Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 209 of 284
Found at i:69494594 original size:17 final size:18
Alignment explanation
Indices: 69494574--69494619 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
69494564 AGGGCAATCT
*
69494574 GGGCATATGGGCC-ACAC
1 GGGCATGTGGGCCAACAC
*
69494591 GGGCGTGTGGGCCAACAC
1 GGGCATGTGGGCCAACAC
*
69494609 AGGCATGTGGG
1 GGGCATGTGGG
69494620 TTAAAAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.20, C:0.24, G:0.43, T:0.13
Consensus pattern (18 bp):
GGGCATGTGGGCCAACAC
Found at i:69505158 original size:30 final size:30
Alignment explanation
Indices: 69505123--69505180 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
69505113 TAAACACTTC
69505123 CACACGGGT-GATCCACACGCTC-GTGTGTGA
1 CACACGGGTAGA-CCACACGC-CAGTGTGTGA
69505153 CACACGGGTAGACCACACGCCAGTGTGT
1 CACACGGGTAGACCACACGCCAGTGTGT
69505181 TATGGCCGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 1 0.04
30 23 0.88
31 2 0.08
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.17
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCAGTGTGTGA
Found at i:69510545 original size:30 final size:30
Alignment explanation
Indices: 69510509--69510571 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
69510499 ACTTATTTTA
69510509 TTGTTAAATTTGTTATTATTTTAAAGGCAT
1 TTGTTAAATTTGTTATTATTTTAAAGGCAT
*
69510539 TTGTTAAATTTGTTATTATTTTAGAGGCAT
1 TTGTTAAATTTGTTATTATTTTAAAGGCAT
69510569 TTG
1 TTG
69510572 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.16, T:0.54
Consensus pattern (30 bp):
TTGTTAAATTTGTTATTATTTTAAAGGCAT
Found at i:69512826 original size:28 final size:29
Alignment explanation
Indices: 69512786--69512846 Score: 115
Period size: 28 Copynumber: 2.1 Consensus size: 29
69512776 AAGAAACTTA
69512786 AAGTATGAAAGGGAATACTAATGAAAACC
1 AAGTATGAAAGGGAATACTAATGAAAACC
69512815 AAGT-TGAAAGGGAATACTAATGAAAACC
1 AAGTATGAAAGGGAATACTAATGAAAACC
69512843 AAGT
1 AAGT
69512847 CAATTCAGAC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 28 0.88
29 4 0.12
ACGTcount: A:0.51, C:0.10, G:0.21, T:0.18
Consensus pattern (29 bp):
AAGTATGAAAGGGAATACTAATGAAAACC
Found at i:69518338 original size:13 final size:13
Alignment explanation
Indices: 69518320--69518344 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69518310 CGAAGACAGT
69518320 CACGGCCGTGTGA
1 CACGGCCGTGTGA
69518333 CACGGCCGTGTG
1 CACGGCCGTGTG
69518345 CACCCACACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTGA
Found at i:69521674 original size:3 final size:3
Alignment explanation
Indices: 69521634--69521658 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
69521624 CATCATCATC
69521634 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
69521659 GTATATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:69521728 original size:44 final size:48
Alignment explanation
Indices: 69521649--69521738 Score: 118
Period size: 47 Copynumber: 2.0 Consensus size: 48
69521639 TATTATTATT
* *
69521649 ATTATTATTAGTATATGTTTTATTATGTATGTATATAT-TTATGTAGC
1 ATTATTATTAGTATATGTTTTATTATCTATATATATATATTATGTAGC
69521696 ATTATTATTAGTCAT-T-TTTTATT-TCTA-ATATATATATTATGTA
1 ATTATTATTAGT-ATATGTTTTATTATCTATATATATATATTATGTA
69521739 AATATTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 7 0.18
45 10 0.26
46 7 0.18
47 13 0.33
48 2 0.05
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.57
Consensus pattern (48 bp):
ATTATTATTAGTATATGTTTTATTATCTATATATATATATTATGTAGC
Found at i:69521767 original size:48 final size:44
Alignment explanation
Indices: 69521714--69521897 Score: 120
Period size: 46 Copynumber: 4.1 Consensus size: 44
69521704 TAGTCATTTT
69521714 TTATTTCTAATATATATATTATGTAAATATTTTAATATTATATTATA
1 TTATTT-T-ATATATATATTATGT-AATATTTTAATATTATATTATA
* *
69521761 TATATTTT-TCATATATGTCATGT-ATATTGTT--T-TTAATATTATA
1 T-TATTTTAT-ATATATATTATGTAATATT-TTAATATT-ATATTATA
69521804 TT-TTTTATATAT-TATTATGTATATATTTTAATATTATTAGTTATA
1 TTATTTTATATATATATTATGTA-ATATTTTAATATTA-TA-TTATA
* * * *
69521849 CATCTTTTATAT-TAT-TGTATGT-ATATTTCTAATACTATATTGTA
1 -TTATTTTATATATATAT-TATGTAATATTT-TAATATTATATTATA
69521893 -TATTT
1 TTATTT
69521898 CTAACACCAT
Statistics
Matches: 112, Mismatches: 8, Indels: 39
0.70 0.05 0.25
Matches are distributed among these distances:
40 6 0.05
41 10 0.09
42 13 0.12
43 12 0.11
44 13 0.12
45 16 0.14
46 21 0.19
47 16 0.14
48 5 0.04
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (44 bp):
TTATTTTATATATATATTATGTAATATTTTAATATTATATTATA
Found at i:69521814 original size:39 final size:38
Alignment explanation
Indices: 69521761--69521840 Score: 99
Period size: 39 Copynumber: 2.1 Consensus size: 38
69521751 TTATATTATA
* *
69521761 TATATTTTTCATATA-TGTCATGTATATTGTTTTTAATAT
1 TATATTTTTCATATATTATCATGTATA-T-ATTTTAATAT
* *
69521800 TATATTTTTTATATATTATTATGTATATATTTTAATAT
1 TATATTTTTCATATATTATCATGTATATATTTTAATAT
69521838 TAT
1 TAT
69521841 TAGTTATACA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
38 12 0.33
39 15 0.42
40 9 0.25
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (38 bp):
TATATTTTTCATATATTATCATGTATATATTTTAATAT
Found at i:69521841 original size:25 final size:24
Alignment explanation
Indices: 69521800--69521847 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
69521790 TTTTTAATAT
*
69521800 TATATTTTTTATATATTA-TTATG
1 TATATTTTTAATATATTAGTTATG
69521823 TATATATTTTAATATTATTAGTTAT
1 TATAT-TTTTAATA-TATTAGTTAT
69521848 ACATCTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 7 0.33
25 5 0.24
26 4 0.19
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (24 bp):
TATATTTTTAATATATTAGTTATG
Found at i:69522224 original size:43 final size:43
Alignment explanation
Indices: 69522177--69522308 Score: 157
Period size: 43 Copynumber: 3.1 Consensus size: 43
69522167 TTGTCCCTAT
69522177 TATATTTATTATTAATATTAGTACATATATTTTATTATATGGA
1 TATATTTATTATTAATATTAGTACATATATTTTATTATATGGA
* * * * *
69522220 TATATATACTT-TTTATACATAGT--AT-TATTTTCA-TATATCGT
1 TATATTTA-TTATTAATA-TTAGTACATATATTTT-ATTATATGGA
69522261 TATATTTATTATTAATATTAGTACATATATTTTATTATATGGA
1 TATATTTATTATTAATATTAGTACATATATTTTATTATATGGA
69522304 TATAT
1 TATAT
69522309 ATACTTTTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 16
0.73 0.10 0.16
Matches are distributed among these distances:
40 6 0.08
41 24 0.34
42 6 0.08
43 29 0.41
44 6 0.08
ACGTcount: A:0.36, C:0.05, G:0.06, T:0.54
Consensus pattern (43 bp):
TATATTTATTATTAATATTAGTACATATATTTTATTATATGGA
Found at i:69522268 original size:84 final size:84
Alignment explanation
Indices: 69522176--69522358 Score: 366
Period size: 84 Copynumber: 2.2 Consensus size: 84
69522166 TTTGTCCCTA
69522176 TTATATTTATTATTAATATTAGTACATATATTTTATTATATGGATATATATACTTTTTATACATA
1 TTATATTTATTATTAATATTAGTACATATATTTTATTATATGGATATATATACTTTTTATACATA
69522241 GTATTATTTTCATATATCG
66 GTATTATTTTCATATATCG
69522260 TTATATTTATTATTAATATTAGTACATATATTTTATTATATGGATATATATACTTTTTATACATA
1 TTATATTTATTATTAATATTAGTACATATATTTTATTATATGGATATATATACTTTTTATACATA
69522325 GTATTATTTTCATATATCG
66 GTATTATTTTCATATATCG
69522344 TTATATTTATTATTA
1 TTATATTTATTATTA
69522359 TACCTACTAT
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 99 1.00
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (84 bp):
TTATATTTATTATTAATATTAGTACATATATTTTATTATATGGATATATATACTTTTTATACATA
GTATTATTTTCATATATCG
Found at i:69522341 original size:41 final size:41
Alignment explanation
Indices: 69522204--69522334 Score: 151
Period size: 41 Copynumber: 3.1 Consensus size: 41
69522194 TTAGTACATA
69522204 TATTTTATTATATGGATATATATACTTTTTATACATAGTAT
1 TATTTTATTATATGGATATATATACTTTTTATACATAGTAT
* * * * *
69522245 TATTTTCA-TATATCGTTATATTTA-TTATTAATA-TTAGTACAT
1 TATTTT-ATTATATGGATATATATACTT-TTTATACATAGT--AT
69522287 ATATTTTATTATATGGATATATATACTTTTTATACATAGTAT
1 -TATTTTATTATATGGATATATATACTTTTTATACATAGTAT
69522329 TATTTT
1 TATTTT
69522335 CATATATCGT
Statistics
Matches: 72, Mismatches: 10, Indels: 16
0.73 0.10 0.16
Matches are distributed among these distances:
40 6 0.08
41 30 0.42
42 6 0.08
43 24 0.33
44 6 0.08
ACGTcount: A:0.34, C:0.05, G:0.06, T:0.55
Consensus pattern (41 bp):
TATTTTATTATATGGATATATATACTTTTTATACATAGTAT
Found at i:69522349 original size:41 final size:41
Alignment explanation
Indices: 69522220--69522349 Score: 149
Period size: 41 Copynumber: 3.1 Consensus size: 41
69522210 ATTATATGGA
69522220 TATATATACTTTTTATACATAGTATTATTTTCATATATCGT
1 TATATATACTTTTTATACATAGTATTATTTTCATATATCGT
* * * * *
69522261 TATATTTA-TTATTAATA-TTAGTACATATATTTT-ATTATATGGA
1 TATATATACTT-TTTATACATAGT--AT-TATTTTCA-TATATCGT
69522304 TATATATACTTTTTATACATAGTATTATTTTCATATATCGT
1 TATATATACTTTTTATACATAGTATTATTTTCATATATCGT
69522345 TATAT
1 TATAT
69522350 TTATTATTAT
Statistics
Matches: 71, Mismatches: 10, Indels: 16
0.73 0.10 0.16
Matches are distributed among these distances:
40 6 0.08
41 29 0.41
42 6 0.08
43 24 0.34
44 6 0.08
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (41 bp):
TATATATACTTTTTATACATAGTATTATTTTCATATATCGT
Found at i:69522492 original size:3 final size:3
Alignment explanation
Indices: 69522433--69522477 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
69522423 TACATACATC
69522433 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
69522478 GTATATGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:69522530 original size:21 final size:21
Alignment explanation
Indices: 69522478--69522530 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
69522468 ATTATTATTA
* *
69522478 GTATATGTTTATTATATATGT
1 GTATATGTTTAATATATATAT
* *
69522499 ATATATCTTTAATATATATAT
1 GTATATGTTTAATATATATAT
69522520 GTATATGTTTA
1 GTATATGTTTA
69522531 TGCAGTATTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (21 bp):
GTATATGTTTAATATATATAT
Found at i:69522629 original size:25 final size:25
Alignment explanation
Indices: 69522601--69522669 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
69522591 TATTTTAATA
69522601 ACTATATTATGTATTTATTTTTAAC
1 ACTATATTATGTATTTATTTTTAAC
* * * *
69522626 ACTATTTTATGTATATACTTTTAAT
1 ACTATATTATGTATTTATTTTTAAC
69522651 A-T-TATTATGTATTTATTTT
1 ACTATATTATGTATTTATTTT
69522670 AATATATATG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
23 14 0.38
24 1 0.03
25 22 0.59
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.59
Consensus pattern (25 bp):
ACTATATTATGTATTTATTTTTAAC
Found at i:69522687 original size:20 final size:22
Alignment explanation
Indices: 69522437--69522722 Score: 93
Period size: 23 Copynumber: 12.7 Consensus size: 22
69522427 TACATCTTAT
*
69522437 TATTATTATTATTATTAT-TAT-
1 TATT-TTAATATTATTATGTATA
*
69522458 TATTATTATTATTATTAT-TAGTA
1 TATT-TTAATATTATTATGTA-TA
*
69522481 TATGTT--TATTATATATGTATA
1 TATTTTAATATTAT-TATGTATA
69522502 TATCTTTAATA-TATATATGTATA
1 TAT-TTTAATATTAT-TATGTATA
* * *
69522525 TGTTTATGCAGTATTATTA-ATA-A
1 TATTT-T--AATATTATTATGTATA
** **
69522548 T-TGTTTTGTAACATTAT-TAT-
1 TAT-TTTAATATTATTATGTATA
*
69522568 TATTTCTAATATGTA-TATATATA
1 TATTT-TAATAT-TATTATGTATA
*
69522591 TATTTTAATAACTATATTATGTATT
1 TATTTTAAT-A-T-TATTATGTATA
69522616 TATTTTTAACACTATT-TTATGTATA
1 TA-TTTT-A-A-TATTATTATGTATA
*
69522641 TACTTTTAATATTATTATGTATT
1 TA-TTTTAATATTATTATGTATA
*
69522664 TATTTTAATA-TA-TATGTACA
1 TATTTTAATATTATTATGTATA
* *
69522684 TATTTATGTAGTATTATTA-ATATA
1 TA-TT-T-TAATATTATTATGTATA
*
69522708 TATTTT-ATGTTATTA
1 TATTTTAATATTATTA
69522723 GCATTTCTAA
Statistics
Matches: 208, Mismatches: 25, Indels: 65
0.70 0.08 0.22
Matches are distributed among these distances:
20 33 0.16
21 40 0.19
22 33 0.16
23 45 0.22
24 15 0.07
25 29 0.14
26 8 0.04
27 2 0.01
28 2 0.01
29 1 0.00
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (22 bp):
TATTTTAATATTATTATGTATA
Found at i:69522687 original size:24 final size:22
Alignment explanation
Indices: 69522644--69522722 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 22
69522634 ATGTATATAC
**
69522644 TTTTAATATTATTATGTATTTA
1 TTTTAATATTATTACATATTTA
69522666 TTTTAATATATATGTACATATTTA
1 TTTTAATAT-TAT-TACATATTTA
* * *
69522690 -TGTAGTATTATTA-ATATATA
1 TTTTAATATTATTACATATTTA
*
69522710 TTTT-ATGTTATTA
1 TTTTAATATTATTA
69522723 GCATTTCTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
20 13 0.28
21 4 0.09
22 12 0.26
23 9 0.20
24 8 0.17
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.58
Consensus pattern (22 bp):
TTTTAATATTATTACATATTTA
Found at i:69526867 original size:22 final size:22
Alignment explanation
Indices: 69526842--69526886 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
69526832 ATTCATGACT
69526842 AACATTCATTCGTCATTTATTC
1 AACATTCATTCGTCATTTATTC
*
69526864 AACATTCATTTGTCATTTATTC
1 AACATTCATTCGTCATTTATTC
69526886 A
1 A
69526887 TTCATCCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.47
Consensus pattern (22 bp):
AACATTCATTCGTCATTTATTC
Found at i:69535314 original size:73 final size:73
Alignment explanation
Indices: 69535193--69535329 Score: 229
Period size: 73 Copynumber: 1.9 Consensus size: 73
69535183 ATTTCTGTTT
* *
69535193 TCAAAAATCCACTCATATTGCGAGAGGTGGGTTAAGCCTCAGGACACGCTGAGGTAATTTCAATA
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAATA
69535258 ACTGATTG
66 ACTGATTG
* * *
69535266 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAT
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAAT
69535330 TCTGCTTTTC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 59 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (73 bp):
TCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAATA
ACTGATTG
Found at i:69535340 original size:13 final size:14
Alignment explanation
Indices: 69535322--69535355 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
69535312 CGCTGAGGTA
69535322 TTTTCAA-TTCTGC
1 TTTTCAATTTCTGC
69535335 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
69535349 TTTTCAA
1 TTTTCAA
69535356 AAAAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Found at i:69535448 original size:14 final size:15
Alignment explanation
Indices: 69535413--69535445 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
69535403 CGTTGAGGTA
*
69535413 TTTTCAATTTCTGTT
1 TTTTCAATTTATGTT
69535428 TTTTCAATTTATGTT
1 TTTTCAATTTATGTT
69535443 TTT
1 TTT
69535446 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.09, G:0.06, T:0.70
Consensus pattern (15 bp):
TTTTCAATTTATGTT
Found at i:69535487 original size:88 final size:86
Alignment explanation
Indices: 69535266--69535531 Score: 397
Period size: 88 Copynumber: 3.0 Consensus size: 86
69535256 TAACTGATTG
69535266 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
*
69535331 CTGCTTTTCAATTTCTGCTTT
66 CTGCTTTTCAATTTCTGTTTT
* * * * *
69535352 TCAAAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCTTCAGGACACGTTGAGGTATTTT
1 TC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
* *
69535417 CAATTTCTGTTTTTTCAATTTATGTTTT
61 CAA-TTCTG-CTTTTCAATTTCTGTTTT
69535445 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
69535510 CTGCTTTTCAATTTCTGTTTT
66 CTGCTTTTCAATTTCTGTTTT
69535531 T
1 T
69535532 TCAATTTATG
Statistics
Matches: 158, Mismatches: 15, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
86 19 0.12
87 5 0.03
88 56 0.35
91 56 0.35
92 5 0.03
93 17 0.11
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (86 bp):
TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
CTGCTTTTCAATTTCTGTTTT
Found at i:69535531 original size:101 final size:101
Alignment explanation
Indices: 69535413--69535783 Score: 742
Period size: 101 Copynumber: 3.7 Consensus size: 101
69535403 CGTTGAGGTA
69535413 TTTTCAATTTCTGTTTTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 TTTTCAATTTCTGTTTTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
69535478 GAGCCTCAGGGCACGCTGAGGTATTTTCAATTCTGC
66 GAGCCTCAGGGCACGCTGAGGTATTTTCAATTCTGC
69535514 TTTTCAATTTCTGTTTTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 TTTTCAATTTCTGTTTTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
69535579 GAGCCTCAGGGCACGCTGAGGTATTTTCAATTCTGC
66 GAGCCTCAGGGCACGCTGAGGTATTTTCAATTCTGC
69535615 TTTTCAATTTCTGTTTTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 TTTTCAATTTCTGTTTTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
69535680 GAGCCTCAGGGCACGCTGAGGTATTTTCAATTCTGC
66 GAGCCTCAGGGCACGCTGAGGTATTTTCAATTCTGC
69535716 TTTTCAATTTCTGTTTTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 TTTTCAATTTCTGTTTTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
69535781 GAG
66 GAG
69535784 TATCGGTCAC
Statistics
Matches: 270, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 270 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (101 bp):
TTTTCAATTTCTGTTTTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCAGGGCACGCTGAGGTATTTTCAATTCTGC
Found at i:69535534 original size:15 final size:15
Alignment explanation
Indices: 69535501--69535546 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
69535491 CGCTGAGGTA
*
69535501 TTTTCAA-TTCTG-C
1 TTTTCAATTTCTGTT
69535514 TTTTCAATTTCTGTT
1 TTTTCAATTTCTGTT
*
69535529 TTTTCAATTTATGTT
1 TTTTCAATTTCTGTT
69535544 TTT
1 TTT
69535547 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 7 0.24
14 5 0.17
15 17 0.59
ACGTcount: A:0.15, C:0.13, G:0.07, T:0.65
Consensus pattern (15 bp):
TTTTCAATTTCTGTT
Found at i:69535545 original size:13 final size:14
Alignment explanation
Indices: 69535501--69535549 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
69535491 CGCTGAGGTA
*
69535501 TTTTCAA-TTCTGC
1 TTTTCAATTTCTGT
69535514 TTTTCAATTTCTGTT
1 TTTTCAATTTCTG-T
*
69535529 TTTTCAATTTATGT
1 TTTTCAATTTCTGT
69535543 TTTTCAA
1 TTTTCAA
69535550 AAATCAACTC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
13 7 0.22
14 13 0.41
15 12 0.38
ACGTcount: A:0.18, C:0.14, G:0.06, T:0.61
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:69535635 original size:15 final size:15
Alignment explanation
Indices: 69535602--69535647 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
69535592 CGCTGAGGTA
*
69535602 TTTTCAA-TTCTG-C
1 TTTTCAATTTCTGTT
69535615 TTTTCAATTTCTGTT
1 TTTTCAATTTCTGTT
*
69535630 TTTTCAATTTATGTT
1 TTTTCAATTTCTGTT
69535645 TTT
1 TTT
69535648 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 7 0.24
14 5 0.17
15 17 0.59
ACGTcount: A:0.15, C:0.13, G:0.07, T:0.65
Consensus pattern (15 bp):
TTTTCAATTTCTGTT
Found at i:69535646 original size:13 final size:14
Alignment explanation
Indices: 69535602--69535650 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
69535592 CGCTGAGGTA
*
69535602 TTTTCAA-TTCTGC
1 TTTTCAATTTCTGT
69535615 TTTTCAATTTCTGTT
1 TTTTCAATTTCTG-T
*
69535630 TTTTCAATTTATGT
1 TTTTCAATTTCTGT
69535644 TTTTCAA
1 TTTTCAA
69535651 AAATCAACTC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
13 7 0.22
14 13 0.41
15 12 0.38
ACGTcount: A:0.18, C:0.14, G:0.06, T:0.61
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:69535736 original size:15 final size:15
Alignment explanation
Indices: 69535703--69535748 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
69535693 CGCTGAGGTA
*
69535703 TTTTCAA-TTCTG-C
1 TTTTCAATTTCTGTT
69535716 TTTTCAATTTCTGTT
1 TTTTCAATTTCTGTT
*
69535731 TTTTCAATTTATGTT
1 TTTTCAATTTCTGTT
69535746 TTT
1 TTT
69535749 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 7 0.24
14 5 0.17
15 17 0.59
ACGTcount: A:0.15, C:0.13, G:0.07, T:0.65
Consensus pattern (15 bp):
TTTTCAATTTCTGTT
Found at i:69535747 original size:13 final size:14
Alignment explanation
Indices: 69535703--69535751 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
69535693 CGCTGAGGTA
*
69535703 TTTTCAA-TTCTGC
1 TTTTCAATTTCTGT
69535716 TTTTCAATTTCTGTT
1 TTTTCAATTTCTG-T
*
69535731 TTTTCAATTTATGT
1 TTTTCAATTTCTGT
69535745 TTTTCAA
1 TTTTCAA
69535752 AAATCAACTC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
13 7 0.22
14 13 0.41
15 12 0.38
ACGTcount: A:0.18, C:0.14, G:0.06, T:0.61
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:69535955 original size:88 final size:86
Alignment explanation
Indices: 69535716--69535958 Score: 258
Period size: 86 Copynumber: 2.8 Consensus size: 86
69535706 TCAATTCTGC
* *
69535716 TTTTCAATTTCTGTTTTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 TTTTCAATTTCT-ATTTTTCAA-TTCTGTTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
69535781 GAGTATCGGTCACATGTCGAGGTA
63 GAGCATCGGTCACATGTCGAGCTA
** * * *
69535805 TTTTCAAAATCTGTTTTTCAAATTCAG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTATTTTTC-AATTCTGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
69535869 GCCTTGGCTCACGTG-CTGAGCTA
65 GCATCGG-TCACATGTC-GAGCTA
* **
69535892 TTTTCAATTTCTATTTTT-AATGTCTGTTTTTAAAGAGTCAACTCATATTGCGAGAAATGAGTTG
1 TTTTCAATTTCTATTTTTCAAT-TCTGTTTTTAAA-AATCAACTCATATTGCGAGAGGTGAGTTG
69535956 AGC
64 AGC
69535959 TCAGGATTAC
Statistics
Matches: 129, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
85 3 0.02
86 41 0.32
87 35 0.27
88 38 0.29
89 12 0.09
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.40
Consensus pattern (86 bp):
TTTTCAATTTCTATTTTTCAATTCTGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CATCGGTCACATGTCGAGCTA
Found at i:69537074 original size:10 final size:9
Alignment explanation
Indices: 69537061--69537085 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
69537051 TTAAAAATAT
69537061 AAAAAAAAC
1 AAAAAAAAC
69537070 AAAAAAAAC
1 AAAAAAAAC
69537079 AAAAAAA
1 AAAAAAA
69537086 TATACCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:69537741 original size:3 final size:3
Alignment explanation
Indices: 69537735--69537772 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
69537725 CATCATCATC
69537735 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
69537773 GTATATATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:69537936 original size:24 final size:23
Alignment explanation
Indices: 69537822--69537929 Score: 81
Period size: 24 Copynumber: 4.3 Consensus size: 23
69537812 TTCTAATATG
*
69537822 TATATATTATGTAAATATTTTAA
1 TATATATTATGTATATATTTTAA
* *
69537845 TATTATATTATATATATATTTTTCA
1 TA-TATATTATGTATATA-TTTTAA
*
69537870 TATATGTTATGTATATATGTTTTTAA
1 TATATATTATGTATATA---TTTTAA
* * *
69537896 TATTATATTTTTTATATATTATTATG
1 TA-TATATTATGTATATATT-TTA-A
69537922 TATATATT
1 TATATATT
69537930 TTAATATTAT
Statistics
Matches: 68, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
23 2 0.03
24 28 0.41
25 16 0.24
26 10 0.15
27 12 0.18
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (23 bp):
TATATATTATGTATATATTTTAA
Found at i:69537941 original size:41 final size:42
Alignment explanation
Indices: 69537847--69537941 Score: 115
Period size: 41 Copynumber: 2.3 Consensus size: 42
69537837 TATTTTAATA
*
69537847 TTATATTATATATATATTTTTCATATATGTTATGTATATATGT
1 TTATATTAT-TATATATTTTTCATATATATTATGTATATATGT
* *
69537890 TTTTAATATTATAT-TTTTT-ATATATTATTATGTATATAT-T
1 TTATATTATTATATATTTTTCATATA-TATTATGTATATATGT
69537930 TTAATATTATTA
1 TT-ATATTATTA
69537942 GTTATATATC
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
40 8 0.18
41 25 0.56
42 5 0.11
43 7 0.16
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (42 bp):
TTATATTATTATATATTTTTCATATATATTATGTATATATGT
Found at i:69538089 original size:21 final size:19
Alignment explanation
Indices: 69538064--69538118 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 19
69538054 AATAGTTTTT
69538064 TATATTATTATCATTTCTAAA
1 TATATTATTAT-ATTT-TAAA
*
69538085 TATATGTA-TATATTTTATA
1 TATAT-TATTATATTTTAAA
69538104 TATATTATATATATT
1 TATATTAT-TATATT
69538119 ATATATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 2 0.07
19 8 0.27
20 10 0.33
21 8 0.27
22 2 0.07
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (19 bp):
TATATTATTATATTTTAAA
Found at i:69538105 original size:9 final size:9
Alignment explanation
Indices: 69538084--69538124 Score: 64
Period size: 9 Copynumber: 4.4 Consensus size: 9
69538074 TCATTTCTAA
69538084 ATATATGTAT
1 ATATAT-TAT
*
69538094 ATATTTTAT
1 ATATATTAT
69538103 ATATATTAT
1 ATATATTAT
69538112 ATATATTAT
1 ATATATTAT
69538121 ATAT
1 ATAT
69538125 TTTTAATGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
9 24 0.83
10 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (9 bp):
ATATATTAT
Found at i:69538233 original size:27 final size:28
Alignment explanation
Indices: 69538193--69538249 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
69538183 TCTCATGTAC
* *
69538193 ATATTCTTGAATACTATGTTATATATAT
1 ATATTCTTGAATACCATATTATATATAT
* *
69538221 ATATT-TTTAATACCATATTATGTATAT
1 ATATTCTTGAATACCATATTATATATAT
69538248 AT
1 AT
69538250 TATTATATCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (28 bp):
ATATTCTTGAATACCATATTATATATAT
Found at i:69538455 original size:3 final size:3
Alignment explanation
Indices: 69538447--69538486 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
69538437 TACATACATC
69538447 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
69538487 ATATGTATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:69538516 original size:19 final size:20
Alignment explanation
Indices: 69538484--69538522 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69538474 TTATTATTAT
69538484 TATATATGTATATATCTTTAA
1 TATATATG-ATATATCTTTAA
*
69538505 TATATATG-TATATGTTTA
1 TATATATGATATATCTTTA
69538523 TGCAGTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
21 8 0.47
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.54
Consensus pattern (20 bp):
TATATATGATATATCTTTAA
Found at i:69538639 original size:25 final size:24
Alignment explanation
Indices: 69538593--69538663 Score: 74
Period size: 25 Copynumber: 3.0 Consensus size: 24
69538583 TTTTTTAATA
* *
69538593 ACTATATTATGTATGTATTTTTAAC
1 ACTATTTTATGTATATATTTTT-AC
*
69538618 ACTATTTTATGTATATACTTTT-C
1 ACTATTTTATGTATATATTTTTAC
*
69538641 A-TATTTTTATGTATTTATTTTTA
1 ACTA-TTTTATGTATATATTTTTA
69538664 TATATGTACA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
22 2 0.05
23 18 0.46
25 19 0.49
ACGTcount: A:0.28, C:0.07, G:0.06, T:0.59
Consensus pattern (24 bp):
ACTATTTTATGTATATATTTTTAC
Found at i:69538639 original size:26 final size:26
Alignment explanation
Indices: 69538584--69538663 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 26
69538574 TATATATTTT
*
69538584 TTTTTAATAACTATATTATGTATGTA
1 TTTTTAATAACTATATTATGTATATA
* *
69538610 TTTTTAA-CACTATTTTATGTATATA
1 TTTTTAATAACTATATTATGTATATA
* * * *
69538635 CTTTTCAT-A-T-TTTTATGTATTTA
1 TTTTTAATAACTATATTATGTATATA
69538658 TTTTTA
1 TTTTTA
69538664 TATATGTACA
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
23 16 0.36
24 1 0.02
25 21 0.47
26 7 0.16
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.60
Consensus pattern (26 bp):
TTTTTAATAACTATATTATGTATATA
Found at i:69546733 original size:28 final size:28
Alignment explanation
Indices: 69546693--69546811 Score: 150
Period size: 28 Copynumber: 4.2 Consensus size: 28
69546683 GCAGTTAGAC
* *
69546693 TGTCCCCCACTTTAGCTTGTACTTGTAT
1 TGTCCGCCACTTTAGCTTGTACTTGGAT
*
69546721 TGTCCACCACTTT-GACTTGTACTTTGGAT
1 TGTCCGCCACTTTAG-CTTGTAC-TTGGAT
* *
69546750 TGTCCGCCATTTTAGCTTGTACTTGGAC
1 TGTCCGCCACTTTAGCTTGTACTTGGAT
*
69546778 TGTCCGCCACTTTAGCTTGCACTTGGAT
1 TGTCCGCCACTTTAGCTTGTACTTGGAT
*
69546806 TTTCCG
1 TGTCCG
69546812 TCATTTTGGC
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 54 0.68
29 23 0.29
30 1 0.01
ACGTcount: A:0.14, C:0.27, G:0.18, T:0.40
Consensus pattern (28 bp):
TGTCCGCCACTTTAGCTTGTACTTGGAT
Found at i:69546764 original size:57 final size:56
Alignment explanation
Indices: 69546693--69546818 Score: 155
Period size: 57 Copynumber: 2.2 Consensus size: 56
69546683 GCAGTTAGAC
* * * * *
69546693 TGTCCCCCACTTTAGCTTGTACTTGTATTGTCCACCACTTT-GACTTGTACTTTGGAT
1 TGTCCGCCATTTTAGCTTGTACTTGGACTGTCCACCACTTTAG-CTTGCAC-TTGGAT
*
69546750 TGTCCGCCATTTTAGCTTGTACTTGGACTGTCCGCCACTTTAGCTTGCACTTGGAT
1 TGTCCGCCATTTTAGCTTGTACTTGGACTGTCCACCACTTTAGCTTGCACTTGGAT
* *
69546806 TTTCCGTCATTTT
1 TGTCCGCCATTTT
69546819 GGCTCTCACT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
56 17 0.28
57 42 0.70
58 1 0.02
ACGTcount: A:0.14, C:0.26, G:0.17, T:0.42
Consensus pattern (56 bp):
TGTCCGCCATTTTAGCTTGTACTTGGACTGTCCACCACTTTAGCTTGCACTTGGAT
Found at i:69554509 original size:17 final size:19
Alignment explanation
Indices: 69554468--69554520 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 19
69554458 TTACTTTGCT
69554468 ATTTTATTATTAAAATTGATTA
1 ATTTTATTATT---ATTGATTA
69554490 ATTTTATT-TTATTG-TTA
1 ATTTTATTATTATTGATTA
69554507 ATTTTATTATTATT
1 ATTTTATTATTATT
69554521 ACTATTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
17 11 0.37
18 9 0.30
21 2 0.07
22 8 0.27
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (19 bp):
ATTTTATTATTATTGATTA
Found at i:69554701 original size:23 final size:23
Alignment explanation
Indices: 69554668--69554721 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
69554658 TCTACTATTG
69554668 TTATTATTAATATACTATTACTA
1 TTATTATTAATATACTATTACTA
* * *
69554691 TTCTTATTAATATATTATTATTA
1 TTATTATTAATATACTATTACTA
69554714 TTATTATT
1 TTATTATT
69554722 TGCTACTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (23 bp):
TTATTATTAATATACTATTACTA
Found at i:69554736 original size:3 final size:3
Alignment explanation
Indices: 69554467--69554721 Score: 109
Period size: 3 Copynumber: 86.3 Consensus size: 3
69554457 GTTACTTTGC
* * *
69554467 TAT T-T TAT TAT TAA AAT TGAT TAAT T-T TAT T-T TAT TGT TAAT T-T
1 TAT TAT TAT TAT TAT TAT T-AT T-AT TAT TAT TAT TAT TAT T-AT TAT
* * *
69554511 TAT TAT TAT TAC TAT TAT TAT TAT TACT T-T TAT TCT T-T TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * * * * * * *
69554555 CAT TAT TGT TAC TGT T-T CTCT TGT TGT TTT TAT TAT TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
69554600 TAT TGT TAG TAT TAT TAT CAT TCCT TAG T-T TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
69554645 T-T TAT TAT TAT TTT CTAC TAT TGT TAT TAT TAA TA- TAC TAT TAC
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
69554689 TAT TCT TAT TAA TA- TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
69554722 TGCTACTTTA
Statistics
Matches: 186, Mismatches: 49, Indels: 34
0.69 0.18 0.13
Matches are distributed among these distances:
2 20 0.11
3 152 0.82
4 14 0.08
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:69554819 original size:3 final size:3
Alignment explanation
Indices: 69554811--69554843 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
69554801 ATTTATTTAC
*
69554811 ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
69554844 TATTTTTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:69555404 original size:25 final size:24
Alignment explanation
Indices: 69555346--69555408 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
69555336 TTAGATTGTA
* *
69555346 TTATACTATTTACTTTAAATTGTTT
1 TTATA-TATTTATTTTAAATCGTTT
*
69555371 TTTTATATTTATTTTAAACTCGTTT
1 TTATATATTTATTTTAAA-TCGTTT
*
69555396 TTATGTA-TTATTT
1 TTATATATTTATTT
69555409 GTTTAAAGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 18 0.56
25 14 0.44
ACGTcount: A:0.25, C:0.06, G:0.05, T:0.63
Consensus pattern (24 bp):
TTATATATTTATTTTAAATCGTTT
Found at i:69556633 original size:97 final size:97
Alignment explanation
Indices: 69556467--69556653 Score: 374
Period size: 97 Copynumber: 1.9 Consensus size: 97
69556457 TAACAGCAGA
69556467 AAGATTAGCATCTATATCAGAATCTTGTTCAACAAGGGTAGTATAAAATATACCTTGTTCTATTG
1 AAGATTAGCATCTATATCAGAATCTTGTTCAACAAGGGTAGTATAAAATATACCTTGTTCTATTG
69556532 CTGCTTGAATCAAGGTTTCTGTCCAATTTCAG
66 CTGCTTGAATCAAGGTTTCTGTCCAATTTCAG
69556564 AAGATTAGCATCTATATCAGAATCTTGTTCAACAAGGGTAGTATAAAATATACCTTGTTCTATTG
1 AAGATTAGCATCTATATCAGAATCTTGTTCAACAAGGGTAGTATAAAATATACCTTGTTCTATTG
69556629 CTGCTTGAATCAAGGTTTCTGTCCA
66 CTGCTTGAATCAAGGTTTCTGTCCA
69556654 TTCTTCTGAA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 90 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (97 bp):
AAGATTAGCATCTATATCAGAATCTTGTTCAACAAGGGTAGTATAAAATATACCTTGTTCTATTG
CTGCTTGAATCAAGGTTTCTGTCCAATTTCAG
Found at i:69558417 original size:20 final size:21
Alignment explanation
Indices: 69558371--69558419 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
69558361 CGGAACCACA
* *
69558371 CTCTTTTTGTCCAAGTTGCTT
1 CTCTTTTTGTCCAACTCGCTT
*
69558392 CTCTTTTTGTCTAACTCGCTT
1 CTCTTTTTGTCCAACTCGCTT
69558413 C-CTTTTT
1 CTCTTTTT
69558420 TCTTAGAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.08, C:0.27, G:0.10, T:0.55
Consensus pattern (21 bp):
CTCTTTTTGTCCAACTCGCTT
Found at i:69561042 original size:34 final size:35
Alignment explanation
Indices: 69561004--69561085 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 35
69560994 GAGCATGTTT
** * *
69561004 TTTGCTACTGAATCAATTTGTTATTAGCATAAT-A
1 TTTGCTACTGAATCAAACTATTATAAGCATAATGA
* *
69561038 TTTGCCATTGAATCAAACTATTATAAGCATAATGA
1 TTTGCTACTGAATCAAACTATTATAAGCATAATGA
69561073 -TTGCTACTAGAAT
1 TTTGCTACT-GAAT
69561086 TTTTTGTTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
34 33 0.87
35 5 0.13
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39
Consensus pattern (35 bp):
TTTGCTACTGAATCAAACTATTATAAGCATAATGA
Found at i:69561410 original size:21 final size:21
Alignment explanation
Indices: 69561353--69561414 Score: 58
Period size: 21 Copynumber: 3.1 Consensus size: 21
69561343 CACCCTTTTT
*
69561353 ATTACCAGTGGTTTATCCAC-
1 ATTACAAGTGGTTTATCCACA
* * **
69561373 A--ACGATTGGTTCGTCCACA
1 ATTACAAGTGGTTTATCCACA
69561392 ATTACAAGTGGTTTATCCACA
1 ATTACAAGTGGTTTATCCACA
69561413 AT
1 AT
69561415 GTTGTGTAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 5
0.70 0.18 0.11
Matches are distributed among these distances:
18 13 0.42
19 1 0.03
20 1 0.03
21 16 0.52
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (21 bp):
ATTACAAGTGGTTTATCCACA
Found at i:69562667 original size:33 final size:34
Alignment explanation
Indices: 69562615--69562678 Score: 89
Period size: 33 Copynumber: 1.9 Consensus size: 34
69562605 TTCAGTCAAA
69562615 ATTTTATAATATTATAAATAA-TATATATTTTATT
1 ATTTTATAATATTATAAATAATTATA-ATTTTATT
69562649 ATTTTA-AATAATT-TAAATAATTATAATTTT
1 ATTTTATAAT-ATTATAAATAATTATAATTTT
69562679 TTACACGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
33 15 0.54
34 13 0.46
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (34 bp):
ATTTTATAATATTATAAATAATTATAATTTTATT
Found at i:69564720 original size:32 final size:31
Alignment explanation
Indices: 69564662--69564721 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
69564652 GTAAATACTC
* * * *
69564662 AAAATTTGAGGGATTAAAGTGTAAATATAAA
1 AAAAGTTGAAGGACTAAAGTGCAAATATAAA
69564693 AAAAGTTGAAGGACTAATAGTGCAAATAT
1 AAAAGTTGAAGGACTAA-AGTGCAAATAT
69564722 TTTAAGGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 14 0.58
32 10 0.42
ACGTcount: A:0.50, C:0.03, G:0.20, T:0.27
Consensus pattern (31 bp):
AAAAGTTGAAGGACTAAAGTGCAAATATAAA
Found at i:69570999 original size:14 final size:14
Alignment explanation
Indices: 69570980--69571019 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
69570970 TTGATTGCTA
69570980 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
69570994 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
69571008 GGAAAATGTTTT
1 GTAAAATGTTTT
69571020 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:69571028 original size:20 final size:20
Alignment explanation
Indices: 69571003--69571042 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
69570993 CGTAAAATGA
*
69571003 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
69571023 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
69571043 AGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:69571032 original size:34 final size:35
Alignment explanation
Indices: 69570988--69571054 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
69570978 TAGTAAAATG
* *
69570988 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTAGAAAATATTTTAC
*
69571022 TTTTCTGTAAAATGATTTACTAGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTAGAAAATATTTT
69571055 TTGCTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTAGAAAATATTTTAC
Found at i:69572630 original size:29 final size:28
Alignment explanation
Indices: 69572598--69572666 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 28
69572588 TAAAAAATAT
* *
69572598 TAAAAATTGATATAAACTTATTAGA-ATTA
1 TAAAAATT-ATAAAAACTTA-TAAATATTA
*
69572627 TAAAAAAATATAAAAACTTATAAATATTA
1 T-AAAAATTATAAAAACTTATAAATATTA
69572656 TAAAAA-TATAA
1 TAAAAATTATAA
69572667 TAAATCCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
27 5 0.14
28 8 0.23
29 16 0.46
30 6 0.17
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (28 bp):
TAAAAATTATAAAAACTTATAAATATTA
Found at i:69572648 original size:10 final size:9
Alignment explanation
Indices: 69572573--69572671 Score: 60
Period size: 9 Copynumber: 10.7 Consensus size: 9
69572563 TGACAAATAG
*
69572573 AAAAAATAT
1 AAAAATTAT
*
69572582 AAATATTA-
1 AAAAATTAT
69572590 AAAAA-TATT
1 AAAAATTA-T
69572599 AAAAATTGAT
1 AAAAATT-AT
*
69572609 ATAAACTTAT
1 A-AAAATTAT
* *
69572619 TAGAATTAT
1 AAAAATTAT
*
69572628 AAAAAAATAT
1 -AAAAATTAT
69572638 AAAAACTTAT
1 AAAAA-TTAT
*
69572648 AAATATTAT
1 AAAAATTAT
69572657 AAAAA-TAT
1 AAAAATTAT
69572665 AATAAAT
1 AA-AAAT
69572672 CCAAATAAGT
Statistics
Matches: 68, Mismatches: 13, Indels: 17
0.69 0.13 0.17
Matches are distributed among these distances:
7 2 0.03
8 9 0.13
9 33 0.49
10 18 0.26
11 6 0.09
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:69572789 original size:21 final size:21
Alignment explanation
Indices: 69572765--69572804 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
69572755 TAAAACTAAT
69572765 AAAAAT-TGTAAAAAAATTATA
1 AAAAATAT-TAAAAAAATTATA
*
69572786 AAAAATATTAAAAATATTA
1 AAAAATATTAAAAAAATTA
69572805 AAATTGACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (21 bp):
AAAAATATTAAAAAAATTATA
Found at i:69573310 original size:10 final size:10
Alignment explanation
Indices: 69573297--69573353 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 10
69573287 AATACTTTTT
*
69573297 ATTTTTAATC
1 ATTTTTAATA
69573307 A-TTTTAATA
1 ATTTTTAATA
*
69573316 ATTTTAAATA
1 ATTTTTAATA
69573326 ATTTTT-ATA
1 ATTTTTAATA
*
69573335 GAATTTTAATA
1 -ATTTTTAATA
69573346 CATTTTTA
1 -ATTTTTA
69573354 TAAAATCTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
9 11 0.29
10 18 0.47
11 9 0.24
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.56
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:69573341 original size:21 final size:21
Alignment explanation
Indices: 69573315--69573371 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
69573305 TCATTTTAAT
*
69573315 AATTTTAAATAATTTTTATAG
1 AATTTTAAATAATTTTTATAA
69573336 AATTTT-AATACATTTTTATAA
1 AATTTTAAATA-ATTTTTATAA
*
69573357 AATCTTAAAT-ATTTT
1 AATTTTAAATAATTTT
69573372 AAATATGCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 9 0.28
21 20 0.62
22 3 0.09
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (21 bp):
AATTTTAAATAATTTTTATAA
Found at i:69573432 original size:9 final size:10
Alignment explanation
Indices: 69573418--69573518 Score: 50
Period size: 10 Copynumber: 10.3 Consensus size: 10
69573408 TATTAGAATT
69573418 TTTTTTAT-A
1 TTTTTTATCA
*
69573427 TTTTTTATAA
1 TTTTTTATCA
* *
69573437 GTTTATATCA
1 TTTTTTATCA
* *
69573447 ATTTTCAT-A
1 TTTTTTATCA
69573456 TTTTTT-TCA
1 TTTTTTATCA
69573465 TATTTTTAT-A
1 T-TTTTTATCA
* *
69573475 ATTTTTATGA
1 TTTTTTATCA
*
69573485 TTTTTT-TTA
1 TTTTTTATCA
*
69573494 TGATTTTTATGA
1 T--TTTTTATCA
*
69573506 TTTTTAATCA
1 TTTTTTATCA
69573516 TTT
1 TTT
69573519 ATGAGAAAAA
Statistics
Matches: 70, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
8 1 0.01
9 25 0.36
10 35 0.50
11 6 0.09
12 3 0.04
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (10 bp):
TTTTTTATCA
Found at i:69573450 original size:32 final size:32
Alignment explanation
Indices: 69573388--69573451 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
69573378 GCTTTATTAA
*
69573388 TTTTATCATTTTTTAGAATTTATTAGAATTTT
1 TTTTATCATTTTTTAGAATTTATTACAATTTT
*
69573420 TTTTAT-ATTTTTTATAAGTTTA-TATCAATTTT
1 TTTTATCATTTTTTAGAA-TTTATTA-CAATTTT
69573452 CATATTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 12 0.43
32 16 0.57
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (32 bp):
TTTTATCATTTTTTAGAATTTATTACAATTTT
Found at i:69573488 original size:8 final size:9
Alignment explanation
Indices: 69573466--69573511 Score: 56
Period size: 9 Copynumber: 4.8 Consensus size: 9
69573456 TTTTTTTCAT
*
69573466 ATTTTTATA
1 ATTTTTATG
69573475 ATTTTTATG
1 ATTTTTATG
69573484 ATTTTTTTTATG
1 A---TTTTTATG
69573496 ATTTTTATG
1 ATTTTTATG
69573505 ATTTTTA
1 ATTTTTA
69573512 ATCATTTATG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
9 24 0.73
12 9 0.27
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.70
Consensus pattern (9 bp):
ATTTTTATG
Found at i:69573491 original size:21 final size:21
Alignment explanation
Indices: 69573467--69573510 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
69573457 TTTTTTCATA
69573467 TTTTTATAATTTTTATGATTT
1 TTTTTATAATTTTTATGATTT
*
69573488 TTTTTATGATTTTTATGATTT
1 TTTTTATAATTTTTATGATTT
69573509 TT
1 TT
69573511 AATCATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (21 bp):
TTTTTATAATTTTTATGATTT
Found at i:69573493 original size:12 final size:12
Alignment explanation
Indices: 69573476--69573501 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69573466 ATTTTTATAA
69573476 TTTTTATGATTT
1 TTTTTATGATTT
69573488 TTTTTATGATTT
1 TTTTTATGATTT
69573500 TT
1 TT
69573502 ATGATTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (12 bp):
TTTTTATGATTT
Found at i:69573694 original size:29 final size:28
Alignment explanation
Indices: 69573657--69573712 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
69573647 AATCAATGAC
* * *
69573657 AGGGCTTAATAGGGTACGGATTTTATAT
1 AGGGCTTAACAGAGTACGAATTTTATAT
*
69573685 AGGGACTTAACAGAGTTCGAATTTTATA
1 AGGG-CTTAACAGAGTACGAATTTTATA
69573713 CAAGAACTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.34
Consensus pattern (28 bp):
AGGGCTTAACAGAGTACGAATTTTATAT
Found at i:69588955 original size:6 final size:6
Alignment explanation
Indices: 69588946--69588970 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
69588936 AAGAATAAGA
69588946 ACAAGC ACAAGC ACAAGC ACAAGC A
1 ACAAGC ACAAGC ACAAGC ACAAGC A
69588971 AATGTTTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.32, G:0.16, T:0.00
Consensus pattern (6 bp):
ACAAGC
Found at i:69593182 original size:39 final size:39
Alignment explanation
Indices: 69593092--69593187 Score: 105
Period size: 39 Copynumber: 2.5 Consensus size: 39
69593082 GATATTTTTG
*
69593092 ATATATAA-AT-ATATATTATATATTATATTAACTTAAT
1 ATATATAATATAATATATAATATATTATATTAACTTAAT
69593129 AT-T-TAAGTATTAATATATAATATATTATATT-A-TTATATT
1 ATATATAA-TA-TAATATATAATATATTATATTAACTTA-A-T
69593168 ATATATAATATAATATATAA
1 ATATATAATATAATATATAA
69593188 AACATAAGTA
Statistics
Matches: 50, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
35 3 0.06
36 1 0.02
37 6 0.12
38 3 0.06
39 31 0.62
40 3 0.06
41 3 0.06
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (39 bp):
ATATATAATATAATATATAATATATTATATTAACTTAAT
Found at i:69593187 original size:7 final size:7
Alignment explanation
Indices: 69593092--69593187 Score: 60
Period size: 7 Copynumber: 14.1 Consensus size: 7
69593082 GATATTTTTG
69593092 ATATATAA
1 ATATAT-A
69593100 ATATATA
1 ATATATA
*
69593107 TTATATA
1 ATATATA
*
69593114 TTATATTA
1 ATATA-TA
*
69593122 A-CT-TA
1 ATATATA
*
69593127 ATATTTA
1 ATATATA
69593134 AGTAT-TA
1 A-TATATA
69593141 ATATATA
1 ATATATA
*
69593148 ATATATT
1 ATATATA
69593155 ATAT-TA
1 ATATATA
* *
69593161 TTATATT
1 ATATATA
69593168 ATATAT-
1 ATATATA
69593174 A-ATATA
1 ATATATA
69593180 ATATATA
1 ATATATA
69593187 A
1 A
69593188 AACATAAGTA
Statistics
Matches: 71, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
5 7 0.10
6 10 0.14
7 43 0.61
8 11 0.15
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (7 bp):
ATATATA
Found at i:69594437 original size:22 final size:23
Alignment explanation
Indices: 69594379--69594444 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 23
69594369 GTTCTATTAT
* * *
69594379 TAGCACATTAAGTGCTCTATGTT
1 TAGCACATTTAGTGCTCTCTGTA
*
69594402 TAGCACATCT-GTGCTCTCTGTA
1 TAGCACATTTAGTGCTCTCTGTA
69594424 TAGCAC-TTTAGTGCTCTCTGT
1 TAGCACATTTAGTGCTCTCTGT
69594445 TCGTTTGTGC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 2 0.05
22 27 0.73
23 8 0.22
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (23 bp):
TAGCACATTTAGTGCTCTCTGTA
Found at i:69597585 original size:13 final size:13
Alignment explanation
Indices: 69597567--69597592 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69597557 GGGTCGTCAC
69597567 ATTCTTATGTTAA
1 ATTCTTATGTTAA
69597580 ATTCTTATGTTAA
1 ATTCTTATGTTAA
69597593 TACAAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (13 bp):
ATTCTTATGTTAA
Found at i:69601894 original size:159 final size:159
Alignment explanation
Indices: 69601632--69601949 Score: 636
Period size: 159 Copynumber: 2.0 Consensus size: 159
69601622 GAAGAAAAGG
69601632 GAAAAATAAAAGAAAAAGGAAACTTAAGGTTTTGAAGCCTCAAGCTTAATTTGGTAAGTCAATTA
1 GAAAAATAAAAGAAAAAGGAAACTTAAGGTTTTGAAGCCTCAAGCTTAATTTGGTAAGTCAATTA
69601697 AGTCCCTTTCTTTATAATTTTGATGTTTTTAGAGTTCTAGAGACAAATATTACTTGATCTAAGTG
66 AGTCCCTTTCTTTATAATTTTGATGTTTTTAGAGTTCTAGAGACAAATATTACTTGATCTAAGTG
69601762 GAAATTTTGAAAGTGAGGAGATTTTTAGA
131 GAAATTTTGAAAGTGAGGAGATTTTTAGA
69601791 GAAAAATAAAAGAAAAAGGAAACTTAAGGTTTTGAAGCCTCAAGCTTAATTTGGTAAGTCAATTA
1 GAAAAATAAAAGAAAAAGGAAACTTAAGGTTTTGAAGCCTCAAGCTTAATTTGGTAAGTCAATTA
69601856 AGTCCCTTTCTTTATAATTTTGATGTTTTTAGAGTTCTAGAGACAAATATTACTTGATCTAAGTG
66 AGTCCCTTTCTTTATAATTTTGATGTTTTTAGAGTTCTAGAGACAAATATTACTTGATCTAAGTG
69601921 GAAATTTTGAAAGTGAGGAGATTTTTAGA
131 GAAATTTTGAAAGTGAGGAGATTTTTAGA
69601950 CATGGGTTAT
Statistics
Matches: 159, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
159 159 1.00
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (159 bp):
GAAAAATAAAAGAAAAAGGAAACTTAAGGTTTTGAAGCCTCAAGCTTAATTTGGTAAGTCAATTA
AGTCCCTTTCTTTATAATTTTGATGTTTTTAGAGTTCTAGAGACAAATATTACTTGATCTAAGTG
GAAATTTTGAAAGTGAGGAGATTTTTAGA
Found at i:69601935 original size:319 final size:314
Alignment explanation
Indices: 69601235--69601808 Score: 927
Period size: 319 Copynumber: 1.8 Consensus size: 314
69601225 ATATAATAAT
* *
69601235 AATAAAGCATAAAATAATAATAAAAGAAACAAAAGAAAAAGAAACAGAAGCAATTTGAAAGTGGG
1 AATAAAGCATAAAATAAGAATAAAAGAAACAAAAGAAAAAGAAACAGAAGAAATTTGAAAGTGGG
69601300 AAGGAAGAAAAGGGAAAAATAAAAGAAAAAGGAAACTTAAGGTTTTGAAGCCTCAAGCTTAATTT
66 AAGGAAGAAAAGGGAAAAATAAAAGAAAAAGGAAACTTAAGGTTTTGAAGCCTCAAGCTTAATTT
69601365 GGTAAGTCAATTAAGTCCCTTTCTTTATAATTTTGATGTTTTTAGAGTTCTAGAGACAAATATTA
131 GGTAAGTCAATTAAGTCCCTTTCTTTATAATTTTGATGTTTTTAGAGTTCTAGAGACAAATATTA
** ** * **
69601430 CTTGATCTAAGTGGAAATTTTGAAAGTGAGGAGATTTTTAGACATGGGTTATGTTAAACAAATTG
196 CTTGATCTAAGTGGAAATTTTGAAAGTGAGGAGATTTTTAGA-A--GGAAAAATAAAACAAAAAG
* * ** **
69601495 TTGAATTAGGGATTTAATTGAATAAATATCAAGTTAGAATTGATTAATGGATTAAATTA
258 -TGAATTAAGGATTTAA-TGAATAAAGATCAAGTTAGAATCAATTAATCCATTAAATTA
* *
69601554 AATAAAGCATAAAATAATAATAAAAGAAACAAAAGAAAAAGAAACAGAAGCAATTTGAAAGTGGG
1 AATAAAGCATAAAATAAGAATAAAAGAAACAAAAGAAAAAGAAACAGAAGAAATTTGAAAGTGGG
69601619 AAGGAAGAAAAGGGAAAAATAAAAGAAAAAGGAAACTTAAGGTTTTGAAGCCTCAAGCTTAATTT
66 AAGGAAGAAAAGGGAAAAATAAAAGAAAAAGGAAACTTAAGGTTTTGAAGCCTCAAGCTTAATTT
69601684 GGTAAGTCAATTAAGTCCCTTTCTTTATAATTTTGATGTTTTTAGAGTTCTAGAGACAAATATTA
131 GGTAAGTCAATTAAGTCCCTTTCTTTATAATTTTGATGTTTTTAGAGTTCTAGAGACAAATATTA
*
69601749 CTTGATCTAAGTGGAAATTTTGAAAGTGAGGAGATTTTTAG-A-GAAAAATAAAAGAAAAAG
196 CTTGATCTAAGTGGAAATTTTGAAAGTGAGGAGATTTTTAGAAGGAAAAATAAAACAAAAAG
69601809 GAAACTTAAG
Statistics
Matches: 247, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
314 10 0.04
317 1 0.00
319 236 0.96
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (314 bp):
AATAAAGCATAAAATAAGAATAAAAGAAACAAAAGAAAAAGAAACAGAAGAAATTTGAAAGTGGG
AAGGAAGAAAAGGGAAAAATAAAAGAAAAAGGAAACTTAAGGTTTTGAAGCCTCAAGCTTAATTT
GGTAAGTCAATTAAGTCCCTTTCTTTATAATTTTGATGTTTTTAGAGTTCTAGAGACAAATATTA
CTTGATCTAAGTGGAAATTTTGAAAGTGAGGAGATTTTTAGAAGGAAAAATAAAACAAAAAGTGA
ATTAAGGATTTAATGAATAAAGATCAAGTTAGAATCAATTAATCCATTAAATTA
Found at i:69604293 original size:16 final size:16
Alignment explanation
Indices: 69604272--69604305 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
69604262 ACTTGTGTTA
69604272 TTGTGTGAACTCATGT
1 TTGTGTGAACTCATGT
69604288 TTGTGTGAACTCATGT
1 TTGTGTGAACTCATGT
69604304 TT
1 TT
69604306 TACGTTGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.24, T:0.47
Consensus pattern (16 bp):
TTGTGTGAACTCATGT
Found at i:69606421 original size:46 final size:46
Alignment explanation
Indices: 69606277--69606526 Score: 380
Period size: 46 Copynumber: 5.5 Consensus size: 46
69606267 TATTCATTTA
*
69606277 TATCTTTCAACCATGGTCTTATTTATTTCCTGTCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGG
* * *
69606323 TATCTTTCAGCCATGGTCTT-TTCACTTCCTATCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGG
*
69606368 TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGCTT-CCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATG-TTGCCATGG
69606414 TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGG
* * *
69606460 TATCTTTCAACCATGGTCTTATTCATTT-CTCATCATATTGCCATAG
1 TATCTTTCAACCATGGTCTTATTCATTTCCT-GTCATGTTGCCATGG
*
69606506 TATCTTTCAACTATGGTCTTA
1 TATCTTTCAACCATGGTCTTA
69606527 CATATCTGAA
Statistics
Matches: 187, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
45 45 0.24
46 140 0.75
47 2 0.01
ACGTcount: A:0.19, C:0.24, G:0.13, T:0.44
Consensus pattern (46 bp):
TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGG
Found at i:69606567 original size:137 final size:136
Alignment explanation
Indices: 69606278--69606559 Score: 372
Period size: 137 Copynumber: 2.1 Consensus size: 136
69606268 ATTCATTTAT
* *
69606278 ATCTTTCAACCATGGTCTTATTTATTTCCTGTCATGTTGCCATGGTATCTTTCAGCCATGGTCTT
1 ATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTT
* * * * *
69606343 TTCACTTCCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGCTT
66 TTCACTTCCTATCATATTGCCATAGTATCTTTCAACCATGGTCTTA-TCATTATCTGTCATGATG
***
69606408 CCATGGT
130 CCATAAC
69606415 ATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTT
1 ATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTT
* * *
69606480 ATTCA-TTTCTCATCATATTGCCATAGTATCTTTCAACTATGGTCTTA-CA-TATCTGAATCGTG
66 -TTCACTTCCT-ATCATATTGCCATAGTATCTTTCAACCATGGTCTTATCATTATCTG--TCATG
69606542 ATGCCATAAC
127 ATGCCATAAC
*
69606552 GTCTTTCA
1 ATCTTTCA
69606560 GCTATGGTTA
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
135 5 0.04
136 2 0.02
137 83 0.65
138 37 0.29
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (136 bp):
ATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTT
TTCACTTCCTATCATATTGCCATAGTATCTTTCAACCATGGTCTTATCATTATCTGTCATGATGC
CATAAC
Found at i:69606594 original size:43 final size:44
Alignment explanation
Indices: 69606508--69606619 Score: 138
Period size: 43 Copynumber: 2.5 Consensus size: 44
69606498 TGCCATAGTA
* * **
69606508 TCTTTCAACTATGGTCTTACAT-ATCTGAATCGTGATGCCATAACG
1 TCTTTCAGCTATGG-CTTAC-TCGTCTGAATCACGATGCCATAACG
*
69606553 TCTTTCAGCTATGG-TTACTCGTCTGAATCACGATGCTATAACG
1 TCTTTCAGCTATGGCTTACTCGTCTGAATCACGATGCCATAACG
69606596 TCTTTCAGCTATGGCCTTACTCGT
1 TCTTTCAGCTATGG-CTTACTCGT
69606620 TTCTGGTATG
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.02
43 37 0.63
45 21 0.36
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (44 bp):
TCTTTCAGCTATGGCTTACTCGTCTGAATCACGATGCCATAACG
Found at i:69617901 original size:9 final size:9
Alignment explanation
Indices: 69617889--69617996 Score: 67
Period size: 9 Copynumber: 11.4 Consensus size: 9
69617879 ATTTTAAATA
69617889 TTTTTATAT
1 TTTTTATAT
69617898 TTTTGTA-AT
1 TTTT-TATAT
*
69617907 TTTTT-TACGA
1 TTTTTATA--T
69617917 TTTTTATAT
1 TTTTTATAT
69617926 TTTTTATAT
1 TTTTTATAT
**
69617935 TTTCTTGCACT
1 TTT-TTATA-T
*
69617946 TTTCTATAT
1 TTTTTATAT
*
69617955 TTTTTACAT
1 TTTTTATAT
*
69617964 TTGTTATGAT
1 TTTTTAT-AT
* *
69617974 TTTCTATAA
1 TTTTTATAT
69617983 TTTTTATGAT
1 TTTTTAT-AT
69617993 TTTT
1 TTTT
69617997 AACAATTTTA
Statistics
Matches: 74, Mismatches: 16, Indels: 17
0.69 0.15 0.16
Matches are distributed among these distances:
8 2 0.03
9 42 0.57
10 24 0.32
11 6 0.08
ACGTcount: A:0.20, C:0.06, G:0.06, T:0.68
Consensus pattern (9 bp):
TTTTTATAT
Found at i:69617948 original size:20 final size:19
Alignment explanation
Indices: 69617924--69617987 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
69617914 CGATTTTTAT
*
69617924 ATTTTTTATATTTTCTTGC
1 ATTTTTTATATTTTCTTAC
*
69617943 ACTTTTCTATATTTT-TTAC
1 A-TTTTTTATATTTTCTTAC
*
69617962 ATTTGTTATGATTTTCTATA-
1 ATTTTTTAT-ATTTTCT-TAC
69617982 ATTTTT
1 ATTTTT
69617988 ATGATTTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
18 6 0.17
19 10 0.28
20 18 0.50
21 2 0.06
ACGTcount: A:0.20, C:0.09, G:0.05, T:0.66
Consensus pattern (19 bp):
ATTTTTTATATTTTCTTAC
Found at i:69617953 original size:29 final size:27
Alignment explanation
Indices: 69617888--69617997 Score: 100
Period size: 28 Copynumber: 3.9 Consensus size: 27
69617878 AATTTTAAAT
* *
69617888 ATTTT-TATATTTTTGTAATTTTTTTACG
1 ATTTTCTATATTTTT-T-ATATTTTTATG
69617916 ATTTT-TATATTTTTTATATTTTCT-TG
1 ATTTTCTATATTTTTTATATTTT-TATG
*
69617942 CACTTTTCTATATTTTTTACATTTGTTATG
1 -A-TTTTCTATATTTTTTATATTT-TTATG
*
69617972 ATTTTCTATAATTTTTATGATTTTTA
1 ATTTTCTATATTTTTTAT-ATTTTTA
69617998 ACAATTTTAA
Statistics
Matches: 70, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
26 7 0.10
27 3 0.04
28 36 0.51
29 21 0.30
30 3 0.04
ACGTcount: A:0.22, C:0.06, G:0.05, T:0.66
Consensus pattern (27 bp):
ATTTTCTATATTTTTTATATTTTTATG
Found at i:69617989 original size:19 final size:17
Alignment explanation
Indices: 69617888--69617996 Score: 62
Period size: 19 Copynumber: 5.9 Consensus size: 17
69617878 AATTTTAAAT
69617888 ATTTTTAT-ATTTTTGTA
1 ATTTTTATGATTTTT-TA
*
69617905 ATTTTTTTACGATTTTTATA
1 A--TTTTTATGATTTTT-TA
*
69617925 TTTTTTAT-ATTTTCTTGCA
1 ATTTTTATGATTTT-TT--A
*
69617944 CTTTTCTAT-ATTTTTTA
1 ATTTT-TATGATTTTTTA
69617961 CATTTGTTATGATTTTCTATA
1 -ATTT-TTATGATTTT-T-TA
69617982 ATTTTTATGATTTTT
1 ATTTTTATGATTTTT
69617997 AACAATTTTA
Statistics
Matches: 74, Mismatches: 6, Indels: 23
0.72 0.06 0.22
Matches are distributed among these distances:
17 8 0.11
18 14 0.19
19 29 0.39
20 21 0.28
21 2 0.03
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.67
Consensus pattern (17 bp):
ATTTTTATGATTTTTTA
Found at i:69618003 original size:19 final size:18
Alignment explanation
Indices: 69617955--69618005 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
69617945 TTTTCTATAT
69617955 TTTTTAC-ATTTGTTATGA
1 TTTTTACAATTT-TTATGA
*
69617973 TTTTCTATAATTTTTATGA
1 TTTT-TACAATTTTTATGA
69617992 TTTTTAACAATTTT
1 TTTTT-ACAATTTT
69618006 AAATAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 5 0.18
19 19 0.68
20 4 0.14
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.63
Consensus pattern (18 bp):
TTTTTACAATTTTTATGA
Found at i:69618629 original size:29 final size:26
Alignment explanation
Indices: 69618544--69618617 Score: 94
Period size: 29 Copynumber: 2.7 Consensus size: 26
69618534 ATCGACTCAA
69618544 ATTTTAAATAAATTAAAAAATAAATAT
1 ATTTTAAAT-AATTAAAAAATAAATAT
* *
69618571 ATTTATTATATATTATAAAAAATAAATAT
1 A-TT-TTAAATAAT-TAAAAAATAAATAT
69618600 ATTTTAAATAATTAAAAA
1 ATTTTAAATAATTAAAAA
69618618 TGATATAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 6 0.15
27 8 0.20
28 6 0.15
29 20 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (26 bp):
ATTTTAAATAATTAAAAAATAAATAT
Found at i:69623695 original size:18 final size:18
Alignment explanation
Indices: 69623628--69623683 Score: 78
Period size: 18 Copynumber: 3.1 Consensus size: 18
69623618 AGTCACTCTT
*
69623628 TAACAGTCAGTTATTCAG
1 TAACAGTCAATTATTCAG
*
69623646 TAAC-GATAAATTATTCAG
1 TAACAG-TCAATTATTCAG
69623664 TAACAGTCAATTATTCAG
1 TAACAGTCAATTATTCAG
69623682 TA
1 TA
69623684 GTAGTCAGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 1 0.03
18 31 0.94
19 1 0.03
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (18 bp):
TAACAGTCAATTATTCAG
Found at i:69624661 original size:15 final size:17
Alignment explanation
Indices: 69624622--69624668 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 17
69624612 TAATAACAAT
69624622 AAAATATTTATATTAAA
1 AAAATATTTATATTAAA
**
69624639 AATCTATTTA-A-TAAA
1 AAAATATTTATATTAAA
69624654 AAAATATTTAT-TTAA
1 AAAATATTTATATTAA
69624669 CACTTGTATG
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
15 12 0.50
16 4 0.17
17 8 0.33
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
AAAATATTTATATTAAA
Found at i:69630098 original size:26 final size:26
Alignment explanation
Indices: 69630067--69630174 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
69630057 TGAAATGCCC
*
69630067 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
69630093 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
69630119 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
69630145 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
69630171 ATCA
1 ATCA
69630175 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:69637194 original size:26 final size:26
Alignment explanation
Indices: 69637163--69637244 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
69637153 TGAAATGCCC
*
69637163 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
69637189 ATCATGGAACATTTAGCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
69637215 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
69637241 ATCA
1 ATCA
69637245 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.24, G:0.09, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:69642848 original size:45 final size:44
Alignment explanation
Indices: 69642775--69642895 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 44
69642765 CAATTAATGA
* *
69642775 ATAATAAAATAATACATAATTTATAATAAAATGTAGGAAATAATATAT
1 ATAATAAAAT-A-A-ATAATATATAATAAAATGTA-GAAATAAAATAT
* * * * * *
69642823 ATAGTAAAATATATAATGTATAATAAAATTTATAAATAAAATGT
1 ATAATAAAATAAATAATATATAATAAAATGTAGAAATAAAATAT
*
69642867 ATAATAATATAAATAATATAATAATAAAA
1 ATAATAAAATAAATAATAT-ATAATAAAA
69642896 ATAATTTGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
44 24 0.39
45 27 0.44
47 1 0.02
48 9 0.15
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (44 bp):
ATAATAAAATAAATAATATATAATAAAATGTAGAAATAAAATAT
Found at i:69642856 original size:12 final size:12
Alignment explanation
Indices: 69642837--69642873 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
69642827 TAAAATATAT
69642837 AATGTATAATAA
1 AATGTATAATAA
*
69642849 AATTTATAAATAA
1 AATGTAT-AATAA
69642862 AATGTATAATAA
1 AATGTATAATAA
69642874 TATAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:69642862 original size:13 final size:13
Alignment explanation
Indices: 69642837--69642870 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
69642827 TAAAATATAT
69642837 AATGTAT-AATAA
1 AATGTATAAATAA
*
69642849 AATTTATAAATAA
1 AATGTATAAATAA
69642862 AATGTATAA
1 AATGTATAA
69642871 TAATATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:69642882 original size:25 final size:26
Alignment explanation
Indices: 69642830--69642887 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
69642820 TATATAGTAA
* **
69642830 AATATATAATGTATAATAAAATTTAT
1 AATATAAAATGTATAATAAAATAAAT
*
69642856 AA-ATAAAATGTATAATAATATAAAT
1 AATATAAAATGTATAATAAAATAAAT
69642881 AATATAA
1 AATATAA
69642888 TAATAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 21 0.78
26 6 0.22
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (26 bp):
AATATAAAATGTATAATAAAATAAAT
Found at i:69646077 original size:18 final size:18
Alignment explanation
Indices: 69646054--69646089 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
69646044 TGTGATATTT
69646054 TATTTAATTAG-TAAAATA
1 TATTT-ATTAGATAAAATA
69646072 TATTTATTAGATAAAATA
1 TATTTATTAGATAAAATA
69646090 ATTAAATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (18 bp):
TATTTATTAGATAAAATA
Found at i:69648030 original size:48 final size:48
Alignment explanation
Indices: 69647978--69648080 Score: 136
Period size: 48 Copynumber: 2.1 Consensus size: 48
69647968 TCTCTAATGG
*
69647978 TTGACTGTTACTAAATAATAAAGATCAATTGATTGC-TACTGAAAAATA
1 TTGACTGTTACTAAATAATAAAGATAAATTGATT-CATACTGAAAAATA
* * ** *
69648026 TTGACTGTTACTGAATGATATTGATAAATTGATTCATATTGAAAAATA
1 TTGACTGTTACTAAATAATAAAGATAAATTGATTCATACTGAAAAATA
69648074 TTGACTG
1 TTGACTG
69648081 ATATTGAGCT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
47 1 0.02
48 47 0.98
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.37
Consensus pattern (48 bp):
TTGACTGTTACTAAATAATAAAGATAAATTGATTCATACTGAAAAATA
Found at i:69649654 original size:139 final size:139
Alignment explanation
Indices: 69649404--69649678 Score: 532
Period size: 139 Copynumber: 2.0 Consensus size: 139
69649394 ATTTACTAAG
69649404 TAAAGGATTCCGAAAGGACCTAATGTGGTTTTCAAACTCATGAAACATCGAGTTGCCATGGAATG
1 TAAAGGATTCCGAAAGGACCTAATGTGGTTTTCAAACTCATGAAACATCGAGTTGCCATGGAATG
69649469 TTTTTCCGAATGTTATTAAGCATGTTGATAATAAATTGAGTTTAATTAAAGTAATTGTCCTAGTT
66 TTTTTCCGAATGTTATTAAGCATGTTGATAATAAATTGAGTTTAATTAAAGTAATTGTCCTAGTT
69649534 TATTTACAT
131 TATTTACAT
**
69649543 TAAAGGATTTTGAAAGGACCTAATGTGGTTTTCAAACTCATGAAACATCGAGTTGCCATGGAATG
1 TAAAGGATTCCGAAAGGACCTAATGTGGTTTTCAAACTCATGAAACATCGAGTTGCCATGGAATG
69649608 TTTTTCCGAATGTTATTAAGCATGTTGATAATAAATTGAGTTTAATTAAAGTAATTGTCCTAGTT
66 TTTTTCCGAATGTTATTAAGCATGTTGATAATAAATTGAGTTTAATTAAAGTAATTGTCCTAGTT
69649673 TATTTA
131 TATTTA
69649679 TGTTATAATT
Statistics
Matches: 134, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
139 134 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.37
Consensus pattern (139 bp):
TAAAGGATTCCGAAAGGACCTAATGTGGTTTTCAAACTCATGAAACATCGAGTTGCCATGGAATG
TTTTTCCGAATGTTATTAAGCATGTTGATAATAAATTGAGTTTAATTAAAGTAATTGTCCTAGTT
TATTTACAT
Found at i:69653111 original size:14 final size:14
Alignment explanation
Indices: 69653076--69653102 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
69653066 TTTCTTGATT
69653076 GAAAATGATTTCTA
1 GAAAATGATTTCTA
69653090 GAAAATGATTTCT
1 GAAAATGATTTCT
69653103 GGAATATGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (14 bp):
GAAAATGATTTCTA
Found at i:69653461 original size:13 final size:13
Alignment explanation
Indices: 69653443--69653474 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
69653433 TTCAAACCAC
*
69653443 AATTAATACTACA
1 AATTAACACTACA
69653456 AATTAACACTACA
1 AATTAACACTACA
69653469 AATTAA
1 AATTAA
69653475 ATATATAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTAACACTACA
Found at i:69653548 original size:19 final size:19
Alignment explanation
Indices: 69653521--69653557 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
69653511 TTCCAAGTGT
69653521 ATAACTAGTATTACACCAC
1 ATAACTAGTATTACACCAC
*
69653540 ATAATTAGTATTACACCA
1 ATAACTAGTATTACACCA
69653558 TATTAAAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.22, G:0.05, T:0.30
Consensus pattern (19 bp):
ATAACTAGTATTACACCAC
Found at i:69658865 original size:21 final size:22
Alignment explanation
Indices: 69658821--69658872 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
69658811 TTTCTAATTC
* *
69658821 TGATATGTTTTGCATCTGTATT
1 TGATCTGTTCTGCATCTGTATT
69658843 TGATCTGTTCTGCATCT-TATT
1 TGATCTGTTCTGCATCTGTATT
*
69658864 TGAACTGTT
1 TGATCTGTT
69658873 ATGATAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.52
Consensus pattern (22 bp):
TGATCTGTTCTGCATCTGTATT
Found at i:69665607 original size:2 final size:2
Alignment explanation
Indices: 69665600--69665634 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
69665590 ATTTTTCTTT
* *
69665600 TA TA TA TA TA TA TA TA TA TT TA TA AA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
69665635 GTGTTGTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:69666445 original size:16 final size:16
Alignment explanation
Indices: 69666409--69666452 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
69666399 AGTTTATTAT
*
69666409 ATAAAA-ATGATTTTA
1 ATAAAATATTATTTTA
69666424 ATTAAAATATTATTTTA
1 A-TAAAATATTATTTTA
69666441 ATAAAATGATTA
1 ATAAAAT-ATTA
69666453 AATTTCATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 1 0.04
16 11 0.44
17 13 0.52
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (16 bp):
ATAAAATATTATTTTA
Found at i:69666641 original size:32 final size:33
Alignment explanation
Indices: 69666580--69666651 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 33
69666570 TTATAAATTT
* *
69666580 ATAAATTAATTACTTGAATTTAGTGACTCA-TG
1 ATAAATTAATTAATTGAATTTAGTAACTCATTG
*
69666612 ATAAATTAATTAATTTAATTT-GATAACTCATTG
1 ATAAATTAATTAATTGAATTTAG-TAACTCATTG
*
69666645 ATTAATT
1 ATAAATT
69666652 GAACTTGTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 1 0.03
32 25 0.74
33 8 0.24
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.44
Consensus pattern (33 bp):
ATAAATTAATTAATTGAATTTAGTAACTCATTG
Found at i:69668193 original size:20 final size:21
Alignment explanation
Indices: 69668152--69668193 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
69668142 TCTAATTTTG
*
69668152 TTTCATTTAAAATATAAAATT
1 TTTCATATAAAATATAAAATT
*
69668173 TTTCATATAAAA-ATAATATT
1 TTTCATATAAAATATAAAATT
69668193 T
1 T
69668194 ATTTTCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTCATATAAAATATAAAATT
Found at i:69668359 original size:31 final size:31
Alignment explanation
Indices: 69668324--69668383 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
69668314 AAATAATTTT
* * *
69668324 ACTCTTTTTGAAAAGTTGATGGTAAAATTAG
1 ACTCTTTTTAAAAAATTGAGGGTAAAATTAG
*
69668355 ACTCTTTTTAAAAAATTGAGGGTCAAATT
1 ACTCTTTTTAAAAAATTGAGGGTAAAATT
69668384 TAACTAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (31 bp):
ACTCTTTTTAAAAAATTGAGGGTAAAATTAG
Found at i:69670834 original size:75 final size:75
Alignment explanation
Indices: 69670714--69670865 Score: 295
Period size: 75 Copynumber: 2.0 Consensus size: 75
69670704 GTAGCTTCGA
*
69670714 TCGTCGAAGCTGATCGGTGGTGGGTGGCCCTGCCGAACTGACGTTTCTGCTTCAGTTGCTTTGCT
1 TCGTCGAAGCTGATCGGTGGGGGGTGGCCCTGCCGAACTGACGTTTCTGCTTCAGTTGCTTTGCT
69670779 GGGTTGGGCT
66 GGGTTGGGCT
69670789 TCGTCGAAGCTGATCGGTGGGGGGTGGCCCTGCCGAACTGACGTTTCTGCTTCAGTTGCTTTGCT
1 TCGTCGAAGCTGATCGGTGGGGGGTGGCCCTGCCGAACTGACGTTTCTGCTTCAGTTGCTTTGCT
69670854 GGGTTGGGCT
66 GGGTTGGGCT
69670864 TC
1 TC
69670866 ATTCGATTAC
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.09, C:0.23, G:0.36, T:0.32
Consensus pattern (75 bp):
TCGTCGAAGCTGATCGGTGGGGGGTGGCCCTGCCGAACTGACGTTTCTGCTTCAGTTGCTTTGCT
GGGTTGGGCT
Found at i:69685402 original size:13 final size:11
Alignment explanation
Indices: 69685376--69685427 Score: 50
Period size: 13 Copynumber: 4.4 Consensus size: 11
69685366 GGCCTCTCCA
*
69685376 TTTTTTTCTTT
1 TTTTTTTATTT
69685387 TTTCTCTTTATTT
1 TTT-T-TTTATTT
*
69685400 TTTTTTTCTCTT
1 TTTTTTTAT-TT
69685412 TTTCTTTTATTT
1 TTT-TTTTATTT
69685424 TTTT
1 TTTT
69685428 CTTTTTTCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
11 8 0.24
12 12 0.35
13 14 0.41
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTATTT
Found at i:69685408 original size:24 final size:24
Alignment explanation
Indices: 69685376--69685427 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
69685366 GGCCTCTCCA
69685376 TTTTTTTCT-TTTTTCTCTTTATTT
1 TTTTTTTCTCTTTTTCT-TTTATTT
69685400 TTTTTTTCTCTTTTTCTTTTATTT
1 TTTTTTTCTCTTTTTCTTTTATTT
69685424 TTTT
1 TTTT
69685428 CTTTTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 20 0.74
25 7 0.26
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.85
Consensus pattern (24 bp):
TTTTTTTCTCTTTTTCTTTTATTT
Found at i:69685428 original size:13 final size:13
Alignment explanation
Indices: 69685384--69685432 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
69685374 CATTTTTTTC
69685384 TTTTTTCTCTTTA-
1 TTTTTTCT-TTTAT
*
69685397 TTTTTT-TTTTCT
1 TTTTTTCTTTTAT
*
69685409 CTTTTTCTTTTAT
1 TTTTTTCTTTTAT
69685422 TTTTTTCTTTT
1 TTTTTTCTTTT
69685433 TTCTTGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 3 0.10
12 6 0.20
13 21 0.70
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTCTTTTAT
Found at i:69685430 original size:19 final size:18
Alignment explanation
Indices: 69685378--69685433 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 18
69685368 CCTCTCCATT
*
69685378 TTTTTCTTTTTTCTCTTTA
1 TTTTT-TTTTTTCTTTTTA
*
69685397 TTTTTTTTTTCTCTTTTTC
1 TTTTTTTTTT-TCTTTTTA
69685416 TTTTATTTTTTTCTTTTT
1 TTTT-TTTTTTTCTTTTT
69685434 TCTTGAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.15
19 22 0.67
20 6 0.18
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTTTTTTTTCTTTTTA
Found at i:69693100 original size:19 final size:19
Alignment explanation
Indices: 69693076--69693125 Score: 84
Period size: 18 Copynumber: 2.7 Consensus size: 19
69693066 AATCATATCT
69693076 TCTAAGATTGTATATCATA
1 TCTAAGATTGTATATCATA
*
69693095 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGTATATCATA
69693113 TCTAAGATTGTAT
1 TCTAAGATTGTAT
69693126 TTCTGGACTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 17 0.61
19 11 0.39
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGTATATCATA
Found at i:69693781 original size:30 final size:28
Alignment explanation
Indices: 69693735--69693799 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 28
69693725 AATATATTTT
* *
69693735 TAAAAACAATGAATAATA-TAGAATTTAA
1 TAAAAAAAATGAATAATACTA-AAATTAA
*
69693763 TAAAAAAAATTGATATAATACTAAAATTAT
1 TAAAAAAAA-TGA-ATAATACTAAAATTAA
69693793 TAAAAAA
1 TAAAAAA
69693800 TAAAATATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 8 0.26
29 3 0.10
30 18 0.58
31 2 0.06
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (28 bp):
TAAAAAAAATGAATAATACTAAAATTAA
Found at i:69693957 original size:14 final size:15
Alignment explanation
Indices: 69693920--69693957 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
69693910 AAGAGGACAA
69693920 TCATATCTAAGATTG
1 TCATATCTAAGATTG
69693935 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
69693952 -CATATC
1 TCATATC
69693958 ACATCTAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:69693963 original size:19 final size:19
Alignment explanation
Indices: 69693919--69693978 Score: 97
Period size: 19 Copynumber: 3.3 Consensus size: 19
69693909 CAAGAGGACA
69693919 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
69693936 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
69693955 ATCACATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
69693974 ATCAT
1 ATCAT
69693979 TGAAGATTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
17 16 0.41
19 23 0.59
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:69694300 original size:123 final size:123
Alignment explanation
Indices: 69694081--69694327 Score: 485
Period size: 123 Copynumber: 2.0 Consensus size: 123
69694071 TAATTCTGGA
69694081 CTGAAATCTTCGTTTTTGGACTTATTTCTGGGCCCGGGAAAAATTGAGTGTCTACAGCTGCCCCT
1 CTGAAATCTTCGTTTTTGGACTTATTTCTGGGCCCGGGAAAAATTGAGTGTCTACAGCTGCCCCT
*
69694146 CTTTGCTCATTGCTGTGTAACAGGAATAGAGCAAAGACTATAAAAAGACTAATTTTGC
66 CTTTGCTCATTGCTGTGTAACAGGAATAGAGCAAAGACTATAAAAAGACCAATTTTGC
69694204 CTGAAATCTTCGTTTTTGGACTTATTTCTGGGCCCGGGAAAAATTGAGTGTCTACAGCTGCCCCT
1 CTGAAATCTTCGTTTTTGGACTTATTTCTGGGCCCGGGAAAAATTGAGTGTCTACAGCTGCCCCT
69694269 CTTTGCTCATTGCTGTGTAACAGGAATAGAGCAAAGACTATAAAAAGACCAATTTTGC
66 CTTTGCTCATTGCTGTGTAACAGGAATAGAGCAAAGACTATAAAAAGACCAATTTTGC
69694327 C
1 C
69694328 CGGTCTTGCC
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 123 1.00
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (123 bp):
CTGAAATCTTCGTTTTTGGACTTATTTCTGGGCCCGGGAAAAATTGAGTGTCTACAGCTGCCCCT
CTTTGCTCATTGCTGTGTAACAGGAATAGAGCAAAGACTATAAAAAGACCAATTTTGC
Found at i:69694931 original size:207 final size:207
Alignment explanation
Indices: 69694467--69695594 Score: 1837
Period size: 207 Copynumber: 5.5 Consensus size: 207
69694457 AAATCTGATT
* * *
69694467 CTTCAATTTGTT-TCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACA
1 CTTCGATTTGTTCT-CTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACA
* * * *
69694531 CGCGAAAGCCAAATCAGATATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCT
65 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
* * ** * * * *
69694596 TGGATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTTTGTCTTCCGTCGAATA
130 TGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATA
*
69694660 TGGAAACGCCAAA
195 TGGAGACGCCAAA
* *
69694673 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
69694738 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
69694803 GGATCTTGCTTCAGTATAAACATCTGAAGGCCATATCTACTGTGTGTCTGCCCCCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
69694868 GGAGATGCCAAA
196 GGAGACGCCAAA
*
69694880 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
69694945 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
69695010 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCTGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
69695075 GGAGACGCCAAA
196 GGAGACGCCAAA
* * *
69695087 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGACTTGCTTCAACGTAAACAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
69695152 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
69695217 GGATCTTGCTCCAATATAAACATCTGAAGGCCAGATCTGCTATGTGTCTCCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
69695282 GGAGACGCCAAA
196 GGAGACGCCAAA
*
69695294 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
69695359 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
69695424 GGATATTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCTAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
69695489 GGGGACGCCAAA
196 GGAGACGCCAAA
* * * * * * *
69695501 CATCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATTTTAGATTTTCTTCATCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
69695566 GTGAAAGCCAAATCAGCTATGTCTTCGAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGAT
69695595 CTGCTCTCCG
Statistics
Matches: 862, Mismatches: 58, Indels: 3
0.93 0.06 0.00
Matches are distributed among these distances:
206 124 0.14
207 738 0.86
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:69695911 original size:43 final size:43
Alignment explanation
Indices: 69695723--69695916 Score: 143
Period size: 43 Copynumber: 4.5 Consensus size: 43
69695713 CTATACTTCA
* * * *
69695723 ACCTGTTACCCTACTGCTTAGGGGGTTAAG-GC-GC-ATCTTCG
1 ACCTGTTACCCTACTGCTTAGGGAGATAAGATCAGCAAT-TTTG
* * * *
69695764 ATCTGCT-CCACTACTGCTTAGGGAGACAAGATCCGCAATTTTG
1 ACCTGTTACC-CTACTGCTTAGGGAGATAAGATCAGCAATTTTG
* * *
69695807 ACCTGTTACCCTACTGCTTAGGG-GATTAAG-GCGAGCCATCGTTG
1 ACCTGTTACCCTACTGCTTAGGGAGA-TAAGATC-AGCAAT-TTTG
* * *
69695851 ATCTGTT-CCGCTACTGCTTAGGGAGATAAGATCTGTAATTTT-
1 ACCTGTTACC-CTACTGCTTAGGGAGATAAGATCAGCAATTTTG
69695893 AGCCTGTTACCCTACTGCTTAGGG
1 A-CCTGTTACCCTACTGCTTAGGG
69695917 GGTTAAGGCG
Statistics
Matches: 119, Mismatches: 21, Indels: 24
0.73 0.13 0.15
Matches are distributed among these distances:
40 2 0.02
41 22 0.18
42 5 0.04
43 52 0.44
44 35 0.29
45 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.30
Consensus pattern (43 bp):
ACCTGTTACCCTACTGCTTAGGGAGATAAGATCAGCAATTTTG
Found at i:69696090 original size:84 final size:85
Alignment explanation
Indices: 69695722--69696092 Score: 490
Period size: 87 Copynumber: 4.4 Consensus size: 85
69695712 GCTATACTTC
*
69695722 AACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA-TC-TTCGATCTGCTCCACTACTGCTTAG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCGTTCGATCTGCTCCACTACTGCTTAG
* *
69695785 GGAGACAAGATCCGCAATTTT
65 GGAGATAAGATCTGCAATTTT
* * *
69695806 GACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGCCATCGTT-GATCTGTTCCGCTACTGCTT
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAG---TCGTTCGATCTGCTCCACTACTGCTT
*
69695870 AGGGAGATAAGATCTGTAATTTT
63 AGGGAGATAAGATCTGCAATTTT
* * * *
69695893 AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCGTCGTCAATCTGCTCCGCTACTGCTTA
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGT--TCGATCTGCTCCACTACTGCTTA
*
69695958 GGGAGATAAGATCTG-----TG
64 GGGAGATAAGATCTGCAATTTT
*
69695975 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-TTCGATGTGCTCCACTACTGCTTAGG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTTCGATCTGCTCCACTACTGCTTAGG
*
69696039 GAGATAAGATCTGCAAATTT
66 GAGATAAGATCTGCAATTTT
*
69696059 AACCTGTTACCCTACTGCTTAGAGGATTAAGGCG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
69696093 CTGAATTTTG
Statistics
Matches: 254, Mismatches: 20, Indels: 26
0.85 0.07 0.09
Matches are distributed among these distances:
79 35 0.14
81 1 0.00
82 37 0.15
83 1 0.00
84 70 0.28
86 1 0.00
87 107 0.42
88 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (85 bp):
AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGCAATTTT
Done.