATGATACAATCTTAGATATGATTA
68762647 CAATCTTAGATATGATACAATCTTAGATATGATATA
1 CAATCTTAGATATGATACAATCTTAGATATGAT-TA
68762683 CAATCTTAGA
1 CAATCTTAGA
68762693 AGATATGATT
Statistics
Matches: 150, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
35 138 0.92
36 12 0.08
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATACAATCTTAGATATGATTA
Found at i:68763012 original size:12 final size:11
Alignment explanation
Indices: 68762997--68763030 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
68762987 TATTTTTAAT
68762997 TTATTATATATA
1 TTATT-TATATA
68763009 TTATTTATTATA
1 TTATTTA-TATA
68763021 TTATTTATAT
1 TTATTTATAT
68763031 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:68763022 original size:21 final size:21
Alignment explanation
Indices: 68762998--68763106 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
68762988 ATTTTTAATT
68762998 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
68763019 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
68763037 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
68763056 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
68763079 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
68763100 TATTATA
1 TATTATA
68763107 CATTATTTTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:68763028 original size:16 final size:16
Alignment explanation
Indices: 68762995--68763025 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
68762985 CTTATTTTTA
68762995 ATTTATTATATATATT
1 ATTTATTATATATATT
68763011 ATTTATTATAT-TATT
1 ATTTATTATATATATT
68763026 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:68763063 original size:7 final size:7
Alignment explanation
Indices: 68763046--68763152 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
68763036 AAATTTGTAA
68763046 ATTAT-T
1 ATTATAT
68763052 ATTATAT
1 ATTATAT
68763059 ATTATAT
1 ATTATAT
68763066 -TT-TA-
1 ATTATAT
68763070 ACTTATAT
1 A-TTATAT
68763078 ATCTTATAT
1 A--TTATAT
*
68763087 ATTTATTT
1 A-TTATAT
68763095 ATT-TAT
1 ATTATAT
*
68763101 ATTATAC
1 ATTATAT
68763108 ATTAT-T
1 ATTATAT
* *
68763114 -TTAAAA
1 ATTATAT
*
68763120 ACTTACAT
1 A-TTATAT
*
68763128 -TTTTAT
1 ATTATAT
68763134 ATTATAT
1 ATTATAT
*
68763141 ATTATAA
1 ATTATAT
68763148 ATTAT
1 ATTAT
68763153 TTCATTTATT
Statistics
Matches: 77, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 35 0.45
8 11 0.14
9 8 0.10
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:68766136 original size:16 final size:15
Alignment explanation
Indices: 68766115--68766153 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
68766105 AATTGGGTTA
*
68766115 AAAAATTATTTAATT
1 AAAAATTAATTAATT
68766130 GAAAAATTAATTAATT
1 -AAAAATTAATTAATT
68766146 -AAAATTAA
1 AAAAATTAA
68766154 ATCAATAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.36
16 14 0.64
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
AAAAATTAATTAATT
Found at i:68770506 original size:24 final size:25
Alignment explanation
Indices: 68770476--68770536 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 25
68770466 ACGATAGTTC
*
68770476 CTTCTTTTTCATTTTTAT-TTCTTT
1 CTTCTTTTTCATTTCTATCTTCTTT
* *
68770500 CTTCTTTGTCGTTTCTATCTTCTTT
1 CTTCTTTTTCATTTCTATCTTCTTT
*
68770525 -TTCGTTTT-ATTT
1 CTTCTTTTTCATTT
68770537 ATTTTCCCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
23 3 0.10
24 21 0.70
25 6 0.20
ACGTcount: A:0.07, C:0.18, G:0.05, T:0.70
Consensus pattern (25 bp):
CTTCTTTTTCATTTCTATCTTCTTT
Found at i:68770520 original size:18 final size:18
Alignment explanation
Indices: 68770493--68770531 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
68770483 TTCATTTTTA
*
68770493 TTTCTTTCTTCTTTGTCG
1 TTTCTATCTTCTTTGTCG
*
68770511 TTTCTATCTTCTTTTTCG
1 TTTCTATCTTCTTTGTCG
68770529 TTT
1 TTT
68770532 TATTTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.03, C:0.21, G:0.08, T:0.69
Consensus pattern (18 bp):
TTTCTATCTTCTTTGTCG
Found at i:68771245 original size:62 final size:62
Alignment explanation
Indices: 68771126--68771245 Score: 159
Period size: 62 Copynumber: 1.9 Consensus size: 62
68771116 TGTCTAGGCG
* * ** * * *
68771126 TGTAGCTCACTGTTTGTGGTACAATATCACACGGCCAGGGATACGGGCGTGTGCCCAGTCCA
1 TGTAGCTCACTGTTTGTGGTACAAAACCACACAACCAGGGACACGGGCATGTACCCAGTCCA
* *
68771188 TGTAGCTCACTGTTTTTGGTACAAAACCACACAACCAGGGACATGGGCATGTACCCAG
1 TGTAGCTCACTGTTTGTGGTACAAAACCACACAACCAGGGACACGGGCATGTACCCAG
68771246 GCTGTGTGAG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 49 1.00
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (62 bp):
TGTAGCTCACTGTTTGTGGTACAAAACCACACAACCAGGGACACGGGCATGTACCCAGTCCA
Found at i:68779690 original size:46 final size:46
Alignment explanation
Indices: 68779631--68779721 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
68779621 TATTACTCTC
*
68779631 TCTCTATCCACTTTTTTTCCCTTCTCTTTTCTTTTTCGGTTCTTTT
1 TCTCTATCCACTTTTTTTCCCTTCCCTTTTCTTTTTCGGTTCTTTT
*
68779677 TCTCTCTCCACTTTTTTTCCCTTCCCTTTTCTTTTTCGGTTCTTT
1 TCTCTATCCACTTTTTTTCCCTTCCCTTTTCTTTTTCGGTTCTTT
68779722 CATTCTCATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.03, C:0.31, G:0.04, T:0.62
Consensus pattern (46 bp):
TCTCTATCCACTTTTTTTCCCTTCCCTTTTCTTTTTCGGTTCTTTT
Found at i:68782320 original size:34 final size:33
Alignment explanation
Indices: 68782254--68782327 Score: 80
Period size: 34 Copynumber: 2.3 Consensus size: 33
68782244 AATAGATTTA
* * **
68782254 AATAATAT-TCAAATTCGTTAATATTATGATAT
1 AATAATATATCAAATTAGTTAATACTAAAATAT
*
68782286 ATATAATATATCAAATTAGTTTATACTAAAATAT
1 A-ATAATATATCAAATTAGTTAATACTAAAATAT
68782320 AA-AATATA
1 AATAATATA
68782328 ATTCATTGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
32 7 0.20
33 8 0.23
34 20 0.57
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (33 bp):
AATAATATATCAAATTAGTTAATACTAAAATAT
Found at i:68782432 original size:20 final size:20
Alignment explanation
Indices: 68782407--68782452 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
68782397 ATAAATTGTT
*
68782407 TATAAAACTTAATTTAAATA
1 TATAAAACATAATTTAAATA
* *
68782427 TATAAAGCATATTTTAAATA
1 TATAAAACATAATTTAAATA
68782447 T-TAAAA
1 TATAAAA
68782453 TAACGTACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.39
Consensus pattern (20 bp):
TATAAAACATAATTTAAATA
Found at i:68783234 original size:10 final size:10
Alignment explanation
Indices: 68783207--68783236 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
68783197 TGAATTTTTT
68783207 TATTTTTTAA
1 TATTTTTTAA
68783217 -ATTTTTTAA
1 TATTTTTTAA
68783226 TATTTTTTAA
1 TATTTTTTAA
68783236 T
1 T
68783237 TAGATCCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TATTTTTTAA
Found at i:68784399 original size:50 final size:50
Alignment explanation
Indices: 68784320--68784534 Score: 263
Period size: 49 Copynumber: 4.3 Consensus size: 50
68784310 ACGTATGGTA
* * * *
68784320 ACTACACATGCGACC-AATTATCTGGTACACGTAGTGGCCTGCACTTAGT
1 ACTACACACGTGACCTAATTATCTGGTACACATAGTAGCCTGCACTTAGT
** * *
68784369 ACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGT
1 ACTACACACGTGACCTAATTATCTGGTACACATAGTAGCCTGCACTTAGT
** * **
68784419 ACTACACACGTGATCGAAATTATCGGGTATGCATAGTAGCCTGCACTTAGT
1 ACTACACACGTGA-CCTAATTATCTGGTACACATAGTAGCCTGCACTTAGT
* * *
68784470 ACTACACATGCGACC-AATTATCCGGTACACATAGTAGCCTGCACTTAGT
1 ACTACACACGTGACCTAATTATCTGGTACACATAGTAGCCTGCACTTAGT
68784519 ACTACACACGTGACCT
1 ACTACACACGTGACCT
68784535 CACAATAGAT
Statistics
Matches: 140, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 57 0.41
50 44 0.31
51 39 0.28
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
ACTACACACGTGACCTAATTATCTGGTACACATAGTAGCCTGCACTTAGT
Found at i:68784523 original size:100 final size:101
Alignment explanation
Indices: 68784351--68784531 Score: 283
Period size: 100 Copynumber: 1.8 Consensus size: 101
68784341 CTGGTACACG
* * * *
68784351 TAGTGGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACATAGTAGCCTGCACTT
68784416 AGTACTACACACGTGATCGAAATTATCGGGTATGCA
66 AGTACTACACACGTGATCGAAATTATCGGGTATGCA
* ** *
68784452 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACATAGTAGCCTGCACTT
68784516 AGTACTACACACGTGA
66 AGTACTACACACGTGA
68784532 CCTCACAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 42 0.58
101 30 0.42
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACATAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAATTATCGGGTATGCA
Found at i:68796896 original size:48 final size:48
Alignment explanation
Indices: 68796825--68796919 Score: 190
Period size: 48 Copynumber: 2.0 Consensus size: 48
68796815 GTTGGACCAT
68796825 TGGTGGGGGTGCCTTCAACCTCATGAAAGTTCAGATCCATTTATATAA
1 TGGTGGGGGTGCCTTCAACCTCATGAAAGTTCAGATCCATTTATATAA
68796873 TGGTGGGGGTGCCTTCAACCTCATGAAAGTTCAGATCCATTTATATA
1 TGGTGGGGGTGCCTTCAACCTCATGAAAGTTCAGATCCATTTATATA
68796920 TAAAGATTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (48 bp):
TGGTGGGGGTGCCTTCAACCTCATGAAAGTTCAGATCCATTTATATAA
Found at i:68797642 original size:27 final size:27
Alignment explanation
Indices: 68797600--68797667 Score: 86
Period size: 26 Copynumber: 2.6 Consensus size: 27
68797590 ATAATTTTAC
* * *
68797600 ATATTTATTTTTTAATTTTATTAAATA
1 ATATATATTTTATAATTTCATTAAATA
68797627 ATATATATTTTATAA-TTCATTAAATA
1 ATATATATTTTATAATTTCATTAAATA
*
68797653 ATATA-GTTTTATAAT
1 ATATATATTTTATAAT
68797668 CTCAAAAAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 8 0.22
26 15 0.42
27 13 0.36
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (27 bp):
ATATATATTTTATAATTTCATTAAATA
Found at i:68805425 original size:19 final size:18
Alignment explanation
Indices: 68805401--68805447 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
68805391 ATATATATTT
68805401 TATTTTTTTAATTTTAAAA
1 TATTTTTTT-ATTTTAAAA
*
68805420 TATTTTTATT-TTTTTAAA
1 TATTTTT-TTATTTTAAAA
*
68805438 TAATTTTTTA
1 TATTTTTTTA
68805448 GTATTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 2 0.08
18 13 0.54
19 7 0.29
20 2 0.08
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTTTTTTATTTTAAAA
Found at i:68812105 original size:33 final size:33
Alignment explanation
Indices: 68812042--68812107 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
68812032 GCAATAATTT
** *
68812042 TAATTTTTTTTATAACATTTACTAAGTTTTATA
1 TAATTTTTTTTATAACATTTAAAAACTTTTATA
*
68812075 TAATTTTTTTTATAA-TTTTCAAAAACTTTTATA
1 TAATTTTTTTTATAACATTT-AAAAACTTTTATA
68812108 ATGTTTTAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 3 0.11
33 25 0.89
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.58
Consensus pattern (33 bp):
TAATTTTTTTTATAACATTTAAAAACTTTTATA
Found at i:68812430 original size:19 final size:19
Alignment explanation
Indices: 68812403--68812450 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
68812393 TTTTCTTATA
* *
68812403 TATAATTTTTACAACTTTT
1 TATAATTTTAACAAATTTT
* *
68812422 TATACTTTTAATAAATTTT
1 TATAATTTTAACAAATTTT
68812441 TATAGATTTT
1 TATA-ATTTT
68812451 TTCATCATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.58
Consensus pattern (19 bp):
TATAATTTTAACAAATTTT
Found at i:68812586 original size:11 final size:10
Alignment explanation
Indices: 68812403--68812598 Score: 72
Period size: 10 Copynumber: 20.0 Consensus size: 10
68812393 TTTTCTTATA
68812403 TATAA-TTTT
1 TATAATTTTT
* *
68812412 TACAACTTTT
1 TATAATTTTT
*
68812422 TAT-ACTTTT
1 TATAATTTTT
* *
68812431 AATAAATTTT
1 TATAATTTTT
68812441 TATAGATTTTT
1 TATA-ATTTTT
*
68812452 TCATCATTTTAAT
1 T-ATAATTTT--T
* * *
68812465 TATTATTATA
1 TATAATTTTT
*
68812475 TATAATTTTC
1 TATAATTTTT
*
68812485 AATAA--TTT
1 TATAATTTTT
*
68812493 T-TAATGTTT
1 TATAATTTTT
68812502 TATAATATTTGT
1 TATAAT-TTT-T
*
68812514 T-TAA-TATT
1 TATAATTTTT
68812522 T-TAATTTTT
1 TATAATTTTT
* *
68812531 T-GAAGTTTT
1 TATAATTTTT
68812540 TATAATTTTT
1 TATAATTTTT
*
68812550 TA-AA-ATTT
1 TATAATTTTT
* *
68812558 TATGATATTT
1 TATAATTTTT
*
68812568 AATAATTTTT
1 TATAATTTTT
*
68812578 TATACATTTTC
1 TATA-ATTTTT
68812589 TATAATTTTT
1 TATAATTTTT
68812599 AAAAAATATA
Statistics
Matches: 140, Mismatches: 31, Indels: 31
0.69 0.15 0.15
Matches are distributed among these distances:
7 3 0.02
8 12 0.09
9 32 0.23
10 56 0.40
11 25 0.18
12 10 0.07
13 2 0.01
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.60
Consensus pattern (10 bp):
TATAATTTTT
Found at i:68812721 original size:17 final size:14
Alignment explanation
Indices: 68812706--68812739 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
68812696 TAATTTTTAA
68812706 AATATTTTAATATTT
1 AATA-TTTAATATTT
68812721 AATATTTAATATTTT
1 AATATTTAATA-TTT
68812736 AATA
1 AATA
68812740 ATTTTTGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
AATATTTAATATTT
Found at i:68812723 original size:7 final size:8
Alignment explanation
Indices: 68812706--68812744 Score: 55
Period size: 7 Copynumber: 5.0 Consensus size: 8
68812696 TAATTTTTAA
68812706 AATATTTT
1 AATATTTT
68812714 AATA-TTT
1 AATATTTT
68812721 AATA-TTT
1 AATATTTT
68812728 AATATTTT
1 AATATTTT
68812736 AATAATTTT
1 AAT-ATTTT
68812745 TGAGAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 14 0.48
8 10 0.34
9 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
AATATTTT
Found at i:68812744 original size:31 final size:31
Alignment explanation
Indices: 68812642--68812744 Score: 79
Period size: 31 Copynumber: 3.3 Consensus size: 31
68812632 TAAAATTTTA
* *
68812642 TAATAATTATAATAATTTAATATTT--CATTT
1 TAATAATTTTAAT-ATTTAATATTTAATATTT
* * * *
68812672 TAATTCATTTTATATATTT-TTCTATAAT-TTT
1 TAA-TAATTTTA-ATATTTAATATTTAATATTT
*
68812703 TAAAATATTTTAATATTTAATATTTAATATTT
1 TAATA-ATTTTAATATTTAATATTTAATATTT
68812735 TAATAATTTT
1 TAATAATTTT
68812745 TGAGAATTTT
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
30 12 0.22
31 33 0.61
32 9 0.17
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (31 bp):
TAATAATTTTAATATTTAATATTTAATATTT
Found at i:68813067 original size:32 final size:32
Alignment explanation
Indices: 68813031--68813094 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
68813021 AAGGGCTTTT
68813031 TTTTAATACTTTAGCCAAAATTTATATAAAAA
1 TTTTAATACTTTAGCCAAAATTTATATAAAAA
68813063 TTTTAATACTTTAGCCAAAATTTATATAAAAA
1 TTTTAATACTTTAGCCAAAATTTATATAAAAA
68813095 AACTAATAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (32 bp):
TTTTAATACTTTAGCCAAAATTTATATAAAAA
Found at i:68813102 original size:32 final size:32
Alignment explanation
Indices: 68813034--68813102 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
68813024 GGCTTTTTTT
***
68813034 TAATACTTTAGCCAAAATTTATATAAAAATTT
1 TAATACTTTAGCCAAAATTTATATAAAAAAAC
68813066 TAATACTTTAGCCAAAATTTATATAAAAAAAC
1 TAATACTTTAGCCAAAATTTATATAAAAAAAC
68813098 TAATA
1 TAATA
68813103 AGGCTTTTGC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.36
Consensus pattern (32 bp):
TAATACTTTAGCCAAAATTTATATAAAAAAAC
Found at i:68813689 original size:11 final size:11
Alignment explanation
Indices: 68813656--68813703 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
68813646 GAGGCGCGAC
*
68813656 ATAATATTTTA
1 ATAATATTTTT
68813667 ATAATACTTTTT
1 ATAATA-TTTTT
*
68813679 TTAATATTTTT
1 ATAATATTTTT
* *
68813690 ATTATATTATT
1 ATAATATTTTT
68813701 ATA
1 ATA
68813704 TTTAAAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
11 21 0.70
12 9 0.30
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (11 bp):
ATAATATTTTT
Found at i:68813828 original size:6 final size:6
Alignment explanation
Indices: 68813817--68813869 Score: 61
Period size: 6 Copynumber: 8.2 Consensus size: 6
68813807 GAGCAAAGAG
*
68813817 AGAAAA AGAAAAA AGAAAA AGAAAA AGAAAGA AGAAAGAA AGAAGA AGAAAA
1 AGAAAA AG-AAAA AGAAAA AGAAAA AGAAA-A AG-AA-AA AGAAAA AGAAAA
68813869 A
1 A
68813870 ATTAGTAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
6 24 0.59
7 11 0.27
8 5 0.12
9 1 0.02
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:68813831 original size:7 final size:7
Alignment explanation
Indices: 68813819--68813870 Score: 56
Period size: 7 Copynumber: 7.7 Consensus size: 7
68813809 GCAAAGAGAG
68813819 AAAAAGA
1 AAAAAGA
68813826 AAAAAG-
1 AAAAAGA
68813832 AAAAAG-
1 AAAAAGA
68813838 AAAAAGA
1 AAAAAGA
*
68813845 AAGAAGA
1 AAAAAGA
68813852 AAGAAAG-
1 AA-AAAGA
*
68813859 AAGAAGA
1 AAAAAGA
68813866 AAAAA
1 AAAAA
68813871 TTAGTAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
6 15 0.39
7 20 0.53
8 3 0.08
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:68814586 original size:21 final size:20
Alignment explanation
Indices: 68814560--68814612 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
68814550 AAAAATTAGC
68814560 AGAAGGAA-AAAGAGAGAAAGA
1 AGAAGGAAGAAAG-GA-AAAGA
68814581 AGAAGGGAAGAAAGGAAAAGA
1 AGAA-GGAAGAAAGGAAAAGA
68814602 AGAA-GAAGAAA
1 AGAAGGAAGAAA
68814613 AATAAGGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 7 0.23
21 13 0.43
22 6 0.20
23 4 0.13
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (20 bp):
AGAAGGAAGAAAGGAAAAGA
Found at i:68817504 original size:14 final size:14
Alignment explanation
Indices: 68817485--68817521 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
68817475 AATTGAGATA
*
68817485 TTGTTCATTATAAG
1 TTGTTCATTACAAG
68817499 TTGTTCATTACAAG
1 TTGTTCATTACAAG
68817513 TTGTTCATT
1 TTGTTCATT
68817522 GCATAATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.24, C:0.11, G:0.14, T:0.51
Consensus pattern (14 bp):
TTGTTCATTACAAG
Found at i:68817883 original size:33 final size:33
Alignment explanation
Indices: 68817846--68817922 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
68817836 CAAGTTGGGG
* *
68817846 GGAGTAGAGAACGATGGTAGATACGA-CTCTGGA
1 GGAGTAGAGAACGATGGTAGATACAAGC-CGGGA
* * * *
68817879 GGAGTAGAGTATGGTGGTGGATACAAGCCGGGA
1 GGAGTAGAGAACGATGGTAGATACAAGCCGGGA
68817912 GGAGTAGAGAA
1 GGAGTAGAGAA
68817923 TATCGATGGA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
33 35 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.09, G:0.42, T:0.17
Consensus pattern (33 bp):
GGAGTAGAGAACGATGGTAGATACAAGCCGGGA
Found at i:68817954 original size:66 final size:66
Alignment explanation
Indices: 68817878--68818096 Score: 205
Period size: 66 Copynumber: 3.3 Consensus size: 66
68817868 ACGACTCTGG
* * * * * *
68817878 AGGAGTAGAGTATGGTGGTGGATACAAGCCGGGAGGAGTAGAGAATATCGATGGATACGAGCCAG
1 AGGAGCAGAGTACGGTGGTGGATACGAGCTGGAAGGAGTAGAGAATATCGGTGGATACGAGCCAG
68817943 A
66 A
* *
68817944 AGGAGCAGAGTACGGTGGTGGATACGAGCTAGAAGGAGT-G-GAGTA-CGGTGGTTGATACGAGC
1 AGGAGCAGAGTACGGTGGTGGATACGAGCTGGAAGGAGTAGAGAATATCGGT-G--GATACGAGC
*
68818006 TAGA
63 CAGA
** * * * *
68818010 AGGAGTGGAGTATGGTGGTGGATACGAGCTGGAAGGAGCAGAGTACTGT-GGTGGATACGAG-CA
1 AGGAGCAGAGTACGGTGGTGGATACGAGCTGGAAGGAGTAGAG-AATATCGGTGGATACGAGCCA
68818073 GGA
65 -GA
* *
68818076 AGGAGCGGAGTACGATGGTGG
1 AGGAGCAGAGTACGGTGGTGG
68818097 GCTGAAGATA
Statistics
Matches: 125, Mismatches: 20, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
63 3 0.02
64 5 0.04
65 2 0.02
66 107 0.86
67 1 0.01
68 2 0.02
69 5 0.04
ACGTcount: A:0.29, C:0.10, G:0.43, T:0.17
Consensus pattern (66 bp):
AGGAGCAGAGTACGGTGGTGGATACGAGCTGGAAGGAGTAGAGAATATCGGTGGATACGAGCCAG
A
Found at i:68817966 original size:33 final size:33
Alignment explanation
Indices: 68817929--68818096 Score: 230
Period size: 33 Copynumber: 5.1 Consensus size: 33
68817919 AGAATATCGA
* *
68817929 TGGATACGAGCCAGAAGGAGCAGAGTACGGTGG
1 TGGATACGAGCTAGAAGGAGCGGAGTACGGTGG
*
68817962 TGGATACGAGCTAGAAGGAGTGGAGTACGGTGG
1 TGGATACGAGCTAGAAGGAGCGGAGTACGGTGG
* * *
68817995 TTGATACGAGCTAGAAGGAGTGGAGTATGGTGG
1 TGGATACGAGCTAGAAGGAGCGGAGTACGGTGG
* * *
68818028 TGGATACGAGCTGGAAGGAGCAGAGTACTGTGG
1 TGGATACGAGCTAGAAGGAGCGGAGTACGGTGG
*
68818061 TGGATACGAGC-AGGAAGGAGCGGAGTACGATGG
1 TGGATACGAGCTA-GAAGGAGCGGAGTACGGTGG
68818094 TGG
1 TGG
68818097 GCTGAAGATA
Statistics
Matches: 119, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
33 119 1.00
ACGTcount: A:0.28, C:0.11, G:0.44, T:0.17
Consensus pattern (33 bp):
TGGATACGAGCTAGAAGGAGCGGAGTACGGTGG
Found at i:68818001 original size:99 final size:99
Alignment explanation
Indices: 68817878--68818096 Score: 262
Period size: 99 Copynumber: 2.2 Consensus size: 99
68817868 ACGACTCTGG
* * * *
68817878 AGGAGTAGAGTATGGTGGTGGATACAAGCCGGGAGGAGTAGAGAAT-ATCGATGGATACGAGCCA
1 AGGAGTGGAGTACGGTGGTGGATACAAGCCAGAAGGAGTAGAGAATGAT-GATGGATACGAGCCA
68817942 GAAGGAGCAGAGTACGGTGGTGGATACGAGCTA-GA
65 GAAGGAGCAGAGTACGGTGGTGGATACGAGC-AGGA
* * * * * * * **
68817977 AGGAGTGGAGTACGGTGGTTGATACGAGCTAGAAGGAGTGGAGTATGGTGGTGGATACGAGCTGG
1 AGGAGTGGAGTACGGTGGTGGATACAAGCCAGAAGGAGTAGAGAATGATGATGGATACGAGCCAG
*
68818042 AAGGAGCAGAGTACTGTGGTGGATACGAGCAGGA
66 AAGGAGCAGAGTACGGTGGTGGATACGAGCAGGA
* *
68818076 AGGAGCGGAGTACGATGGTGG
1 AGGAGTGGAGTACGGTGGTGG
68818097 GCTGAAGATA
Statistics
Matches: 101, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
98 1 0.01
99 99 0.98
100 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.43, T:0.17
Consensus pattern (99 bp):
AGGAGTGGAGTACGGTGGTGGATACAAGCCAGAAGGAGTAGAGAATGATGATGGATACGAGCCAG
AAGGAGCAGAGTACGGTGGTGGATACGAGCAGGA
Found at i:68819639 original size:115 final size:115
Alignment explanation
Indices: 68819437--68819665 Score: 395
Period size: 115 Copynumber: 2.0 Consensus size: 115
68819427 CACTCCCCAC
*
68819437 ACGGCAAATGAAATGTGTAGGTCTTTGGACGCCATCACTCTACTAAGGCAGAAATCAAGTCATAT
1 ACGGCAAATGAAATGTGTAGGTCTCTGGACGCCATCACTCTACTAAGGCAGAAATCAAGTCATAT
* * *
68819502 CGTAGATTAAAAGTTCGGATCAATGCTGCTGATCCAAACCCGGCTAACTT
66 CATAGATTAAAAGTCCGGATCAATGCTGCTAATCCAAACCCGGCTAACTT
* * *
68819552 ACGGCAAATGAAATGTGTGGGTCTCTGGACGCCATCGCTCTACTAAGGCAGAAATTAAGTCATAT
1 ACGGCAAATGAAATGTGTAGGTCTCTGGACGCCATCACTCTACTAAGGCAGAAATCAAGTCATAT
68819617 CATAGATTAAAAGTCCGGATCAATGCTGCTAATCCAAACCCGGCTAACT
66 CATAGATTAAAAGTCCGGATCAATGCTGCTAATCCAAACCCGGCTAACT
68819666 CTAAGAACGG
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
115 107 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.24
Consensus pattern (115 bp):
ACGGCAAATGAAATGTGTAGGTCTCTGGACGCCATCACTCTACTAAGGCAGAAATCAAGTCATAT
CATAGATTAAAAGTCCGGATCAATGCTGCTAATCCAAACCCGGCTAACTT
Found at i:68819827 original size:13 final size:13
Alignment explanation
Indices: 68819809--68819833 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68819799 TGTGACTATC
68819809 AAATAAAAATTTT
1 AAATAAAAATTTT
68819822 AAATAAAAATTT
1 AAATAAAAATTT
68819834 CATTACCATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAATAAAAATTTT
Found at i:68820918 original size:27 final size:24
Alignment explanation
Indices: 68820873--68820921 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 24
68820863 TTACTAACCT
*
68820873 TTTTTTTTTCTTCTTCTTCTTCTC
1 TTTTTTTTTCCTCTTCTTCTTCTC
68820897 TTTTTTTTTCACTCTTTGCTTCTTC
1 TTTTTTTTTC-CTC-TT-CTTCTTC
68820922 GTGGACGCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 10 0.48
25 2 0.10
26 2 0.10
27 7 0.33
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.71
Consensus pattern (24 bp):
TTTTTTTTTCCTCTTCTTCTTCTC
Found at i:68831828 original size:21 final size:21
Alignment explanation
Indices: 68831800--68831905 Score: 95
Period size: 21 Copynumber: 5.0 Consensus size: 21
68831790 TGATCAGTAT
*
68831800 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* *
68831821 ATGACACACGAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
68831842 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* *
68831863 ACGACACACGAGGTGCCTGAAA
1 ACGACACACAAAGTGCCT-AAA
* *
68831885 TACAACACATAAAGTGCCTAA
1 -ACGACACACAAAGTGCCTAA
68831906 TTCGTAAAGC
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
21 53 0.76
22 3 0.04
23 14 0.20
ACGTcount: A:0.41, C:0.25, G:0.20, T:0.14
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:68832307 original size:15 final size:15
Alignment explanation
Indices: 68832277--68832334 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
68832267 TCATATATAT
*
68832277 TATATAATTTAATCAA
1 TATAT-ATTCAATCAA
68832293 TATATATTCAATCAA
1 TATATATTCAATCAA
*
68832308 AATA-ATTTCAATCAA
1 TATATA-TTCAATCAA
*
68832323 TATAAATTCAAT
1 TATATATTCAAT
68832335 AAATTCATCG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
14 1 0.03
15 30 0.81
16 6 0.16
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (15 bp):
TATATATTCAATCAA
Found at i:68846728 original size:28 final size:28
Alignment explanation
Indices: 68846697--68846786 Score: 83
Period size: 28 Copynumber: 3.0 Consensus size: 28
68846687 TTTTTTATTT
*
68846697 TAAATATTTTTTATATTATTTATTTTTA
1 TAAATATTTGTTATATTATTTATTTTTA
* *
68846725 TAAATATTAGTTATTATT-TTTATTTATA
1 TAAATATTTGTTA-TATTATTTATTTTTA
*
68846753 TATTATCATTATGTTATATTATTGTATATTTTA
1 TA-AAT-ATT-TGTTATATTATT-TAT-TTTTA
68846786 T
1 T
68846787 CTATAAATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
28 22 0.45
29 6 0.12
30 7 0.14
31 6 0.12
32 3 0.06
33 5 0.10
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.63
Consensus pattern (28 bp):
TAAATATTTGTTATATTATTTATTTTTA
Found at i:68846764 original size:26 final size:27
Alignment explanation
Indices: 68846735--68846817 Score: 75
Period size: 28 Copynumber: 3.1 Consensus size: 27
68846725 TAAATATTAG
68846735 TTATTAT-TTTTATTTATATATTATCA
1 TTATTATATTTTATTTATATATTATCA
* *
68846761 TTATGT-TATATTATTGTATATTTTATCTA
1 TTAT-TATATTTTATT-TATATATTATC-A
*
68846790 TAAATTATATTTTA-TTATATATT-TCA
1 T-TATTATATTTTATTTATATATTATCA
68846816 TT
1 TT
68846818 CTATATATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
26 7 0.16
27 9 0.20
28 17 0.38
29 4 0.09
30 8 0.18
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (27 bp):
TTATTATATTTTATTTATATATTATCA
Found at i:68847222 original size:84 final size:84
Alignment explanation
Indices: 68847127--68847291 Score: 312
Period size: 84 Copynumber: 2.0 Consensus size: 84
68847117 AATCATTCGT
68847127 ATTTTTTTAAGTGTTATTTTGTCACTCCTTATTATTATAAATTTTGATTTCCACTTCTACATTTA
1 ATTTTTTTAAGTGTTATTTTGTCACTCCTTATTATTATAAATTTTGATTTCCACTTCTACATTTA
68847192 TATTCTTTAATTTATTCTG
66 TATTCTTTAATTTATTCTG
* *
68847211 ATTTTTTTAAGTGTTATTTTGTCACTCCTTATTGTTATAAATTTTGATTTCCACTTCTACTTTTA
1 ATTTTTTTAAGTGTTATTTTGTCACTCCTTATTATTATAAATTTTGATTTCCACTTCTACATTTA
68847276 TATTCTTTAATTTATT
66 TATTCTTTAATTTATT
68847292 ATGAATTGTT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 79 1.00
ACGTcount: A:0.23, C:0.13, G:0.06, T:0.58
Consensus pattern (84 bp):
ATTTTTTTAAGTGTTATTTTGTCACTCCTTATTATTATAAATTTTGATTTCCACTTCTACATTTA
TATTCTTTAATTTATTCTG
Found at i:68850824 original size:16 final size:14
Alignment explanation
Indices: 68850792--68850844 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
68850782 ATCGATACCT
68850792 TTTGCATTCATGCA
1 TTTGCATTCATGCA
68850806 TTTGCATCTCATAGCA
1 TTTGCAT-TCAT-GCA
68850822 TTT-CATTGCAT-CA
1 TTTGCATT-CATGCA
68850835 TTTGCATTCA
1 TTTGCATTCA
68850845 AAATTATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.20
14 12 0.34
15 10 0.29
16 6 0.17
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (14 bp):
TTTGCATTCATGCA
Found at i:68852741 original size:16 final size:17
Alignment explanation
Indices: 68852709--68852741 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
68852699 TTTATAAGTA
*
68852709 TATATCAATCGTTTCAT
1 TATATCAATCATTTCAT
68852726 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
68852742 GTTTCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:68853184 original size:92 final size:92
Alignment explanation
Indices: 68853027--68853285 Score: 401
Period size: 92 Copynumber: 2.8 Consensus size: 92
68853017 TTTGACATGA
* * * * *
68853027 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATTTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
* *
68853092 CATGGTCTTATTCTTTTCATGTCACGT
66 CATGGTCTTATTCGTTTCATATCACGT
* *
68853119 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
68853184 CATGGTCTTATTCGTTTCATATCACGT
66 CATGGTCTTATTCGTTTCATATCACGT
* * * *
68853211 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
68853276 CATGGTCTTA
66 CATGGTCTTA
68853286 CATATTTCAT
Statistics
Matches: 152, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 152 1.00
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCGTTTCATATCACGT
Found at i:68853300 original size:46 final size:46
Alignment explanation
Indices: 68853027--68853299 Score: 352
Period size: 46 Copynumber: 5.9 Consensus size: 46
68853017 TTTGACATGA
* * * * *
68853027 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * * *
68853073 TGCCATGGTATTTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *** *
68853119 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
68853165 TGCCATGGTATCTTTCAACCATGGTCTTATTCGTTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
68853211 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
68853257 TGCCATGGTATCTTTCAACCATGGTCTTACAT-ATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCATATCA
68853300 GAGAGCACAC
Statistics
Matches: 203, Mismatches: 22, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
45 4 0.02
46 199 0.98
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:68863150 original size:204 final size:204
Alignment explanation
Indices: 68862705--68863243 Score: 835
Period size: 204 Copynumber: 2.6 Consensus size: 204
68862695 GGCTGAAGCA
* * * * *
68862705 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAGCGAAGAGATAGCTGAGTTGGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGTTGATTTAGC
* * * *
68862770 TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGCCATCTCTGTATTGTCAGAGAATAAA
66 TTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTC--TATTGTCAGAGAACAAA
* * ** *
68862835 TCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCAGATGTT
129 TCAAAGTTTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGAT
*
68862900 TATACTGAACC
194 TAGACTGAACC
* * *
68862911 AGATCTAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGTTGATTTAGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGTTGATTTAGC
68862976 TTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTATTGTCAGAGAACAAATC
66 TTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTATTGTCAGAGAACAAATC
* *
68863041 AAAGTTTGGCATCTCCGTATTCGACGGAGAGTAGACACATAGCAGATCTAACCTTCAGATGATTA
131 AAAGTTTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTA
**
68863106 GACTGAAGT
196 GACTGAACC
* * *
68863115 AGATCCAAGATGGTTTGGTATCATTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGATTTAGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGTTGATTTAGC
68863180 TTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTATTGTCAGAGAACAAAT
66 TTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTATTGTCAGAGAACAAAT
68863244 TAAAAAAGCA
Statistics
Matches: 305, Mismatches: 28, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
204 205 0.67
206 100 0.33
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (204 bp):
AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGTTGATTTAGC
TTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTATTGTCAGAGAACAAATC
AAAGTTTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGATTA
GACTGAACC
Found at i:68864684 original size:16 final size:16
Alignment explanation
Indices: 68864665--68864698 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
68864655 ATTAAATTCA
68864665 ATTTT-AATAATTTTTT
1 ATTTTAAAT-ATTTTTT
68864681 ATTTTAAATATTTTTT
1 ATTTTAAATATTTTTT
68864697 AT
1 AT
68864699 ATTATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTTTAAATATTTTTT
Found at i:68864705 original size:28 final size:27
Alignment explanation
Indices: 68864666--68864746 Score: 69
Period size: 28 Copynumber: 3.0 Consensus size: 27
68864656 TTAAATTCAA
*
68864666 TTTTAATAATTT-TTTATTTTAAATATT
1 TTTTAATAATTTATTT-TTATAAATATT
*
68864693 TTTTATATTATTTATTTTTATAAATATT
1 TTTTA-ATAATTTATTTTTATAAATATT
** *
68864721 AGTT-ATAATTT-TTATTTATATATATT
1 TTTTAATAATTTATT-TTTATAAATATT
68864747 ATCCATTATG
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
25 2 0.04
26 17 0.38
27 5 0.11
28 18 0.40
29 3 0.07
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.65
Consensus pattern (27 bp):
TTTTAATAATTTATTTTTATAAATATT
Found at i:68864731 original size:26 final size:25
Alignment explanation
Indices: 68864671--68864747 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 25
68864661 TTCAATTTTA
* **
68864671 ATAATTTTTTATTTTAAATATTTTTT
1 ATAATTTTTT-TTATAAATATTAGTT
68864697 ATATTATTTATTTTTATAAATATTAGTT
1 ATA--ATTT-TTTTTATAAATATTAGTT
*
68864725 ATAATTTTTATTTATATATATTA
1 ATAATTTTT-TTTATAAATATTA
68864748 TCCATTATGT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
25 2 0.05
26 19 0.44
28 19 0.44
29 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (25 bp):
ATAATTTTTTTTATAAATATTAGTT
Found at i:68864741 original size:22 final size:19
Alignment explanation
Indices: 68864694--68864777 Score: 53
Period size: 22 Copynumber: 4.1 Consensus size: 19
68864684 TTAAATATTT
68864694 TTTATATTATTTATTTTTA
1 TTTATATTATTTATTTTTA
**
68864713 TAAATATTAGTTATAATTTTTA
1 TTTATATTA-TT-T-ATTTTTA
**
68864735 TTTATA-TATATTATCCATTA
1 TTTATATTAT-TTAT-TTTTA
68864755 TGTTATATTATTGTATATTTTA
1 T-TTATATTATT-TAT-TTTTA
68864777 T
1 T
68864778 CTATGAATTA
Statistics
Matches: 48, Mismatches: 9, Indels: 13
0.69 0.13 0.19
Matches are distributed among these distances:
19 9 0.19
20 8 0.17
21 10 0.21
22 21 0.44
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (19 bp):
TTTATATTATTTATTTTTA
Found at i:68868371 original size:4 final size:4
Alignment explanation
Indices: 68868362--68868397 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
68868352 AGATTAAACC
68868362 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA
68868398 ACCTTAATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TTAA
Found at i:68886591 original size:5 final size:5
Alignment explanation
Indices: 68886577--68886610 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
68886567 CTTGGAATTC
*
68886577 AATGA TATGA AATGA AATGA AATGA AATGA AATG
1 AATGA AATGA AATGA AATGA AATGA AATGA AATG
68886611 CTATATGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.21, T:0.24
Consensus pattern (5 bp):
AATGA
Found at i:68888187 original size:104 final size:104
Alignment explanation
Indices: 68888007--68888230 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
68887997 TGTATATAAA
** * *
68888007 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
68888072 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
68888111 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
68888175 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
68888215 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
68888231 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:68888282 original size:71 final size:72
Alignment explanation
Indices: 68888149--68888300 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
68888139 TCATTGGTGG
* *
68888149 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
68888214 GAGGGGT
66 GAGGGGT
***
68888221 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
68888285 GAGGGGT
66 GAGGGGT
68888292 TGCTAAGTG
1 TGCTAAGTG
68888301 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:68895745 original size:104 final size:104
Alignment explanation
Indices: 68895565--68895788 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
68895555 TGTATATAAA
** * *
68895565 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
68895630 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
68895669 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
68895733 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
68895773 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
68895789 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:68895840 original size:71 final size:72
Alignment explanation
Indices: 68895707--68895858 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
68895697 TCATTGGTGG
* *
68895707 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
68895772 GAGGGGT
66 GAGGGGT
***
68895779 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
68895843 GAGGGGT
66 GAGGGGT
68895850 TGCTAAGTG
1 TGCTAAGTG
68895859 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:68903473 original size:24 final size:24
Alignment explanation
Indices: 68903441--68903489 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
68903431 GAGATTTAAG
68903441 TTCACTTTCTTGTTTCTTTTTTCT
1 TTCACTTTCTTGTTTCTTTTTTCT
68903465 TTCACTTTCTTGTTTCTTTTTTCT
1 TTCACTTTCTTGTTTCTTTTTTCT
68903489 T
1 T
68903490 CTTTTCCTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.04, C:0.20, G:0.04, T:0.71
Consensus pattern (24 bp):
TTCACTTTCTTGTTTCTTTTTTCT
Found at i:68904055 original size:202 final size:202
Alignment explanation
Indices: 68903687--68904289 Score: 1129
Period size: 202 Copynumber: 3.0 Consensus size: 202
68903677 AAATTGTTGA
*
68903687 ATTTCCGATTTTTGCTAATTATTTACATATAAATCATTGAACTGTCAATTTCTATGTCAACTTTT
1 ATTTCCGATTTTTGCTAATTATTTACATATAAATCATTGAACTGTTAATTTCTATGTCAACTTTT
* *
68903752 TAACCGTAAGGTTTAGCAA-A-TCTTTAATTGGACATTTCCATAAAGTATAAGGATCAAATTTTG
66 TAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGTATAAGGATCAAATTTTG
68903815 ACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATTA
131 ACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATTA
68903880 AACCTAC
196 AACCTAC
*
68903887 ATTTCCGATATTTGCTAATTATTTACATATAAATCATTGAACTGTTAATTTCTATGTCAACTTTT
1 ATTTCCGATTTTTGCTAATTATTTACATATAAATCATTGAACTGTTAATTTCTATGTCAACTTTT
68903952 TAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGTATAAGGATCAAATTTTG
66 TAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGTATAAGGATCAAATTTTG
68904017 ACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATTA
131 ACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATTA
68904082 AACCTAC
196 AACCTAC
*
68904089 ATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTTT
1 ATTTCCGATTTTTGCTAATTATTTACATATAAATCATTGAACTGTTAATTTCTATGTCAACTTTT
68904154 TAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGTATAAGGATCAAATTTTG
66 TAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGTATAAGGATCAAATTTTG
* *
68904219 ACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGCAGAGGGATGGAAATCATAATTA
131 ACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATTA
68904284 AACCTA
196 AACCTA
68904290 AAAAAGGTAA
Statistics
Matches: 393, Mismatches: 8, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
200 81 0.21
201 1 0.00
202 311 0.79
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.37
Consensus pattern (202 bp):
ATTTCCGATTTTTGCTAATTATTTACATATAAATCATTGAACTGTTAATTTCTATGTCAACTTTT
TAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGTATAAGGATCAAATTTTG
ACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATTA
AACCTAC
Found at i:68907243 original size:18 final size:18
Alignment explanation
Indices: 68907220--68907259 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
68907210 TACCCAGTGT
68907220 GCAAGCTATAGCCTTTGG
1 GCAAGCTATAGCCTTTGG
68907238 GCAAGCTATAGCCTTTGG
1 GCAAGCTATAGCCTTTGG
68907256 GCAA
1 GCAA
68907260 ATCCCTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (18 bp):
GCAAGCTATAGCCTTTGG
Done.