Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 21 of 284
Found at i:7099881 original size:64 final size:64
Alignment explanation
Indices: 7099803--7100060 Score: 498
Period size: 64 Copynumber: 4.0 Consensus size: 64
7099793 ATTCTCAATT
* *
7099803 TACATCGAATAATCACCCAAAAACGCATTAAGAATGTGACTAAAAAAATATTATTTTTAACACC
1 TACATCGAATAATCACCCAGAAACGCATTAAAAATGTGACTAAAAAAATATTATTTTTAACACC
7099867 TACATCGAATAATCACCCAGAAACGCATTAAAAATGTGACTAAAAAAATATTATTTTTAACACC
1 TACATCGAATAATCACCCAGAAACGCATTAAAAATGTGACTAAAAAAATATTATTTTTAACACC
7099931 TACATCGAATAATCACCCAGAAACGCATTAAAAATGTGACTAAAAAAATATTATTTTTAACACC
1 TACATCGAATAATCACCCAGAAACGCATTAAAAATGTGACTAAAAAAATATTATTTTTAACACC
7099995 TACATCGAATAATCACCCAGAAACGCATTAAAAATGTGACTAAAAAAATATTATTTTTAACACC
1 TACATCGAATAATCACCCAGAAACGCATTAAAAATGTGACTAAAAAAATATTATTTTTAACACC
7100059 TA
1 TA
7100061 TCAAATATCG
Statistics
Matches: 192, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 192 1.00
ACGTcount: A:0.47, C:0.19, G:0.08, T:0.27
Consensus pattern (64 bp):
TACATCGAATAATCACCCAGAAACGCATTAAAAATGTGACTAAAAAAATATTATTTTTAACACC
Found at i:7102974 original size:54 final size:52
Alignment explanation
Indices: 7102893--7103017 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 52
7102883 CGTGTGTATC
* * *
7102893 AAGTTAGTGTGTTACACGGCCTAGCACACA-GCCTGCGACAC-ACC-TGTGCGTCA
1 AAGTCAGTGAGTTACACGGTCTAGCACA-AGGCCTGCGACACGACCGTGT-C--CA
*
7102946 TAAGTCAGTGAGTTACACGGTCTGGCACAAGGCCTGCGACACGACCGTGTCCA
1 -AAGTCAGTGAGTTACACGGTCTAGCACAAGGCCTGCGACACGACCGTGTCCA
7102999 AA-TCAGTGAGTTACACGGT
1 AAGTCAGTGAGTTACACGGT
7103018 TTGAGACATA
Statistics
Matches: 64, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
51 17 0.27
52 2 0.03
53 3 0.05
54 35 0.55
55 4 0.06
56 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (52 bp):
AAGTCAGTGAGTTACACGGTCTAGCACAAGGCCTGCGACACGACCGTGTCCA
Found at i:7112912 original size:25 final size:24
Alignment explanation
Indices: 7112874--7112925 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
7112864 ATGTTCAAGT
*
7112874 GAGCCATATCAGGAAGCTCAAAAA
1 GAGCCATAACAGGAAGCTCAAAAA
* *
7112898 GAGCCTATAACAGGACGCTCATAAA
1 GAGCC-ATAACAGGAAGCTCAAAAA
7112923 GAG
1 GAG
7112926 TTGCGCTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.13
Consensus pattern (24 bp):
GAGCCATAACAGGAAGCTCAAAAA
Found at i:7114898 original size:17 final size:16
Alignment explanation
Indices: 7114876--7114918 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
7114866 CATATGCTAG
7114876 GCCATGTGAGCCACATA
1 GCCATGTGA-CCACATA
*
7114893 GCCATGTGCACCACATG
1 GCCATGTG-ACCACATA
*
7114910 GCCGTGTGA
1 GCCATGTGA
7114919 AATCACCCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (16 bp):
GCCATGTGACCACATA
Found at i:7120110 original size:40 final size:40
Alignment explanation
Indices: 7120021--7120204 Score: 177
Period size: 40 Copynumber: 4.7 Consensus size: 40
7120011 TTGAATGATG
*
7120021 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
7120059 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
7120100 TCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
7120139 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
7120178 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
7120205 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 14, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
39 53 0.43
40 57 0.47
41 11 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:7120226 original size:79 final size:79
Alignment explanation
Indices: 7120073--7120237 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
7120063 GGACTAAGAT
* ** *
7120073 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCAAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTGACTAA
*
7120138 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
7120152 CCGAAGGCATTTGTGTGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCAAAGGCATTTGAACGAGTGA-
* *
7120214 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
7120231 CCGAAGG
1 CCGAAGG
7120238 TACGTGATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:7122797 original size:15 final size:15
Alignment explanation
Indices: 7122773--7122804 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7122763 TATGTATGCA
*
7122773 AAATATAAAAGACAT
1 AAATACAAAAGACAT
7122788 AAATACAAAAGACAT
1 AAATACAAAAGACAT
7122803 AA
1 AA
7122805 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:7126339 original size:2 final size:2
Alignment explanation
Indices: 7126332--7126365 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
7126322 CTAACCTCCC
7126332 TA TA TA TA TA TA TA -A TA TA TA T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7126366 GAAGTATGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7126752 original size:33 final size:34
Alignment explanation
Indices: 7126704--7126769 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
7126694 TTATGTTATT
*
7126704 CTTGAAAGTTTTGTTAAGTG-ACTACTTATATTTG
1 CTTGAAAGATTTGTTAA-TGAACTACTTATATTTG
7126738 CTTGAAA-ATTTGTTAATGAACTACTTATATTT
1 CTTGAAAGATTTGTTAATGAACTACTTATATTT
7126770 ATATTAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 2 0.07
33 21 0.70
34 7 0.23
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.47
Consensus pattern (34 bp):
CTTGAAAGATTTGTTAATGAACTACTTATATTTG
Found at i:7129623 original size:22 final size:23
Alignment explanation
Indices: 7129576--7129620 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
7129566 TTTCAGAAAT
7129576 AAGAATCCTTGAAAAAGAAAAGG
1 AAGAATCCTTGAAAAAGAAAAGG
7129599 AAGAATCCTTGAAAAAGAAAAG
1 AAGAATCCTTGAAAAAGAAAAG
7129621 AAGCAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.58, C:0.09, G:0.20, T:0.13
Consensus pattern (23 bp):
AAGAATCCTTGAAAAAGAAAAGG
Found at i:7130805 original size:28 final size:27
Alignment explanation
Indices: 7130773--7130826 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 27
7130763 TATTAGTGCA
7130773 TTGATATATC-TTGCTAGTCATACATGAC
1 TTGATATATCATTGCT-GTCA-ACATGAC
7130801 TTGATATATCATTTGCTGTCAACATG
1 TTGATATATCA-TTGCTGTCAACATG
7130827 TTACCAAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 15 0.62
29 4 0.17
30 5 0.21
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (27 bp):
TTGATATATCATTGCTGTCAACATGAC
Found at i:7132255 original size:21 final size:21
Alignment explanation
Indices: 7132218--7132259 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7132208 TTACTTTTTC
7132218 AAATTATTAATGATTTTTTAAG
1 AAATTATTAAT-ATTTTTTAAG
7132240 AAATTCATTAAT-TTTTTTAA
1 AAATT-ATTAATATTTTTTAA
7132260 ATTTAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 5 0.26
23 6 0.32
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.52
Consensus pattern (21 bp):
AAATTATTAATATTTTTTAAG
Found at i:7132293 original size:14 final size:14
Alignment explanation
Indices: 7132257--7132294 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
7132247 TTAATTTTTT
7132257 TAAATTTAATATTA
1 TAAATTTAATATTA
*
7132271 TAAA--AAATATTA
1 TAAATTTAATATTA
7132283 TAAATTTAATAT
1 TAAATTTAATAT
7132295 AGACTACTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
12 11 0.55
14 9 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TAAATTTAATATTA
Found at i:7134706 original size:47 final size:46
Alignment explanation
Indices: 7134445--7134706 Score: 223
Period size: 47 Copynumber: 5.7 Consensus size: 46
7134435 ATTGTGTGCT
* *
7134445 AGTGTAAGA-CATGTCTGGGACATGCATCGA-TCACATTATAAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACTTACATGAT--GAGCC
* * * *
7134491 AGTGTAAGACCATGTCTGGGACATGTATCGGCCTTGAGATG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GACTT-ACATGATGAGCC
* * ** * * *
7134538 AGTGTAAG-CTATCTCTTTGACATGCATCGAC-TACAAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACTTACATGATGAGCC
* * **
7134582 AATGTAAGACCATGTCTGGGACATGGCATCAACTTA-ATGGATGAGTT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACTTACAT-GATGAGCC
* *
7134629 AGTGTAAGACCATGTCTAGGATATGGCATCGACTTA-ATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACTTACAT-GATGAGCC
7134676 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACAT-GCATCG
7134707 GCATTATACC
Statistics
Matches: 173, Mismatches: 34, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
43 3 0.02
44 11 0.06
45 13 0.08
46 32 0.18
47 108 0.62
48 1 0.01
49 2 0.01
50 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACTTACATGATGAGCC
Found at i:7142220 original size:47 final size:47
Alignment explanation
Indices: 7142162--7142286 Score: 178
Period size: 47 Copynumber: 2.7 Consensus size: 47
7142152 AAGATGTGTT
* *
7142162 AGTGTAAGACCATGTCTAGAACATGACATCGACTTAATGGATGAGTC
1 AGTGTAAGACCATGTCTGGAACATGACATCGACTTAATGGATGAGCC
** * *
7142209 AGTGTAAGACCATGTCTGGTGCATGGCATCGACTTAATGGTTGAGCC
1 AGTGTAAGACCATGTCTGGAACATGACATCGACTTAATGGATGAGCC
* *
7142256 AGTGTAAGACCATGTCTGGGACATGTCATCG
1 AGTGTAAGACCATGTCTGGAACATGACATCG
7142287 GCATTATACC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGAACATGACATCGACTTAATGGATGAGCC
Found at i:7150429 original size:17 final size:17
Alignment explanation
Indices: 7150407--7150444 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
7150397 GCACAAATAT
7150407 TTTATATAAGATATTGA
1 TTTATATAAGATATTGA
7150424 TTTATATAAGATATTGA
1 TTTATATAAGATATTGA
7150441 TTTA
1 TTTA
7150445 CTCGAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (17 bp):
TTTATATAAGATATTGA
Found at i:7153758 original size:50 final size:49
Alignment explanation
Indices: 7153637--7153823 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
7153627 TGAGGTCGCA
* ** * *
7153637 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGAAAACTG-TGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGCTGGTCACG
** *
7153688 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGCT--GGTCACG
* *
7153738 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGCTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGCTGGTCACG
* *
7153787 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
7153824 TAGCTTCGGC
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
47 2 0.02
48 3 0.03
49 40 0.34
50 41 0.35
51 32 0.27
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGCTGGTCACG
Found at i:7160669 original size:6 final size:7
Alignment explanation
Indices: 7160638--7160674 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
7160628 TTGAGGATAT
7160638 CTAAACC
1 CTAAACC
7160645 CTAAACC
1 CTAAACC
7160652 CTAAACC
1 CTAAACC
7160659 CTAAA-C
1 CTAAACC
7160665 CTAAACC
1 CTAAACC
7160672 CTA
1 CTA
7160675 TCGACAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.21
7 23 0.79
ACGTcount: A:0.43, C:0.41, G:0.00, T:0.16
Consensus pattern (7 bp):
CTAAACC
Found at i:7166872 original size:26 final size:26
Alignment explanation
Indices: 7166822--7166873 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
7166812 TAATTTACCC
* *
7166822 ATTTTTTAAATAGAAAAGTCGAAATG
1 ATTTTTTAAATAGAAAAGCCAAAATG
7166848 ATTTTTTAAATAGAAAAGCCAAAATG
1 ATTTTTTAAATAGAAAAGCCAAAATG
7166874 CAATTTAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.48, C:0.06, G:0.13, T:0.33
Consensus pattern (26 bp):
ATTTTTTAAATAGAAAAGCCAAAATG
Found at i:7168220 original size:5 final size:5
Alignment explanation
Indices: 7168210--7168236 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7168200 ATTATTATTT
7168210 ATTAA ATTAA ATTAA ATTAA ATTAA AT
1 ATTAA ATTAA ATTAA ATTAA ATTAA AT
7168237 AATTTTCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTAA
Found at i:7185584 original size:8 final size:8
Alignment explanation
Indices: 7185555--7185606 Score: 70
Period size: 8 Copynumber: 6.6 Consensus size: 8
7185545 ATGTATCGGT
7185555 AAAAGCCG
1 AAAAGCCG
* *
7185563 AAATGCCA
1 AAAAGCCG
7185571 AAAAGCCG
1 AAAAGCCG
7185579 AAAAGCCG
1 AAAAGCCG
*
7185587 AAATGCCG
1 AAAAGCCG
7185595 AAAAGCC-
1 AAAAGCCG
7185602 AAAAG
1 AAAAG
7185607 TTTGGCTACG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
7 5 0.13
8 33 0.87
ACGTcount: A:0.52, C:0.23, G:0.21, T:0.04
Consensus pattern (8 bp):
AAAAGCCG
Found at i:7185587 original size:24 final size:23
Alignment explanation
Indices: 7185555--7185606 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 23
7185545 ATGTATCGGT
7185555 AAAAGCCGAAATGCCAAAAAGCC
1 AAAAGCCGAAATGCCAAAAAGCC
*
7185578 GAAAAGCCGAAATGCCGAAAAGCC
1 -AAAAGCCGAAATGCCAAAAAGCC
7185602 AAAAG
1 AAAAG
7185607 TTTGGCTACG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.52, C:0.23, G:0.21, T:0.04
Consensus pattern (23 bp):
AAAAGCCGAAATGCCAAAAAGCC
Found at i:7185886 original size:29 final size:28
Alignment explanation
Indices: 7185816--7185902 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 28
7185806 GTGAGAATGA
*
7185816 ATATAAATATGATTTGGGCCTAATAGGCC
1 ATAT-AATATGATTTGGGCCTAATGGGCC
**
7185845 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATA-ATATGATTTGGGCCTAATGGGCC
* *
7185874 ATATGAATATGA-TTGGGCTTAGTGGGCC
1 ATAT-AATATGATTTGGGCCTAATGGGCC
7185902 A
1 A
7185903 GATACAGGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 16 0.33
29 32 0.65
30 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
ATATAATATGATTTGGGCCTAATGGGCC
Found at i:7194166 original size:8 final size:8
Alignment explanation
Indices: 7194135--7194201 Score: 64
Period size: 8 Copynumber: 8.4 Consensus size: 8
7194125 ATGTATCGGC
7194135 AAAAGCCG
1 AAAAGCCG
*
7194143 AAATGCC-
1 AAAAGCCG
*
7194150 AAAATGTCG
1 AAAA-GCCG
*
7194159 AAAAGTCG
1 AAAAGCCG
*
7194167 AAAAGCCA
1 AAAAGCCG
*
7194175 AAAAGTCG
1 AAAAGCCG
*
7194183 AAATGCCG
1 AAAAGCCG
7194191 AAAAGCCG
1 AAAAGCCG
7194199 AAA
1 AAA
7194202 GTTTGGCTAC
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
7 3 0.06
8 40 0.85
9 4 0.09
ACGTcount: A:0.51, C:0.19, G:0.21, T:0.09
Consensus pattern (8 bp):
AAAAGCCG
Found at i:7194168 original size:24 final size:24
Alignment explanation
Indices: 7194135--7194197 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
7194125 ATGTATCGGC
* *
7194135 AAAAGCCGAAATGCCAAAATGTCG
1 AAAAGCCGAAAAGCCAAAAAGTCG
*
7194159 AAAAGTCGAAAAGCCAAAAAGTCG
1 AAAAGCCGAAAAGCCAAAAAGTCG
*
7194183 AAATGCCGAAAAGCC
1 AAAAGCCGAAAAGCC
7194198 GAAAGTTTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.49, C:0.21, G:0.21, T:0.10
Consensus pattern (24 bp):
AAAAGCCGAAAAGCCAAAAAGTCG
Found at i:7194482 original size:29 final size:28
Alignment explanation
Indices: 7194412--7194483 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
7194402 GTGAGCATGA
7194412 ATATAAATGTGATTTGGGCCTAATGAGCC
1 ATAT-AATGTGATTTGGGCCTAATGAGCC
* *
7194441 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATA-ATGTGATTTGGGCCTAATGAGCC
*
7194470 ATATGAATATGATT
1 ATAT-AATGTGATT
7194484 AGGCTTAGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 35 0.95
30 1 0.03
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (28 bp):
ATATAATGTGATTTGGGCCTAATGAGCC
Found at i:7196279 original size:86 final size:86
Alignment explanation
Indices: 7196178--7196346 Score: 293
Period size: 86 Copynumber: 2.0 Consensus size: 86
7196168 CTACCTACCT
*
7196178 AAAACACTAAAGAAAACCAAAAAAACACAAAACCCAAAAGAACTTTAGAGAAGAAGACAAGAGAA
1 AAAACACTAAAGAAAACCAAAAAAACACAAAACCCAAAAGAACTTTAGAGAAAAAGACAAGAGAA
7196243 CTAAGCTAAAAGATGATAGAC
66 CTAAGCTAAAAGATGATAGAC
** * *
7196264 AAAACACTAAAGAAAACCAGGAAAACACAAAACCCGAAAGAACTTTAGAGAAAAAGACAAGAGAG
1 AAAACACTAAAGAAAACCAAAAAAACACAAAACCCAAAAGAACTTTAGAGAAAAAGACAAGAGAA
7196329 CTAAGCTAAAAGATGATA
66 CTAAGCTAAAAGATGATA
7196347 AATAAAAGGA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 78 1.00
ACGTcount: A:0.59, C:0.16, G:0.15, T:0.09
Consensus pattern (86 bp):
AAAACACTAAAGAAAACCAAAAAAACACAAAACCCAAAAGAACTTTAGAGAAAAAGACAAGAGAA
CTAAGCTAAAAGATGATAGAC
Found at i:7199480 original size:120 final size:119
Alignment explanation
Indices: 7199264--7199506 Score: 298
Period size: 120 Copynumber: 2.0 Consensus size: 119
7199254 CTAAGATCCA
*
7199264 AAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCTGAAGGCATTTGTACGAGTTACTAAAT
1 AAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAAAT
** *
7199329 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCG
66 CCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAATCCCG
* * *
7199384 AAGGCATTTGTGCGAGTTACTAAATCCAGG-TTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAT
1 AAGGCATTTGTACGAGTTACTAAATCC-GGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTA-
* * * *
7199447 AA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCG
63 AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATCCCG
7199503 AAGG
1 AAGG
7199507 TACGTGATTT
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
119 18 0.17
120 85 0.79
121 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (119 bp):
AAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAAAT
CCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATCCCG
Found at i:7199487 original size:40 final size:40
Alignment explanation
Indices: 7199208--7199473 Score: 317
Period size: 40 Copynumber: 6.7 Consensus size: 40
7199198 TTGAATGATG
* * * *
7199208 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* * *
7199248 TCCGGACTAAGAT-CCAAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
7199288 TCCGGACTAAGAT-CTGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
7199328 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
7199368 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
7199408 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
7199449 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
7199474 AACGAGTAGC
Statistics
Matches: 205, Mismatches: 17, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
39 1 0.00
40 194 0.95
41 10 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:7201248 original size:26 final size:26
Alignment explanation
Indices: 7201128--7201344 Score: 269
Period size: 26 Copynumber: 8.3 Consensus size: 26
7201118 TTTACCATAG
*
7201128 AGGCTTTCTTTTCATGGTT-CGCCACAA
1 AGGCTTTC-TTTCAT-ATTACGCCACAA
*
7201155 AGGCTTTCAATTT-ATTTTACGCCACAA
1 AGGCTTTC--TTTCATATTACGCCACAA
* *
7201182 AGGCTATTCTTTCATATTTCACCACAA
1 AGGCT-TTCTTTCATATTACGCCACAA
7201209 AGG-TTTCTTTCATATTACGCCACAA
1 AGGCTTTCTTTCATATTACGCCACAA
* *
7201234 AGGCTTTCTTTCATACTACACCACAA
1 AGGCTTTCTTTCATATTACGCCACAA
* **
7201260 AGGCTTTATTTCATGCTACGCCACAA
1 AGGCTTTCTTTCATATTACGCCACAA
*
7201286 AGGCTTTCTTTCATACTACGCCACAA
1 AGGCTTTCTTTCATATTACGCCACAA
*
7201312 AGGCTTTCTTTCATATTACACCACAA
1 AGGCTTTCTTTCATATTACGCCACAA
7201338 AGGCTTT
1 AGGCTTT
7201345 TCCTTATCTG
Statistics
Matches: 169, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
25 22 0.13
26 104 0.62
27 37 0.22
28 6 0.04
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (26 bp):
AGGCTTTCTTTCATATTACGCCACAA
Found at i:7204061 original size:22 final size:22
Alignment explanation
Indices: 7204033--7204076 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7204023 TGAGGCACTG
7204033 GGTGCCAAATTGCTTCAGTTAT
1 GGTGCCAAATTGCTTCAGTTAT
7204055 GGTGCCAAATTGCTTCAGTTAT
1 GGTGCCAAATTGCTTCAGTTAT
7204077 ACTAATGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (22 bp):
GGTGCCAAATTGCTTCAGTTAT
Found at i:7206928 original size:28 final size:28
Alignment explanation
Indices: 7206888--7206944 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
7206878 ATGTTTGTAT
7206888 GCCTACTTTAAATGAATATGATTGGTAA
1 GCCTACTTTAAATGAATATGATTGGTAA
7206916 GCCTACTTTAAATGAATATGATTGGTAA
1 GCCTACTTTAAATGAATATGATTGGTAA
7206944 G
1 G
7206945 TTAATTTCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (28 bp):
GCCTACTTTAAATGAATATGATTGGTAA
Found at i:7210037 original size:54 final size:54
Alignment explanation
Indices: 7209955--7210065 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 54
7209945 CCATTTTATC
7209955 TACATTGCTAGGCTTACGAATAGTTTGCCTAGCCTAATCACATTATTCTTGTCA
1 TACATTGCTAGGCTTACGAATAGTTTGCCTAGCCTAATCACATTATTCTTGTCA
*
7210009 TACATTGTTAGGCTTACGAATAGTTTGCCTAGCCTAATCACATTATTCTTGTCA
1 TACATTGCTAGGCTTACGAATAGTTTGCCTAGCCTAATCACATTATTCTTGTCA
7210063 TAC
1 TAC
7210066 TTGAACACGC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (54 bp):
TACATTGCTAGGCTTACGAATAGTTTGCCTAGCCTAATCACATTATTCTTGTCA
Found at i:7210880 original size:57 final size:56
Alignment explanation
Indices: 7210786--7210908 Score: 156
Period size: 57 Copynumber: 2.2 Consensus size: 56
7210776 TTATAGTCTC
* * ** * *
7210786 ACCACAAAGGCATCCTTTAAGAGGTTTGCCACGAAGGCTTACCCTCCTAGAGTTTT
1 ACCACAAAGGCATCCTTTAACAAGTTCACCACAAAGGCTTACCCTCCTAGAGTTCT
* * *
7210842 GCCACAAAGGCTATCCTTTAACAAGTTCACCACAAAGGCTTGCCTTCCTAGAGTTCT
1 ACCACAAAGGC-ATCCTTTAACAAGTTCACCACAAAGGCTTACCCTCCTAGAGTTCT
7210899 ACCACAAAGG
1 ACCACAAAGG
7210909 TTGTCATTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
56 10 0.18
57 46 0.82
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (56 bp):
ACCACAAAGGCATCCTTTAACAAGTTCACCACAAAGGCTTACCCTCCTAGAGTTCT
Found at i:7217580 original size:28 final size:28
Alignment explanation
Indices: 7217539--7217630 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 28
7217529 GTTCGCCATG
* *
7217539 AAGGCTTACCCTTTCAGAGTTTTGCCACA
1 AAGGCTT-GCCTTTCAGAGTTTTACCACA
* * * *
7217568 AATG-TTGTCCTTTAAGAGGTTCACCACA
1 AAGGCTTG-CCTTTCAGAGTTTTACCACA
* *
7217596 AAGGCTTGCCTTTCTAAAGTTTTTCCACA
1 AAGGCTTGCCTTTC-AGAGTTTTACCACA
7217625 AAGGCT
1 AAGGCT
7217631 ATCCTTTAGG
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
28 26 0.54
29 22 0.46
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (28 bp):
AAGGCTTGCCTTTCAGAGTTTTACCACA
Found at i:7217636 original size:57 final size:57
Alignment explanation
Indices: 7217509--7217638 Score: 138
Period size: 57 Copynumber: 2.3 Consensus size: 57
7217499 GAGTCTCGGA
* * * ** *
7217509 ACAAAGGC-ATCTTTTAAGATGTTCGCCATGAAGGCTTACCCTTTCAGAGTTTTGCC
1 ACAAAGGCTATCCTTTAAGAGGTTCACCACAAAGGCTTACCCTTTCAAAGTTTTGCC
* * * * *
7217565 ACAAATGTTGTCCTTTAAGAGGTTCACCACAAAGGCTT-GCCTTTCTAAAGTTTTTCC
1 ACAAAGGCTATCCTTTAAGAGGTTCACCACAAAGGCTTACCCTTTC-AAAGTTTTGCC
7217622 ACAAAGGCTATCCTTTA
1 ACAAAGGCTATCCTTTA
7217639 GGTGTTTTAA
Statistics
Matches: 58, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
56 12 0.21
57 46 0.79
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (57 bp):
ACAAAGGCTATCCTTTAAGAGGTTCACCACAAAGGCTTACCCTTTCAAAGTTTTGCC
Found at i:7223418 original size:19 final size:19
Alignment explanation
Indices: 7223396--7223434 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7223386 TTTTAAATAG
*
7223396 ATACACATGTATTAATAAT
1 ATACACATGTATAAATAAT
7223415 ATACACATGTATAAATAAT
1 ATACACATGTATAAATAAT
7223434 A
1 A
7223435 AATAAGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (19 bp):
ATACACATGTATAAATAAT
Found at i:7224326 original size:15 final size:15
Alignment explanation
Indices: 7224278--7224327 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
7224268 TTTATCAAAT
7224278 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* * *
7224293 TCATTTTGATTGAAT
1 TTATATTGATTGAAA
7224308 TTATATTGATTGAAA
1 TTATATTGATTGAAA
7224323 TTATA
1 TTATA
7224328 ATATATATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.36, C:0.02, G:0.12, T:0.50
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:7228478 original size:26 final size:26
Alignment explanation
Indices: 7228409--7228631 Score: 232
Period size: 26 Copynumber: 8.5 Consensus size: 26
7228399 TCATGGTTTT
* * * *
7228409 CCACAAAGCCTTTCAATTCATTTTACA
1 CCACAAAGGCTTTC-TTTCATATTACG
* * **
7228436 CCATAAAGGATATTCTTTCATATTGTG
1 CCACAAAGGCT-TTCTTTCATATTACG
* *
7228463 CCACAAATGCTTTCTTTTATATTACG
1 CCACAAAGGCTTTCTTTCATATTACG
* *
7228489 CCACAAAGGCTTTCTTTCATACTATG
1 CCACAAAGGCTTTCTTTCATATTACG
*
7228515 CCACAAAGGCTTTCTTCCATATTACG
1 CCACAAAGGCTTTCTTTCATATTACG
* * * *
7228541 CCACAAATGTTTTCTTTCATACTATG
1 CCACAAAGGCTTTCTTTCATATTACG
*
7228567 CCACAAAGGCCTTCTTTCATATTACG
1 CCACAAAGGCTTTCTTTCATATTACG
*
7228593 CCACAAAGGC-TTCATTTCATATTACA
1 CCACAAAGGCTTTC-TTTCATATTACG
*
7228619 CTACAAAGGCTTT
1 CCACAAAGGCTTT
7228632 TCATTATTGG
Statistics
Matches: 160, Mismatches: 33, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
25 3 0.02
26 129 0.81
27 25 0.16
28 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (26 bp):
CCACAAAGGCTTTCTTTCATATTACG
Found at i:7228517 original size:52 final size:52
Alignment explanation
Indices: 7228382--7228631 Score: 250
Period size: 52 Copynumber: 4.8 Consensus size: 52
7228372 TTGTGATTTA
* ** * * * * * *
7228382 CCACAAAGGCTTTATTTTCATGGTTTTCCACAAAGCCTTTCAATTCATTTTACA
1 CCACAAAGGCTTT-CTTTCATACTATGCCACAAAGGCTTTC-TTTCATATTACG
* * * * * *
7228436 CCATAAAGGATATTCTTTCATATTGTGCCACAAATGCTTTCTTTTATATTACG
1 CCACAAAGGCT-TTCTTTCATACTATGCCACAAAGGCTTTCTTTCATATTACG
*
7228489 CCACAAAGGCTTTCTTTCATACTATGCCACAAAGGCTTTCTTCCATATTACG
1 CCACAAAGGCTTTCTTTCATACTATGCCACAAAGGCTTTCTTTCATATTACG
* * *
7228541 CCACAAATGTTTTCTTTCATACTATGCCACAAAGGCCTTCTTTCATATTACG
1 CCACAAAGGCTTTCTTTCATACTATGCCACAAAGGCTTTCTTTCATATTACG
* ** *
7228593 CCACAAAGGC-TTCATTTCATATTACACTACAAAGGCTTT
1 CCACAAAGGCTTTC-TTTCATACTATGCCACAAAGGCTTT
7228632 TCATTATTGG
Statistics
Matches: 163, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
51 3 0.02
52 112 0.69
53 17 0.10
54 29 0.18
55 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.36
Consensus pattern (52 bp):
CCACAAAGGCTTTCTTTCATACTATGCCACAAAGGCTTTCTTTCATATTACG
Found at i:7231439 original size:26 final size:26
Alignment explanation
Indices: 7231403--7231486 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
7231393 CATGAAATTC
7231403 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7231429 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7231455 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7231481 TTATCA
1 TTATCA
7231487 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7232176 original size:26 final size:26
Alignment explanation
Indices: 7232080--7232313 Score: 256
Period size: 26 Copynumber: 9.0 Consensus size: 26
7232070 GGCTTTTCAG
* * *
7232080 TTCATTTTACGCCAAAAAGGTTATTCT
1 TTCATATTACGCCACAAAGGCT-TTCT
* * *
7232107 TTCATATTGCGCCGCAAAGGCTATGCT
1 TTCATATTACGCCACAAAGGCT-TTCT
* * *
7232134 TTCATATTATGCAACAAAGTCTTTCT
1 TTCATATTACGCCACAAAGGCTTTCT
* *
7232160 TTCATACTACGCCACAATGGCTTTC-
1 TTCATATTACGCCACAAAGGCTTTCT
* *
7232185 TTCTATATTAAGCCAAAAAGGCTTTCT
1 TTC-ATATTACGCCACAAAGGCTTTCT
*
7232212 TTCATACTACGCCACAAAGGCTTTCT
1 TTCATATTACGCCACAAAGGCTTTCT
* *
7232238 TTCA-ACTATGCCACAAAGGCTTTCT
1 TTCATATTACGCCACAAAGGCTTTCT
* * *
7232263 TTCATATTACACCACAATGGCTTCCT
1 TTCATATTACGCCACAAAGGCTTTCT
7232289 TTCATATTACGCCACAAAGGCTTTC
1 TTCATATTACGCCACAAAGGCTTTC
7232314 ATTATCTATC
Statistics
Matches: 171, Mismatches: 33, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
25 27 0.16
26 103 0.60
27 41 0.24
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.35
Consensus pattern (26 bp):
TTCATATTACGCCACAAAGGCTTTCT
Found at i:7232285 original size:77 final size:78
Alignment explanation
Indices: 7232087--7232313 Score: 262
Period size: 77 Copynumber: 2.9 Consensus size: 78
7232077 CAGTTCATTT
* * * * * * * *
7232087 TACGCCAAAAAGGTTATTCTTTCATATTGCGCCGCAAAGGCTATGCTTTCATATTATGCAACAAA
1 TACGCCACAAAGGCT-TTCTTTCATATTACACCACAAAGGCT-TCCTTTCATATTACGCCACAAA
*
7232152 GTCTTTCTTTCATAC
64 GGCTTTCTTTCATAC
* * * *
7232167 TACGCCACAATGGCTTTC-TTCTATATTA-AGCCAAAAAGGCTTTCTTTCATACTACGCCACAAA
1 TACGCCACAAAGGCTTTCTTTC-ATATTACA-CCACAAAGGCTTCCTTTCATATTACGCCACAAA
7232230 GGCTTTCTTTCA-AC
64 GGCTTTCTTTCATAC
* *
7232244 TATGCCACAAAGGCTTTCTTTCATATTACACCACAATGGCTTCCTTTCATATTACGCCACAAAGG
1 TACGCCACAAAGGCTTTCTTTCATATTACACCACAAAGGCTTCCTTTCATATTACGCCACAAAGG
7232309 CTTTC
66 CTTTC
7232314 ATTATCTATC
Statistics
Matches: 125, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
77 60 0.48
78 36 0.29
79 17 0.14
80 12 0.10
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.33
Consensus pattern (78 bp):
TACGCCACAAAGGCTTTCTTTCATATTACACCACAAAGGCTTCCTTTCATATTACGCCACAAAGG
CTTTCTTTCATAC
Found at i:7238646 original size:42 final size:42
Alignment explanation
Indices: 7238587--7238670 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
7238577 TTCAGGCTTC
*
7238587 GGTTCGGCAATTTCCTACCCCTTTCCTTTGTTAGAATCCTAT
1 GGTTCAGCAATTTCCTACCCCTTTCCTTTGTTAGAATCCTAT
7238629 GGTTCAGCAATTTCCTACCCCTTTCCTTTGTTAGAATCCTAT
1 GGTTCAGCAATTTCCTACCCCTTTCCTTTGTTAGAATCCTAT
7238671 TGTAAACATG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.18, C:0.29, G:0.13, T:0.40
Consensus pattern (42 bp):
GGTTCAGCAATTTCCTACCCCTTTCCTTTGTTAGAATCCTAT
Found at i:7240510 original size:40 final size:40
Alignment explanation
Indices: 7240453--7241237 Score: 1261
Period size: 40 Copynumber: 19.6 Consensus size: 40
7240443 NTAACGGGGT
* * * **
7240453 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240493 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240533 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240573 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240613 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240653 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240693 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240733 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240773 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240813 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240853 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240893 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
7240933 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
* * **
7240973 TAAGTCCCGAAGGCATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
**
7241013 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCTAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
* ** * *
7241053 AAAGTCCCGAAAACATTTGTACGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
* * *
7241093 TAAGTCCTGAAGGCTTTTGTACGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
* * **
7241133 TAAGCCCCGAAGGCATTTGTGCAAGTTA-TTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAAT-TCCGGGC
* * * * *
7241173 TAAGTCCCGAAGGCATCTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAAT-TCCGGGC
* *
7241213 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
7241238 GGTTATATCC
Statistics
Matches: 698, Mismatches: 45, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
39 10 0.01
40 688 0.99
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
Found at i:7249437 original size:40 final size:40
Alignment explanation
Indices: 7249377--7249560 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
7249367 TATTCGAATG
*
7249377 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
7249417 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
7249457 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* * *
7249497 ATATCCGGGCTAAGTTCCGAAGGCATTAATGCTAGTGACC
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
7249537 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
7249561 CTTGTGTGAG
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 121 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:7249510 original size:80 final size:80
Alignment explanation
Indices: 7249377--7249560 Score: 262
Period size: 80 Copynumber: 2.3 Consensus size: 80
7249367 TATTCGAATG
* * *
7249377 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGATCCGAAGGCA
** *
7249442 TTTGTGCGAGTTG-CT
66 TTAATGCGAG-TGACC
* * *
7249457 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTTCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGATCCGAAGGCA
*
7249522 TTAATGCTAGTGACC
66 TTAATGCGAGTGACC
7249537 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
7249561 CTTGTGTGAG
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
79 2 0.02
80 91 0.98
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGATCCGAAGGCA
TTAATGCGAGTGACC
Found at i:7250059 original size:86 final size:86
Alignment explanation
Indices: 7249914--7250085 Score: 308
Period size: 86 Copynumber: 2.0 Consensus size: 86
7249904 AAATGCTTAC
* * *
7249914 TCCGTTTCTTTGATTCTCTGTTTTATAGATTTTGGTTCTTCAGCTATCGGACTCGGGATTGTTGA
1 TCCGTTTCTTTGATTCTCTGTTTTATAGATTTTGGTTCGTCAGCTATCAGACTCGGGATTGTCGA
7249979 AGTCGAAGTCGTCCACACTAT
66 AGTCGAAGTCGTCCACACTAT
7250000 TCCGTTTCTTTGATTCTCTGTTTTATAGATTTTGGTTCGTCAGCTATCAGACTCGGGATTGTCGA
1 TCCGTTTCTTTGATTCTCTGTTTTATAGATTTTGGTTCGTCAGCTATCAGACTCGGGATTGTCGA
*
7250065 AGTCGAGGTCGTCCACACTAT
66 AGTCGAAGTCGTCCACACTAT
7250086 CAAAGCCCTT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (86 bp):
TCCGTTTCTTTGATTCTCTGTTTTATAGATTTTGGTTCGTCAGCTATCAGACTCGGGATTGTCGA
AGTCGAAGTCGTCCACACTAT
Found at i:7253147 original size:22 final size:23
Alignment explanation
Indices: 7253120--7253185 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 23
7253110 AGCTCAGTTG
7253120 CAAGAGTTGACGGATAGAGGTTT
1 CAAGAGTTGACGGATAGAGGTTT
* * * *
7253143 C-AGAGTTGAAGGCT-CA-GTTG
1 CAAGAGTTGACGGATAGAGGTTT
*
7253163 CAAGAATTGACGGATAGAGGTTT
1 CAAGAGTTGACGGATAGAGGTTT
7253186 TGCTCGACCA
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
20 4 0.13
21 11 0.35
22 12 0.39
23 4 0.13
ACGTcount: A:0.30, C:0.11, G:0.33, T:0.26
Consensus pattern (23 bp):
CAAGAGTTGACGGATAGAGGTTT
Found at i:7257007 original size:40 final size:39
Alignment explanation
Indices: 7256952--7257127 Score: 212
Period size: 40 Copynumber: 4.4 Consensus size: 39
7256942 GATGATAACG
*
7256952 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATA-TCC
* *
7256992 GGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATATCC
* *
7257032 GGGCTAAGTCCCGAAGGTATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-AAGTACTATATCC
* *
7257072 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-CTATATCC
* *
7257112 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
7257128 TACTGGGTAT
Statistics
Matches: 121, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
39 17 0.14
40 101 0.83
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATATCC
Found at i:7257085 original size:80 final size:80
Alignment explanation
Indices: 7256952--7257129 Score: 238
Period size: 80 Copynumber: 2.2 Consensus size: 80
7256942 GATGATAACG
* * * *
7256952 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGAATTTGTG
1 GGGCTAAGTCCCGAAGGTATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGAATTTGAG
7257017 CGAGTTA-CTATATCC
66 CGAG-TAGCTATATCC
*
7257032 GGGCTAAGTCCCGAAGGTATTTGTGCGAACT-ACT-ATATCCGGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGTATTTGTGC-AACTGACTAAT-TCCGGGCTAAGTCCCGAAGGAATTTG
7257095 AGCGAGTAGCTATATCC
64 AGCGAGTAGCTATATCC
* *
7257112 -GGTTAAATCCCGAAGGTA
1 GGGCTAAGTCCCGAAGGTA
7257130 CTGGGTATGG
Statistics
Matches: 88, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
79 20 0.23
80 66 0.75
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGTATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGAATTTGAG
CGAGTAGCTATATCC
Found at i:7258851 original size:40 final size:40
Alignment explanation
Indices: 7258777--7259001 Score: 276
Period size: 40 Copynumber: 5.6 Consensus size: 40
7258767 AACCCAAGTA
* * *
7258777 CCTTCGGGATTTAG-CCGGACATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
7258816 CCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
7258856 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
*
7258899 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* ** *
7258939 CCTTCAGGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
7258979 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
7259002 CATCCGAATA
Statistics
Matches: 161, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 13 0.08
40 111 0.69
41 1 0.01
43 35 0.22
44 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:7258897 original size:83 final size:80
Alignment explanation
Indices: 7258777--7259001 Score: 317
Period size: 83 Copynumber: 2.8 Consensus size: 80
7258767 AACCCAAGTA
* * * * * *
7258777 CCTTCGGGATTTAG-CCGGACATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAG
1 CCTTCAGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
7258841 TCACTAGCACAAATT
66 TCACTAGCACAAATG
* * *
7258856 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCAGGACTTAGCCCGGATATAG-AA--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
7258921 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
*
7258939 CCTTCAGGACTTAGCCCGGATATAGGAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCAGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
7259002 CATCCGAATA
Statistics
Matches: 130, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 13 0.10
80 43 0.33
81 1 0.01
82 1 0.01
83 72 0.55
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCAGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:7261159 original size:27 final size:27
Alignment explanation
Indices: 7261129--7261183 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7261119 GGGGGCAAAA
*
7261129 CAGTCAGTTTACCATGTAGGGGCATTT
1 CAGTCAGTTTACCATATAGGGGCATTT
* * *
7261156 CAGTCATTTTACCCTATAGGGGTATTT
1 CAGTCAGTTTACCATATAGGGGCATTT
7261183 C
1 C
7261184 GCTAATTTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (27 bp):
CAGTCAGTTTACCATATAGGGGCATTT
Found at i:7261511 original size:19 final size:19
Alignment explanation
Indices: 7261476--7261513 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7261466 GTGTAAGGCC
*
7261476 CACGATCCCATTGGGCCCA
1 CACGATCCCATTCGGCCCA
7261495 CACGA-CCCATTTCGGCCCA
1 CACGATCCCA-TTCGGCCCA
7261514 AAATCAGCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.21, C:0.45, G:0.18, T:0.16
Consensus pattern (19 bp):
CACGATCCCATTCGGCCCA
Found at i:7263447 original size:43 final size:43
Alignment explanation
Indices: 7263399--7263564 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
7263389 GTTATCGAGA
* * *
7263399 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
*** * * *
7263442 TGTGATTATGCGTAAGAGCATGTCTAGGACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * * *
7263485 TATGATT-CTGTGTAAGACCCTATCTGGGACAGTGGCATCG-AT
1 TGTGATTAC-ATGTAAGACCATATCTGGGACATTGGCATCGTAT
* *
7263527 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -TGTGATTACATGTAAGACCATATCTGGGACATTGGCAT
7263565 TGTGCGAGCT
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
42 8 0.08
43 91 0.91
44 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
Found at i:7268387 original size:41 final size:41
Alignment explanation
Indices: 7268196--7268375 Score: 324
Period size: 41 Copynumber: 4.4 Consensus size: 41
7268186 GAACGCCATA
*
7268196 AAAAACTGAGCAATAGTGGCGTTTTTGGTCCAAACGTCGCT
1 AAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGTCGCT
7268237 AAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGTCGCT
1 AAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGTCGCT
7268278 AAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGTCGCT
1 AAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGTCGCT
* *
7268319 AAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGCCGCG
1 AAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGTCGCT
*
7268360 AAAAACTGAGCAATAG
1 AAAAACTAAGCAATAG
7268376 CAACGCTTTT
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 135 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (41 bp):
AAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGTCGCT
Found at i:7268421 original size:82 final size:82
Alignment explanation
Indices: 7268218--7268400 Score: 260
Period size: 82 Copynumber: 2.2 Consensus size: 82
7268208 ATAGTGGCGT
* * * *
7268218 TTTTGGTCCAAACGTCGCTAAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGTCGCTAAAAA
1 TTTTGGTCAAAACGCCGCTAAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGCCGCGAAAAA
*** *
7268283 CTAAGCAATAGTGGCGT
66 CTAAGCAATAGCAACGC
* *
7268300 TTTTGGTCCAAACGTCGCTAAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGCCGCGAAAAA
1 TTTTGGTCAAAACGCCGCTAAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGCCGCGAAAAA
*
7268365 CTGAGCAATAGCAACGC
66 CTAAGCAATAGCAACGC
7268382 TTTTGG-CAAAACGCCGCTA
1 TTTTGGTCAAAACGCCGCTA
7268401 TAGATTGAGG
Statistics
Matches: 92, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
81 11 0.12
82 81 0.88
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (82 bp):
TTTTGGTCAAAACGCCGCTAAAAACTAAGCAATAGTGGCGTTTTTGGTCCAAACGCCGCGAAAAA
CTAAGCAATAGCAACGC
Found at i:7268468 original size:40 final size:40
Alignment explanation
Indices: 7268379--7268699 Score: 345
Period size: 41 Copynumber: 7.9 Consensus size: 40
7268369 GCAATAGCAA
* * * * * * *
7268379 CGCTTTTGGCAAAACGCCGCTATAGATTGAGGTTTTAGTGG
1 CGCTTTTGGAAAAACGCCACTATTG-CTCAGTTTTTAGCGG
*
7268420 CGCTTTTGGAAAAACACCACTATTGCTCAGTTTTTAGCGG
1 CGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGG
* * * *
7268460 CGCATTTGGAAAAACGCCACTATAGGTCGAGGTTTTAGCGG
1 CGCTTTTGGAAAAACGCCACTATTGCTC-AGTTTTTAGCGG
* *
7268501 CGCCTTTGGAAAAACGCCGCTATTGCTCAGTTTTTTAGCGG
1 CGCTTTTGGAAAAACGCCACTATTGCTCAG-TTTTTAGCGG
* * ** *
7268542 CGCTTTTGGGAAAACGCCACTATAGAAACAGGTTTTAGCGG
1 CGCTTTTGGAAAAACGCCACTATTG-CTCAGTTTTTAGCGG
* * *
7268583 CGCTTTTGGAAAAACGCCACTATAGATCGAGATTTTAGCGG
1 CGCTTTTGGAAAAACGCCACTATTGCTC-AGTTTTTAGCGG
**
7268624 CGCTTTTGTTAAAACGCCACTATTGCTCAGTTTTTAGCGG
1 CGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGG
* * * *
7268664 CGCTTCTAGAAATACGCCGCTATTGCTCAGTTTTTA
1 CGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTA
7268700 TAGATTGAGG
Statistics
Matches: 237, Mismatches: 39, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
40 80 0.34
41 154 0.65
42 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (40 bp):
CGCTTTTGGAAAAACGCCACTATTGCTCAGTTTTTAGCGG
Found at i:7268474 original size:81 final size:81
Alignment explanation
Indices: 7268379--7268699 Score: 385
Period size: 82 Copynumber: 4.0 Consensus size: 81
7268369 GCAATAGCAA
* * * * *
7268379 CGCTTTTGGCAAAACGCCGCTATAGATTGAGGTTTTAGTGGCGCTTTTGGAAAAACACCACTATT
1 CGCTTTTGGAAAAACGCCACTATAGATTCAGGTTTTAGCGGCGCTTTTGGAAAAACGCCACTATT
7268444 GCTCAGTTTTTAGCGG
66 GCTCAGTTTTTAGCGG
* * * *
7268460 CGCATTTGGAAAAACGCCACTATAG-GTCGAGGTTTTAGCGGCGCCTTTGGAAAAACGCCGCTAT
1 CGCTTTTGGAAAAACGCCACTATAGATTC-AGGTTTTAGCGGCGCTTTTGGAAAAACGCCACTAT
7268524 TGCTCAGTTTTTTAGCGG
65 TGCTCAG-TTTTTAGCGG
* ** *
7268542 CGCTTTTGGGAAAACGCCACTATAGAAACAGGTTTTAGCGGCGCTTTTGGAAAAACGCCACTATA
1 CGCTTTTGGAAAAACGCCACTATAGATTCAGGTTTTAGCGGCGCTTTTGGAAAAACGCCACTATT
* *
7268607 GATCGAGATTTTAGCGG
66 GCTC-AGTTTTTAGCGG
** * * * * * * *
7268624 CGCTTTTGTTAAAACGCCACTATTG-CTCAGTTTTTAGCGGCGCTTCTAGAAATACGCCGCTATT
1 CGCTTTTGGAAAAACGCCACTATAGATTCAGGTTTTAGCGGCGCTTTTGGAAAAACGCCACTATT
7268688 GCTCAGTTTTTA
66 GCTCAGTTTTTA
7268700 TAGATTGAGG
Statistics
Matches: 205, Mismatches: 31, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
80 8 0.04
81 94 0.46
82 100 0.49
83 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (81 bp):
CGCTTTTGGAAAAACGCCACTATAGATTCAGGTTTTAGCGGCGCTTTTGGAAAAACGCCACTATT
GCTCAGTTTTTAGCGG
Found at i:7269387 original size:28 final size:28
Alignment explanation
Indices: 7269335--7269416 Score: 74
Period size: 29 Copynumber: 2.9 Consensus size: 28
7269325 ACTAACGTCT
* * * **
7269335 AAACCCATAAACTATAGATCGTAAATCCC
1 AAACCC-TAAACTATAAACCATAAATAAC
7269364 AAACCCTAAACTATAAACCATAAATAAC
1 AAACCCTAAACTATAAACCATAAATAAC
* * *
7269392 AAACTCTTAAACTGTAAACCCTAAA
1 AAAC-CCTAAACTATAAACCATAAA
7269417 ATCTAAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 21 0.48
29 23 0.52
ACGTcount: A:0.50, C:0.26, G:0.04, T:0.21
Consensus pattern (28 bp):
AAACCCTAAACTATAAACCATAAATAAC
Found at i:7269924 original size:7 final size:7
Alignment explanation
Indices: 7269912--7269967 Score: 67
Period size: 7 Copynumber: 7.6 Consensus size: 7
7269902 AAATCTTCAA
7269912 AAAAATT
1 AAAAATT
7269919 AAAAATTT
1 AAAAA-TT
7269927 AAAAATT
1 AAAAATT
*
7269934 AAAAACT
1 AAAAATT
*
7269941 AAAACTT
1 AAAAATT
7269948 AAAAACTT
1 AAAAA-TT
7269956 AAAAACTT
1 AAAAA-TT
7269964 AAAA
1 AAAA
7269968 TTTTAATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
7 22 0.51
8 21 0.49
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (7 bp):
AAAAATT
Found at i:7269937 original size:22 final size:23
Alignment explanation
Indices: 7269912--7269973 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 23
7269902 AAATCTTCAA
7269912 AAAAATTAAAAATTTAAAAA-TT
1 AAAAATTAAAAATTTAAAAACTT
* *
7269934 AAAAACT-AAAACTTAAAAACTT
1 AAAAATTAAAAATTTAAAAACTT
*
7269956 AAAAACTTAAAATTTTAA
1 AAAAA-TTAAAAATTTAA
7269974 TATTTAATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 11 0.34
22 13 0.41
23 1 0.03
24 7 0.22
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (23 bp):
AAAAATTAAAAATTTAAAAACTT
Found at i:7270041 original size:23 final size:24
Alignment explanation
Indices: 7270001--7270046 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
7269991 AATATTTCAG
* * *
7270001 TTAAAAAGATCAATATTC-AAAAT
1 TTAAAAAAATAAAAATTCTAAAAT
7270024 TTAAAAAAATAAAAATTCTAAAA
1 TTAAAAAAATAAAAATTCTAAAA
7270047 AATAATAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (24 bp):
TTAAAAAAATAAAAATTCTAAAAT
Found at i:7273334 original size:41 final size:40
Alignment explanation
Indices: 7273275--7273387 Score: 127
Period size: 41 Copynumber: 2.8 Consensus size: 40
7273265 AATAGGGCTT
** * *
7273275 TAGCGGCATTTTTGGTAAAACGCCGCTAAAAAATAGAGCAA
1 TAGCGGCGCTTTT-GTAAAACGCTGCTAAAAAACAGAGCAA
* * * *
7273316 TGGCGGTGCTTTCTGTAAAACGCTGCTAAAAACCAGAGCAT
1 TAGCGGCGCTTT-TGTAAAACGCTGCTAAAAAACAGAGCAA
7273357 TAGCGGCGCTTTTGATAAAACGCTGCTAAAA
1 TAGCGGCGCTTTTG-TAAAACGCTGCTAAAA
7273388 CTCATATAAC
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
40 2 0.03
41 57 0.95
42 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (40 bp):
TAGCGGCGCTTTTGTAAAACGCTGCTAAAAAACAGAGCAA
Found at i:7273423 original size:18 final size:18
Alignment explanation
Indices: 7273402--7273436 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7273392 TATAACCCCT
* *
7273402 AAAATCCTAAACCCTAAA
1 AAAATCATAAACACTAAA
7273420 AAAATCATAAACACTAA
1 AAAATCATAAACACTAA
7273437 TCTATAACCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAATCATAAACACTAAA
Found at i:7274064 original size:8 final size:8
Alignment explanation
Indices: 7274051--7274078 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7274041 ATTTAAAAAT
7274051 AAAAATTA
1 AAAAATTA
7274059 AAAAATTA
1 AAAAATTA
7274067 AAAAATTA
1 AAAAATTA
7274075 AAAA
1 AAAA
7274079 CTCAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAAATTA
Found at i:7274068 original size:15 final size:15
Alignment explanation
Indices: 7274040--7274088 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 15
7274030 GTTCTCATTT
*
7274040 AATTTAAAAA-TAAA
1 AATTAAAAAATTAAA
7274054 AATTAAAAAATTAAAA
1 AATTAAAAAATT-AAA
* *
7274070 AATTAAAAACTCAAA
1 AATTAAAAAATTAAA
7274085 AATT
1 AATT
7274089 TAATATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 9 0.30
15 8 0.27
16 13 0.43
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (15 bp):
AATTAAAAAATTAAA
Found at i:7275456 original size:63 final size:63
Alignment explanation
Indices: 7275357--7275855 Score: 998
Period size: 63 Copynumber: 7.9 Consensus size: 63
7275347 GCTGACTTTT
7275357 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
1 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
7275420 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
1 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
7275483 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
1 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
7275546 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
1 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
7275609 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
1 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
7275672 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
1 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
7275735 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
1 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
7275798 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTG
1 GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTG
7275856 CTTACAAGCC
Statistics
Matches: 436, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 436 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.38
Consensus pattern (63 bp):
GCGACGCGTAATCAGTTCTTGTTGGAAAACCAATTACCTTTTTCGTGTTCTTGAATTGATTAG
Found at i:7285730 original size:94 final size:94
Alignment explanation
Indices: 7285569--7285850 Score: 494
Period size: 94 Copynumber: 3.0 Consensus size: 94
7285559 AATGTGACCG
* * *
7285569 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTCGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
7285634 GAATTAAAGGTCACTTTGTGTGCAGATTT
66 GAATTAAAGGTCACTTTGTGTGCAGATTT
7285663 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
7285728 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAAGGTCACTTTGTGTGCAGATTT
*
7285757 TATATGCTATTTGAATTAAGTAAATTGCCTTGTTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
7285822 GAATTAAATGG-CACTATGTGTGCAGATTT
66 GAATTAAA-GGTCACTTTGTGTGCAGATTT
7285851 GAATGTCGAT
Statistics
Matches: 180, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
94 179 0.99
95 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAAGGTCACTTTGTGTGCAGATTT
Found at i:7285911 original size:24 final size:24
Alignment explanation
Indices: 7285879--7285942 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
7285869 GAAAATTTCA
* *
7285879 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
7285903 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
7285927 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
7285943 ATTTGGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:7288180 original size:34 final size:33
Alignment explanation
Indices: 7288141--7288221 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 33
7288131 TTAGTCCTTC
7288141 TTTCAGTAGCAGTAACAATCTGGGCCTGAGCCCA
1 TTTCAGTA-CAGTAACAATCTGGGCCTGAGCCCA
*** * *
7288175 TTTCAGTATCAGTGGTAGTCTGGGCCTTAGCCCA
1 TTTCAGTA-CAGTAACAATCTGGGCCTGAGCCCA
*
7288209 TCTCAGTACAGTA
1 TTTCAGTACAGTA
7288222 TGAAAACATA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
33 4 0.10
34 35 0.90
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (33 bp):
TTTCAGTACAGTAACAATCTGGGCCTGAGCCCA
Found at i:7290492 original size:22 final size:22
Alignment explanation
Indices: 7290464--7290586 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
7290454 TTCCACATCC
7290464 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
7290486 ATCACATATATACACTTTCAG-ATT
1 ATCACAT-T-GGC-CATTCGGCCTT
7290510 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
7290533 ATCACACAT-ACACATGTTC-ACATT
1 ATCACA-TTGGC-CA--TTCGGCCTT
7290557 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
7290580 ATCACAT
1 ATCACAT
7290587 ATATATACAC
Statistics
Matches: 71, Mismatches: 18, Indels: 24
0.63 0.16 0.21
Matches are distributed among these distances:
22 29 0.41
23 10 0.14
24 10 0.14
25 22 0.31
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:7290499 original size:47 final size:47
Alignment explanation
Indices: 7290436--7290748 Score: 484
Period size: 47 Copynumber: 6.6 Consensus size: 47
7290426 CCCTTCGGGA
* * *
7290436 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
7290483 CTTATCACATATATACACTTTCAGATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
7290530 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
7290577 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
7290626 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
7290673 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
7290722 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
7290749 TATTCAAATA
Statistics
Matches: 246, Mismatches: 14, Indels: 12
0.90 0.05 0.04
Matches are distributed among these distances:
46 1 0.00
47 156 0.63
49 88 0.36
50 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:7290619 original size:96 final size:96
Alignment explanation
Indices: 7290436--7290748 Score: 506
Period size: 96 Copynumber: 3.3 Consensus size: 96
7290426 CCCTTCGGGA
* * *
7290436 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
*
7290499 ACTTTCAGATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
* *
7290530 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
*
7290594 CACTTTCACATTCATCACATTGGCCATTCGGT
65 CACTTTCACATTCATCACATTGGCCATTCGGC
* *
7290626 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
*
7290691 ACTTTCACATTCATCACATTGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
7290722 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
7290749 TATTCAAATA
Statistics
Matches: 202, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.00
94 48 0.24
96 152 0.75
97 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:7290734 original size:143 final size:141
Alignment explanation
Indices: 7290436--7290748 Score: 484
Period size: 143 Copynumber: 2.2 Consensus size: 141
7290426 CCCTTCGGGA
* * *
7290436 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * *
7290501 TTTCAGATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATACACATGTTCACATTCATCACATT
*
7290566 GGCCATTCGGC
131 GGCCATTAGGC
*
7290577 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGTCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
7290642 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT-TTCACATTCATC
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ACATACACA-TGTTCACATTCATC
7290706 ACATTGGCCATTAGGC
126 ACATTGGCCATTAGGC
7290722 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
7290749 TATTCAAATA
Statistics
Matches: 157, Mismatches: 10, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
141 8 0.05
143 106 0.68
145 42 0.27
146 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATACACATGTTCACATTCATCACATT
GGCCATTAGGC
Found at i:7292145 original size:85 final size:85
Alignment explanation
Indices: 7292016--7292194 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
7292006 TATTTTATTG
*
7292016 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
7292081 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
7292101 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
7292166 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
7292186 CCCATGCTC
1 CCCATGCTC
7292195 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:7296937 original size:35 final size:34
Alignment explanation
Indices: 7296891--7296985 Score: 111
Period size: 34 Copynumber: 2.8 Consensus size: 34
7296881 TTTCAGTTAG
* *
7296891 GGGCCTTAGCCCTTTTTCAGTAGCAGTAACAGTCT
1 GGGCCTTAGCCCATTTT-AGTACCAGTAACAGTCT
**
7296926 GGGCCTTAGCCCATTTTAGTACCAGTGGCAGTCT
1 GGGCCTTAGCCCATTTTAGTACCAGTAACAGTCT
* * *
7296960 AGGCCTTAGCCCACTTCAGTA-CAGTA
1 GGGCCTTAGCCCATTTTAGTACCAGTA
7296986 TGCAAACACA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
33 4 0.08
34 32 0.62
35 16 0.31
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.28
Consensus pattern (34 bp):
GGGCCTTAGCCCATTTTAGTACCAGTAACAGTCT
Found at i:7299384 original size:67 final size:67
Alignment explanation
Indices: 7299276--7299406 Score: 244
Period size: 67 Copynumber: 2.0 Consensus size: 67
7299266 GATTTTGAAA
7299276 AATCACCAAAAATAGTATAAATTGAATCAGAGACTGAATGAGATATAAAATTAAATCTTAATGAT
1 AATCACCAAAAATAGTATAAATTGAATCAGAGACTGAATGAGATATAAAATTAAATCTTAATGAT
7299341 TC
66 TC
* *
7299343 AATCACCAAAAATAGTATAAATTGAATCAGAGATTGAATGAGATATCAAATTAAATCTTAATGA
1 AATCACCAAAAATAGTATAAATTGAATCAGAGACTGAATGAGATATAAAATTAAATCTTAATGA
7299407 GTATATTTTC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (67 bp):
AATCACCAAAAATAGTATAAATTGAATCAGAGACTGAATGAGATATAAAATTAAATCTTAATGAT
TC
Found at i:7321018 original size:43 final size:43
Alignment explanation
Indices: 7320920--7321067 Score: 131
Period size: 43 Copynumber: 3.4 Consensus size: 43
7320910 TATCGAGATG
** * ** *
7320920 TGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTATTT
1 TGATTACATGTAAGACCATGACTGGGACATTAGCATCATATTA
* *
7320963 TCATTACGTGTAAGACCATGACTGGGACATTAGCATCATATTA
1 TGATTACATGTAAGACCATGACTGGGACATTAGCATCATATTA
* **
7321006 TGATTCCATGTAAGACTC-TTTCTGGGACAATT-GCATCGATA-TA
1 TGATTACATGTAAGAC-CATGACTGGGAC-ATTAGCATC-ATATTA
* *
7321049 TGATAACATGTATGACCAT
1 TGATTACATGTAAGACCAT
7321068 ATCTGAGATA
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 1 0.01
43 77 0.91
44 7 0.08
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGACTGGGACATTAGCATCATATTA
Found at i:7336504 original size:36 final size:36
Alignment explanation
Indices: 7336459--7336542 Score: 159
Period size: 36 Copynumber: 2.3 Consensus size: 36
7336449 AGAAATATTT
7336459 ATTTCTTATTTTATGTTTTTAATTTTTACTGAAATTA
1 ATTT-TTATTTTATGTTTTTAATTTTTACTGAAATTA
7336496 ATTTTTATTTTATGTTTTTAATTTTTACTGAAATTA
1 ATTTTTATTTTATGTTTTTAATTTTTACTGAAATTA
7336532 ATTTTTATTTT
1 ATTTTTATTTT
7336543 TATTAGATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 43 0.91
37 4 0.09
ACGTcount: A:0.26, C:0.04, G:0.05, T:0.65
Consensus pattern (36 bp):
ATTTTTATTTTATGTTTTTAATTTTTACTGAAATTA
Found at i:7340462 original size:15 final size:15
Alignment explanation
Indices: 7340442--7340473 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7340432 CAAGAATGGC
7340442 TACATGTATGTAGGG
1 TACATGTATGTAGGG
7340457 TACATGTATGTAGGG
1 TACATGTATGTAGGG
7340472 TA
1 TA
7340474 GATGAAGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.06, G:0.31, T:0.34
Consensus pattern (15 bp):
TACATGTATGTAGGG
Found at i:7341443 original size:60 final size:59
Alignment explanation
Indices: 7341304--7341416 Score: 165
Period size: 60 Copynumber: 1.9 Consensus size: 59
7341294 CTATTTAAAA
* *
7341304 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGTAT-ACTGGGCC-TAGACCATATCAATATCAATCTGGGCCATAGCCCCTTACAG
*
7341364 TATCAGAGTATACTGGGCCTAGACCATATCAGTATCAATCTGGGCCATAGCCC
1 -ATCAGAGTATACTGGGCCTAGACCATATCAATATCAATCTGGGCCATAGCCC
7341417 TGTAACAAGT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
60 31 0.65
61 16 0.33
62 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTAGACCATATCAATATCAATCTGGGCCATAGCCCCTTACAG
Found at i:7341452 original size:60 final size:59
Alignment explanation
Indices: 7341304--7341455 Score: 152
Period size: 60 Copynumber: 2.5 Consensus size: 59
7341294 CTATTTAAAA
* *
7341304 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGTAT-ACTGGGCCTT-GCACATATCAATATCAATCTGGGCCATAGCCCCTTACAG
* *
7341364 TATCAGAGTATACTGGGCCTAG-ACCATATCAGTATCAATCTGGGCCATAG-CCCTGTAACA-
1 -ATCAGAGTATACTGGGCCTTGCA-CATATCAATATCAATCTGGGCCATAGCCCCT-T-ACAG
*
7341424 AGTC-GAGATATATTGGGCCTTGCACATATCAA
1 A-TCAGAG-TATACTGGGCCTTGCACATATCAA
7341456 CACATTTGGC
Statistics
Matches: 77, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
59 8 0.10
60 47 0.61
61 21 0.27
62 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTTGCACATATCAATATCAATCTGGGCCATAGCCCCTTACAG
Found at i:7342491 original size:37 final size:37
Alignment explanation
Indices: 7342391--7342493 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
7342381 CGAATAGTCC
* *
7342391 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
7342428 CCACGCGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
7342465 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
7342494 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:7342692 original size:48 final size:48
Alignment explanation
Indices: 7342634--7342854 Score: 379
Period size: 48 Copynumber: 4.6 Consensus size: 48
7342624 ATATACACAC
*
7342634 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
7342682 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
7342730 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
7342778 ATCTTATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
7342826 ATCTCATATATATTTCACATTAGCCATTC
1 ATCTCATACATATTTCACACTAGCCATTC
7342855 TCCTGAGCAA
Statistics
Matches: 164, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 164 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:7346349 original size:25 final size:22
Alignment explanation
Indices: 7346295--7346349 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
7346285 TTTCGGATAG
*
7346295 AGAAGAAAAGAAGGAGAAAATA
1 AGAAGAAAAGAAGGAGAAAAGA
*
7346317 AAATAGAAGAAGAGAGGAGAAAAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
7346342 AGGAAGAA
1 A-GAAGAA
7346350 TTCGGCACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:7355206 original size:30 final size:30
Alignment explanation
Indices: 7355170--7355230 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
7355160 TTCCCGAGCC
7355170 TAGGGGCAAAAGT-GTAATTATGCAAAAGTT
1 TAGGGGCAAAA-TAGTAATTATGCAAAAGTT
* *
7355200 TAGGGGCAAAATAGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATAGTAATTATGCAAAAGTT
7355230 T
1 T
7355231 GTATTAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAATAGTAATTATGCAAAAGTT
Found at i:7355956 original size:49 final size:49
Alignment explanation
Indices: 7355884--7356071 Score: 268
Period size: 49 Copynumber: 3.8 Consensus size: 49
7355874 TGAGGTCACG
*
7355884 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * *
7355933 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT-GGTCGCA
* * *
7355984 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
*
7356033 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
7356072 GCTTTGGCTA
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 76 0.63
50 4 0.03
51 40 0.33
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:7356052 original size:100 final size:100
Alignment explanation
Indices: 7355879--7356071 Score: 359
Period size: 100 Copynumber: 1.9 Consensus size: 100
7355869 TATTGTGAGG
7355879 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
7355944 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* *
7355979 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
7356044 AAGTGCAGGCTACTATGCGTACCAGATA
66 AAGTGCAGGCTACTATGCGTACCAGATA
7356072 GCTTTGGCTA
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 90 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:7358156 original size:25 final size:26
Alignment explanation
Indices: 7358107--7358157 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7358097 AACATTCCTA
*
7358107 TATATAAAATTTTAATAAATGAAATT
1 TATATAAAATTTTAAAAAATGAAATT
7358133 TATAT-AAATTATTAAAAAAT-AAATT
1 TATATAAAATT-TTAAAAAATGAAATT
7358158 AAAAATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (26 bp):
TATATAAAATTTTAAAAAATGAAATT
Found at i:7363797 original size:40 final size:40
Alignment explanation
Indices: 7363753--7364101 Score: 583
Period size: 40 Copynumber: 8.8 Consensus size: 40
7363743 GAATGCACAT
* * *
7363753 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
7363793 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
7363833 CACCAGCACGATTGCTCTTCGGGACTTAG-CCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
7363872 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
7363912 CATCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
7363952 CAGCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
7363992 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
7364032 CACCAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
7364072 CACTAGCACGAATACTCTTCGGGACTTAGC
1 CACCAGCACGAATGCTCTTCGGGACTTAGC
7364102 TTGGCTATAT
Statistics
Matches: 290, Mismatches: 18, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
39 37 0.13
40 253 0.87
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:7367830 original size:48 final size:48
Alignment explanation
Indices: 7367757--7367898 Score: 230
Period size: 48 Copynumber: 3.0 Consensus size: 48
7367747 CACAAGATAA
* * *
7367757 AGATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAAAGGCTAGTGTGAAATATGTATG
*
7367805 AGATATGTATATGTGGTAAAGCCGAAAGGGTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAAAGGCTAGTGTGAAATATGTATG
* *
7367853 AGATATGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAAAGGCTAGTGTGAAATATGTA
7367899 GGAGTGTGGG
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 87 1.00
ACGTcount: A:0.35, C:0.06, G:0.30, T:0.30
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAAAGGCTAGTGTGAAATATGTATG
Found at i:7368173 original size:40 final size:40
Alignment explanation
Indices: 7368118--7368860 Score: 1153
Period size: 40 Copynumber: 18.6 Consensus size: 40
7368108 GGAAATAAGA
*
7368118 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
*
7368158 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
* *
7368198 CCCGAAGAGCATTCGAGCTGGTGTTATATCCGGGCTAAGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
* * * * *
7368238 CTCGAAGAGCATTCGTGCTAGTGATATATCCGGGATAAGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
7368278 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
*
7368318 CCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
*
7368358 CCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
*
7368398 CCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
*
7368438 CCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
*
7368478 CCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
** *
7368518 CCCGAAGAGCATTCGACCTGGTGTTATATCTGGGCTAGGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
* *
7368558 CCCGAAGAGCATTCGAGCTGGTGTTATATCCGGGCTAAGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
* * * * *
7368598 CCTGAAGAGCATTTGAGCTGGTGTTATATCCTGGCTAAGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
* * * * *
7368638 CTCGAAGAGCATTCGTGCTAGTGATATATCCGGGATAAGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
7368678 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
*
7368718 CCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
** *
7368758 CCCGAAGAGCATTCGACCTGGTGTTATATCTGGGCTAGGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
* *
7368798 CCCGAAGAGCATTCGAGCTGGTGTTATATCCGGGCTAAGT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
* *
7368838 CTCGAAGAGCATTCATGCTGGTG
1 CCCGAAGAGCATTCGTGCTGGTG
7368861 ATGTGTATTC
Statistics
Matches: 657, Mismatches: 46, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 657 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
Found at i:7370034 original size:37 final size:37
Alignment explanation
Indices: 7369975--7370120 Score: 204
Period size: 37 Copynumber: 3.9 Consensus size: 37
7369965 AGCTCAGATG
* *
7369975 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
7370012 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA-A
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * * *
7370048 TATATTTCCACACGTAGTCATCAGGTCTTACCTGGACA
1 -AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
7370086 TAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
7370121 ATATATTTCC
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
36 1 0.01
37 93 0.98
38 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:7370077 original size:74 final size:74
Alignment explanation
Indices: 7369980--7370131 Score: 250
Period size: 74 Copynumber: 2.1 Consensus size: 74
7369970 AGATGAAATC
* * *
7369980 TCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGAAGTCATCAGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTCACCCG
7370045 GAATATATT
66 GAATATATT
* * *
7370054 TCCACACGTAGTCATCAGGTCTTACCTGGACATAATCTCCACACGTAGTCATCGGGTCTCACCCG
1 TCCACACGAAGTCATCAGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTCACCCG
7370119 GAATATATT
66 GAATATATT
7370128 TCCA
1 TCCA
7370132 AGTTTCATGT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (74 bp):
TCCACACGAAGTCATCAGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTCACCCG
GAATATATT
Found at i:7370439 original size:46 final size:46
Alignment explanation
Indices: 7370274--7370732 Score: 724
Period size: 46 Copynumber: 9.8 Consensus size: 46
7370264 CCTACATACT
* * * *
7370274 TCACACTAGCCCTTCGGCTTTACCACATATACGTATCTCATACATA
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
* * *
7370320 TTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATA
1 --TCACATTAGCCATTCGGCTTTACCACATATACATATC-C-CATACATA
7370370 TTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
1 --TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
*
7370418 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
7370464 TTTCACATTAG--ATTCGGCTTTACCACATATACATATCCCATACATA
1 --TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
7370510 TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
7370556 TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
7370602 TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
*
7370648 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
*
7370694 TTTCACATTAGCCATTCGGATTTACCACATATACATATC
1 --TCACATTAGCCATTCGGCTTTACCACATATACATATC
7370733 TTTATCTTGT
Statistics
Matches: 391, Mismatches: 12, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
44 9 0.02
46 251 0.64
48 86 0.22
49 1 0.00
50 44 0.11
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (46 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCCCATACATA
Found at i:7372352 original size:61 final size:61
Alignment explanation
Indices: 7372257--7372378 Score: 217
Period size: 61 Copynumber: 2.0 Consensus size: 61
7372247 CATCCTTTTT
*
7372257 TTTAAGCACTCAAACTCAATCGTCTTCATGCCTCATCACCACAACATCAAACACCAACCAA
1 TTTAAGCACTCAAACTCAATCATCTTCATGCCTCATCACCACAACATCAAACACCAACCAA
* *
7372318 TTTAAGCACTCAAACTCAATCATCTTCATGCCTCATCACCACAACATCAAGCGCCAACCAA
1 TTTAAGCACTCAAACTCAATCATCTTCATGCCTCATCACCACAACATCAAACACCAACCAA
7372379 GAAGACAACA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.37, C:0.36, G:0.06, T:0.21
Consensus pattern (61 bp):
TTTAAGCACTCAAACTCAATCATCTTCATGCCTCATCACCACAACATCAAACACCAACCAA
Found at i:7373002 original size:48 final size:48
Alignment explanation
Indices: 7372926--7373020 Score: 172
Period size: 48 Copynumber: 2.0 Consensus size: 48
7372916 TATGACTCGG
*
7372926 TTTTGTGGTCCCGAAACCACTTTTCGACTAGGGTCACATTAGGGGTGA
1 TTTTGTGGTCCCGAAACCACTTTCCGACTAGGGTCACATTAGGGGTGA
*
7372974 TTTTGTGGTCTCGAAACCACTTTCCGACTAGGGTCACATTAGGGGTG
1 TTTTGTGGTCCCGAAACCACTTTCCGACTAGGGTCACATTAGGGGTG
7373021 TCACAACTCG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (48 bp):
TTTTGTGGTCCCGAAACCACTTTCCGACTAGGGTCACATTAGGGGTGA
Found at i:7373592 original size:215 final size:215
Alignment explanation
Indices: 7373221--7373650 Score: 860
Period size: 215 Copynumber: 2.0 Consensus size: 215
7373211 ATGTTTTTGC
7373221 TTTGCAGAACTTTCTTATTTCCTAGCTTTCGACTAACTCAATCTTTTCTGCTACTCCCAAACCCT
1 TTTGCAGAACTTTCTTATTTCCTAGCTTTCGACTAACTCAATCTTTTCTGCTACTCCCAAACCCT
7373286 TGGATTCCTTTCATAGTGGGATCTAATTCATGAATTGAGCACATAATAAAATAAATTTATTTCCT
66 TGGATTCCTTTCATAGTGGGATCTAATTCATGAATTGAGCACATAATAAAATAAATTTATTTCCT
7373351 GTGGGGAAAATTAAATTCTCTCTATAGGTAAGAAACAAAAGTTATTTGAGAAAATAAATTTCACT
131 GTGGGGAAAATTAAATTCTCTCTATAGGTAAGAAACAAAAGTTATTTGAGAAAATAAATTTCACT
7373416 ATATTACAGCAAAGTAACTA
196 ATATTACAGCAAAGTAACTA
7373436 TTTGCAGAACTTTCTTATTTCCTAGCTTTCGACTAACTCAATCTTTTCTGCTACTCCCAAACCCT
1 TTTGCAGAACTTTCTTATTTCCTAGCTTTCGACTAACTCAATCTTTTCTGCTACTCCCAAACCCT
7373501 TGGATTCCTTTCATAGTGGGATCTAATTCATGAATTGAGCACATAATAAAATAAATTTATTTCCT
66 TGGATTCCTTTCATAGTGGGATCTAATTCATGAATTGAGCACATAATAAAATAAATTTATTTCCT
7373566 GTGGGGAAAATTAAATTCTCTCTATAGGTAAGAAACAAAAGTTATTTGAGAAAATAAATTTCACT
131 GTGGGGAAAATTAAATTCTCTCTATAGGTAAGAAACAAAAGTTATTTGAGAAAATAAATTTCACT
7373631 ATATTACAGCAAAGTAACTA
196 ATATTACAGCAAAGTAACTA
7373651 CATTCAATGG
Statistics
Matches: 215, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
215 215 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (215 bp):
TTTGCAGAACTTTCTTATTTCCTAGCTTTCGACTAACTCAATCTTTTCTGCTACTCCCAAACCCT
TGGATTCCTTTCATAGTGGGATCTAATTCATGAATTGAGCACATAATAAAATAAATTTATTTCCT
GTGGGGAAAATTAAATTCTCTCTATAGGTAAGAAACAAAAGTTATTTGAGAAAATAAATTTCACT
ATATTACAGCAAAGTAACTA
Found at i:7378558 original size:22 final size:20
Alignment explanation
Indices: 7378510--7378558 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
7378500 ATTTCACTAC
*
7378510 TCAAATCCATAACCAAAACA
1 TCAAATCAATAACCAAAACA
7378530 TACCAAATCAATATACCAAAATCA
1 T--CAAATCAATA-ACCAAAA-CA
7378554 TCAAA
1 TCAAA
7378559 CTTACATGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 13 0.54
23 7 0.29
24 3 0.12
ACGTcount: A:0.55, C:0.27, G:0.00, T:0.18
Consensus pattern (20 bp):
TCAAATCAATAACCAAAACA
Found at i:7379370 original size:43 final size:43
Alignment explanation
Indices: 7379336--7379418 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
7379326 CTTACATGTT
* * * *
7379336 ATCACATATCGATGCCACTGTCCTAGACAGGGTCTTACACGAA
1 ATCAAATAACGATGCCAATGTCCCAGACAGGGTCTTACACGAA
* *
7379379 ATCAAATAACGATGCTAATGTCCCAGACATGGTCTTACAC
1 ATCAAATAACGATGCCAATGTCCCAGACAGGGTCTTACAC
7379419 ATAATCTCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
ATCAAATAACGATGCCAATGTCCCAGACAGGGTCTTACACGAA
Found at i:7379442 original size:43 final size:43
Alignment explanation
Indices: 7379347--7379460 Score: 106
Period size: 43 Copynumber: 2.7 Consensus size: 43
7379337 TCACATATCG
* * * *
7379347 ATGCCACTGTCCTAGACAGGGTCTTACACGAAATCAAATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATAACA
* * *
7379390 ATGCTAATGTCCCAGACATGGTCTTACAC-ATAATCTCAAT-GCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGA-AATC-AAATAACA
* **
7379433 ATGCCAATGTCTCAGATGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
7379461 TGTAATCACA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
42 1 0.02
43 54 0.93
44 3 0.05
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATAACA
Found at i:7383020 original size:34 final size:34
Alignment explanation
Indices: 7382949--7383030 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 34
7382939 TGTGCTGAAT
* ** *
7382949 TGGGCTAAGGCCCACCCTAATACTGTTACTGTAA
1 TGGGCTAAGGCCCACACTAATACTGCCACAGTAA
*
7382983 TGGGCTAAGGCCCACACTAATATTGCCACAG-ATA
1 TGGGCTAAGGCCCACACTAATACTGCCACAGTA-A
*
7383017 TGGGCTTAGGCCCA
1 TGGGCTAAGGCCCA
7383031 GACTGTTTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
33 1 0.02
34 40 0.98
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (34 bp):
TGGGCTAAGGCCCACACTAATACTGCCACAGTAA
Found at i:7390556 original size:30 final size:31
Alignment explanation
Indices: 7390497--7390560 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
7390487 ACTTAATAAG
*
7390497 CAAATGCTTCTAAAGTAATAAAAAAAATTAA
1 CAAATGCTTCTAAAATAATAAAAAAAATTAA
*
7390528 CAAATGCCTT-TAAAATAAT-AAGAAAATTAA
1 CAAATG-CTTCTAAAATAATAAAAAAAATTAA
7390558 CAA
1 CAA
7390561 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 13 0.43
31 14 0.47
32 3 0.10
ACGTcount: A:0.58, C:0.11, G:0.06, T:0.25
Consensus pattern (31 bp):
CAAATGCTTCTAAAATAATAAAAAAAATTAA
Found at i:7396960 original size:14 final size:14
Alignment explanation
Indices: 7396939--7396970 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
7396929 ACATGGTTTC
7396939 TTATTATAT-GTT-
1 TTATTATATAGTTA
7396951 TTATTATATAGTTA
1 TTATTATATAGTTA
7396965 TTATTA
1 TTATTA
7396971 CTTATTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 3 0.17
14 6 0.33
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (14 bp):
TTATTATATAGTTA
Found at i:7400673 original size:42 final size:42
Alignment explanation
Indices: 7400612--7400732 Score: 138
Period size: 42 Copynumber: 2.8 Consensus size: 42
7400602 GTATTTCAGT
* *
7400612 ATCGATGCCTCTGTCCCAGACAAGGTCTTACACGAAA-TCAG
1 ATCGATGCCTGTGTCCCAGACAAGGTCTTACACGAAACTCAA
* *
7400653 ATACGATGCCTGTATCCCAGACATA-GTCTTACATGTAAATCTCAA
1 AT-CGATGCCTGTGTCCCAGACA-AGGTCTTACACG-AAA-CTCAA
* *
7400698 ATCGAGGCCTGTGTCCCAGACACGGTCTTACACGA
1 ATCGATGCCTGTGTCCCAGACAAGGTCTTACACGA
7400733 TAGCTCAGAT
Statistics
Matches: 66, Mismatches: 8, Indels: 10
0.79 0.10 0.12
Matches are distributed among these distances:
41 2 0.03
42 27 0.41
43 5 0.08
44 27 0.41
45 5 0.08
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (42 bp):
ATCGATGCCTGTGTCCCAGACAAGGTCTTACACGAAACTCAA
Found at i:7404977 original size:40 final size:40
Alignment explanation
Indices: 7404940--7405070 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
7404930 GCTACTCGTT
*
7404940 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGAGACATAACCCGGATT-TAGTAACTCGCA
* * *
7404980 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGAGACATAACCCGGATTTAGTAACTCGCA
* * * * *
7405020 CAAATGCCTTCG-GGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGAGACATAACCCGGATTTAGTAACTCGCA
*
7405059 CAACTGCCTTCG
1 CAAATGCCTTCG
7405071 GATCTTAGTC
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 34 0.43
40 44 0.55
41 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGAGACATAACCCGGATTTAGTAACTCGCA
Found at i:7405051 original size:79 final size:81
Alignment explanation
Indices: 7404940--7405124 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
7404930 GCTACTCGTT
* * * *
7404940 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCG-GGCTTAGCCCGGAATATAGTAACTCGCACAACTGCCTTC-GGATCTTAACCC
* *
7405003 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
7405020 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAACTGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAACTGCCTTCGGATCTTAACCCGG
* *
7405084 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
7405100 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
7405125 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.61
80 32 0.36
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAACTGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:7406503 original size:42 final size:42
Alignment explanation
Indices: 7406444--7406529 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
7406434 CTTGTCATGG
7406444 CCGGCCACTACTAGTTAGGGGGCGAATTTGACTGCAAGTCCC
1 CCGGCCACTACTAGTTAGGGGGCGAATTTGACTGCAAGTCCC
7406486 CCGGCCACTACTAGTTAGGGGGCGAATTTGACTGCAAGTCCC
1 CCGGCCACTACTAGTTAGGGGGCGAATTTGACTGCAAGTCCC
7406528 CC
1 CC
7406530 CTTTTTATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (42 bp):
CCGGCCACTACTAGTTAGGGGGCGAATTTGACTGCAAGTCCC
Found at i:7410815 original size:39 final size:39
Alignment explanation
Indices: 7410772--7410850 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
7410762 CGTTTACACA
7410772 TGATAGCCTCGGACGAAACACATTCCCGAGCGTATTTGC
1 TGATAGCCTCGGACGAAACACATTCCCGAGCGTATTTGC
7410811 TGATAGCCTCGGACGAAACACATTCCCGAGCGTATTTGC
1 TGATAGCCTCGGACGAAACACATTCCCGAGCGTATTTGC
7410850 T
1 T
7410851 AAGTCTAACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
TGATAGCCTCGGACGAAACACATTCCCGAGCGTATTTGC
Found at i:7413087 original size:79 final size:79
Alignment explanation
Indices: 7412943--7413160 Score: 230
Period size: 79 Copynumber: 2.7 Consensus size: 79
7412933 AAATCACGTA
* * * * *
7412943 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATATAG
*
7413007 TAACTCGCACAATTG
65 TAACTCGCACAAATG
*
7413022 CCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATATA
*
7413085 GTATCTCGCACAAATG
64 GTAACTCGCACAAATG
* * * *
7413101 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGTACAAATGCCTTCGGGACTTAGCCCGGA
7413161 CATCATTCAA
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.03
79 67 0.57
80 48 0.41
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:7413160 original size:40 final size:40
Alignment explanation
Indices: 7412957--7413160 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
7412947 CGGAATTTAA
** *
7412957 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
7412997 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
7413037 CCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
7413076 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
7413116 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
7413156 CCGGA
1 CCGGA
7413161 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:7416865 original size:14 final size:15
Alignment explanation
Indices: 7416846--7416875 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7416836 TTTGACTTTT
7416846 TTTTATCTTA-TAAG
1 TTTTATCTTATTAAG
7416860 TTTTATCTTATTAAG
1 TTTTATCTTATTAAG
7416875 T
1 T
7416876 ATGTTTCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.60
Consensus pattern (15 bp):
TTTTATCTTATTAAG
Found at i:7418956 original size:16 final size:16
Alignment explanation
Indices: 7418935--7418967 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7418925 AGGGGACACC
7418935 CCAAAAATCTCGAAAT
1 CCAAAAATCTCGAAAT
*
7418951 CCAAAAATCTTGAAAT
1 CCAAAAATCTCGAAAT
7418967 C
1 C
7418968 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.24, G:0.06, T:0.21
Consensus pattern (16 bp):
CCAAAAATCTCGAAAT
Found at i:7420501 original size:29 final size:29
Alignment explanation
Indices: 7420459--7420570 Score: 129
Period size: 29 Copynumber: 3.9 Consensus size: 29
7420449 ATAATATGAT
*
7420459 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAGTGGGCCATATGAATGTGAA
* * *
7420488 TTGGGCCTAGTGGGCCATAAGAATATAAA
1 TTGGGCCTAGTGGGCCATATGAATGTGAA
* *
7420517 CTGGGCC-AGATGGGCCATATGAATGAG-A
1 TTGGGCCTAG-TGGGCCATATGAATGTGAA
* *
7420545 TTGGGCCCAGTGGGCCATATGCATGT
1 TTGGGCCTAGTGGGCCATATGAATGT
7420571 ATGTAGGGGT
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
28 23 0.33
29 46 0.67
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (29 bp):
TTGGGCCTAGTGGGCCATATGAATGTGAA
Found at i:7431868 original size:13 final size:12
Alignment explanation
Indices: 7431849--7431882 Score: 50
Period size: 12 Copynumber: 2.7 Consensus size: 12
7431839 TCGTAACGAA
7431849 AAAAAAAAGAAGTC
1 AAAAAAAA-AA-TC
7431863 AAAAAAAAAATC
1 AAAAAAAAAATC
7431875 AAAAAAAA
1 AAAAAAAA
7431883 TTTTTGAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 10 0.50
13 2 0.10
14 8 0.40
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (12 bp):
AAAAAAAAAATC
Found at i:7433384 original size:79 final size:81
Alignment explanation
Indices: 7433282--7433466 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
7433272 GCTCCTCGTT
* *
7433282 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
** *
7433345 GGATTTAGTAAC-TCGCA
64 GGATACAGTAACTTAGCA
* **
7433362 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
7433426 ATACGGTCACTTAGCA
66 ATACAGTAACTTAGCA
7433442 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
7433467 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATACAGTAACTTAGCA
Found at i:7433466 original size:40 final size:40
Alignment explanation
Indices: 7433282--7433466 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
7433272 GCTCCTCGTT
* *
7433282 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
7433322 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
7433362 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* ** * *
7433401 CAAATGCCTTC-GGATCTTAGTCCGGATACGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
7433442 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
7433467 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 79 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:7434833 original size:12 final size:12
Alignment explanation
Indices: 7434808--7434845 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
7434798 AAAAGAGAAG
7434808 AAATTCAGAAAAA
1 AAATTCA-AAAAA
7434821 AAATTCAAAAAA
1 AAATTCAAAAAA
7434833 AAA-TCAAAAAA
1 AAATTCAAAAAA
7434844 AA
1 AA
7434846 GGAAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 10 0.40
12 8 0.32
13 7 0.28
ACGTcount: A:0.76, C:0.08, G:0.03, T:0.13
Consensus pattern (12 bp):
AAATTCAAAAAA
Done.