Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 208 of 284
Found at i:69188420 original size:21 final size:21
Alignment explanation
Indices: 69188387--69188430 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
69188377 AGCATCACGT
* *
69188387 GTTAAGCTAAAATTATTATGG
1 GTTAAGCCAAAATTACTATGG
* *
69188408 GTTAAGCCGAAATTGCTATGG
1 GTTAAGCCAAAATTACTATGG
69188429 GT
1 GT
69188431 AAAACATAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.34
Consensus pattern (21 bp):
GTTAAGCCAAAATTACTATGG
Found at i:69189525 original size:26 final size:26
Alignment explanation
Indices: 69189496--69189552 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
69189486 ATTTAATACC
*
69189496 TAAATGACATA-TACAATATAAAAATA
1 TAAAAGACATAGTACAA-ATAAAAATA
** *
69189522 TAAAAGAGTTAGTATAAATAAAAATA
1 TAAAAGACATAGTACAAATAAAAATA
69189548 TAAAA
1 TAAAA
69189553 TAAAGTGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.63, C:0.04, G:0.07, T:0.26
Consensus pattern (26 bp):
TAAAAGACATAGTACAAATAAAAATA
Found at i:69189617 original size:12 final size:13
Alignment explanation
Indices: 69189599--69189647 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
69189589 AAAAAATATG
69189599 ATATTTAATAATA
1 ATATTTAATAATA
69189612 AT-TTTAA-AATA
1 ATATTTAATAATA
*
69189623 GTATTTAATATATA
1 ATATTTAATA-ATA
*
69189637 ATATATAATAA
1 ATATTTAATAA
69189648 CAAAATTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:69189646 original size:24 final size:24
Alignment explanation
Indices: 69189591--69189644 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 24
69189581 CTTATAATAA
*
69189591 AAAATATGATATTTAATAATAATTTT
1 AAAATA-G-TATTTAATAATAATTAT
69189617 AAAATAGTATTTAATATATAATATAT
1 AAAATAGTATTTAATA-ATAAT-TAT
69189643 AA
1 AA
69189645 TAACAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 9 0.36
25 6 0.24
26 10 0.40
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
AAAATAGTATTTAATAATAATTAT
Found at i:69189857 original size:20 final size:20
Alignment explanation
Indices: 69189832--69189869 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69189822 ATATATATAC
*
69189832 AATATAAAAATATATAAAAG
1 AATATAAAAATAAATAAAAG
*
69189852 AATATAAATATAAATAAA
1 AATATAAAAATAAATAAA
69189870 GTGAGTAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
AATATAAAAATAAATAAAAG
Found at i:69189930 original size:12 final size:13
Alignment explanation
Indices: 69189912--69189960 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
69189902 AAAAAATATG
69189912 ATATTTAATAATA
1 ATATTTAATAATA
69189925 AT-TTTAA-AATA
1 ATATTTAATAATA
*
69189936 GTATTTAATATATA
1 ATATTTAATA-ATA
*
69189950 ATATATAATAA
1 ATATTTAATAA
69189961 AAAAATTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:69189959 original size:24 final size:24
Alignment explanation
Indices: 69189904--69189957 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 24
69189894 CTTATAATAA
*
69189904 AAAATATGATATTTAATAATAATTTT
1 AAAATA-G-TATTTAATAATAATTAT
69189930 AAAATAGTATTTAATATATAATATAT
1 AAAATAGTATTTAATA-ATAAT-TAT
69189956 AA
1 AA
69189958 TAAAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 9 0.36
25 6 0.24
26 10 0.40
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
AAAATAGTATTTAATAATAATTAT
Found at i:69190116 original size:21 final size:23
Alignment explanation
Indices: 69190058--69190116 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
69190048 AATTTATATT
*
69190058 TATA-ATGAAATAA-TTATATAA
1 TATATATGAAATAAGTTATAGAA
*
69190079 TATATATAAATATAAGTT-TAGAA
1 TATATATGAA-ATAAGTTATAGAA
69190102 TA-ATATGAAATAAGT
1 TATATATGAAATAAGT
69190117 AATTAATGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 10 0.31
22 10 0.31
23 10 0.31
24 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.37
Consensus pattern (23 bp):
TATATATGAAATAAGTTATAGAA
Found at i:69190280 original size:16 final size:15
Alignment explanation
Indices: 69190257--69190306 Score: 66
Period size: 14 Copynumber: 3.2 Consensus size: 15
69190247 TTTTAATGAT
69190257 AAAAATATATAGAT-
1 AAAAATATATAGATA
69190271 AAAAATATATAGATA
1 AAAAATATATAGATA
69190286 AAAATATATAATAGTATA
1 AAAA-ATAT-ATAG-ATA
69190304 AAA
1 AAA
69190307 TGACATAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
14 14 0.44
15 4 0.12
16 4 0.12
17 4 0.12
18 6 0.19
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAAAATATATAGATA
Found at i:69190292 original size:12 final size:14
Alignment explanation
Indices: 69190254--69190295 Score: 84
Period size: 14 Copynumber: 3.0 Consensus size: 14
69190244 AATTTTTAAT
69190254 GATAAAAATATATA
1 GATAAAAATATATA
69190268 GATAAAAATATATA
1 GATAAAAATATATA
69190282 GATAAAAATATATA
1 GATAAAAATATATA
69190296 ATAGTATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (14 bp):
GATAAAAATATATA
Found at i:69190375 original size:20 final size:19
Alignment explanation
Indices: 69190274--69190426 Score: 118
Period size: 20 Copynumber: 7.7 Consensus size: 19
69190264 TATAGATAAA
*
69190274 AATATATAGATAAAAATATAT
1 AATATATA-A-AATAATATAT
69190295 AATAGTATAAAATGACATA-AT
1 AATA-TATAAAAT-A-ATATAT
*
69190316 -A-ATATAAATTAA-ATAT
1 AATATATAAAATAATATAT
* *
69190332 AATATATAATATAAAAGTAT
1 AATATATAAAATAATA-TAT
*
69190352 -ATATGTGAAAATAATATAT
1 AATATAT-AAAATAATATAT
69190371 AATATATATAAATAATATGAAT
1 AATATATA-AAATAATAT--AT
69190393 AATATATAAAATAATTATAT
1 AATATATAAAATAA-TATAT
*
69190413 AATATATAATATAA
1 AATATATAAAATAA
69190427 AAATAAAAAT
Statistics
Matches: 109, Mismatches: 9, Indels: 29
0.74 0.06 0.20
Matches are distributed among these distances:
15 1 0.01
16 3 0.03
17 2 0.02
18 16 0.15
19 11 0.10
20 42 0.39
21 14 0.13
22 20 0.18
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (19 bp):
AATATATAAAATAATATAT
Found at i:69190379 original size:9 final size:9
Alignment explanation
Indices: 69190365--69190420 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
69190355 TGTGAAAATA
69190365 ATATATAAT
1 ATATATAAT
69190374 ATATATAA-
1 ATATATAAT
69190382 ATAATATGAAT
1 AT-ATAT-AAT
69190393 A-ATAT-AT
1 ATATATAAT
*
69190400 A-AAATAAT
1 ATATATAAT
69190408 -TATATAAT
1 ATATATAAT
69190416 ATATA
1 ATATA
69190421 ATATAAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
7 6 0.15
8 10 0.26
9 20 0.51
10 2 0.05
11 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (9 bp):
ATATATAAT
Found at i:69190414 original size:29 final size:29
Alignment explanation
Indices: 69190361--69190432 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
69190351 TATATGTGAA
*
69190361 AATAATATATAATAT-ATATAAATAATAT
1 AATAATATATAAAATAATATAAATAATAT
*
69190389 GAATAATATATAAAATAAT-TATATAATAT
1 -AATAATATATAAAATAATATAAATAATAT
69190418 -ATAATATA-AAAATAA
1 AATAATATATAAAATAA
69190433 AAATAAAACA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.17
27 8 0.20
29 23 0.57
30 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.36
Consensus pattern (29 bp):
AATAATATATAAAATAATATAAATAATAT
Found at i:69194864 original size:39 final size:39
Alignment explanation
Indices: 69194774--69194864 Score: 96
Period size: 39 Copynumber: 2.3 Consensus size: 39
69194764 TAATTAACCG
* * * *
69194774 AATATAATAATTATAATTACCATAATTATAATAATGTTTG
1 AATA-AATAATTACAATTACAATAATTATAATAATGATTC
*
69194814 ACTGAAA-AATTACAATTACAATAATTATAATAAT-ATTC
1 AAT-AAATAATTACAATTACAATAATTATAATAATGATTC
69194852 AATACAATAATTA
1 AATA-AATAATTA
69194865 TAATAAGGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
37 1 0.02
38 6 0.14
39 30 0.71
40 4 0.10
41 1 0.02
ACGTcount: A:0.52, C:0.08, G:0.03, T:0.37
Consensus pattern (39 bp):
AATAAATAATTACAATTACAATAATTATAATAATGATTC
Found at i:69214431 original size:28 final size:28
Alignment explanation
Indices: 69214395--69214502 Score: 105
Period size: 28 Copynumber: 3.9 Consensus size: 28
69214385 CTGCCAGAAC
* *
69214395 AGAT-ATTGTGACAGAGTCACCAGATAT
1 AGATAATTGTGACAGAGCCACCAGAAAT
*
69214422 AGATAATTGTGACAGGGCCACCAGAAAT
1 AGATAATTGTGACAGAGCCACCAGAAAT
* * *
69214450 AGATATTTGTGGCAGAGCCACCATAACA-
1 AGATAATTGTGACAGAGCCACCAGAA-AT
* * *
69214478 A-ATATTTGTGGCAGAGCCATCAGAA
1 AGATAATTGTGACAGAGCCACCAGAA
69214503 CACTTCCTCC
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
27 26 0.37
28 43 0.61
29 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (28 bp):
AGATAATTGTGACAGAGCCACCAGAAAT
Found at i:69234004 original size:21 final size:21
Alignment explanation
Indices: 69233980--69234034 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
69233970 ATGAACTTTA
69233980 CATTTTAGATCAAGATATGCC
1 CATTTTAGATCAAGATATGCC
69234001 CATTTTAGATCAAGATATGCC
1 CATTTTAGATCAAGATATGCC
69234022 CATTTTAGATCAA
1 CATTTTAGATCAA
69234035 ACTTATCTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.35
Consensus pattern (21 bp):
CATTTTAGATCAAGATATGCC
Found at i:69234309 original size:35 final size:35
Alignment explanation
Indices: 69234264--69234333 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
69234254 CAGGCCAAGG
69234264 AAGGTTTTCAATACTTCATTACATTCACTAATGAC
1 AAGGTTTTCAATACTTCATTACATTCACTAATGAC
*
69234299 AAGGTTTTCAATACTTCATTACTTTCACTAATGAC
1 AAGGTTTTCAATACTTCATTACATTCACTAATGAC
69234334 TTCGGTAGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.39
Consensus pattern (35 bp):
AAGGTTTTCAATACTTCATTACATTCACTAATGAC
Found at i:69238138 original size:343 final size:343
Alignment explanation
Indices: 69237438--69238318 Score: 1270
Period size: 343 Copynumber: 2.6 Consensus size: 343
69237428 CAATTTAGAT
* *
69237438 ATGAAAAGTTTATCACAGAAAGGTTACGTCGAATCATGACTTCTTGTAACTTGGGTAGCAATGAT
1 ATGAAAAGTTTATCACAAAAAGGTTATGTCGAATCATGACTTCTTGTAACTTGGGTAGCAATGAT
* * * * *
69237503 GCATTGCTAGACACCACTCATTACTTGTAACATTATAAATGTTCTAGTATTACTACCAACATTAA
66 GCATTGCTAGACGCCACTCATTACTTGAAACATTAGAAATGTTCTAGTATTACTACCAACGTTAC
* * * *
69237568 AAGAACCTACAGGGTCACACCCTATGGTTAAAGCAAACAGACTTCACACCAATAGAATAACCATG
131 AAGAACCTACAAGGTCACACCCTATGGTTAAAGCGAACAGACTTCACACCAATAGAATGACCATA
* *
69237633 CTCAAATAAGTTGATATAATATATCACACTTATTTTTTTTTCATTGTAGTCTACTCAAAATATCA
196 CTCAAATAAGTTGATATAAGATATCACACTAATTTTTTTTTCATTGTAGTCTACTCAAAATATCA
* *
69237698 AAAAATATGAGATTGGACTATACAAATGTGACTATACCATGGCTATTTCCAATTTAGACATAAAG
261 AAAAATATAAGATTGGACTATACAAATGTGACTATACCATGACTATTTCCAATTTAGACATAAAG
* *
69237763 GATAAAATGATATAATAC
326 GATAAAAGGATATAATAA
* * *
69237781 ATGAAAAGTTTATCACAAAAAGGTTATGCCAAATCATGACTTCTTGTAACTTGGGTAGGAATGAT
1 ATGAAAAGTTTATCACAAAAAGGTTATGTCGAATCATGACTTCTTGTAACTTGGGTAGCAATGAT
* *
69237846 GCATTGCTAGACGCCACTCATTACTTGAAACATTAGAAATGTTATAGTTTTACTACCAACGTTAC
66 GCATTGCTAGACGCCACTCATTACTTGAAACATTAGAAATGTTCTAGTATTACTACCAACGTTAC
* *
69237911 AAGAACCTACAAGGTCACACCCTATGGTTAAAGCGAACAGACTTCACACCAATATAATGGCCATA
131 AAGAACCTACAAGGTCACACCCTATGGTTAAAGCGAACAGACTTCACACCAATAGAATGACCATA
* *
69237976 CTCAAATAAGTTGATATAAGATA-C-CA-TAACTTTTTTGTTT-ATTGTAGTCTATTCAGAATAT
196 CTCAAATAAGTTGATATAAGATATCACACTAA-TTTTTT-TTTCATTGTAGTCTACTCAAAATAT
* * * * *
69238037 TAAGAAATATAAGATTGGACTATACAAGTGTGACTATACCATGACTTGTTTCCAATTTAGATATA
259 CAAAAAATATAAGATTGGACTATACAAATGTGACTATACCATGAC-TATTTCCAATTTAGACATA
* *
69238102 AATGATAAAAGGATATTATAAA
323 AAGGATAAAAGGATATAAT-AA
69238124 ATGAAATA-TTTATCACAAAAAGGTTATGTCGAATCACT-ACTTCTTGTAACTTGGGTAGCAATG
1 ATGAAA-AGTTTATCACAAAAAGGTTATGTCGAATCA-TGACTTCTTGTAACTTGGGTAGCAATG
* * *
69238187 ATGTATTGCTAGACGCCACTCATTGCTTGAAACATTAGAAATGTTCTAGTATTACTACCAATGTT
64 ATGCATTGCTAGACGCCACTCATTACTTGAAACATTAGAAATGTTCTAGTATTACTACCAACGTT
* * * ** * * *
69238252 ACAAGAACCTACAAGATCATACCTTATGGTTAAAAAGAATAGACTTCGCACCAATAGAATGAGCA
129 ACAAGAACCTACAAGGTCACACCCTATGGTTAAAGCGAACAGACTTCACACCAATAGAATGACCA
69238317 TA
194 TA
69238319 TACCATCCCA
Statistics
Matches: 481, Mismatches: 51, Indels: 12
0.88 0.09 0.02
Matches are distributed among these distances:
340 2 0.00
341 67 0.14
342 37 0.08
343 373 0.78
344 2 0.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.31
Consensus pattern (343 bp):
ATGAAAAGTTTATCACAAAAAGGTTATGTCGAATCATGACTTCTTGTAACTTGGGTAGCAATGAT
GCATTGCTAGACGCCACTCATTACTTGAAACATTAGAAATGTTCTAGTATTACTACCAACGTTAC
AAGAACCTACAAGGTCACACCCTATGGTTAAAGCGAACAGACTTCACACCAATAGAATGACCATA
CTCAAATAAGTTGATATAAGATATCACACTAATTTTTTTTTCATTGTAGTCTACTCAAAATATCA
AAAAATATAAGATTGGACTATACAAATGTGACTATACCATGACTATTTCCAATTTAGACATAAAG
GATAAAAGGATATAATAA
Found at i:69238393 original size:17 final size:17
Alignment explanation
Indices: 69238371--69238455 Score: 53
Period size: 17 Copynumber: 5.0 Consensus size: 17
69238361 GATAAATATC
69238371 GCCTGGCGGACAGAATA
1 GCCTGGCGGACAGAATA
* * *
69238388 GCCTGGCGAACAGTATT
1 GCCTGGCGGACAGAATA
** ** * * *
69238405 GTTTGGCAAATAGTATT
1 GCCTGGCGGACAGAATA
*
69238422 GCCTGGCGGACAAAATA
1 GCCTGGCGGACAGAATA
* *
69238439 ACCTGGCGGATAGAATA
1 GCCTGGCGGACAGAATA
69238456 ACCGGGTGAA
Statistics
Matches: 50, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 50 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (17 bp):
GCCTGGCGGACAGAATA
Found at i:69238456 original size:17 final size:17
Alignment explanation
Indices: 69238423--69238458 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
69238413 AATAGTATTG
69238423 CCTGGCGGACAAAATAA
1 CCTGGCGGACAAAATAA
* *
69238440 CCTGGCGGATAGAATAA
1 CCTGGCGGACAAAATAA
69238457 CC
1 CC
69238459 GGGTGAATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.36, C:0.25, G:0.25, T:0.14
Consensus pattern (17 bp):
CCTGGCGGACAAAATAA
Found at i:69242732 original size:16 final size:17
Alignment explanation
Indices: 69242697--69242732 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
69242687 CCTAATTCTC
69242697 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
69242713 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
69242728 CCTTC
1 CCTTC
69242733 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:69250024 original size:47 final size:46
Alignment explanation
Indices: 69249904--69250166 Score: 171
Period size: 47 Copynumber: 5.6 Consensus size: 46
69249894 AATTTCTTGT
* * * * * **
69249904 GTGCCAGTGTAAGACACGTCTGCGACATGCATCGACCACA-TTATGA
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCG-GCATAGAGATGA
* * *
69249950 GTG-TCAGTATAAGACCGTGTCTAGGACATGGCATCGGCATAGAGATGA
1 GTGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATAGAGATGA
* * *
69249998 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATTA
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATAGA-GATGA
* * *
69250045 -TAGCCAGTGTAAGACGTGTCTGGGACATGCATCGGC-TA-AGA-GTC
1 GT-GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATAGAGATG-A
* * * * *
69250089 GTGCTAGTGTAAAACATGT-TCGGGACATGCATCAGCACGTATATACGA
1 GTGCTAGTGTAAGACATGTCT-GGGACATGCATCGGCA--TAGAGATGA
* *
69250137 GAGCTAGTATAAGACCATGTCTGGGACATG
1 GTGCTAGTGTAAGA-CATGTCTGGGACATG
69250167 GTATCGGCCT
Statistics
Matches: 170, Mismatches: 30, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.01
44 30 0.18
45 2 0.01
46 24 0.14
47 63 0.37
48 34 0.20
49 15 0.09
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATAGAGATGA
Found at i:69250071 original size:94 final size:91
Alignment explanation
Indices: 69249904--69250121 Score: 237
Period size: 94 Copynumber: 2.4 Consensus size: 91
69249894 AATTTCTTGT
* * * * *
69249904 GTGCCAGTGTAAGACACGTCTGCGACATGCATCGACCACATTATGAGTGTCAGTATAAGACCGTG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATGATGAGTGCCAGTATAAGACCGTG
69249969 TCTAGGACATGGCATCGGC-ATAGAGATGA
66 TCTAGGACAT-GCATCGGCTA-AGAG-T-A
* * * *
69249998 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATTA-TAGCCAGTGTAAGA-CG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATGATGAGT-GCCAGTATAAGACCG
* *
69250061 TGTCTGGGACATGCATCGGCTAAGAGTC
64 TGTCTAGGACATGCATCGGCTAAGAGTA
*
69250089 GTGCTAGTGTAAAACATGT-TCGGGACATGCATC
1 GTGCTAGTGTAAGACATGTCT-GGGACATGCATC
69250122 AGCACGTATA
Statistics
Matches: 108, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
90 1 0.01
91 30 0.28
92 1 0.01
93 12 0.11
94 49 0.45
95 15 0.14
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (91 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATGATGAGTGCCAGTATAAGACCGTG
TCTAGGACATGCATCGGCTAAGAGTA
Found at i:69251066 original size:55 final size:55
Alignment explanation
Indices: 69251004--69251108 Score: 174
Period size: 55 Copynumber: 1.9 Consensus size: 55
69250994 TTTAGTATAC
* * *
69251004 GGGTAGGCCACATGGGCGTGTGTCATGGCCGTGTTTTAAAGTCAGTGTTGTCCAT
1 GGGTAGGCCACACGAGCGTGTGTCATGGCCGTGTTTTAAAATCAGTGTTGTCCAT
*
69251059 GGGTAGGCCACACGAGTGTGTGTCATGGCCGTGTTTTAAAATCAGTGTTG
1 GGGTAGGCCACACGAGCGTGTGTCATGGCCGTGTTTTAAAATCAGTGTTG
69251109 CATACAGGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.18, C:0.17, G:0.34, T:0.30
Consensus pattern (55 bp):
GGGTAGGCCACACGAGCGTGTGTCATGGCCGTGTTTTAAAATCAGTGTTGTCCAT
Found at i:69256130 original size:39 final size:39
Alignment explanation
Indices: 69256076--69256152 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
69256066 TTTGTGCCGG
69256076 TAGACTCATAACTGATAATGTGTTGTTGACGTATGAGGC
1 TAGACTCATAACTGATAATGTGTTGTTGACGTATGAGGC
*
69256115 TAGACTCATAACTGATAATGTGTTGTTGGCGTATGAGG
1 TAGACTCATAACTGATAATGTGTTGTTGACGTATGAGG
69256153 TTCTCCATTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (39 bp):
TAGACTCATAACTGATAATGTGTTGTTGACGTATGAGGC
Found at i:69259590 original size:17 final size:17
Alignment explanation
Indices: 69259568--69259600 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
69259558 TAGGATTAGG
*
69259568 GCCACATGGGCATGTGA
1 GCCACATGGCCATGTGA
69259585 GCCACATGGCCATGTG
1 GCCACATGGCCATGTG
69259601 CTACTGTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (17 bp):
GCCACATGGCCATGTGA
Found at i:69262715 original size:59 final size:60
Alignment explanation
Indices: 69262613--69262733 Score: 165
Period size: 59 Copynumber: 2.0 Consensus size: 60
69262603 AGTATTCTAA
* * *
69262613 GAATCGAACCCAAAAGAGTCGGCGATTTAATGATTTATTCTCGACAAGCATGCAATGAAG
1 GAATCGAACCCAAAAGAGTCAGCGATTTAATAATTCATTCTCGACAAGCATGCAATGAAG
* * *
69262673 GAATCGAA-CTAAAATGAGTCAGC-ATTTAATAATTCCTTCTCGACAAGCATGGAATGAAG
1 GAATCGAACCCAAAA-GAGTCAGCGATTTAATAATTCATTCTCGACAAGCATGCAATGAAG
69262732 GA
1 GA
69262734 GTCTAAATAG
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
59 39 0.72
60 15 0.28
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (60 bp):
GAATCGAACCCAAAAGAGTCAGCGATTTAATAATTCATTCTCGACAAGCATGCAATGAAG
Found at i:69263576 original size:32 final size:30
Alignment explanation
Indices: 69263540--69263598 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
69263530 CTAAACCCCA
69263540 AAAAATGA-AAAAGAAAACCGTAAAACTAAGCT
1 AAAAA-GATAAAAGAAAACC-T-AAACTAAGCT
*
69263572 AAAAAGATGAAAGAAAACCTAAACTAA
1 AAAAAGATAAAAGAAAACCTAAACTAA
69263599 AGCTCTCCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 7 0.28
31 3 0.12
32 15 0.60
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.12
Consensus pattern (30 bp):
AAAAAGATAAAAGAAAACCTAAACTAAGCT
Found at i:69264099 original size:10 final size:11
Alignment explanation
Indices: 69264084--69264108 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
69264074 AAAAACTAAC
69264084 TAAAAACACGA
1 TAAAAACACGA
69264095 TAAAAACACGA
1 TAAAAACACGA
69264106 TAA
1 TAA
69264109 TTGCTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.16, G:0.08, T:0.12
Consensus pattern (11 bp):
TAAAAACACGA
Found at i:69265028 original size:31 final size:32
Alignment explanation
Indices: 69264972--69265031 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
69264962 AACAGTCCAT
*
69264972 TGACTTAAAATAAAAACTTTCAAATAGTTTAG
1 TGACTTAAAATAAAAACTTTAAAATAGTTTAG
* *
69265004 TGACTT-AAATGAATACTTTAAAATAGTT
1 TGACTTAAAATAAAAACTTTAAAATAGTT
69265032 CAATAACCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 19 0.76
32 6 0.24
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (32 bp):
TGACTTAAAATAAAAACTTTAAAATAGTTTAG
Found at i:69271173 original size:189 final size:189
Alignment explanation
Indices: 69270853--69271227 Score: 723
Period size: 189 Copynumber: 2.0 Consensus size: 189
69270843 CTATACTTTC
*
69270853 GATTCATTCATCATATTCACTTTTTATATCGATTCTATAGTGTTTCTGAAAATTATGAGGAACCA
1 GATTCATTCATCATATTCACTTTTTATATCGATTCTATAGTGTTTCTGAAAACTATGAGGAACCA
69270918 ATCCCTCTATGGAGGAATAGCGAGTGAAGGTATGAGCTATTAACCCTAGGCTTGATGACCCTAGG
66 ATCCCTCTATGGAGGAATAGCGAGTGAAGGTATGAGCTATTAACCCTAGGCTTGATGACCCTAGG
69270983 AAGTCATCAAGGTGGGAATTAACCCATAATTGGTATGGCTTATTCGTGAACACCTTTAT
131 AAGTCATCAAGGTGGGAATTAACCCATAATTGGTATGGCTTATTCGTGAACACCTTTAT
69271042 GATTCATTCATCATATTCACTTTTTATATCGATTCTATAGTGTTTCTGAAAACTATGAGGAACCA
1 GATTCATTCATCATATTCACTTTTTATATCGATTCTATAGTGTTTCTGAAAACTATGAGGAACCA
* *
69271107 ATCCCTCTATGGAGGATTAGGGAGTGAAGGTATGAGCTATTAACCCTAGGCTTGATGACCCTAGG
66 ATCCCTCTATGGAGGAATAGCGAGTGAAGGTATGAGCTATTAACCCTAGGCTTGATGACCCTAGG
69271172 AAGTCATCAAGGTGGGAATTAACCCATAATTGGTATGGCTTATTCGTGAACACCTT
131 AAGTCATCAAGGTGGGAATTAACCCATAATTGGTATGGCTTATTCGTGAACACCTT
69271228 CACCCTAAGC
Statistics
Matches: 183, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
189 183 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (189 bp):
GATTCATTCATCATATTCACTTTTTATATCGATTCTATAGTGTTTCTGAAAACTATGAGGAACCA
ATCCCTCTATGGAGGAATAGCGAGTGAAGGTATGAGCTATTAACCCTAGGCTTGATGACCCTAGG
AAGTCATCAAGGTGGGAATTAACCCATAATTGGTATGGCTTATTCGTGAACACCTTTAT
Found at i:69278246 original size:31 final size:32
Alignment explanation
Indices: 69278211--69278270 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
69278201 ATGGTTATTG
*
69278211 AACTATTTTAAAGTATTCA-TTTAAGTCACTA
1 AACTATTTGAAAGTATTCATTTTAAGTCACTA
* *
69278242 AACTATTTGAAAGTTTTTATTTTAAGTCA
1 AACTATTTGAAAGTATTCATTTTAAGTCA
69278271 ATGGACTGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 16 0.64
32 9 0.36
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (32 bp):
AACTATTTGAAAGTATTCATTTTAAGTCACTA
Found at i:69280561 original size:59 final size:59
Alignment explanation
Indices: 69280498--69280616 Score: 159
Period size: 59 Copynumber: 2.0 Consensus size: 59
69280488 AGTGAGTAGC
* * *
69280498 TAGTTAGACTCCTTCATTCCATGCTTGTCGAGAAGGAATTATTAAAT-GCTGACTCATTT
1 TAGTTAGACTCCTTCATTCCATGCTTGTCGAGAAGAAATCATTAAATCGCCGACTC-TTT
* * * *
69280557 TAGTTCGATTCCTTCATTGCATGCTTGTCGAGAATAAATCATTAAATCGCCGACTCTTT
1 TAGTTAGACTCCTTCATTCCATGCTTGTCGAGAAGAAATCATTAAATCGCCGACTCTTT
69280616 T
1 T
69280617 GGGTTCGATT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
59 45 0.87
60 7 0.13
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (59 bp):
TAGTTAGACTCCTTCATTCCATGCTTGTCGAGAAGAAATCATTAAATCGCCGACTCTTT
Found at i:69282412 original size:927 final size:929
Alignment explanation
Indices: 69280586--69282414 Score: 3216
Period size: 927 Copynumber: 2.0 Consensus size: 929
69280576 CATGCTTGTC
*
69280586 GAGAATAAATCATTAAATCGCCGACTCTTTTGGGTTCGATTCTTAGAATACTAAAGTGTTCCATT
1 GAGAATAAATCATTAAATCGCCGACTCTTTTGGGTTCAATTCTTAGAATACTAAAGTGTTCCATT
* * *
69280651 AAACATTATAAATATTACAATTGACATGTTACACTTGCAGACATCACACCTAGTTATTCTGATTT
66 AAACATTATAAATATTACAATTGACATATCACACTTGCAAACATCACACCTAGTTATTCTGATTT
** *
69280716 TTTTGTCATATTAGTGTTGATTCTCTCTGCCCTGGTGTTTGCACACCGATGGCGAAAGCAGTCAA
131 TTTTGTCATATTAGTGTTGATTCTCTCTGCCCTAATGTTTGCACACCGATGGCGAAAGCAATCAA
* *
69280781 ATATTGTACTAAAAATTCTTAAATGAAATTATAAAAATTTTAGGATGACTAAAGGAGAAGTTAGC
196 ATATTGTACTAAAAATTCTTAAATGAAATTATAAAAATTTTAGGATGACTAAAAGAAAAGTTAGC
* *
69280846 ATATTTGAACCAAATGAGAGCCAAGGCCCCAACCTATTCCTTTGGATTCACCCTTATAAACATGT
261 ATATTTGAACCAAATGAGAGCCAAGGCCCCAACCTATTCATTTAGATTCACCCTTATAAACATGT
69280911 AATTTAGTTCCTTCTTGATTTTGAGCTTTTGGTGTTGGTTCGAATGGAACTTATCACTCTTAAAA
326 AATTTAGTTCCTTCTTGATTTTGAGCTTTTGGTGTTGGTTCGAATGGAACTTATCACTCTTAAAA
69280976 ATGGGCACAATACTTAGTGAACAATATTTCATTCAAAACCCCTCAAGAATTTTTTAGATATAAAT
391 ATGGGCACAATACTTAGTGAACAATATTTCATTCAAAACCCCTCAAGAATTTTTTAGATATAAAT
* *
69281041 TTCTTGCAATAGTACTAACATATGTTAAGATTTGTCCTTATATATATTAATGCTAATGACATAAG
456 TTCTTGCAATAGTACTAACATATGTCAAGATTTGTCCTTATATATATTAATGCTAATAACATAAG
69281106 ACGTCTCACCCATATCTTTTATATTGAAGTTTTGATAGAGATGTTGAAACCAAATTTTTGAATAA
521 ACGTCTCACCCATATCTTTTATATTGAAGTTTTGATAGAGATGTTGAAACCAAATTTTTGAATAA
* *
69281171 AAATTAGCCTGATAATTTTTTGAAAATTCTTGAAAATTTAATTATGTAAAATTAACCTTTATAGA
586 AAATTAGCCTGATAAGTTTTTGAAAATTCTTGAAAATTTAATTATGTAAAATTAACCTTTATAAA
69281236 TCGCCCCCTTTATTTTCATGTAGCCTTAAGGGTTTTTTAAAGCCAATTTTGTTTTCTCTAATCCT
651 TCGCCCCCTTTATTTTCATGTAGCCTTAAGGGTTTTTTAAAGCCAATTTTGTTTTCTCTAATCCT
* * **
69281301 ATAGTTGTGTACAGGACATTATTGATATACATTTCACGTGGGCTACGAGTTATGCAAATTCAAGT
716 ATAGTTGTGTAAAGGACATTATTGATATACATTTCACGTAGGCTACGAGTTATAAAAATTCAAGT
*
69281366 ATTGACCATGTTCAACCAAAGCCAATGGTTACAACTGGCCAATGGTCCCCACCTGAGAGGGGTTG
781 ATTGACCATGTTCAACCAAAGCCAATGGTCACAACTGGCCAATGGTCCCCACCTGAGAGGGGTTG
69281431 GATTAAACTTAATACAACCCAATAGTAGCAATGGTTAGATTGGAGGGATACTCAAATCGTCGACT
846 GATTAAACTTAATACAACCCAATAGTAGCAATGGTTAGATTGGAGGGATACTCAAATCGTCGACT
69281496 CTTTTGGGTTCAATTCTTG
911 CTTTTGGGTTCAATTCTTG
* * * *
69281515 GAGAATGAATCATTAAATCGTCGACTCTTTTGGGTTCAATTCTTGGAATACTCAAGTGTTCCATT
1 GAGAATAAATCATTAAATCGCCGACTCTTTTGGGTTCAATTCTTAGAATACTAAAGTGTTCCATT
* *
69281580 GAACATTATAAATATTACAATTGACATATCACACTTGCAAACATCACACCTAGTTATTTTGA-TT
66 AAACATTATAAATATTACAATTGACATATCACACTTGCAAACATCACACCTAGTTATTCTGATTT
69281644 TTTTGTCATATTAGTGTTGATTCTCTCTGCCCTAATGTTTGCACACCGATGGC-AGAAGCAATCA
131 TTTTGTCATATTAGTGTTGATTCTCTCTGCCCTAATGTTTGCACACCGATGGCGA-AAGCAATCA
*
69281708 AATATTGTATTAAAAATTCTTAAATGAAATTATAAAAATTTTAGGATGACTAAAAGAAAAGTTAG
195 AATATTGTACTAAAAATTCTTAAATGAAATTATAAAAATTTTAGGATGACTAAAAGAAAAGTTAG
69281773 CATATTTGAACCAAATGAGAGCCAAGGCCCCAACCTATTCATTTAGATTCACCC-TATAAACATG
260 CATATTTGAACCAAATGAGAGCCAAGGCCCCAACCTATTCATTTAGATTCACCCTTATAAACATG
* *
69281837 TAATTTAGTTCTTTTTTGATTTTGAGCTTTTGGTGTTGGTTCGAATGGAACTTATCACTCTTAAA
325 TAATTTAGTTCCTTCTTGATTTTGAGCTTTTGGTGTTGGTTCGAATGGAACTTATCACTCTTAAA
*
69281902 AATGGGTACAATACTTAGTGAACAATATTTCATTCAAAA-CCCTCAAGAATTTTTTAGATATAAA
390 AATGGGCACAATACTTAGTGAACAATATTTCATTCAAAACCCCTCAAGAATTTTTTAGATATAAA
**
69281966 TTTCTTGCAATAGTACTAACATATGTCAAGATTTGTCCTTATATATATTAATGCTAATAATGTAA
455 TTTCTTGCAATAGTACTAACATATGTCAAGATTTGTCCTTATATATATTAATGCTAATAACATAA
*
69282031 GACGTCTCACCCATATCTTTTATATTGAAGTTTTGATAGATATGTTGAAACCAAATTTTTGAATA
520 GACGTCTCACCCATATCTTTTATATTGAAGTTTTGATAGAGATGTTGAAACCAAATTTTTGAATA
*
69282096 AAAATTAGCCTGATAAGTTTTTGAAAATTCTTGAAAATTTAATTATGTAAAGTTAACCTTTATAA
585 AAAATTAGCCTGATAAGTTTTTGAAAATTCTTGAAAATTTAATTATGTAAAATTAACCTTTATAA
*
69282161 ATCGCCCCCTTTATTTTCATGTAGCCTTAAGGGTTTTTTAAAGCCAATTTTGTTTTTTCTAATGC
650 ATCGCCCCCTTTATTTTCATGTAGCCTTAAGGGTTTTTTAAAGCCAATTTTGTTTTCTCTAAT-C
* * * *
69282226 CTATAGTTGTGTAAAGGACATTGTTGATATACGTTTCATGTAGGCTAGGAGTTATAAAAATTCAA
714 CTATAGTTGTGTAAAGGACATTATTGATATACATTTCACGTAGGCTACGAGTTATAAAAATTCAA
* *
69282291 GTATTGACCATGTTCAACCAAAGCCAATGGTCACGACTGGCCAATGGTCCCCACCTGATAGGGGT
779 GTATTGACCATGTTCAACCAAAGCCAATGGTCACAACTGGCCAATGGTCCCCACCTGAGAGGGGT
* * *
69282356 TGGATTAAACTTAATAGAACCCAATAGTAGCAATGGTTCGATTGGAGGGGTACTCAAAT
844 TGGATTAAACTTAATACAACCCAATAGTAGCAATGGTTAGATTGGAGGGATACTCAAAT
69282415 ATTCAAATGT
Statistics
Matches: 854, Mismatches: 44, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
926 274 0.32
927 288 0.34
928 175 0.20
929 117 0.14
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (929 bp):
GAGAATAAATCATTAAATCGCCGACTCTTTTGGGTTCAATTCTTAGAATACTAAAGTGTTCCATT
AAACATTATAAATATTACAATTGACATATCACACTTGCAAACATCACACCTAGTTATTCTGATTT
TTTTGTCATATTAGTGTTGATTCTCTCTGCCCTAATGTTTGCACACCGATGGCGAAAGCAATCAA
ATATTGTACTAAAAATTCTTAAATGAAATTATAAAAATTTTAGGATGACTAAAAGAAAAGTTAGC
ATATTTGAACCAAATGAGAGCCAAGGCCCCAACCTATTCATTTAGATTCACCCTTATAAACATGT
AATTTAGTTCCTTCTTGATTTTGAGCTTTTGGTGTTGGTTCGAATGGAACTTATCACTCTTAAAA
ATGGGCACAATACTTAGTGAACAATATTTCATTCAAAACCCCTCAAGAATTTTTTAGATATAAAT
TTCTTGCAATAGTACTAACATATGTCAAGATTTGTCCTTATATATATTAATGCTAATAACATAAG
ACGTCTCACCCATATCTTTTATATTGAAGTTTTGATAGAGATGTTGAAACCAAATTTTTGAATAA
AAATTAGCCTGATAAGTTTTTGAAAATTCTTGAAAATTTAATTATGTAAAATTAACCTTTATAAA
TCGCCCCCTTTATTTTCATGTAGCCTTAAGGGTTTTTTAAAGCCAATTTTGTTTTCTCTAATCCT
ATAGTTGTGTAAAGGACATTATTGATATACATTTCACGTAGGCTACGAGTTATAAAAATTCAAGT
ATTGACCATGTTCAACCAAAGCCAATGGTCACAACTGGCCAATGGTCCCCACCTGAGAGGGGTTG
GATTAAACTTAATACAACCCAATAGTAGCAATGGTTAGATTGGAGGGATACTCAAATCGTCGACT
CTTTTGGGTTCAATTCTTG
Found at i:69284213 original size:22 final size:21
Alignment explanation
Indices: 69284178--69284221 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
69284168 AAAGGATATC
69284178 TACAAATTAAATCTCCAAGAT
1 TACAAATTAAATCTCCAAGAT
* *
69284199 TACAAGATTATATCTTCAAGAT
1 TACAA-ATTAAATCTCCAAGAT
69284221 T
1 T
69284222 GCATATCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (21 bp):
TACAAATTAAATCTCCAAGAT
Found at i:69284240 original size:19 final size:19
Alignment explanation
Indices: 69284216--69284266 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
69284206 TTATATCTTC
69284216 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
69284235 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
*
69284254 AAAATTGCATATC
1 AAGATTGCATATC
69284267 CTTAAAGGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:69287733 original size:25 final size:25
Alignment explanation
Indices: 69287699--69287762 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
69287689 GGAGGAGAGC
69287699 TTTAGTTTAGGTTTTCTTTCAACTA
1 TTTAGTTTAGGTTTTCTTTCAACTA
* *
69287724 TTTAGTTTAGGTTTTCTTTCATCTC
1 TTTAGTTTAGGTTTTCTTTCAACTA
*
69287749 TTTAGCTTA-GTTTT
1 TTTAGTTTAGGTTTT
69287763 AAGGTTTTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
24 5 0.14
25 31 0.86
ACGTcount: A:0.16, C:0.12, G:0.12, T:0.59
Consensus pattern (25 bp):
TTTAGTTTAGGTTTTCTTTCAACTA
Found at i:69288662 original size:60 final size:59
Alignment explanation
Indices: 69288583--69288696 Score: 174
Period size: 60 Copynumber: 1.9 Consensus size: 59
69288573 TAGCTAGTTA
*
69288583 AAATCCTTATTCCATGCTTGTCGAAAAGGAATCATTAAATTGTTGACTCCTTTGGGTTC
1 AAATCCTTATTCCATGCTTGTCGAAAAGGAATCATTAAATTGCTGACTCCTTTGGGTTC
* * * *
69288642 AAATCCTTCATTGCATGCTTGTCGAGAATGAATCATTAAATTGCTGACTTCTTTG
1 AAATCCTT-ATTCCATGCTTGTCGAAAAGGAATCATTAAATTGCTGACTCCTTTG
69288697 AGTTTGATCC
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
59 8 0.16
60 41 0.84
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (59 bp):
AAATCCTTATTCCATGCTTGTCGAAAAGGAATCATTAAATTGCTGACTCCTTTGGGTTC
Found at i:69292128 original size:73 final size:73
Alignment explanation
Indices: 69292041--69292187 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
69292031 AAAATTATAT
69292041 GTTCTAATAATATCTGTTCTTTTGGTACAATGTTTAAAATTAACTATACCCCTTCCCAATTTATA
1 GTTCTAATAATATCTGTTCTTTTGGTACAATGTTTAAAATTAACTATACCCCTTCCCAATTTATA
69292106 AATAAGAG
66 AATAAGAG
69292114 GTTCTAATAATATCTGTTCTTTTGGTACAATGTTTAAAATTAACTATACCCCTTCCCAATTTATA
1 GTTCTAATAATATCTGTTCTTTTGGTACAATGTTTAAAATTAACTATACCCCTTCCCAATTTATA
69292179 AATAAGAG
66 AATAAGAG
69292187 G
1 G
69292188 ATAATGCGCT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.39
Consensus pattern (73 bp):
GTTCTAATAATATCTGTTCTTTTGGTACAATGTTTAAAATTAACTATACCCCTTCCCAATTTATA
AATAAGAG
Found at i:69292636 original size:17 final size:17
Alignment explanation
Indices: 69292591--69292639 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
69292581 TATGATAATG
* *
69292591 TAATATATTTATTTATTT
1 TAAT-TATTTATTAAGTT
*
69292609 TAAATTTTTTATTAAGTT
1 T-AATTATTTATTAAGTT
69292627 TAATTATTTATTA
1 TAATTATTTATTA
69292640 TGTTCTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 11 0.42
18 12 0.46
19 3 0.12
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
TAATTATTTATTAAGTT
Found at i:69292659 original size:36 final size:36
Alignment explanation
Indices: 69292591--69292676 Score: 88
Period size: 36 Copynumber: 2.4 Consensus size: 36
69292581 TATGATAATG
* *
69292591 TAATATATTTATTTATTTTAAATTTTTTATTAAGTT
1 TAATATATTTATTTATTTTAAATTTATAATTAAGTT
*
69292627 TAAT-TATTTA-TTATGTTCTAAATTTATAATTAA-TA
1 TAATATATTTATTTAT-TT-TAAATTTATAATTAAGTT
*
69292662 TAAAATTATTTATTT
1 TAATA-TATTTATTT
69292677 CTCATGTATT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
34 4 0.10
35 12 0.29
36 17 0.41
37 6 0.15
38 2 0.05
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.59
Consensus pattern (36 bp):
TAATATATTTATTTATTTTAAATTTATAATTAAGTT
Found at i:69299584 original size:35 final size:36
Alignment explanation
Indices: 69299456--69299588 Score: 153
Period size: 35 Copynumber: 3.6 Consensus size: 36
69299446 TTCTCATTGA
** *
69299456 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* **
69299491 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
*
69299531 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
69299566 AATACCATACCTACATTTCACAA
1 AATACCATACCTACATTTCACAA
69299589 TTTGCAAAAG
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
35 54 0.64
39 3 0.04
40 27 0.32
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:69304102 original size:38 final size:38
Alignment explanation
Indices: 69304059--69304134 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
69304049 TTCATCCTTT
69304059 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
69304097 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
69304135 GGAGTTCTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:69305417 original size:40 final size:40
Alignment explanation
Indices: 69305323--69305467 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
69305313 TACTCGAATG
*
69305323 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
69305364 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
69305404 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
69305444 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
69305468 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:69313408 original size:79 final size:81
Alignment explanation
Indices: 69313272--69313456 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
69313262 TTGAATGATG
*
69313272 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
69313336 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
69313351 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
69313413 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
69313431 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69313457 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:69313470 original size:40 final size:40
Alignment explanation
Indices: 69313273--69313456 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
69313263 TGAATGATGT
* * * *
69313273 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
69313313 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
69313353 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
69313391 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
69313432 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
69313457 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:69313478 original size:79 final size:79
Alignment explanation
Indices: 69313325--69313489 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
69313315 GGACTAAGAT
* **
69313325 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
69313390 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
69313404 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
69313467 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
69313483 CCGAAGG
1 CCGAAGG
69313490 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:69328764 original size:11 final size:11
Alignment explanation
Indices: 69328748--69328779 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
69328738 GTTTTGTCCC
69328748 TTTTTGGCTCA
1 TTTTTGGCTCA
*
69328759 TTTTTGGCTCG
1 TTTTTGGCTCA
69328770 TTTTTGGCTC
1 TTTTTGGCTC
69328780 CTGGTGCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.03, C:0.19, G:0.22, T:0.56
Consensus pattern (11 bp):
TTTTTGGCTCA
Found at i:69337576 original size:25 final size:26
Alignment explanation
Indices: 69337546--69337600 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
69337536 AGACAAAATA
* *
69337546 TAATCCTAACTTCTTAACTTAAG-TC
1 TAATCCAAACTTCTAAACTTAAGTTC
*
69337571 TAATCCAAATTTCTAAACTTAAGTTC
1 TAATCCAAACTTCTAAACTTAAGTTC
69337597 TAAT
1 TAAT
69337601 TTTGGTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.40
Consensus pattern (26 bp):
TAATCCAAACTTCTAAACTTAAGTTC
Found at i:69337801 original size:14 final size:14
Alignment explanation
Indices: 69337782--69337809 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
69337772 CATTTAGCCA
69337782 AACCAAACTGGCCC
1 AACCAAACTGGCCC
69337796 AACCAAACTGGCCC
1 AACCAAACTGGCCC
69337810 GGTGATTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.43, G:0.14, T:0.07
Consensus pattern (14 bp):
AACCAAACTGGCCC
Found at i:69339149 original size:22 final size:22
Alignment explanation
Indices: 69339101--69339146 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
69339091 TTTGTATGAC
*
69339101 ATTATAAGCATCATAATAATCT
1 ATTATAAGAATCATAATAATCT
69339123 ATTATAAGAAT-ATATATAAT-T
1 ATTATAAGAATCATA-ATAATCT
69339144 ATT
1 ATT
69339147 TATTTGTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (22 bp):
ATTATAAGAATCATAATAATCT
Found at i:69342287 original size:10 final size:10
Alignment explanation
Indices: 69342272--69342305 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
69342262 AATTTTAGCT
69342272 TTTATCTTTA
1 TTTATCTTTA
*
69342282 TTTATCCTTA
1 TTTATCTTTA
69342292 TTTATCTTTA
1 TTTATCTTTA
69342302 TTTA
1 TTTA
69342306 ATTGAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:69349749 original size:5 final size:5
Alignment explanation
Indices: 69349741--69349768 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
69349731 TCAATCCAAT
69349741 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
69349769 CATCATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:69351014 original size:13 final size:13
Alignment explanation
Indices: 69350996--69351020 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69350986 TCTGCAGGGA
69350996 CACGCCCGTGTGC
1 CACGCCCGTGTGC
69351009 CACGCCCGTGTG
1 CACGCCCGTGTG
69351021 TGATTACTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.44, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGC
Found at i:69352970 original size:5 final size:6
Alignment explanation
Indices: 69352954--69352978 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
69352944 TTAAATCTGC
69352954 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
69352979 TAGTTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:69355287 original size:215 final size:215
Alignment explanation
Indices: 69354916--69355341 Score: 746
Period size: 215 Copynumber: 2.0 Consensus size: 215
69354906 GGTTTTTGTT
*
69354916 TTAACTAACTAATTATCTAAACTAAGAACTCATAGAGAATAGAATTGGGGAATTGCTTTTGGGGA
1 TTAACTAACTAATTATCTAAACTAAGAACTCATAGAGAATAGAATTGGGGAATTGCTTTTAGGGA
69354981 AAATCCATTGACTTAAGACAATACCTAAAGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCT
66 AAATCCATTGACTTAAGACAATACCTAAAGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCT
*
69355046 CTAAATCGGACGATTTATTCACTTAACTTATTCCGTAGAGATCCCTAAGTTATGTTATTATCCCT
131 CCAAATCGGACGATTTATTCACTTAACTTATTCCGTAGAGATCCCTAAGTTATGTTATTATCCCT
69355111 ATACAAGACTAATAACATCC
196 ATACAAGACTAATAACATCC
*
69355131 TTAACTAACTAATTATCTAAACTAAGAACTCATAGAGAATAGAATTGGGGAATTGTTTTTAGGGA
1 TTAACTAACTAATTATCTAAACTAAGAACTCATAGAGAATAGAATTGGGGAATTGCTTTTAGGGA
* * *
69355196 AAATCGATTGACTTAAGACAATACCT-AAGAAAAAATCCACTTAGACTGTACTTGTTATTTTGGC
66 AAATCCATTGACTTAAGACAATACCTAAAG-AAAAATCCACCTAGACTGTACTTGTTATTCTGGC
* *
69355260 TCCGAATCGGACGATTTATTCACTTAACTTATTCTGTAGAGATCCCTAAGTTATGTTATTATCCC
130 TCCAAATCGGACGATTTATTCACTTAACTTATTCCGTAGAGATCCCTAAGTTATGTTATTATCCC
* *
69355325 TGTTCAAGACTAATAAC
195 TATACAAGACTAATAAC
69355342 GTCTAATCCC
Statistics
Matches: 200, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
214 3 0.01
215 197 0.99
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (215 bp):
TTAACTAACTAATTATCTAAACTAAGAACTCATAGAGAATAGAATTGGGGAATTGCTTTTAGGGA
AAATCCATTGACTTAAGACAATACCTAAAGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCT
CCAAATCGGACGATTTATTCACTTAACTTATTCCGTAGAGATCCCTAAGTTATGTTATTATCCCT
ATACAAGACTAATAACATCC
Found at i:69355984 original size:13 final size:13
Alignment explanation
Indices: 69355966--69355990 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69355956 TCTGCAGGGA
69355966 CACGCCCGTGTGC
1 CACGCCCGTGTGC
69355979 CACGCCCGTGTG
1 CACGCCCGTGTG
69355991 TGATTACTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.44, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGC
Found at i:69357940 original size:5 final size:6
Alignment explanation
Indices: 69357924--69357948 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
69357914 TTAAATCTGC
69357924 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
69357949 TAGTTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:69364229 original size:5 final size:6
Alignment explanation
Indices: 69364216--69364262 Score: 76
Period size: 6 Copynumber: 7.5 Consensus size: 6
69364206 ATAATTTAAT
69364216 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
69364263 ATATATAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 33 0.85
8 6 0.15
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:69364245 original size:26 final size:25
Alignment explanation
Indices: 69364216--69364265 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
69364206 ATAATTTAAT
*
69364216 AAATAAAAATAAAAATCTAAAAATAA
1 AAATAAAAATAAAAAT-AAAAAATAA
69364242 AAATAAAAATAAAAATAAAAAATA
1 AAATAAAAATAAAAATAAAAAATA
69364266 TATAATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (25 bp):
AAATAAAAATAAAAATAAAAAATAA
Found at i:69364301 original size:9 final size:9
Alignment explanation
Indices: 69364289--69364331 Score: 77
Period size: 9 Copynumber: 4.8 Consensus size: 9
69364279 AAATAATTTA
69364289 GTTAATTCG
1 GTTAATTCG
69364298 GTTAATTCG
1 GTTAATTCG
69364307 GTTAATTCG
1 GTTAATTCG
*
69364316 ATTAATTCG
1 GTTAATTCG
69364325 GTTAATT
1 GTTAATT
69364332 TTATACTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.47
Consensus pattern (9 bp):
GTTAATTCG
Found at i:69369088 original size:12 final size:12
Alignment explanation
Indices: 69369071--69369096 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69369061 TAGAGTGGCT
69369071 TAATGAGCCATG
1 TAATGAGCCATG
69369083 TAATGAGCCATG
1 TAATGAGCCATG
69369095 TA
1 TA
69369097 CATAGGTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (12 bp):
TAATGAGCCATG
Found at i:69370649 original size:63 final size:63
Alignment explanation
Indices: 69370582--69370712 Score: 154
Period size: 63 Copynumber: 2.1 Consensus size: 63
69370572 CAATGTTTGG
* * * *
69370582 CATTAAGGACCATATGGGCCAAGGAAACGGGCGTGTGTCCAGGCCGTATGACTCACTACTTGC
1 CATTAAGGACCACATGGACCAAGGAAACAGACGTGTGTCCAGGCCGTATGACTCACTACTTGC
* * * * * * **
69370645 CATTAAGGACCACATGGACCAGGGACATAGATGTGTGTCCAGGCTGTGTGACTCACTGTTTGC
1 CATTAAGGACCACATGGACCAAGGAAACAGACGTGTGTCCAGGCCGTATGACTCACTACTTGC
69370708 CATTA
1 CATTA
69370713 CATGAGCCAG
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (63 bp):
CATTAAGGACCACATGGACCAAGGAAACAGACGTGTGTCCAGGCCGTATGACTCACTACTTGC
Found at i:69373805 original size:21 final size:21
Alignment explanation
Indices: 69373768--69373814 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
69373758 AAGCCAGTTA
69373768 TAAAA-GTCCATAAACAGTCCT
1 TAAAATGTCCATAAACAG-CCT
*
69373789 TAAAATGTCCAT-TACAGCCT
1 TAAAATGTCCATAAACAGCCT
*
69373809 AAAAAT
1 TAAAAT
69373815 ATCAAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 8 0.35
21 9 0.39
22 6 0.26
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.26
Consensus pattern (21 bp):
TAAAATGTCCATAAACAGCCT
Found at i:69375893 original size:43 final size:43
Alignment explanation
Indices: 69375767--69375928 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 43
69375757 TAATATCTGT
* *
69375767 TTTCGTGTAAGACCACGTCTGGGACGTTGGAATCGA-ATTATGA
1 TTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA
* * * * *
69375810 TTTACATGTAAGACCATGTTTGGGACATTGGTATTG-TATTTGA
1 TTT-CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGA
* **
69375853 TTTCGTGTAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGA
1 TTTCATGTAAGACCACGTCTGGGAC-GTTGGCATCGATATTTGA
* *
69375896 TTACATGTAGGACCACGTCTGGGACGTTGGCAT
1 TTTCATGTAAGACCACGTCTGGGACGTTGGCAT
69375929 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 26 0.27
43 42 0.43
44 29 0.30
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.34
Consensus pattern (43 bp):
TTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGA
Found at i:69379025 original size:159 final size:159
Alignment explanation
Indices: 69378768--69379089 Score: 644
Period size: 159 Copynumber: 2.0 Consensus size: 159
69378758 TATTGTGCTA
69378768 GTGAGGATGAAATATGGCCTACCACATTTCCATACATGTAATGTGACCAAATCACATAGGATGGA
1 GTGAGGATGAAATATGGCCTACCACATTTCCATACATGTAATGTGACCAAATCACATAGGATGGA
69378833 TAGGTCATAATTGGCAATGAGTAATAATAATGAGCCAATCTTAAAAGTATTTTAAGTCATAGAAA
66 TAGGTCATAATTGGCAATGAGTAATAATAATGAGCCAATCTTAAAAGTATTTTAAGTCATAGAAA
69378898 TCCTTAATACAAAGGGAATAACCTAGCAT
131 TCCTTAATACAAAGGGAATAACCTAGCAT
69378927 GTGAGGATGAAATATGGCCTACCACATTTCCATACATGTAATGTGACCAAATCACATAGGATGGA
1 GTGAGGATGAAATATGGCCTACCACATTTCCATACATGTAATGTGACCAAATCACATAGGATGGA
69378992 TAGGTCATAATTGGCAATGAGTAATAATAATGAGCCAATCTTAAAAGTATTTTAAGTCATAGAAA
66 TAGGTCATAATTGGCAATGAGTAATAATAATGAGCCAATCTTAAAAGTATTTTAAGTCATAGAAA
69379057 TCCTTAATACAAAGGGAATAACCTAGCAT
131 TCCTTAATACAAAGGGAATAACCTAGCAT
69379086 GTGA
1 GTGA
69379090 AAACTGATGA
Statistics
Matches: 163, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
159 163 1.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (159 bp):
GTGAGGATGAAATATGGCCTACCACATTTCCATACATGTAATGTGACCAAATCACATAGGATGGA
TAGGTCATAATTGGCAATGAGTAATAATAATGAGCCAATCTTAAAAGTATTTTAAGTCATAGAAA
TCCTTAATACAAAGGGAATAACCTAGCAT
Found at i:69392065 original size:68 final size:68
Alignment explanation
Indices: 69391899--69392087 Score: 236
Period size: 68 Copynumber: 2.8 Consensus size: 68
69391889 GTAATATGAC
* * * * *
69391899 ATGCTTATAATAAATCAATACGGTAGCAATTAACATGCTTGTAGCAAATCAAT-AGGTAGCAATC
1 ATGCTTATAATAGATCAATACGGTAGCAATTAATATGCTTATAACAAATCAATAAGCTAGCAATC
69391963 AAT
66 AAT
* * * * * * *
69391966 ATACTTATAACAGATCAATACAGTAGCAATTAATATGCTTCTAACATATCAATAAGCTAGTAATT
1 ATGCTTATAATAGATCAATACGGTAGCAATTAATATGCTTATAACAAATCAATAAGCTAGCAATC
*
69392031 TAT
66 AAT
* *
69392034 ATGCTTAAAATAGATCAATATGGTAGCAATTAATATGCTTATAACAAATCAATA
1 ATGCTTATAATAGATCAATACGGTAGCAATTAATATGCTTATAACAAATCAATA
69392088 TATTAGCAAA
Statistics
Matches: 102, Mismatches: 19, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
67 45 0.44
68 57 0.56
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (68 bp):
ATGCTTATAATAGATCAATACGGTAGCAATTAATATGCTTATAACAAATCAATAAGCTAGCAATC
AAT
Found at i:69392088 original size:34 final size:34
Alignment explanation
Indices: 69391899--69392087 Score: 209
Period size: 34 Copynumber: 5.6 Consensus size: 34
69391889 GTAATATGAC
* *
69391899 ATGCTTATAATAAATCAATACGGTAGCAATTAAC
1 ATGCTTATAACAAATCAATACGGTAGCAATTAAT
* * *
69391933 ATGCTTGTAGCAAATCAATA-GGTAGCAATCAAT
1 ATGCTTATAACAAATCAATACGGTAGCAATTAAT
* * *
69391966 ATACTTATAACAGATCAATACAGTAGCAATTAAT
1 ATGCTTATAACAAATCAATACGGTAGCAATTAAT
* * * * * *
69392000 ATGCTTCTAACATATCAATAAGCTAGTAATTTAT
1 ATGCTTATAACAAATCAATACGGTAGCAATTAAT
* * * *
69392034 ATGCTTAAAATAGATCAATATGGTAGCAATTAAT
1 ATGCTTATAACAAATCAATACGGTAGCAATTAAT
69392068 ATGCTTATAACAAATCAATA
1 ATGCTTATAACAAATCAATA
69392088 TATTAGCAAA
Statistics
Matches: 124, Mismatches: 30, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
33 27 0.22
34 97 0.78
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (34 bp):
ATGCTTATAACAAATCAATACGGTAGCAATTAAT
Found at i:69393006 original size:21 final size:21
Alignment explanation
Indices: 69392981--69393030 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 21
69392971 GTTTTAATCC
69392981 AATAAAGTAAAAATAAAAAAT
1 AATAAAGTAAAAATAAAAAAT
* *
69393002 AAT-AAG-AAAGATGAAAAAT
1 AATAAAGTAAAAATAAAAAAT
*
69393021 -ATAATGTAAA
1 AATAAAGTAAA
69393031 GAAGAGGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
18 2 0.08
19 13 0.54
20 6 0.25
21 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.10, T:0.20
Consensus pattern (21 bp):
AATAAAGTAAAAATAAAAAAT
Found at i:69394836 original size:47 final size:46
Alignment explanation
Indices: 69394767--69394857 Score: 155
Period size: 47 Copynumber: 2.0 Consensus size: 46
69394757 CTCATAAAGC
* *
69394767 AAAGTGATTATATTGGTTAAATATCAAATCAAATCAAAATTAAAACA
1 AAAGTGATTATATTAGTCAAATATCAAATCAAATCAAAA-TAAAACA
69394814 AAAGTGATTATATTAGTCAAATATCAAATCAAATCAAAATAAAA
1 AAAGTGATTATATTAGTCAAATATCAAATCAAATCAAAATAAAA
69394858 TAATAAATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
46 5 0.12
47 37 0.88
ACGTcount: A:0.55, C:0.09, G:0.08, T:0.29
Consensus pattern (46 bp):
AAAGTGATTATATTAGTCAAATATCAAATCAAATCAAAATAAAACA
Found at i:69395447 original size:5 final size:5
Alignment explanation
Indices: 69395437--69395463 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
69395427 TTAAGGGTGT
69395437 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
69395464 AAGTTGAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:69396547 original size:30 final size:29
Alignment explanation
Indices: 69396458--69396548 Score: 80
Period size: 30 Copynumber: 3.0 Consensus size: 29
69396448 ACACATCAAT
*
69396458 AATTCTTTGTATTTTCATAAATTTT-AAATTT
1 AATTCTTT-TATTTT--TAAATTTTAAAATTC
* *
69396489 AA-TCTCTTTATTTTT-ATTTTTAGGAATTC
1 AATTCT-TTTATTTTTAAATTTTA-AAATTC
69396518 AATTCTTTTACTTTTTAAATTTTAAAATTC
1 AATTCTTTTA-TTTTTAAATTTTAAAATTC
69396548 A
1 A
69396549 GTTCCAATAA
Statistics
Matches: 49, Mismatches: 5, Indels: 13
0.73 0.07 0.19
Matches are distributed among these distances:
27 5 0.10
28 1 0.02
29 10 0.20
30 23 0.47
31 10 0.20
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.57
Consensus pattern (29 bp):
AATTCTTTTATTTTTAAATTTTAAAATTC
Found at i:69404746 original size:6 final size:6
Alignment explanation
Indices: 69404735--69404774 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
69404725 GAAAAAAGAA
*
69404735 AAAAAT AGAAAT AGCAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT A--AAAAT AAAAAT AAAAAT AAAAAT AA
69404775 TAAAAGTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 25 0.83
8 5 0.17
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:69404789 original size:19 final size:17
Alignment explanation
Indices: 69404755--69404821 Score: 59
Period size: 17 Copynumber: 4.0 Consensus size: 17
69404745 ATAGCAAAAT
69404755 AAAAATAAAA-ATA-AA
1 AAAAATAAAATATATAA
* *
69404770 AATAATAAAAGTGTATAA
1 AAAAATAAAA-TATATAA
*
69404788 AAAATTAAAATATATAA
1 AAAAATAAAATATATAA
*
69404805 AAAATTTAAAA-ATATAA
1 AAAA-ATAAAATATATAA
69404822 GTATAAGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
15 9 0.21
17 18 0.42
18 16 0.37
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (17 bp):
AAAAATAAAATATATAA
Found at i:69408814 original size:17 final size:17
Alignment explanation
Indices: 69408792--69408826 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
69408782 CTAATTAAAA
*
69408792 ATATTAGGGCAAAAATT
1 ATATTAAGGCAAAAATT
*
69408809 ATATTAAGGCAAGAATT
1 ATATTAAGGCAAAAATT
69408826 A
1 A
69408827 AGAACACATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.49, C:0.06, G:0.17, T:0.29
Consensus pattern (17 bp):
ATATTAAGGCAAAAATT
Found at i:69413642 original size:16 final size:16
Alignment explanation
Indices: 69413621--69413651 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69413611 TTCACTATTA
*
69413621 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
69413637 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
69413652 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:69416398 original size:4 final size:4
Alignment explanation
Indices: 69416389--69416424 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
69416379 GATTTATGCA
69416389 TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG
69416425 CAGTCAGATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:69418001 original size:37 final size:37
Alignment explanation
Indices: 69417955--69418066 Score: 105
Period size: 37 Copynumber: 3.2 Consensus size: 37
69417945 AAAAATAAAA
*
69417955 TTATTTTAATAGTTTAATATTAAATTCAATTTAATAT
1 TTATCTTAATAGTTTAATATTAAATTCAATTTAATAT
*
69417992 TTATCTTAATAG--T-AT-TT-TATT-AATTTAATA-
1 TTATCTTAATAGTTTAATATTAAATTCAATTTAATAT
***
69418022 TTAAAATAATTA-TATTAATATTAAATTCAATTTAATAT
1 TTATCTTAA-TAGT-TTAATATTAAATTCAATTTAATAT
69418060 TTATCTT
1 TTATCTT
69418067 GTAAATAAAC
Statistics
Matches: 57, Mismatches: 9, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
30 6 0.11
31 11 0.19
32 3 0.05
33 3 0.05
34 4 0.07
35 3 0.05
36 3 0.05
37 20 0.35
38 4 0.07
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (37 bp):
TTATCTTAATAGTTTAATATTAAATTCAATTTAATAT
Found at i:69420389 original size:45 final size:43
Alignment explanation
Indices: 69420340--69420544 Score: 209
Period size: 45 Copynumber: 4.6 Consensus size: 43
69420330 CCGAAGTGAG
**
69420340 GCCATAGTATCTTTCAACTATGGTCTTATTTGTATTGGTTTTAAT
1 GCCATAGTATCTTTCAACTATGGTCTTATTCAT-TTGG-TTTAAT
* * *
69420385 GCCATAGTATCTTTCAATTATGGTCTTATACATTTCCGGTATAAT
1 GCCATAGTATCTTTCAACTATGGTCTTATTCATTT--GGTTTAAT
*
69420430 GTCATAGTATCTTTCAACTATGG-CTTTATTCATTCTGGTTTAAT
1 GCCATAGTATCTTTCAACTATGGTC-TTATTCATT-TGGTTTAAT
* *
69420474 GTCATAGTATCTTTCAACTATGGTCTT-TCTCATTTCGGGTATAAT
1 GCCATAGTATCTTTCAACTATGGTCTTAT-TCATTT--GGTTTAAT
* *
69420519 GTCATGGTATCTTTCAACCT-TGGTCT
1 GCCATAGTATCTTTCAA-CTATGGTCT
69420545 ATCTCGTTTC
Statistics
Matches: 140, Mismatches: 11, Indels: 18
0.83 0.07 0.11
Matches are distributed among these distances:
43 2 0.01
44 40 0.29
45 93 0.66
46 5 0.04
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.45
Consensus pattern (43 bp):
GCCATAGTATCTTTCAACTATGGTCTTATTCATTTGGTTTAAT
Found at i:69420515 original size:89 final size:90
Alignment explanation
Indices: 69420342--69420544 Score: 272
Period size: 89 Copynumber: 2.3 Consensus size: 90
69420332 GAAGTGAGGC
** *
69420342 CATAGTATCTTTCAACTATGGTCTTATTTGTATTGGTTTTAATGCCATAGTATCTTTCAATTATG
1 CATAGTATCTTTCAACTATGGTCTTATTCATATTGGTTTTAATGCCATAGTATCTTTCAACTATG
69420407 GTCTTATACATTTCCGGTATAATGT
66 GTCTTATACATTTCCGGTATAATGT
*
69420432 CATAGTATCTTTCAACTATGG-CTTTATTCAT-TCTGG-TTTAATGTCATAGTATCTTTCAACTA
1 CATAGTATCTTTCAACTATGGTC-TTATTCATAT-TGGTTTTAATGCCATAGTATCTTTCAACTA
* *
69420494 TGGTCTT-TCTCATTTCGGGTATAATGT
64 TGGTCTTAT-ACATTTCCGGTATAATGT
*
69420521 CATGGTATCTTTCAACCT-TGGTCT
1 CATAGTATCTTTCAA-CTATGGTCT
69420545 ATCTCGTTTC
Statistics
Matches: 101, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
88 1 0.01
89 67 0.66
90 33 0.33
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.46
Consensus pattern (90 bp):
CATAGTATCTTTCAACTATGGTCTTATTCATATTGGTTTTAATGCCATAGTATCTTTCAACTATG
GTCTTATACATTTCCGGTATAATGT
Found at i:69422594 original size:22 final size:22
Alignment explanation
Indices: 69422569--69422610 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
69422559 TTTTGCTTTG
*
69422569 TTTATTTTATTTTAACTTAACT
1 TTTATTTTAATTTAACTTAACT
*
69422591 TTTATTTTAATTTAATTTAA
1 TTTATTTTAATTTAACTTAA
69422611 TTTAAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTATTTTAATTTAACTTAACT
Found at i:69422595 original size:17 final size:17
Alignment explanation
Indices: 69422573--69422605 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
69422563 GCTTTGTTTA
69422573 TTTTATTTTAACTTAAC
1 TTTTATTTTAACTTAAC
*
69422590 TTTTATTTTAATTTAA
1 TTTTATTTTAACTTAA
69422606 TTTAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTATTTTAACTTAAC
Found at i:69425671 original size:22 final size:21
Alignment explanation
Indices: 69425641--69425687 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
69425631 TACAAATTAA
69425641 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
69425663 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
69425684 ATCT
1 ATCT
69425688 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:69425693 original size:19 final size:19
Alignment explanation
Indices: 69425658--69425736 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
69425648 AGATTACAAG
69425658 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
69425679 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
69425696 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
69425715 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
69425734 ATC
1 ATC
69425737 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:69425713 original size:36 final size:38
Alignment explanation
Indices: 69425658--69425730 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
69425648 AGATTACAAG
69425658 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
69425696 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
69425731 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:69425745 original size:36 final size:35
Alignment explanation
Indices: 69425659--69425746 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
69425649 GATTACAAGA
69425659 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
69425695 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
69425731 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
69425747 ATATTTCCAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 32 0.68
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:69426542 original size:44 final size:44
Alignment explanation
Indices: 69426477--69426578 Score: 143
Period size: 44 Copynumber: 2.3 Consensus size: 44
69426467 ATCTGCTCCA
* * *
69426477 CTACTGCTTA-GGGAGATAAGATCCACAATTTTGACTTGTTACC
1 CTACTGCTTAGGGGAGATAAGATCCACAAATTTAACCTGTTACC
* **
69426520 CTACTGTTTAGGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGGAGATAAGATCCACAAATTTAACCTGTTACC
69426564 CTACTGCTTAGGGGA
1 CTACTGCTTAGGGGA
69426579 TTAAGGCACT
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 9 0.18
44 42 0.82
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (44 bp):
CTACTGCTTAGGGGAGATAAGATCCACAAATTTAACCTGTTACC
Found at i:69427552 original size:9 final size:8
Alignment explanation
Indices: 69427535--69427601 Score: 52
Period size: 7 Copynumber: 8.8 Consensus size: 8
69427525 GGCCTCTCCA
69427535 TTTTTTC-
1 TTTTTTCT
69427542 TTTTTTCT
1 TTTTTTCT
69427550 CTTTTTT-T
1 -TTTTTTCT
* *
69427558 ATTTTTAT
1 TTTTTTCT
69427566 TTTTTTCT
1 TTTTTTCT
* *
69427574 CTTTTT-A
1 TTTTTTCT
69427581 TTTTTT-T
1 TTTTTTCT
*
69427588 TTTTTCCT
1 TTTTTTCT
69427596 TTTTTT
1 TTTTTT
69427602 TGAAATAGAA
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
7 22 0.47
8 19 0.40
9 6 0.13
ACGTcount: A:0.04, C:0.10, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTTCT
Found at i:69427562 original size:22 final size:21
Alignment explanation
Indices: 69427535--69427602 Score: 84
Period size: 23 Copynumber: 3.1 Consensus size: 21
69427525 GGCCTCTCCA
*
69427535 TTTTTTCTTTTTTCTCTTTTTT
1 TTTTTTTTTTTTTCTC-TTTTT
69427557 TATTTTTATTTTTTTCTCTTTTT
1 T-TTTTT-TTTTTTTCTCTTTTT
*
69427580 ATTTTTTTTTTTTC-CTTTTT
1 TTTTTTTTTTTTTCTCTTTTT
69427600 TTT
1 TTT
69427603 GAAATAGAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
20 8 0.20
21 8 0.20
22 6 0.15
23 10 0.24
24 9 0.22
ACGTcount: A:0.04, C:0.10, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTTTTTTTTTCTCTTTTT
Found at i:69427563 original size:24 final size:23
Alignment explanation
Indices: 69427534--69427601 Score: 97
Period size: 22 Copynumber: 3.0 Consensus size: 23
69427524 TGGCCTCTCC
69427534 ATTTTTTCTTTTTTCTCTTTTTTT
1 ATTTTTT-TTTTTTCTCTTTTTTT
69427558 ATTTTTATTTTTTTCTC--TTTTT
1 ATTTTT-TTTTTTTCTCTTTTTTT
69427580 ATTTTTTTTTTTTC-CTTTTTTT
1 ATTTTTTTTTTTTCTCTTTTTTT
69427602 TGAAATAGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
20 1 0.02
21 8 0.20
22 16 0.39
24 15 0.37
25 1 0.02
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (23 bp):
ATTTTTTTTTTTTCTCTTTTTTT
Found at i:69427573 original size:31 final size:30
Alignment explanation
Indices: 69427535--69427601 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 30
69427525 GGCCTCTCCA
* *
69427535 TTTTTTCT-TTTTTCTCTTTTTTTATTTTTAT
1 TTTTTTCTCTTTTTAT-TTTTTTT-TTTTCAT
*
69427566 TTTTTTCTCTTTTTATTTTTTTTTTTTCCT
1 TTTTTTCTCTTTTTATTTTTTTTTTTTCAT
69427596 TTTTTT
1 TTTTTT
69427602 TGAAATAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 11 0.34
31 15 0.47
32 6 0.19
ACGTcount: A:0.04, C:0.10, G:0.00, T:0.85
Consensus pattern (30 bp):
TTTTTTCTCTTTTTATTTTTTTTTTTTCAT
Found at i:69427602 original size:24 final size:22
Alignment explanation
Indices: 69427534--69427602 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 22
69427524 TGGCCTCTCC
*
69427534 ATTTTTTCTTTTTTCTCTTTTTTT
1 ATTTTTT-TTTTTTCTTTTTT-TT
*
69427558 ATTTTTATTTTTTTC-TCTTTTT
1 ATTTTT-TTTTTTTCTTTTTTTT
69427580 ATTTTTTTTTTTTCCTTTTTTTT
1 ATTTTTTTTTTTT-CTTTTTTTT
69427603 GAAATAGAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
21 7 0.18
22 9 0.23
23 9 0.23
24 13 0.33
25 1 0.03
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (22 bp):
ATTTTTTTTTTTTCTTTTTTTT
Found at i:69433259 original size:22 final size:21
Alignment explanation
Indices: 69433229--69433275 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
69433219 TACAAATTAA
69433229 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
69433251 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
69433272 ATCT
1 ATCT
69433276 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:69433281 original size:19 final size:19
Alignment explanation
Indices: 69433246--69433343 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
69433236 AGATTACAAG
69433246 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
69433267 ATCATATCTAAGATTGTAT
1 ATCATATCTAAGATTGCAT
69433286 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
69433303 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
69433322 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
69433341 ATC
1 ATC
69433344 CTTAAAGATT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:69433310 original size:36 final size:37
Alignment explanation
Indices: 69433246--69433343 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
69433236 AGATTACAAG
*
69433246 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGTAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
69433286 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
69433322 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
69433344 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:69434195 original size:15 final size:16
Alignment explanation
Indices: 69434177--69434207 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69434167 AGTGTATTTT
69434177 ATTTTTT-TTTTGTCA
1 ATTTTTTGTTTTGTCA
69434192 ATTTTTTGTTTTGTCA
1 ATTTTTTGTTTTGTCA
69434208 TTAATAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.13, C:0.06, G:0.10, T:0.71
Consensus pattern (16 bp):
ATTTTTTGTTTTGTCA
Found at i:69434760 original size:11 final size:11
Alignment explanation
Indices: 69434729--69434768 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
69434719 TTAGGTTAGG
69434729 TTTTCTTTCTC
1 TTTTCTTTCTC
*
69434740 TTTTCCTTCTC
1 TTTTCTTTCTC
*
69434751 TTTTTTTTCT-
1 TTTTCTTTCTC
69434761 TTTTCTTT
1 TTTTCTTT
69434769 TCATTTTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
10 7 0.28
11 18 0.72
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTCTTTCTC
Found at i:69434775 original size:20 final size:20
Alignment explanation
Indices: 69434738--69434776 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
69434728 GTTTTCTTTC
*
69434738 TCTTTTCCTTCTCTTTTTTT
1 TCTTTTCCTTCTCATTTTTT
* *
69434758 TCTTTTTCTTTTCATTTTT
1 TCTTTTCCTTCTCATTTTT
69434777 AGTTTAGGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.77
Consensus pattern (20 bp):
TCTTTTCCTTCTCATTTTTT
Found at i:69434819 original size:26 final size:26
Alignment explanation
Indices: 69434760--69434819 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
69434750 CTTTTTTTTC
* **
69434760 TTTTTCTTTTCATTTTTAGTTTAGGT
1 TTTTTCTTTTCATTTTTAGGTTAAAT
*
69434786 TTTCTCTTTTC-TTTTTAGGTTAAAT
1 TTTTTCTTTTCATTTTTAGGTTAAAT
69434811 TTTATTCTT
1 TTT-TTCTT
69434820 GTAGTTTTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.13, C:0.10, G:0.08, T:0.68
Consensus pattern (26 bp):
TTTTTCTTTTCATTTTTAGGTTAAAT
Found at i:69438131 original size:18 final size:18
Alignment explanation
Indices: 69438104--69438140 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
69438094 CAAATGAATC
* *
69438104 ATTTCCATTTTCATTTTT
1 ATTTCAATTTCCATTTTT
69438122 ATTTCAATTTCCATTTTT
1 ATTTCAATTTCCATTTTT
69438140 A
1 A
69438141 GAAACCTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTCAATTTCCATTTTT
Found at i:69442114 original size:2 final size:2
Alignment explanation
Indices: 69442107--69442149 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
69442097 TCTTACCCTT
69442107 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
69442149 T
1 T
69442150 TGTCTTTCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:69446530 original size:14 final size:14
Alignment explanation
Indices: 69446511--69446542 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
69446501 TTCAACTAGA
69446511 TCTACGGAGGACAT
1 TCTACGGAGGACAT
69446525 TCTACGGAGGACAT
1 TCTACGGAGGACAT
69446539 TCTA
1 TCTA
69446543 GTAAGTCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (14 bp):
TCTACGGAGGACAT
Found at i:69447132 original size:5 final size:5
Alignment explanation
Indices: 69447122--69447149 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
69447112 CTGTATGTTC
69447122 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
69447150 CAAAAATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:69456956 original size:35 final size:35
Alignment explanation
Indices: 69456917--69456988 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
69456907 TTTTGATACT
69456917 ATTATGGTGCTAGTAAGCAAACTCTTAAAGTATGC
1 ATTATGGTGCTAGTAAGCAAACTCTTAAAGTATGC
*
69456952 ATTATGGTGCTAGTAAGCAAATTCTTAAAGTATGC
1 ATTATGGTGCTAGTAAGCAAACTCTTAAAGTATGC
69456987 AT
1 AT
69456989 ACTCCATTGC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (35 bp):
ATTATGGTGCTAGTAAGCAAACTCTTAAAGTATGC
Found at i:69462965 original size:21 final size:21
Alignment explanation
Indices: 69462941--69462991 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
69462931 TAATTCAATA
*
69462941 TTTAGGGTTTTGAGTTTAAAG
1 TTTAGGGTTTGGAGTTTAAAG
** *
69462962 TTTAATGTTTGGAGTTTAGAG
1 TTTAGGGTTTGGAGTTTAAAG
69462983 TTTAGGGTT
1 TTTAGGGTT
69462992 AAAATTCAAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (21 bp):
TTTAGGGTTTGGAGTTTAAAG
Found at i:69463234 original size:21 final size:20
Alignment explanation
Indices: 69463184--69463234 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
69463174 ACTCGGAACC
69463184 TTGAACTC-AAACCCAAACT
1 TTGAACTCTAAACCCAAACT
**
69463203 TTG-GGTCCTAAACCCTAAACT
1 TTGAACT-CTAAACCC-AAACT
69463224 TTGAACTCTAA
1 TTGAACTCTAA
69463235 TATTGAACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
18 1 0.04
19 4 0.17
20 6 0.25
21 12 0.50
22 1 0.04
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.27
Consensus pattern (20 bp):
TTGAACTCTAAACCCAAACT
Found at i:69464292 original size:127 final size:127
Alignment explanation
Indices: 69464066--69464301 Score: 418
Period size: 127 Copynumber: 1.9 Consensus size: 127
69464056 TAGCCTTAAG
* *
69464066 AGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATTCTTC
1 AGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGAACGATTCTTC
* *
69464131 GAATTCTTTAAATACCGAACATTGCCCTTATTTTGAAAATTTTTTGAGAGTGAACTGGTAAA
66 GAATTCTTTAAATACCGAACATTACCCTTATTTTGAAAAATTTTTGAGAGTGAACTGGTAAA
69464193 AGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGAACGATTCTTC
1 AGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGAACGATTCTTC
* *
69464258 GAATTCTTTAAATACCGAACATTATCTTTATTTTGAAAAATTTT
66 GAATTCTTTAAATACCGAACATTACCCTTATTTTGAAAAATTTT
69464302 GACAGAAGAT
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
127 103 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (127 bp):
AGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGAACGATTCTTC
GAATTCTTTAAATACCGAACATTACCCTTATTTTGAAAAATTTTTGAGAGTGAACTGGTAAA
Found at i:69464788 original size:14 final size:14
Alignment explanation
Indices: 69464769--69464799 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
69464759 ATATATTTAC
*
69464769 ATAATAAATATATA
1 ATAATAAATAAATA
69464783 ATAATAAATAAATA
1 ATAATAAATAAATA
69464797 ATA
1 ATA
69464800 TAATAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATAAATAAATA
Found at i:69464800 original size:19 final size:18
Alignment explanation
Indices: 69464771--69464807 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
69464761 ATATTTACAT
69464771 AATAAATATATAATAATA
1 AATAAATATATAATAATA
69464789 AATAAATAATATAATAATA
1 AATAAAT-ATATAATAATA
69464808 TGAAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATATATAATAATA
Found at i:69465143 original size:11 final size:11
Alignment explanation
Indices: 69465123--69465165 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
69465113 GTGTTCTCTA
69465123 AAAAATTCCTCC
1 AAAAA-TCCTCC
*
69465135 AAAAATCCTCT
1 AAAAATCCTCC
69465146 AAAAATCCTCTC
1 AAAAATCCTC-C
*
69465158 CAAAATCC
1 AAAAATCC
69465166 CCCCTCATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
11 15 0.56
12 12 0.44
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAAATCCTCC
Found at i:69465250 original size:18 final size:18
Alignment explanation
Indices: 69465227--69465299 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
69465217 ATAACAAGTA
*
69465227 GGGTGATGGAGTTAGTGG
1 GGGTGATGGAGGTAGTGG
69465245 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
* * *
69465263 ACGGT-TTAGTAGGGT-GTGG
1 -GGGTGAT-GGA-GGTAGTGG
69465282 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
69465300 ATGGTTTAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
17 3 0.07
18 27 0.63
19 10 0.23
20 3 0.07
ACGTcount: A:0.16, C:0.01, G:0.56, T:0.26
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:69465278 original size:29 final size:29
Alignment explanation
Indices: 69465245--69465344 Score: 74
Period size: 37 Copynumber: 3.2 Consensus size: 29
69465235 GAGTTAGTGG
69465245 GGGTGATGGAGGTAGTGGACGGTTTAGTA
1 GGGTGATGGAGGTAGTGGACGGTTTAGTA
*
69465274 GGGTGTGGGGGTGATGGAGGTAGTGGATGGTTTAGTA
1 --------GGGTGATGGAGGTAGTGGACGGTTTAGTA
* * ** *
69465311 AGGTGATGGAGTTAGTGTTCGGTTTAGTG
1 GGGTGATGGAGGTAGTGGACGGTTTAGTA
69465340 GGGTG
1 GGGTG
69465345 TTTAATTTGG
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
29 27 0.49
37 28 0.51
ACGTcount: A:0.17, C:0.02, G:0.50, T:0.31
Consensus pattern (29 bp):
GGGTGATGGAGGTAGTGGACGGTTTAGTA
Found at i:69465291 original size:37 final size:37
Alignment explanation
Indices: 69465241--69465315 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
69465231 GATGGAGTTA
*
69465241 GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAGGGT
1 GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAAGGT
*
69465278 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAAGGT
1 GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAAGGT
69465315 G
1 G
69465316 ATGGAGTTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.17, C:0.01, G:0.53, T:0.28
Consensus pattern (37 bp):
GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAAGGT
Found at i:69467737 original size:39 final size:39
Alignment explanation
Indices: 69467690--69467883 Score: 257
Period size: 39 Copynumber: 5.0 Consensus size: 39
69467680 GTGTGAAATA
* * *
69467690 TATATCCGGGCTAATTCCCGAAGGCGTTTGTACTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
69467729 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* **
69467768 TATATCCGGGCTAAGTCCCGAATGCATTCATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* *
69467807 TATATCTGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* * *
69467845 TATATCCGGGCTTAAAGTCCCGCATGC-TTTGTGGTGGTG
1 TATATCCGGGC-T-AAGTCCCGAAGGCATTTGTGCTGGTG
69467884 ATTGAATTTG
Statistics
Matches: 137, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 20 0.15
39 96 0.70
40 21 0.15
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
Found at i:69471264 original size:49 final size:49
Alignment explanation
Indices: 69471140--69471264 Score: 144
Period size: 49 Copynumber: 2.6 Consensus size: 49
69471130 ATGAAAGTTG
* * * * *
69471140 AACATGTGACCACATAACTACTGTCAACTGGGCTCTCGAGTTATACTCC
1 AACACGTGACCGCATAACCACTGTCAAATGGGCTCCCGAGTTATACTCC
* ** *
69471189 AACATGTGATTGCATAACCAATGTCAAATGGGCTCCCGAGTTATACTCC
1 AACACGTGACCGCATAACCACTGTCAAATGGGCTCCCGAGTTATACTCC
*
69471238 AATC-CGTGACCGCATAACCACCGTCAA
1 AA-CACGTGACCGCATAACCACTGTCAA
69471265 CTAGAAGCCC
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
49 62 0.98
50 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (49 bp):
AACACGTGACCGCATAACCACTGTCAAATGGGCTCCCGAGTTATACTCC
Found at i:69484950 original size:18 final size:18
Alignment explanation
Indices: 69484927--69484969 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
69484917 GTGAAATGGT
* *
69484927 AAAAAAAAAATAAAAATG
1 AAAAAAAAAAGAAAAAAG
69484945 AAAAAAAAAAGAAAAAAG
1 AAAAAAAAAAGAAAAAAG
69484963 AAAAAAA
1 AAAAAAA
69484970 CCAATTTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.88, C:0.00, G:0.07, T:0.05
Consensus pattern (18 bp):
AAAAAAAAAAGAAAAAAG
Found at i:69487126 original size:9 final size:8
Alignment explanation
Indices: 69487110--69487135 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
69487100 ATGTATGTAT
69487110 ATAAAAAA
1 ATAAAAAA
69487118 ATAAAAAA
1 ATAAAAAA
69487126 ATAAAAAA
1 ATAAAAAA
69487134 AT
1 AT
69487136 GAAGCCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (8 bp):
ATAAAAAA
Found at i:69487536 original size:18 final size:20
Alignment explanation
Indices: 69487503--69487543 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
69487493 CTGTTTCAAC
*
69487503 TTTTTATTATTTAAAT-CAT
1 TTTTTATTATTAAAATACAT
69487522 TTTTTATT-TTAAAATACAT
1 TTTTTATTATTAAAATACAT
69487541 TTT
1 TTT
69487544 AACCTTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTTATTATTAAAATACAT
Found at i:69488108 original size:18 final size:18
Alignment explanation
Indices: 69488087--69488124 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
69488077 TAGCAACTCC
69488087 TTTGCTTGCTGAAATTTG
1 TTTGCTTGCTGAAATTTG
69488105 TTTGCTTGCTGAAATTTG
1 TTTGCTTGCTGAAATTTG
69488123 TT
1 TT
69488125 CATGCCTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.11, G:0.21, T:0.53
Consensus pattern (18 bp):
TTTGCTTGCTGAAATTTG
Found at i:69492566 original size:20 final size:19
Alignment explanation
Indices: 69492522--69492567 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
69492512 TTCATGATTC
69492522 AAGGTTTGGGTTCGAGTTT
1 AAGGTTTGGGTTCGAGTTT
** *
69492541 TGGGTTTAGGGTTTGAGTTT
1 AAGGTTT-GGGTTCGAGTTT
69492561 AAGGTTT
1 AAGGTTT
69492568 TGAGTTCGGG
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.15, C:0.02, G:0.37, T:0.46
Consensus pattern (19 bp):
AAGGTTTGGGTTCGAGTTT
Done.