Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 212 of 284
Found at i:70419009 original size:11 final size:11
Alignment explanation
Indices: 70418979--70419037 Score: 54
Period size: 11 Copynumber: 5.7 Consensus size: 11
70418969 TTTCTTGTTT
70418979 TTTTATT-TTA
1 TTTTATTATTA
70418989 TTTTA-T-TTA
1 TTTTATTATTA
70418998 TTTTATTATTA
1 TTTTATTATTA
*
70419009 TATTA-TATTA
1 TTTTATTATTA
* *
70419019 ATATATTATTA
1 TTTTATTATTA
*
70419030 TTATATTA
1 TTTTATTA
70419038 ATTTCTTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
9 9 0.22
10 13 0.32
11 19 0.46
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:70419017 original size:13 final size:13
Alignment explanation
Indices: 70418981--70419037 Score: 57
Period size: 13 Copynumber: 4.6 Consensus size: 13
70418971 TCTTGTTTTT
* *
70418981 TTATTTTATTTTA
1 TTATATTATATTA
*
70418994 TT-TATTTTATTA
1 TTATATTATATTA
70419006 TTATATTATATTA
1 TTATATTATATTA
*
70419019 ATATA-T-TATTA
1 TTATATTATATTA
70419030 TTATATTA
1 TTATATTA
70419038 ATTTCTTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
11 9 0.26
12 11 0.31
13 15 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTATATTATATTA
Found at i:70419033 original size:19 final size:18
Alignment explanation
Indices: 70419004--70419039 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
70418994 TTTATTTTAT
70419004 TATTATATTATATTAATA
1 TATTATATTATATTAATA
70419022 TATTATTATTATATTAAT
1 TATTA-TATTATATTAAT
70419040 TTCTTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTATATTATATTAATA
Found at i:70425705 original size:115 final size:115
Alignment explanation
Indices: 70425559--70425787 Score: 404
Period size: 115 Copynumber: 2.0 Consensus size: 115
70425549 TGAAGCTTAG
70425559 TAACCCAAGAAGCACTTCGGTAAATTATAGTTATCAAGTTAATATGTAGCCCTAAGGATAAGATA
1 TAACCCAAGAAGCACTTCGGTAAATTATAGTTATCAAGTTAATATGTAGCCCTAAGGATAAGATA
*
70425624 ATAGAAAGTTCAAATTCCTTATGACTCTACCTTATAGATAGCTTTGAATA
66 ATAGAAAGTTCAAATTCCTTACGACTCTACCTTATAGATAGCTTTGAATA
* * * *
70425674 TAACCCAATAAGCACTTTGGTAAATTATAGTTATCAAGTTAATTTGTAGTCCTAAGGATAAGATA
1 TAACCCAAGAAGCACTTCGGTAAATTATAGTTATCAAGTTAATATGTAGCCCTAAGGATAAGATA
*
70425739 ATAGAAAGTTCAAATTCCTTACGACTCTATCTTATAGATAGCTTTGAAT
66 ATAGAAAGTTCAAATTCCTTACGACTCTACCTTATAGATAGCTTTGAAT
70425788 GTAATTCCAT
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
115 108 1.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (115 bp):
TAACCCAAGAAGCACTTCGGTAAATTATAGTTATCAAGTTAATATGTAGCCCTAAGGATAAGATA
ATAGAAAGTTCAAATTCCTTACGACTCTACCTTATAGATAGCTTTGAATA
Found at i:70427400 original size:29 final size:29
Alignment explanation
Indices: 70427368--70427425 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
70427358 GATTGAGATT
70427368 AAATTTGAGCCATTAGATGTATTTATAAC
1 AAATTTGAGCCATTAGATGTATTTATAAC
70427397 AAATTTGAGCCATTAGATGTATTTATAAC
1 AAATTTGAGCCATTAGATGTATTTATAAC
70427426 TTGGTGATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (29 bp):
AAATTTGAGCCATTAGATGTATTTATAAC
Found at i:70433365 original size:18 final size:17
Alignment explanation
Indices: 70433330--70433362 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
70433320 CTTTTTATTC
70433330 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
70433347 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
70433363 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:70436365 original size:17 final size:18
Alignment explanation
Indices: 70436343--70436376 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
70436333 ACAATGAGTC
*
70436343 TTCAAACAATG-GATCAT
1 TTCAAAAAATGTGATCAT
70436360 TTCAAAAAATGTGATCA
1 TTCAAAAAATGTGATCA
70436377 CGTGATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (18 bp):
TTCAAAAAATGTGATCAT
Found at i:70437576 original size:26 final size:26
Alignment explanation
Indices: 70437547--70437600 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
70437537 ACGAGCAAAA
70437547 AAATATGAGTTATAACTGAATTTGTT
1 AAATATGAGTTATAACTGAATTTGTT
70437573 AAATATGAGTTATAACTGAATTTGTT
1 AAATATGAGTTATAACTGAATTTGTT
70437599 AA
1 AA
70437601 CTTGAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.04, G:0.15, T:0.41
Consensus pattern (26 bp):
AAATATGAGTTATAACTGAATTTGTT
Found at i:70450270 original size:46 final size:46
Alignment explanation
Indices: 70450220--70450488 Score: 304
Period size: 46 Copynumber: 5.8 Consensus size: 46
70450210 TGGTTGAGCA
70450220 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70450266 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
70450311 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70450359 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
70450404 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
70450452 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70450489 GCGGGTTACA
Statistics
Matches: 190, Mismatches: 14, Indels: 38
0.79 0.06 0.16
Matches are distributed among these distances:
42 4 0.02
43 10 0.05
45 8 0.04
46 91 0.48
47 58 0.31
48 6 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70450376 original size:93 final size:93
Alignment explanation
Indices: 70450217--70450480 Score: 494
Period size: 93 Copynumber: 2.8 Consensus size: 93
70450207 GGATGGTTGA
70450217 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
70450282 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
70450310 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
70450375 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
70450403 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
70450467 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
70450481 ACTTATGGGC
Statistics
Matches: 168, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
92 2 0.01
93 166 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70463880 original size:22 final size:23
Alignment explanation
Indices: 70463846--70463893 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
70463836 AAAGGTAACC
70463846 TTTTTTCAT-TCTTGATTTTTTGTA
1 TTTTTTCATCT-TTG-TTTTTTGTA
70463870 TTTTTTC-TCTTTGTTTTTTGTA
1 TTTTTTCATCTTTGTTTTTTGTA
70463892 TT
1 TT
70463894 CAATTCTCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 11 0.48
23 4 0.17
24 8 0.35
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.75
Consensus pattern (23 bp):
TTTTTTCATCTTTGTTTTTTGTA
Found at i:70482122 original size:38 final size:38
Alignment explanation
Indices: 70482055--70482130 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
70482045 ATGTTTAACT
*
70482055 TTACAATCTCCCTTAAGATTTCCACCCAAAATCTTAAGA
1 TTACAATCTCCCTTAAGATTTCCACCC-AAACCTTAAGA
* * * *
70482094 TTACAA-CTCCTTTAAGGTTTCTATCCAAACCTTAAGA
1 TTACAATCTCCCTTAAGATTTCCACCCAAACCTTAAGA
70482131 CTTAACCCTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 10 0.31
38 16 0.50
39 6 0.19
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.33
Consensus pattern (38 bp):
TTACAATCTCCCTTAAGATTTCCACCCAAACCTTAAGA
Found at i:70483639 original size:3 final size:3
Alignment explanation
Indices: 70483631--70483655 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
70483621 AGACATGGTT
70483631 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
70483656 GTTTTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:70484685 original size:2 final size:2
Alignment explanation
Indices: 70484678--70484708 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
70484668 CTATGTAAGT
70484678 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70484709 TTAAGTAGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70485526 original size:20 final size:20
Alignment explanation
Indices: 70485482--70485519 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70485472 TTGAGAAGTC
*
70485482 TTAGAAATATTCGCAAATCG
1 TTAGAAATATACGCAAATCG
*
70485502 TTAGAAATATAGGCAAAT
1 TTAGAAATATACGCAAAT
70485520 TTTTAGATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.29
Consensus pattern (20 bp):
TTAGAAATATACGCAAATCG
Found at i:70486902 original size:29 final size:29
Alignment explanation
Indices: 70486869--70486931 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
70486859 ACAACGTCAT
*
70486869 TTTTTAGTTACATGATTACCAAGTGAGTA
1 TTTTTAGTTACATGACTACCAAGTGAGTA
70486898 TTTTTAGTTACATGACTACCAAGTGAGTA
1 TTTTTAGTTACATGACTACCAAGTGAGTA
70486927 TTTTT
1 TTTTT
70486932 TTTATTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.44
Consensus pattern (29 bp):
TTTTTAGTTACATGACTACCAAGTGAGTA
Found at i:70487144 original size:15 final size:15
Alignment explanation
Indices: 70487124--70487175 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
70487114 ACTAAAAAAC
70487124 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
70487139 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
70487158 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
70487173 ATT
1 ATT
70487176 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:70487404 original size:31 final size:32
Alignment explanation
Indices: 70487331--70487404 Score: 75
Period size: 31 Copynumber: 2.4 Consensus size: 32
70487321 AGATAAAGAA
* *
70487331 TTAAATATTTATGTTTAATAATATTGAAAAAT
1 TTAAATATTTTTATTTAATAATATTGAAAAAT
* *
70487363 AT-AATA-TTTTATATTAAT-ATATT-AATAAT
1 TTAAATATTTTTAT-TTAATAATATTGAAAAAT
70487392 TTAAATATTTTTA
1 TTAAATATTTTTA
70487405 AAAATAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
29 6 0.18
30 13 0.38
31 14 0.41
32 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (32 bp):
TTAAATATTTTTATTTAATAATATTGAAAAAT
Found at i:70490269 original size:21 final size:19
Alignment explanation
Indices: 70490235--70490296 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
70490225 TAAGCTGTAT
70490235 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
70490257 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
70490279 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
70490297 GTAATTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:70490362 original size:14 final size:14
Alignment explanation
Indices: 70490343--70490372 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70490333 TAAAAAACAA
*
70490343 AATAAATAATATAT
1 AATAAAAAATATAT
70490357 AATAAAAAATATAT
1 AATAAAAAATATAT
70490371 AA
1 AA
70490373 GAAAGATAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAAAAATATAT
Found at i:70490365 original size:21 final size:21
Alignment explanation
Indices: 70490320--70490372 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
70490310 AAAATATAGT
*
70490320 AAAATAAATAGTATAAAAAAC
1 AAAATAAATAATATAAAAAAC
*
70490341 AAAATAAATAATATATAATAA-
1 AAAATAAATAATATA-AAAAAC
*
70490362 AAAATATATAA
1 AAAATAAATAA
70490373 GAAAGATAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (21 bp):
AAAATAAATAATATAAAAAAC
Found at i:70490884 original size:18 final size:20
Alignment explanation
Indices: 70490863--70490908 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 20
70490853 ATTTATAGAT
*
70490863 AAAATATAT-GATAATAA-A
1 AAAATATATGGAAAATAATA
70490881 AAAATA-ATGGAAAATAATA
1 AAAATATATGGAAAATAATA
*
70490900 ATAATATAT
1 AAAATATAT
70490909 ATAGCTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 2 0.09
18 13 0.57
19 6 0.26
20 2 0.09
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (20 bp):
AAAATATATGGAAAATAATA
Found at i:70493185 original size:207 final size:206
Alignment explanation
Indices: 70492565--70493525 Score: 1483
Period size: 206 Copynumber: 4.7 Consensus size: 206
70492555 AGATCTGTTT
* * *
70492565 CTTCGATTTGTTCTCTAATAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * *
70492630 GCGAAAACCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAACACAATGATACCAAACCATATT
66 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAATGATGCCAAACCATCTT
* * ** * *
70492695 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATG
70492760 GAGACGCCAAA
196 GAGACGCCAAA
* *
70492771 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGT-GTAAGCA
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA-TCGTAAGCA
* * * *
70492835 CGTGAAAGCTAAATCAGCTATGAT-TTTGATTTGTTCCTTGTAAACACAATGATGCCAAATCATC
65 CGTGAAAACCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAACACAATGATGCCAAACCATC
* * *
70492899 TTGGATCTTCTTCAGTATAAACATATGAAAGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATA
129 TTGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATA
70492964 TGGAGACGCCAAA
194 TGGAGACGCCAAA
*
70492977 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * * *
70493042 GTGAAAGCCAAATCAGCTATGTCTTCGATTTCGCTCCTCGTAAGCACAAGGATGCCAAACCATCT
66 GTGAAAACCAAATCAGCTATGTCTTCGATTT-GTTCCTTGTAAACACAATGATGCCAAACCATCT
* *
70493107 TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTTCCATGTATCTGCTCTCCGTCGAATAT
130 TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATAT
*
70493172 AGAGACGCCAAA
195 GGAGACGCCAAA
70493184 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
70493249 GTGAAATCCAAATCAGCTATGTCTTCGATTTGTT-C-------CACAAGGATGCCAAATCATCTT
66 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAATGATGCCAAACCATCTT
70493306 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATG
70493371 GAGACGCCAAA
196 GAGACGCCAAA
*
70493382 ATTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
70493447 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAATGATGCTAAACCATCTT
66 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAATGATGCCAAACCATCTT
70493512 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
70493526 CCAGATCTGC
Statistics
Matches: 691, Mismatches: 50, Indels: 27
0.90 0.07 0.04
Matches are distributed among these distances:
198 191 0.28
199 1 0.00
205 3 0.00
206 294 0.43
207 202 0.29
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAATGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATG
GAGACGCCAAA
Found at i:70498871 original size:21 final size:21
Alignment explanation
Indices: 70498845--70498887 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
70498835 GGAGGGCTTG
70498845 ATATCCATCACCAAGAAATTA
1 ATATCCATCACCAAGAAATTA
70498866 ATATCCATCACCAAGAAATTA
1 ATATCCATCACCAAGAAATTA
70498887 A
1 A
70498888 CTTCATATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.23, G:0.05, T:0.23
Consensus pattern (21 bp):
ATATCCATCACCAAGAAATTA
Found at i:70503397 original size:26 final size:26
Alignment explanation
Indices: 70503367--70503422 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
70503357 TGAAATTCCC
70503367 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
70503393 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
70503419 ATCA
1 ATCA
70503423 ATTTTTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:70510452 original size:26 final size:26
Alignment explanation
Indices: 70510421--70510528 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
70510411 TGAAATGCCC
*
70510421 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
70510447 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
70510473 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
70510499 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
70510525 ATCA
1 ATCA
70510529 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:70514619 original size:21 final size:21
Alignment explanation
Indices: 70514584--70514636 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
70514574 AAAATATGGT
* *
70514584 AAAATAATTAGTATA-AAAAA
1 AAAATAAATAATATATAAAAA
*
70514604 CAAAATAAATAATATATAATAA
1 -AAAATAAATAATATATAAAAA
*
70514626 AAAATATATAA
1 AAAATAAATAA
70514637 GAAAGATAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (21 bp):
AAAATAAATAATATATAAAAA
Found at i:70514626 original size:14 final size:14
Alignment explanation
Indices: 70514607--70514636 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70514597 TAAAAAACAA
*
70514607 AATAAATAATATAT
1 AATAAAAAATATAT
70514621 AATAAAAAATATAT
1 AATAAAAAATATAT
70514635 AA
1 AA
70514637 GAAAGATAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAAAAATATAT
Found at i:70517432 original size:683 final size:683
Alignment explanation
Indices: 70516127--70517496 Score: 2715
Period size: 683 Copynumber: 2.0 Consensus size: 683
70516117 AATTTATAGA
70516127 TAAAATATATGATAATAAAAAAATAATGGAAAATAATAATATATATAGCTAATATTTATAAAAAA
1 TAAAATATATGATAATAAAAAAATAATGGAAAATAATAATATATATAGCTAATATTTATAAAAAA
*
70516192 TATATAAAGTATTTAAAGTAAATTAAAATATAAAAAGGTTTAAACTTGAATTTAATTAGAAAATC
66 AATATAAAGTATTTAAAGTAAATTAAAATATAAAAAGGTTTAAACTTGAATTTAATTAGAAAATC
70516257 TAAGGTTAATTTGCAAAATAATAAAAAAATTCTGAGCCTGATTTGAAATGCGCGTTAAATTCAGA
131 TAAGGTTAATTTGCAAAATAATAAAAAAATTCTGAGCCTGATTTGAAATGCGCGTTAAATTCAGA
70516322 GGACTCACTGGGCAATTTGCCCTAATCCTAAACGACACCGTTTTTCGAATACTGTTTTAAAAACA
196 GGACTCACTGGGCAATTTGCCCTAATCCTAAACGACACCGTTTTTCGAATACTGTTTTAAAAACA
70516387 CCGAAGGGACTAAATTGAAACAAAATTAAATAATTAGGGCTAAATTAAAAATAAATAAGATGAAA
261 CCGAAGGGACTAAATTGAAACAAAATTAAATAATTAGGGCTAAATTAAAAATAAATAAGATGAAA
*
70516452 TTATAAAAATTAAAAAAACGAGAGGGCCAATTGGGCAATTAACCCACTTTACGAAAACACGCGGA
326 TTATAAAAATTAAAAAAACGAGAGGGCCAATTAGGCAATTAACCCACTTTACGAAAACACGCGGA
70516517 TCCTCCCCGGGTAATCGGGTCAACACGCGGACCTTGGAAGCTTTAGAACGACACCGTTTTGGGCT
391 TCCTCCCCGGGTAATCGGGTCAACACGCGGACCTTGGAAGCTTTAGAACGACACCGTTTTGGGCT
70516582 TATTAGATGAAGCAGAAACGATGTCGTTTCGTTGAGGCTATATAAGCCAAATGTTAAGCTTCAAA
456 TATTAGATGAAGCAGAAACGATGTCGTTTCGTTGAGGCTATATAAGCCAAATGTTAAGCTTCAAA
70516647 ATCATTTAGCACCTGGTTTAGAAAAAAAAAAGAGAGAAATCCTCTGAAATTCTTCCCAGCCCTTT
521 ATCATTTAGCACCTGGTTTAGAAAAAAAAAAGAGAGAAATCCTCTGAAATTCTTCCCAGCCCTTT
70516712 GAGCTCCGGCCCTAGGCCGGTCTGCTCCGTTCATCGGACCTCCGTGCTCAGCCTCACGCGCCGTC
586 GAGCTCCGGCCCTAGGCCGGTCTGCTCCGTTCATCGGACCTCCGTGCTCAGCCTCACGCGCCGTC
70516777 ACCAACTCCGCCACACACGGCGGTCGGGATTCG
651 ACCAACTCCGCCACACACGGCGGTCGGGATTCG
70516810 TAAAATATATGATAATAAAAAAATAATGGAAAATAATAATATATATAGCTAATATTTATAAAAAA
1 TAAAATATATGATAATAAAAAAATAATGGAAAATAATAATATATATAGCTAATATTTATAAAAAA
70516875 AATATAAAGTATTTAAAGTAAATTAAAATATAAAAAGGTTTAAACTTGAATTTAATTAGAAAATC
66 AATATAAAGTATTTAAAGTAAATTAAAATATAAAAAGGTTTAAACTTGAATTTAATTAGAAAATC
70516940 TAAGGTTAATTTGCAAAATAATAAAAAAATTCTGAGCCTGATTTGAAATGCGCGTTAAATTCAGA
131 TAAGGTTAATTTGCAAAATAATAAAAAAATTCTGAGCCTGATTTGAAATGCGCGTTAAATTCAGA
70517005 GGACTCACTGGGCAATTTGCCCTAATCCTAAACGACACCGTTTTTCGAATACTGTTTTAAAAACA
196 GGACTCACTGGGCAATTTGCCCTAATCCTAAACGACACCGTTTTTCGAATACTGTTTTAAAAACA
70517070 CCGAAGGGACTAAATTGAAACAAAATTAAATAATTAGGGCTAAATTAAAAATAAATAAGATGAAA
261 CCGAAGGGACTAAATTGAAACAAAATTAAATAATTAGGGCTAAATTAAAAATAAATAAGATGAAA
70517135 TTATAAAAATTAAAAAAACGAGAGGGCCAATTAGGCAATTAACCCACTTTACGAAAACACGCGGA
326 TTATAAAAATTAAAAAAACGAGAGGGCCAATTAGGCAATTAACCCACTTTACGAAAACACGCGGA
70517200 TCCTCCCCGGGTAATCGGGTCAACACGCGGACCTTGGAAGCTTTAGAACGACACCGTTTTGGGCT
391 TCCTCCCCGGGTAATCGGGTCAACACGCGGACCTTGGAAGCTTTAGAACGACACCGTTTTGGGCT
70517265 TATTAGATGAAGCAGAAACGATGTCGTTTCGTTGAGGCTATATAAGCCAAATGTTAAGCTTCAAA
456 TATTAGATGAAGCAGAAACGATGTCGTTTCGTTGAGGCTATATAAGCCAAATGTTAAGCTTCAAA
70517330 ATCATTTAGCACCTGGTTTAGAAAAAAAAAAGAGAGAAATCCTCTGAAATTCTTCCCAGCCCTTT
521 ATCATTTAGCACCTGGTTTAGAAAAAAAAAAGAGAGAAATCCTCTGAAATTCTTCCCAGCCCTTT
70517395 GAGCTCCGGCCCTAGGCCGGTCTGCTCCGTTCATCGGACCTCCGTGCTCAGCCTCACGCGCCGTC
586 GAGCTCCGGCCCTAGGCCGGTCTGCTCCGTTCATCGGACCTCCGTGCTCAGCCTCACGCGCCGTC
70517460 ACCAACTCCGCCACACACGGCGGTCGGGATTCG
651 ACCAACTCCGCCACACACGGCGGTCGGGATTCG
70517493 -AAAA
1 TAAAA
70517497 GCTTCGCTTT
Statistics
Matches: 685, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
682 4 0.01
683 681 0.99
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (683 bp):
TAAAATATATGATAATAAAAAAATAATGGAAAATAATAATATATATAGCTAATATTTATAAAAAA
AATATAAAGTATTTAAAGTAAATTAAAATATAAAAAGGTTTAAACTTGAATTTAATTAGAAAATC
TAAGGTTAATTTGCAAAATAATAAAAAAATTCTGAGCCTGATTTGAAATGCGCGTTAAATTCAGA
GGACTCACTGGGCAATTTGCCCTAATCCTAAACGACACCGTTTTTCGAATACTGTTTTAAAAACA
CCGAAGGGACTAAATTGAAACAAAATTAAATAATTAGGGCTAAATTAAAAATAAATAAGATGAAA
TTATAAAAATTAAAAAAACGAGAGGGCCAATTAGGCAATTAACCCACTTTACGAAAACACGCGGA
TCCTCCCCGGGTAATCGGGTCAACACGCGGACCTTGGAAGCTTTAGAACGACACCGTTTTGGGCT
TATTAGATGAAGCAGAAACGATGTCGTTTCGTTGAGGCTATATAAGCCAAATGTTAAGCTTCAAA
ATCATTTAGCACCTGGTTTAGAAAAAAAAAAGAGAGAAATCCTCTGAAATTCTTCCCAGCCCTTT
GAGCTCCGGCCCTAGGCCGGTCTGCTCCGTTCATCGGACCTCCGTGCTCAGCCTCACGCGCCGTC
ACCAACTCCGCCACACACGGCGGTCGGGATTCG
Found at i:70519716 original size:5 final size:5
Alignment explanation
Indices: 70519706--70519733 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
70519696 TGAGTGCCCT
70519706 TTTAA TTTAA TTTAA TTTAA TTTAA TTT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTT
70519734 CTTCTCACTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAA
Found at i:70536898 original size:56 final size:55
Alignment explanation
Indices: 70536806--70536951 Score: 193
Period size: 56 Copynumber: 2.6 Consensus size: 55
70536796 AGAGGGGTGT
*
70536806 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGGGATATTA
1 TAGGATATTATTATGGGATATTAT-TTTTAGTAATTTGATTCCTAATGGGATATTA
* **
70536862 TAGGATATAATTATGGGATATTATTTCTTAGTAATTTGATTTGTAATGGGATATTA
1 TAGGATATTATTATGGGATATTATTT-TTAGTAATTTGATTCCTAATGGGATATTA
* * **
70536918 GATGATATTATTATAAGATATTATTTTTTAGTAA
1 TAGGATATTATTATGGGATATTA-TTTTTAGTAA
70536952 ATTAGTTCCT
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
55 2 0.03
56 74 0.94
57 3 0.04
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (55 bp):
TAGGATATTATTATGGGATATTATTTTTAGTAATTTGATTCCTAATGGGATATTA
Found at i:70537115 original size:24 final size:24
Alignment explanation
Indices: 70537083--70537131 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
70537073 ATAAGGCTTG
70537083 GCAATATATTTTGATTGAAGTTTA
1 GCAATATATTTTGATTGAAGTTTA
70537107 GCAATATATTTTGATTGAAGTTTA
1 GCAATATATTTTGATTGAAGTTTA
70537131 G
1 G
70537132 TATAGTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.18, T:0.45
Consensus pattern (24 bp):
GCAATATATTTTGATTGAAGTTTA
Found at i:70537140 original size:21 final size:22
Alignment explanation
Indices: 70537086--70537142 Score: 80
Period size: 24 Copynumber: 2.5 Consensus size: 22
70537076 AGGCTTGGCA
70537086 ATATATTTTGATTGAAGTTTAG
1 ATATATTTTGATTGAAGTTTAG
70537108 CAATATATTTTGATTGAAGTTTAG
1 --ATATATTTTGATTGAAGTTTAG
*
70537132 -TATAGTTTGAT
1 ATATATTTTGAT
70537143 GTAGAGTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 10 0.31
24 22 0.69
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.49
Consensus pattern (22 bp):
ATATATTTTGATTGAAGTTTAG
Found at i:70547023 original size:15 final size:16
Alignment explanation
Indices: 70546997--70547044 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
70546987 TCTAAATTAC
70546997 AACTGAAGTAAAAAC-A
1 AACTGAA-TAAAAACTA
*
70547013 AACTTAATAAAAACTA
1 AACTGAATAAAAACTA
*
70547029 AACTGAATAACAACTA
1 AACTGAATAAAAACTA
70547045 TTCATAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 7 0.25
16 21 0.75
ACGTcount: A:0.60, C:0.15, G:0.06, T:0.19
Consensus pattern (16 bp):
AACTGAATAAAAACTA
Found at i:70559915 original size:24 final size:24
Alignment explanation
Indices: 70559888--70559937 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
70559878 ATATTTTTAG
70559888 TTATTTATCACTAATTACCAACTT
1 TTATTTATCACTAATTACCAACTT
70559912 TTATTTATCACTAATTACCAACTT
1 TTATTTATCACTAATTACCAACTT
70559936 TT
1 TT
70559938 GATTCAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (24 bp):
TTATTTATCACTAATTACCAACTT
Found at i:70560439 original size:12 final size:12
Alignment explanation
Indices: 70560422--70560448 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
70560412 TTCCTTCTTA
70560422 TTTGTTTCCTTT
1 TTTGTTTCCTTT
70560434 TTTGTTTCCTTT
1 TTTGTTTCCTTT
70560446 TTT
1 TTT
70560449 TCTTTAACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.07, T:0.78
Consensus pattern (12 bp):
TTTGTTTCCTTT
Found at i:70565036 original size:17 final size:17
Alignment explanation
Indices: 70565014--70565050 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
70565004 AAGAAGAGAT
70565014 AGAAGAGCGGGTGGAAA
1 AGAAGAGCGGGTGGAAA
*
70565031 AGAAGAGCGGTTGGAAA
1 AGAAGAGCGGGTGGAAA
70565048 AGA
1 AGA
70565051 TTCAGCGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.43, T:0.08
Consensus pattern (17 bp):
AGAAGAGCGGGTGGAAA
Found at i:70573364 original size:50 final size:50
Alignment explanation
Indices: 70573309--70573409 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
70573299 GGCATAAATA
70573309 GGTCCATCAAATGGATTATAAAAGTCATGTTCACCAGAGAACAGATCAAT
1 GGTCCATCAAATGGATTATAAAAGTCATGTTCACCAGAGAACAGATCAAT
70573359 GGTCCATCAAATGGATTATAAAAGTCATGTTCACCAGAGAACAGATCAAT
1 GGTCCATCAAATGGATTATAAAAGTCATGTTCACCAGAGAACAGATCAAT
70573409 G
1 G
70573410 AAGATAGCAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.24
Consensus pattern (50 bp):
GGTCCATCAAATGGATTATAAAAGTCATGTTCACCAGAGAACAGATCAAT
Found at i:70573607 original size:49 final size:49
Alignment explanation
Indices: 70573488--70573821 Score: 226
Period size: 49 Copynumber: 6.8 Consensus size: 49
70573478 TACTGACAGC
* *
70573488 GGAACAGATTGAAGCTACAATAGCGGATCTTACTTCCCCGA-C-ATTGCAAT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTT--CCGAGCGA-TGCAAT
** * * * *
70573538 TCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCGAGCGATGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCGAGCGATGCAAT
* * ** **
70573587 GGAACAGATTGAAGCTACAACAACGAATCTCACTTCCTCGATATCGCAAT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCGAGCGAT-GCAAT
** * * * * * * *
70573637 TCAAAATATTAAAGCCACAACGGCGAATCTTACTCCCGAGCGATGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCGAGCGATGCAAT
* * * * *
70573686 GGAACGGATTGAAGCTACAACAGCAAATCTCACCTCCCCGA-C-ATTGTAAT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTA-CT-TCCGAGCGA-TGCAAT
** * * ** * * *
70573736 TTAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCAAGTGATGCAGT
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCGAGCGATGCAAT
* *
70573785 GGAACGGATTGAAGCTACAACAGCGAATCTCACTTCC
1 GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCC
70573822 CCGACATTGC
Statistics
Matches: 207, Mismatches: 69, Indels: 17
0.71 0.24 0.06
Matches are distributed among these distances:
48 7 0.03
49 101 0.49
50 94 0.45
51 5 0.02
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (49 bp):
GGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCGAGCGATGCAAT
Found at i:70573659 original size:99 final size:99
Alignment explanation
Indices: 70573488--70573870 Score: 543
Period size: 99 Copynumber: 3.9 Consensus size: 99
70573478 TACTGACAGC
* * *
70573488 GGAACAGATTGAAGCTACAATAGCGGATCTTACTTCCCCGACATTGCAATTCAAAAGATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGC
70573553 CACAACGGCGAATCTTACTTCCGAGCGATGCAGT
66 CACAACGGCGAATCTTACTTCCGAGCGATGCAGT
* * * * * *
70573587 GGAACAGATTGAAGCTACAACAACGAATCTCACTTCCTCGATATCGCAATTCAAAATATTAAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGC
*
70573652 CACAACGGCGAATCTTACTCCCGAGCGATGCAGT
66 CACAACGGCGAATCTTACTTCCGAGCGATGCAGT
* * * * *
70573686 GGAACGGATTGAAGCTACAACAGCAAATCTCACCTCCCCGACATTGTAATTTAAAAGATTGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGC
* * *
70573751 CACAATGGCGAATCTTACTTCCAAGTGATGCAGT
66 CACAACGGCGAATCTTACTTCCGAGCGATGCAGT
* ** *
70573785 GGAACGGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGC-AGCCAAAAGATCGAAGC
1 GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGC
* *
70573849 CACAACGGTGAATCTTATTTCC
66 CACAACGGCGAATCTTACTTCC
70573871 TCGGCGAGAC
Statistics
Matches: 249, Mismatches: 35, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
98 32 0.13
99 217 0.87
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (99 bp):
GGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGC
CACAACGGCGAATCTTACTTCCGAGCGATGCAGT
Found at i:70573848 original size:49 final size:49
Alignment explanation
Indices: 70573493--70573870 Score: 203
Period size: 49 Copynumber: 7.7 Consensus size: 49
70573483 ACAGCGGAAC
* * * **
70573493 AGATTGAAGCTACAATAGCGGATCTTACTTCCCCGACATTGCAATTCAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCCGACATTGC-AGGCAAA
* * *
70573543 AGATTGAAGCCACAACGGCGAATCTTACTT--CCGAGCGA-TGCAGTGGAAC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCCGA-C-ATTGCAG-GCAAA
* * * * * * **
70573592 AGATTGAAGCTACAACAACGAATCTCACTTCCTCGATATCGCAATTCAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCCGACATTGC-AGGCAAA
* * * * *
70573642 ATATTAAAGCCACAACGGCGAATCTTAC-T-CCCGAGCGA-TGCAGTGGAAC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCCGA-C-ATTGCAG-GCAAA
* * * * * * ***
70573691 GGATTGAAGCTACAACAGCAAATCTCACCTCCCCGACATTGTAATTTAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCCGACATTG-CAGGCAAA
** ** ** * *
70573741 AGATTGAAGCCACAATGGCGAATCTTACTTCCAAGTGA-TGCAGTGGAAC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAG-GCAAA
* * * *
70573790 GGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCAGCCAAA
1 AGATTGAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGGCAAA
* * * *
70573839 AGATCGAAGCCACAACGGTGAATCTTATTTCC
1 AGATTGAAGCCACAACAGCGAATCTTACTTCC
70573871 TCGGCGAGAC
Statistics
Matches: 233, Mismatches: 79, Indels: 33
0.68 0.23 0.10
Matches are distributed among these distances:
48 11 0.05
49 120 0.52
50 92 0.39
51 10 0.04
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (49 bp):
AGATTGAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGGCAAA
Found at i:70574399 original size:12 final size:12
Alignment explanation
Indices: 70574382--70574408 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
70574372 TTCCTTCTTA
70574382 TTTGTTTCCTTT
1 TTTGTTTCCTTT
70574394 TTTGTTTCCTTT
1 TTTGTTTCCTTT
70574406 TTT
1 TTT
70574409 TCTTTAACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.07, T:0.78
Consensus pattern (12 bp):
TTTGTTTCCTTT
Found at i:70576883 original size:17 final size:18
Alignment explanation
Indices: 70576860--70576903 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
70576850 ATTTTATCAT
70576860 TTTATTTTTTTAAATTTA
1 TTTATTTTTTTAAATTTA
* *
70576878 -TTATTTATTTGAATTTA
1 TTTATTTTTTTAAATTTA
70576895 TTTATTTTT
1 TTTATTTTT
70576904 ATTTAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTATTTTTTTAAATTTA
Found at i:70576883 original size:22 final size:22
Alignment explanation
Indices: 70576845--70576887 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
70576835 GTAATTTAAA
70576845 TTTAAATTTTATCATTTTATTTT
1 TTTAAATTTTATCA-TTTATTTT
*
70576868 TTTAAA-TTTATTATTTATTT
1 TTTAAATTTTATCATTTATTT
70576888 GAATTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 6 0.32
23 6 0.32
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTAAATTTTATCATTTATTTT
Found at i:70577749 original size:16 final size:18
Alignment explanation
Indices: 70577716--70577751 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
70577706 TGAATGATGG
70577716 TATTATTTAAATATTAAA
1 TATTATTTAAATATTAAA
70577734 TATT-TTTAAA-ATTAAA
1 TATTATTTAAATATTAAA
70577750 TA
1 TA
70577752 ACATAATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 6 0.33
18 4 0.22
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTATTTAAATATTAAA
Found at i:70579183 original size:16 final size:17
Alignment explanation
Indices: 70579164--70579196 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
70579154 CTATCTATCT
70579164 ATACGAAATT-ATAAAA
1 ATACGAAATTAATAAAA
70579180 ATACGAAATTAATAAAA
1 ATACGAAATTAATAAAA
70579197 TTCACAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.24
Consensus pattern (17 bp):
ATACGAAATTAATAAAA
Found at i:70582382 original size:82 final size:82
Alignment explanation
Indices: 70582281--70582447 Score: 334
Period size: 82 Copynumber: 2.0 Consensus size: 82
70582271 TGAATAAGAT
70582281 CTTCTTCGGCTTTTGTTAAATATTTCTAAGTTCTTTCGTTTCTACGCTCTTAAAAGCCGATTTTT
1 CTTCTTCGGCTTTTGTTAAATATTTCTAAGTTCTTTCGTTTCTACGCTCTTAAAAGCCGATTTTT
70582346 ATTTATCCTTTCCAATA
66 ATTTATCCTTTCCAATA
70582363 CTTCTTCGGCTTTTGTTAAATATTTCTAAGTTCTTTCGTTTCTACGCTCTTAAAAGCCGATTTTT
1 CTTCTTCGGCTTTTGTTAAATATTTCTAAGTTCTTTCGTTTCTACGCTCTTAAAAGCCGATTTTT
70582428 ATTTATCCTTTCCAATA
66 ATTTATCCTTTCCAATA
70582445 CTT
1 CTT
70582448 TCGTTAACCC
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 85 1.00
ACGTcount: A:0.20, C:0.21, G:0.10, T:0.49
Consensus pattern (82 bp):
CTTCTTCGGCTTTTGTTAAATATTTCTAAGTTCTTTCGTTTCTACGCTCTTAAAAGCCGATTTTT
ATTTATCCTTTCCAATA
Found at i:70582917 original size:16 final size:16
Alignment explanation
Indices: 70582898--70582941 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
70582888 GGTAAATCCC
*
70582898 GAAAAGTCGAAATGCT
1 GAAAAGTCGAAATACT
*
70582914 GAAAAG-CTAAAATACT
1 GAAAAGTC-GAAATACT
70582930 GAAAAGTCGAAA
1 GAAAAGTCGAAA
70582942 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 1 0.04
16 21 0.91
17 1 0.04
ACGTcount: A:0.52, C:0.11, G:0.20, T:0.16
Consensus pattern (16 bp):
GAAAAGTCGAAATACT
Found at i:70583191 original size:28 final size:28
Alignment explanation
Indices: 70583159--70583245 Score: 86
Period size: 28 Copynumber: 3.1 Consensus size: 28
70583149 GACTGTAAAA
70583159 GTGATTGGGCCTAGTGGGCCATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
* *
70583187 GTGATTTGAGCCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
* * * * *
70583216 GAGATTAGACCTAGTGGGTCATAAGAAT
1 GTGATTGGGCCTAGTGGGCCATATGAAT
70583244 GT
1 GT
70583246 ATGTGGACTT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
28 23 0.49
29 23 0.49
30 1 0.02
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.29
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:70583221 original size:29 final size:29
Alignment explanation
Indices: 70583167--70583244 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
70583157 AAGTGATTGG
* *
70583167 GCCTAGTGGGCCATAT-AGATGTGATTTGA
1 GCCTAGTGGGCCATATGA-ATGAGATTAGA
*
70583196 GCCTAATGGGCCATATGAATGAGATTAGA
1 GCCTAGTGGGCCATATGAATGAGATTAGA
* *
70583225 -CCTAGTGGGTCATAAGAATG
1 GCCTAGTGGGCCATATGAATG
70583245 TATGTGGACT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 17 0.40
29 24 0.57
30 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
GCCTAGTGGGCCATATGAATGAGATTAGA
Found at i:70587282 original size:28 final size:30
Alignment explanation
Indices: 70587207--70587284 Score: 72
Period size: 28 Copynumber: 2.7 Consensus size: 30
70587197 CTATAAAAGT
* * *
70587207 GATTGTGCCTAGTGGACCATATAGATCTGA
1 GATTGGGCCTAGTGGGCCATATAGATATGA
* * * *
70587237 -TTTGGGTCTAATGTGCCATAT-GA-ATGA
1 GATTGGGCCTAGTGGGCCATATAGATATGA
70587264 GATTGGGCCTAGTGGGCCATA
1 GATTGGGCCTAGTGGGCCATA
70587285 AGCATGTATG
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
27 3 0.08
28 18 0.50
29 15 0.42
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.31
Consensus pattern (30 bp):
GATTGGGCCTAGTGGGCCATATAGATATGA
Found at i:70591314 original size:28 final size:28
Alignment explanation
Indices: 70591240--70591323 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
70591230 CTGTAAAAGT
* *
70591240 GATTGGGCCTAGTAGGCCATAT-AGATGT
1 GATTGGGCCTAGTGGGCCATATGA-ATGA
* *
70591268 GATTTAGGCCTAATGGGCCATATGAATGA
1 GA-TTGGGCCTAGTGGGCCATATGAATGA
*
70591297 GATTGGGCCTAGTGGGCCATAAGAATG
1 GATTGGGCCTAGTGGGCCATATGAATG
70591324 TATGTGGACT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
28 24 0.51
29 22 0.47
30 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.26
Consensus pattern (28 bp):
GATTGGGCCTAGTGGGCCATATGAATGA
Found at i:70594352 original size:25 final size:24
Alignment explanation
Indices: 70594317--70594366 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 24
70594307 ACACACCACA
*
70594317 GCTCTCTTGAGCTTCCCGATACTTT
1 GCTCTCATGAGCTTCCCGATA-TTT
70594342 GCTCTCATGAGCTTCCCGATATTT
1 GCTCTCATGAGCTTCCCGATATTT
70594366 G
1 G
70594367 GCTTACAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.14, C:0.30, G:0.18, T:0.38
Consensus pattern (24 bp):
GCTCTCATGAGCTTCCCGATATTT
Found at i:70594378 original size:25 final size:25
Alignment explanation
Indices: 70594325--70594382 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
70594315 CAGCTCTCTT
*
70594325 GAGCTTCCCGATACTTTGCTCTCAT
1 GAGCTTCCCGATACTTTGCTCTCAA
70594350 GAGCTTCCCGATA-TTTGGCT-TACAA
1 GAGCTTCCCGATACTTT-GCTCT-CAA
70594375 GAGCTTCC
1 GAGCTTCC
70594383 TGTTTACATG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCGATACTTTGCTCTCAA
Found at i:70596241 original size:25 final size:23
Alignment explanation
Indices: 70596189--70596243 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
70596179 TATAAATAGT
70596189 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
70596212 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
70596237 AATAGTG
1 AATAGTG
70596244 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:70596363 original size:22 final size:24
Alignment explanation
Indices: 70596305--70596372 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 24
70596295 ATAGATATAA
* *
70596305 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
70596329 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
70596353 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
70596373 CATGCAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 18 0.47
24 1 0.03
25 19 0.50
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:70596868 original size:16 final size:16
Alignment explanation
Indices: 70596830--70596868 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
70596820 CTCCAAAAAA
*
70596830 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
70596846 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
70596862 AATAACT
1 AAAAACT
70596869 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:70597052 original size:30 final size:30
Alignment explanation
Indices: 70597016--70597113 Score: 160
Period size: 30 Copynumber: 3.3 Consensus size: 30
70597006 AGGTACAAGT
*
70597016 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
70597046 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
* * *
70597076 GGTGGTAGAACAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
70597106 GGTGGTGG
1 GGTGGTGG
70597114 CAAAGGCTAG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.20, C:0.06, G:0.49, T:0.24
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:70597898 original size:87 final size:88
Alignment explanation
Indices: 70597760--70598317 Score: 440
Period size: 91 Copynumber: 6.2 Consensus size: 88
70597750 AACTCATTTA
* * * *
70597760 TCGCAATATGAATTGACTCTTT-AAAACTAAACATT-AAAAACAGAAATTGAAAATAGCTCAGCA
1 TCGCAATATGAGTTGATTTTTTGAAAAC-AAA-ATTGAAAAACAGAAATTGAAAATACCTCAGCA
* * *
70597823 CGTGAGCCAAGGCTCAACTCACTTC
64 TGTGAGCCGAGGCTCAACTCACCTC
* ** ** *
70597848 TCGCAATATGAGTTGA-TTTTT-AAAACAAAATTTGTAAAACAGATTTTGAAAATACCTTGGTAT
1 TCGCAATATGAGTTGATTTTTTGAAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCAGCAT
*
70597911 GTGA-CTCGAGGCTCAACTCACTTC
65 GTGAGC-CGAGGCTCAACTCACCTC
* * ** * * *
70597935 TAGTAATATGAGTTGA-TTTTTGCAAAGTATAAATTGAAAAAAAAAATCAATTGAAAATACCTCG
1 TCGCAATATGAGTTGATTTTTTG-AAAACA-AAATTG-AAAAACAGA--AATTGAAAATACCTCA
* * *
70597999 GCGTGTGATCTGAGGCTCAACTCACCTC
61 GCATGTGAGCCGAGGCTCAACTCACCTC
* * *
70598027 TCGCAATATGAGTTGATTTTTTTGACAAATATAAATTGAAAAAAAAAGAAATTGAAAATATCTCA
1 TCGCAATATGAGTTGA-TTTTTTGA-AAACA-AAATTG--AAAAACAGAAATTGAAAATACCTCA
* * *
70598092 --ACGTG-TCCTGAGGCTGAACTCACCTC
61 GCATGTGAGCC-GAGGCTCAACTCACCTC
*
70598118 TCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGC
1 TCGCAATATGAGTTGATTTTTT-G-AAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCAGC
* * * *
70598183 GTGTGAGTCAAGGCTCAACTCACCAC
63 ATGTGAGCCGAGGCTCAACTCACCTC
* * * *
70598209 TCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGC
1 TCGCAATATGAGTTGA-TTTTTTGAAA-ACA-AAATTGAAAAACAGAAATTGAAAATACCTCAGC
* * *
70598274 ATCT----TGAGGTTCAACTCACCTC
63 ATGTGAGCCGAGGCTCAACTCACCTC
* *
70598296 TCGTAATATGAGCTGATTTTTT
1 TCGCAATATGAGTTGATTTTTT
70598318 TTGAAAGACG
Statistics
Matches: 388, Mismatches: 58, Indels: 50
0.78 0.12 0.10
Matches are distributed among these distances:
85 1 0.00
86 12 0.03
87 99 0.26
88 15 0.04
89 29 0.07
90 23 0.06
91 107 0.28
92 60 0.15
93 16 0.04
94 17 0.04
95 9 0.02
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (88 bp):
TCGCAATATGAGTTGATTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCATG
TGAGCCGAGGCTCAACTCACCTC
Found at i:70598173 original size:13 final size:14
Alignment explanation
Indices: 70598141--70598173 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
70598131 TGATTTTTTG
70598141 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
70598155 GAAAAACAGAATTT
1 GAAAAACAAAATTT
70598169 GAAAA
1 GAAAA
70598174 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:70598465 original size:73 final size:74
Alignment explanation
Indices: 70598250--70598854 Score: 710
Period size: 73 Copynumber: 8.2 Consensus size: 74
70598240 GAAATTGAAG
* * * * * *
70598250 AACAGAAATGGAAAACACCTCA-GCATCTTGAGGTTCAACTCACCTCTCGTAATATGAGCTGATT
1 AACAGAAATTGAAAATACCTCACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
70598314 TTTTTTGA-A
65 TTTTTTGACA
* * *
70598323 AGACGGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACC-TCACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
70598388 --TTTTTGACA
64 TTTTTTTGACA
* * * *
70598397 AACAAAAATTGAAATTACCTCA-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATT
1 AACAGAAATTGAAAATACCTCACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
70598461 TTTTTGAAA
66 TTTTTGACA
* * * * *
70598470 AACAGAAGTTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCACAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTC-ACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
70598535 TTTTTTTA-A
65 TTTTTTGACA
*
70598544 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTC-ACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
70598609 --TTTTTGACA
64 TTTTTTTGACA
* * * * *
70598618 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCA-CGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
70598683 TTTTTTGAAA
65 TTTTTTGACA
* *
70598693 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTC-ACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
70598757 -GTTTTGACA
65 TTTTTTGACA
* * * * *
70598766 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCA-CGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
70598831 TTTTTT-AGA
65 TTTTTTGACA
* *
70598840 AACATAAATTAAAAA
1 AACAGAAATTGAAAA
70598855 AACGAAAATT
Statistics
Matches: 463, Mismatches: 52, Indels: 33
0.84 0.09 0.06
Matches are distributed among these distances:
71 37 0.08
72 4 0.01
73 176 0.38
74 36 0.08
75 174 0.38
76 36 0.08
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTGACA
Found at i:70598638 original size:148 final size:148
Alignment explanation
Indices: 70598244--70598921 Score: 785
Period size: 148 Copynumber: 4.5 Consensus size: 148
70598234 AACACAGAAA
* * * ** * *
70598244 TTGAAGAACAGAAATGGAAAACACCTC-A-GCATCTTGAGGTTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* ** * *
70598307 GCTGATTTTTTTTGA-AAGACGGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCACCT
66 GTTGA---TTTTTGACAA-ACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCT
70598371 CTCGCAATATGAGTTGA--TTT
127 CTCGCAATATGAGTTGATTTTT
* * * * * *
70598391 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
70598454 GTTGATTTTTTTGAAAAACAGAAGTTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCT
66 GTTGA--TTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCT
* *
70598519 CACAATATGAGCTGATTTTT
129 CGCAATATGAGTTGATTTTT
* *
70598539 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
70598604 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCG
66 GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
70598669 CAATATGAGTTGATTTTT
131 CAATATGAGTTGATTTTT
*
70598687 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
70598752 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCG
66 GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
70598817 CAATATGAGTTGATTTTT
131 CAATATGAGTTGATTTTT
* * *
70598835 TTAGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
1 TT-G-----------AAAAACA-G-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
70598900 CTCTCGCAATATGAGTTGATTT
52 CTCTCGCAATATGAGTTGATTT
70598922 GAAAAGCAGA
Statistics
Matches: 467, Mismatches: 45, Indels: 23
0.87 0.08 0.04
Matches are distributed among these distances:
146 66 0.14
147 60 0.13
148 237 0.51
149 2 0.00
150 37 0.08
160 6 0.01
161 1 0.00
162 58 0.12
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (148 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTT
Found at i:70598777 original size:221 final size:222
Alignment explanation
Indices: 70598244--70598921 Score: 909
Period size: 221 Copynumber: 3.0 Consensus size: 222
70598234 AACACAGAAA
* * * ** *
70598244 TTGAAGAACAGAAATGGAAAACACCTC-A-GCATCTTGAGGTTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* *
70598307 GCTGATTTTTTTTGAAAGACGGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCACCTC
66 GCTGA--TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
70598372 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAA
129 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
70598435 CTCACCTATCGCAATATGAGTTGATTTTT
194 CTCACCTATCGCAATATGAGTTGATTTTT
* *
70598464 TTGAAAAACAGAAGTTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
70598529 GCTGATTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 GCTGA-TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
70598594 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
130 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
70598659 TCACCTATCGCAATATGAGTTGATTTTT
195 TCACCTATCGCAATATGAGTTGATTTTT
* *
70598687 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * * * * *
70598752 GTTGA-GTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCT
66 GCTGATTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
70598815 CGCAATATGAGTTGATTTTTTTAGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCG
130 CGCAATATGAGTTGA--TTTTT-G--AC-----------AAACAAAAATTGAAATTACCTCAGCG
*
70598880 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
179 TGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTT
70598922 GAAAAGCAGA
Statistics
Matches: 409, Mismatches: 28, Indels: 25
0.89 0.06 0.05
Matches are distributed among these distances:
220 23 0.06
221 169 0.41
222 38 0.09
223 111 0.27
224 1 0.00
226 2 0.00
237 65 0.16
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (222 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
GCTGATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
CACCTATCGCAATATGAGTTGATTTTT
Found at i:70599059 original size:14 final size:13
Alignment explanation
Indices: 70599024--70599068 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
70599014 TTGATTTTTG
*
70599024 AAAAAAAGAAATT
1 AAAAACAGAAATT
*
70599037 AAAAGCAGAAATT
1 AAAAACAGAAATT
70599050 GAAAAACAGAAATT
1 -AAAAACAGAAATT
70599064 AAAAA
1 AAAAA
70599069 TACCTCGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.71, C:0.04, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:70599089 original size:100 final size:101
Alignment explanation
Indices: 70598852--70599141 Score: 394
Period size: 100 Copynumber: 2.9 Consensus size: 101
70598842 CATAAATTAA
70598852 AAAAAC-GAAAATTGAAAATACCTCAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCTCC-GAGGCTCAACTCACCTCTCGCAATATGAG
** * * *
70598915 TTGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
64 TTGATTTTTGAAAAAAAGAAATTGAAAAGCAAAAATTG
*
70598951 AAAAACAGAAATTGAAAATACCTCAGCGTGC-CTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCTC-CGAGGCTCAACTCACCTCTCGCAATATGAGT
*
70599015 TGATTTTTGAAAAAAAGAAATT-AAAAGCAGAAATTG
65 TGATTTTTGAAAAAAAGAAATTGAAAAGCAAAAATTG
* * *
70599051 AAAAACAGAAATTAAAAATACCTCGGCGTGCTCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCTCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
** *
70599116 GATTTTTGAAAAGCATAAATTGAAAA
66 GATTTTTGAAAAAAAGAAATTGAAAA
70599142 AACGGAAATT
Statistics
Matches: 170, Mismatches: 14, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
99 62 0.36
100 89 0.52
101 19 0.11
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCTCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAAAAGAAATTGAAAAGCAAAAATTG
Found at i:70599205 original size:90 final size:87
Alignment explanation
Indices: 70599037--70599212 Score: 255
Period size: 90 Copynumber: 2.0 Consensus size: 87
70599027 AAAAGAAATT
* * *
70599037 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCTCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTGCTCCGAGGCCCAACTCACCTC
70599102 TCGCAATATGAGTTGATTTTTG
66 TCGCAATATGAGTTGATTTTTG
* * *
70599124 AAAAGCATAAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTG-TGACCTGAGGCCCAACTCA
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCTCAGCGTGCT--CC-GAGGCCCAACTCA
70599188 CCTCTCGCAATATGAGTTGATTTTT
62 CCTCTCGCAATATGAGTTGATTTTT
70599213 TTGAAAGATA
Statistics
Matches: 79, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
87 14 0.18
88 27 0.34
89 2 0.03
90 36 0.46
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTGCTCCGAGGCCCAACTCACCTC
TCGCAATATGAGTTGATTTTTG
Found at i:70609887 original size:2 final size:2
Alignment explanation
Indices: 70609880--70609904 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
70609870 TGTACGTAAA
70609880 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
70609905 GTAATAGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:70609959 original size:25 final size:23
Alignment explanation
Indices: 70609907--70609961 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
70609897 TATATATAGT
70609907 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
70609930 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
70609955 AATAGTG
1 AATAGTG
70609962 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:70610042 original size:22 final size:22
Alignment explanation
Indices: 70610017--70610091 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
70610007 TATGAAATAG
*
70610017 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
70610039 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
70610064 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
70610086 AGATAA
1 ATATAA
70610092 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:70610061 original size:25 final size:24
Alignment explanation
Indices: 70610023--70610085 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
70610013 ATAGATATAA
** *
70610023 AAAAAATATGTACATAATATAGTGT
1 AAAAAATACATACATAATATAAT-T
70610048 AAAAAATACATACATAATATAATT
1 AAAAAATACATACATAATATAATT
70610072 AAAATATATACATA
1 AAAA-A-ATACATA
70610086 AGATAACATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (24 bp):
AAAAAATACATACATAATATAATT
Found at i:70610136 original size:25 final size:24
Alignment explanation
Indices: 70610108--70610239 Score: 110
Period size: 23 Copynumber: 5.6 Consensus size: 24
70610098 GAAAAAATAT
*
70610108 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATT-AAG
* *
70610133 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAGTATTAAG
* * *
70610156 ATATATACGTAATATAGAATTTAG
1 ATATATACATAATATAGTATTAAG
* * *
70610180 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAGTATTAAG
* *
70610202 AATATATATATAATATAATATTAAG
1 -ATATATACATAATATAGTATTAAG
*
70610227 AAATATA-ATAATA
1 ATATATACATAATA
70610240 ACAAAAAAAA
Statistics
Matches: 85, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
22 2 0.02
23 39 0.46
24 24 0.28
25 20 0.24
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (24 bp):
ATATATACATAATATAGTATTAAG
Found at i:70610136 original size:29 final size:28
Alignment explanation
Indices: 70610036--70610145 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 28
70610026 AAATATGTAC
* *
70610036 ATAATATAGT-GTAAAA-A-ATACATAC
1 ATAATATAGTATTAAAATATATACATAA
70610061 ATAATATA--ATTAAAATATATACATAA
1 ATAATATAGTATTAAAATATATACATAA
* ** *
70610087 GATAACAT-GTAGAAAAAATATATATATAA
1 -ATAATATAGTA-TTAAAATATATACATAA
70610116 ATAATATAGTATTAAAGATATATACATAA
1 ATAATATAGTATTAAA-ATATATACATAA
70610145 A
1 A
70610146 ATAGTATAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
24 5 0.08
25 9 0.14
26 7 0.11
27 6 0.09
28 10 0.15
29 29 0.44
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (28 bp):
ATAATATAGTATTAAAATATATACATAA
Found at i:70610148 original size:27 final size:27
Alignment explanation
Indices: 70610036--70610169 Score: 81
Period size: 29 Copynumber: 5.1 Consensus size: 27
70610026 AAATATGTAC
*
70610036 ATAATATAGT-GTAAAA-A-ATACATA
1 ATAATATAGTATTAAAATATATACATA
70610060 CATAATATA--ATTAAAATATATACATAA
1 -ATAATATAGTATTAAAATATATACAT-A
* ** *
70610087 GATAACAT-GTAGAAAAAATATATATATAA
1 -ATAATATAGTA-TTAAAATATATACAT-A
70610116 ATAATATAGTATTAAAGATATATACAT-
1 ATAATATAGTATTAAA-ATATATACATA
* *
70610143 A-AA-ATAGTA-TAATATATATACGTA
1 ATAATATAGTATTAAAATATATACATA
70610167 ATA
1 ATA
70610170 TAGAATTTAG
Statistics
Matches: 86, Mismatches: 12, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
23 9 0.10
24 9 0.10
25 16 0.19
26 8 0.09
27 8 0.09
28 10 0.12
29 26 0.30
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.32
Consensus pattern (27 bp):
ATAATATAGTATTAAAATATATACATA
Found at i:70610215 original size:24 final size:23
Alignment explanation
Indices: 70610188--70610239 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
70610178 AGAATATACC
*
70610188 TAATATATTA-AAAGAATATATATA
1 TAATATAATATAAAGAA-ATATA-A
*
70610212 TAATATAATATTAAGAAATATAA
1 TAATATAATATAAAGAAATATAA
70610235 TAATA
1 TAATA
70610240 ACAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
TAATATAATATAAAGAAATATAA
Found at i:70610561 original size:16 final size:16
Alignment explanation
Indices: 70610523--70610561 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
70610513 TCTCCAAAAA
*
70610523 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
70610539 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
70610555 AATAACT
1 AAAAACT
70610562 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:70615944 original size:18 final size:18
Alignment explanation
Indices: 70615921--70615957 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
70615911 CAAACATAGA
* *
70615921 TTTAAATTAAGTTCATGT
1 TTTAAAGTAAATTCATGT
70615939 TTTAAAGTAAATTCATGT
1 TTTAAAGTAAATTCATGT
70615957 T
1 T
70615958 ATACTGTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.49
Consensus pattern (18 bp):
TTTAAAGTAAATTCATGT
Found at i:70620214 original size:15 final size:15
Alignment explanation
Indices: 70620194--70620245 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
70620184 ACTACAAAAC
70620194 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
70620209 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
70620228 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
70620243 ATT
1 ATT
70620246 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:70620338 original size:18 final size:18
Alignment explanation
Indices: 70620300--70620335 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
70620290 TTATTATTTT
*
70620300 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
70620318 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
70620336 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:70620366 original size:22 final size:22
Alignment explanation
Indices: 70620326--70620381 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
70620316 AATAAAATTT
*
70620326 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
70620346 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
70620368 TATTAATAATTTAT
1 AAATAATAAATTAT
70620382 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:70622669 original size:17 final size:17
Alignment explanation
Indices: 70622647--70622681 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
70622637 ATACATGATA
70622647 ATATATAAACATATACT
1 ATATATAAACATATACT
*
70622664 ATATATAAATATATACT
1 ATATATAAACATATACT
70622681 A
1 A
70622682 GAAATGATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (17 bp):
ATATATAAACATATACT
Found at i:70623081 original size:12 final size:12
Alignment explanation
Indices: 70623060--70623090 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
70623050 AATACTGATA
*
70623060 AATAAAAACAAT
1 AATAATAACAAT
70623072 AATAATAACAAT
1 AATAATAACAAT
70623084 AATAATA
1 AATAATA
70623091 GATAAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (12 bp):
AATAATAACAAT
Found at i:70623638 original size:17 final size:18
Alignment explanation
Indices: 70623602--70623641 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
70623592 CAGGGCCAGT
*
70623602 CACCGGCCGATCGTCGGC
1 CACCGGCCGATCGCCGGC
*
70623620 CACCGTCCG-TCGCCGGC
1 CACCGGCCGATCGCCGGC
70623637 CACCG
1 CACCG
70623642 CGGAAGTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.10, C:0.50, G:0.30, T:0.10
Consensus pattern (18 bp):
CACCGGCCGATCGCCGGC
Found at i:70623679 original size:12 final size:12
Alignment explanation
Indices: 70623662--70623688 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
70623652 AAAGGTATTG
70623662 TTTTTTTTTAGT
1 TTTTTTTTTAGT
70623674 TTTTTTTTTAGT
1 TTTTTTTTTAGT
70623686 TTT
1 TTT
70623689 AAAATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTAGT
Found at i:70624620 original size:3 final size:3
Alignment explanation
Indices: 70624606--70624662 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
70624596 AAATAGATAT
* *
70624606 TTA TTA TAA TTA TTA -TA GTT- TTA -TA TTA -AA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
70624648 TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
70624663 AAATGAAGAC
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
2 7 0.16
3 37 0.82
4 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:70624799 original size:16 final size:16
Alignment explanation
Indices: 70624778--70624817 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
70624768 ATGAATTAAA
*
70624778 TATTATTATATTATAT
1 TATTATTATAATATAT
*
70624794 TATTATTATAATGTAT
1 TATTATTATAATATAT
70624810 TATTATTA
1 TATTATTA
70624818 AAACTATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (16 bp):
TATTATTATAATATAT
Found at i:70626372 original size:11 final size:12
Alignment explanation
Indices: 70626342--70626375 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
70626332 GTATGTTTAC
70626342 TTATTATATAAG
1 TTATTATATAAG
70626354 TATATTAT-TAAG
1 T-TATTATATAAG
70626366 TTATTATATA
1 TTATTATATA
70626376 TATATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (12 bp):
TTATTATATAAG
Found at i:70626395 original size:27 final size:27
Alignment explanation
Indices: 70626342--70626419 Score: 110
Period size: 27 Copynumber: 3.0 Consensus size: 27
70626332 GTATGTTTAC
*
70626342 TTATTATATA-AGTATAT-TA-TTAA-G
1 TTATTATATATA-TATATATAGTAAATG
70626366 TTATTATATATATATATATAGTAAATG
1 TTATTATATATATATATATAGTAAATG
70626393 TTATTATATATATATATATAGTAAATG
1 TTATTATATATATATATATAGTAAATG
70626420 AAATAAAAGA
Statistics
Matches: 49, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
24 15 0.31
25 3 0.06
26 3 0.06
27 28 0.57
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.49
Consensus pattern (27 bp):
TTATTATATATATATATATAGTAAATG
Found at i:70626490 original size:19 final size:18
Alignment explanation
Indices: 70626468--70626509 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
70626458 GAATAGCAAT
*
70626468 AGGGAAAAGAAGGAAGAAA
1 AGGGAAAAGAA-AAAGAAA
*
70626487 AGGGGAAAGAAAAAGAAA
1 AGGGAAAAGAAAAAGAAA
70626505 AGGGA
1 AGGGA
70626510 GAATTAGGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (18 bp):
AGGGAAAAGAAAAAGAAA
Found at i:70627782 original size:18 final size:17
Alignment explanation
Indices: 70627749--70627880 Score: 95
Period size: 18 Copynumber: 7.4 Consensus size: 17
70627739 ATTTGACCGC
*
70627749 TACTAAATAATCGACTGT
1 TACTGAATAAT-GACTGT
70627767 TACTGAATCAATGACTGT
1 TACTGAAT-AATGACTGT
**
70627785 TACTGAATAACTGACTAC
1 TACTGAATAA-TGACTGT
*
70627803 TACTGAATAATTGACTGA
1 TACTGAATAA-TGACTGT
* * *
70627821 TATTGAATAAACGACCGT
1 TACTGAAT-AATGACTGT
* * *
70627839 TACTGAATAACTAATTAT
1 TACTGAATAA-TGACTGT
*
70627857 TACTG-ATGATTGACTGT
1 TACTGAAT-AATGACTGT
70627874 TACTGAA
1 TACTGAA
70627881 CAATAAAGAT
Statistics
Matches: 88, Mismatches: 20, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
17 15 0.17
18 68 0.77
19 5 0.06
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.33
Consensus pattern (17 bp):
TACTGAATAATGACTGT
Found at i:70627806 original size:54 final size:53
Alignment explanation
Indices: 70627748--70627884 Score: 150
Period size: 54 Copynumber: 2.6 Consensus size: 53
70627738 AATTTGACCG
* * *
70627748 CTACTAAATAATCGACTGTTACTGAATCAATGACTGTTACTGAATAACTGACTA
1 CTACT-AATAATTGACTGTTACTGAATCAATGACCGTTACTGAATAACTAACTA
* * * * *
70627802 CTACTGAATAATTGACTGATATTGAATAAACGACCGTTACTGAATAACTAATTA
1 CTACT-AATAATTGACTGTTACTGAATCAATGACCGTTACTGAATAACTAACTA
* * *
70627856 TTACTGATGATTGACTGTTACTGAA-CAAT
1 CTACTAATAATTGACTGTTACTGAATCAAT
70627885 AAAGATCAAT
Statistics
Matches: 67, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
52 2 0.03
53 16 0.24
54 49 0.73
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (53 bp):
CTACTAATAATTGACTGTTACTGAATCAATGACCGTTACTGAATAACTAACTA
Found at i:70628917 original size:19 final size:20
Alignment explanation
Indices: 70628876--70628921 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
70628866 CCACATGGGT
70628876 GTGTTATGGAACACACGGGC
1 GTGTTATGGAACACACGGGC
70628896 GTGTTATGGAACACAC-GGC
1 GTGTTATGGAACACACGGGC
70628915 GTGTTAT
1 GTGTTAT
70628922 CTAGACCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (20 bp):
GTGTTATGGAACACACGGGC
Found at i:70633320 original size:11 final size:12
Alignment explanation
Indices: 70633290--70633323 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
70633280 GTATGTTTAC
70633290 TTATTATATAAG
1 TTATTATATAAG
70633302 TATATTAT-TAAG
1 T-TATTATATAAG
70633314 TTATTATATA
1 TTATTATATA
70633324 TATATATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (12 bp):
TTATTATATAAG
Found at i:70634094 original size:17 final size:19
Alignment explanation
Indices: 70634055--70634094 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
70634045 GTATTTAAAG
70634055 TTAAATATTTGAATAGGAA
1 TTAAATATTTGAATAGGAA
*
70634074 -TAAATA-TTG-ATTGGAA
1 TTAAATATTTGAATAGGAA
70634090 TTAAA
1 TTAAA
70634095 GAGTGAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
16 6 0.32
17 7 0.37
18 6 0.32
ACGTcount: A:0.47, C:0.00, G:0.15, T:0.38
Consensus pattern (19 bp):
TTAAATATTTGAATAGGAA
Found at i:70634734 original size:18 final size:18
Alignment explanation
Indices: 70634704--70634824 Score: 120
Period size: 18 Copynumber: 6.8 Consensus size: 18
70634694 TAAATAAAGG
*
70634704 TACTGAA-AATTGACCGC
1 TACTGAATAATTGACTGC
*
70634721 TACTGAATAATTGACTGT
1 TACTGAATAATTGACTGC
*
70634739 TACTGAATCAA-TGACTGT
1 TACTGAAT-AATTGACTGC
* *
70634757 TACTGAATAACTGACTAC
1 TACTGAATAATTGACTGC
*
70634775 TACTGAATAATTGACTGA
1 TACTGAATAATTGACTGC
* ** *
70634793 TATTGAATAAACGACTGT
1 TACTGAATAATTGACTGC
*
70634811 TACTAAATAATTGA
1 TACTGAATAATTGA
70634825 TTATTACTGA
Statistics
Matches: 86, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
17 9 0.10
18 75 0.87
19 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (18 bp):
TACTGAATAATTGACTGC
Found at i:70634763 original size:36 final size:36
Alignment explanation
Indices: 70634704--70634852 Score: 153
Period size: 36 Copynumber: 4.2 Consensus size: 36
70634694 TAAATAAAGG
* * *
70634704 TACTGAA-AATTGACCGCTACTGAATAATTGACTGT
1 TACTGAATAATTGACTGTTACTGAATAACTGACTGT
**
70634739 TACTGAATCAA-TGACTGTTACTGAATAACTGACTAC
1 TACTGAAT-AATTGACTGTTACTGAATAACTGACTGT
* *
70634775 TACTGAATAATTGACTGATATTGAATAAAC-GACTGT
1 TACTGAATAATTGACTGTTACTGAAT-AACTGACTGT
* * * *
70634811 TACTAAATAATTGATTATTACTG-ATGACTGACTGT
1 TACTGAATAATTGACTGTTACTGAATAACTGACTGT
70634846 TACTGAA
1 TACTGAA
70634853 CAATAAAGAT
Statistics
Matches: 93, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
34 2 0.02
35 23 0.25
36 63 0.68
37 5 0.05
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (36 bp):
TACTGAATAATTGACTGTTACTGAATAACTGACTGT
Found at i:70634778 original size:54 final size:54
Alignment explanation
Indices: 70634720--70634856 Score: 170
Period size: 54 Copynumber: 2.6 Consensus size: 54
70634710 AAATTGACCG
*
70634720 CTACTGAATAATTGACTGTTACTGAATCAATGACTGTTACTGAATAACTGACTA
1 CTACTGAATAATTGACTGTTACTGAATCAATGACTGTTACTAAATAACTGACTA
* * * * * *
70634774 CTACTGAATAATTGACTGATATTGAATAAACGACTGTTACTAAATAATTGATTA
1 CTACTGAATAATTGACTGTTACTGAATCAATGACTGTTACTAAATAACTGACTA
* * *
70634828 TTACTG-ATGACTGACTGTTACTGAA-CAAT
1 CTACTGAATAATTGACTGTTACTGAATCAAT
70634857 AAAGATCAAT
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
52 2 0.03
53 15 0.22
54 52 0.75
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (54 bp):
CTACTGAATAATTGACTGTTACTGAATCAATGACTGTTACTAAATAACTGACTA
Found at i:70636183 original size:21 final size:21
Alignment explanation
Indices: 70636159--70636200 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
70636149 TATGTGTCAT
*
70636159 ATATTAGACACCTCGTGTGTC
1 ATATCAGACACCTCGTGTGTC
*
70636180 ATATCAGGCACCTCGTGTGTC
1 ATATCAGACACCTCGTGTGTC
70636201 GCTTCAGGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (21 bp):
ATATCAGACACCTCGTGTGTC
Found at i:70641877 original size:52 final size:48
Alignment explanation
Indices: 70641858--70642060 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
70641848 TGACAAGTGG
* *
70641858 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
70641904 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
70641956 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
70642002 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
70642048 AAAGTGATAAGTG
1 AAAGTGATAAGTG
70642061 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:70641912 original size:98 final size:98
Alignment explanation
Indices: 70641792--70642060 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
70641782 TTTGAGTACT
*
70641792 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
70641857 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
70641890 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
70641955 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
70641988 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
70642053 GATAAGTG
65 GAAAAGTG
70642061 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:70642068 original size:37 final size:37
Alignment explanation
Indices: 70642024--70642169 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
70642014 GATAGCTTTA
*
70642024 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
70642061 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
70642098 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
70642135 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
70642170 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:70643485 original size:49 final size:49
Alignment explanation
Indices: 70643424--70643567 Score: 225
Period size: 49 Copynumber: 2.9 Consensus size: 49
70643414 ATGTGAACAT
* *
70643424 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
70643474 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
70643523 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
70643568 AGAAAACGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
49 84 0.95
50 4 0.05
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.33
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:70646778 original size:52 final size:48
Alignment explanation
Indices: 70646759--70646961 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
70646749 TGACAAGTGG
* *
70646759 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
70646805 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
70646857 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
70646903 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
70646949 AAAGTGATAAGTG
1 AAAGTGATAAGTG
70646962 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:70646813 original size:98 final size:98
Alignment explanation
Indices: 70646693--70646961 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
70646683 TTTGAGTACT
*
70646693 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
70646758 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
70646791 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
70646856 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
70646889 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
70646954 GATAAGTG
65 GAAAAGTG
70646962 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:70646969 original size:37 final size:37
Alignment explanation
Indices: 70646925--70647070 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
70646915 GATAGCTTTA
*
70646925 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
70646962 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
70646999 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
70647036 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
70647071 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:70650050 original size:13 final size:13
Alignment explanation
Indices: 70650034--70650059 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70650024 TTCGTTAAAA
70650034 AAAATTAAAATAC
1 AAAATTAAAATAC
70650047 AAAATTAAAATAC
1 AAAATTAAAATAC
70650060 TCTTAGATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAATTAAAATAC
Found at i:70655083 original size:41 final size:41
Alignment explanation
Indices: 70655027--70655307 Score: 357
Period size: 41 Copynumber: 6.9 Consensus size: 41
70655017 CGTTTGTCTG
* * * **
70655027 AAACGCCACTAAAAACTAAACTATAGCGGCGTTTTTGGCCA
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATCCA
* * **
70655068 AAACGCCACTAAAAACTGGTCAATAGCGGTGTTTTTCGCC-
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATCCA
* * * *
70655108 AAACGCCACTAAAAGCTTATCAATAGCGGCGTTTTAATCCC
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATCCA
* *
70655149 AAACGCCACTAAAAACTGATCAATTGCGGCGTTTTTATCCC
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATCCA
* * *
70655190 AAACGCCACTAAAAACTGATCAATTGTGGCGTTTTTCTCCA
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATCCA
* * *
70655231 AAACGCCATTAAAAACTGATCAATTGTGGCGTTTTTATCCA
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATCCA
*
70655272 AAACGCCACTAAACACTGATCAATAGCGGCGTTTTT
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTT
70655308 GGTCCAAACG
Statistics
Matches: 213, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 33 0.15
41 180 0.85
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (41 bp):
AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATCCA
Found at i:70655648 original size:21 final size:21
Alignment explanation
Indices: 70655622--70655671 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
70655612 ACCCTTAAGT
* *
70655622 CTTAAACATTAAACCCTAAAC
1 CTTAAACATTAAAACATAAAC
**
70655643 CTTAAATTTTAAAACATAAAC
1 CTTAAACATTAAAACATAAAC
*
70655664 CATAAACA
1 CTTAAACA
70655672 CTAATCCATA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (21 bp):
CTTAAACATTAAAACATAAAC
Found at i:70655894 original size:38 final size:42
Alignment explanation
Indices: 70655847--70655932 Score: 108
Period size: 41 Copynumber: 2.1 Consensus size: 42
70655837 TTTAAAGCCT
*
70655847 ATGGTTTA-G-GGTTCAATGGTAGAATATAT-T-TTAAGTTC
1 ATGGTTTAGGCGGTTCAATGGTAGAATATATGTATTAAGTTA
* *
70655885 ATGGTTTAGGTCGGTTCAATGGTATAGTATATGTATTAAGTTA
1 ATGGTTTAGG-CGGTTCAATGGTAGAATATATGTATTAAGTTA
70655928 ATGGT
1 ATGGT
70655933 ATGGGCCGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
38 8 0.20
39 1 0.03
41 18 0.45
42 1 0.03
43 12 0.30
ACGTcount: A:0.28, C:0.05, G:0.26, T:0.42
Consensus pattern (42 bp):
ATGGTTTAGGCGGTTCAATGGTAGAATATATGTATTAAGTTA
Found at i:70656220 original size:13 final size:13
Alignment explanation
Indices: 70656202--70656240 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
70656192 AGATAATTTA
70656202 AAATACTTTAATT
1 AAATACTTTAATT
70656215 AAATACTTTAATT
1 AAATACTTTAATT
*
70656228 AAGTACTTTAATT
1 AAATACTTTAATT
70656241 TTAATATGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.46
Consensus pattern (13 bp):
AAATACTTTAATT
Found at i:70657161 original size:40 final size:41
Alignment explanation
Indices: 70657106--70657188 Score: 98
Period size: 40 Copynumber: 2.0 Consensus size: 41
70657096 GCGTTTTTAC
* * *
70657106 AAAAACGCCACTAAAAA-TAGAGAATTAGTGGCGCTTTCGTA
1 AAAAACGCCACTAAAAACT-GAAAATTAGCGACGCTTTCGTA
* *
70657147 AAAAACGCC-GTAAAAACTGAAAATTAGCGACGCTTTTGTA
1 AAAAACGCCACTAAAAACTGAAAATTAGCGACGCTTTCGTA
70657187 AA
1 AA
70657189 GCACCACTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
40 26 0.72
41 10 0.28
ACGTcount: A:0.43, C:0.17, G:0.18, T:0.22
Consensus pattern (41 bp):
AAAAACGCCACTAAAAACTGAAAATTAGCGACGCTTTCGTA
Found at i:70661446 original size:9 final size:9
Alignment explanation
Indices: 70661423--70661550 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
70661413 ATTGATCATT
*
70661423 ACTTAAATA
1 ACTTACATA
*
70661432 AATTACATA
1 ACTTACATA
70661441 ACTTACATA
1 ACTTACATA
* *
70661450 ACTCATATA
1 ACTTACATA
70661459 ACTTACATA
1 ACTTACATA
*
70661468 ATTTACATAACA
1 ACTTACAT---A
70661480 ACTTACATA
1 ACTTACATA
*
70661489 ACTCACATA
1 ACTTACATA
70661498 ACTTACATA
1 ACTTACATA
*
70661507 ATTTACATA
1 ACTTACATA
*
70661516 ACTCACATA
1 ACTTACATA
*
70661525 ACGTACATAACA
1 ACTTACAT---A
70661537 ACTTACATA
1 ACTTACATA
70661546 ACTTA
1 ACTTA
70661551 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 80 0.83
12 16 0.17
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:70661492 original size:39 final size:39
Alignment explanation
Indices: 70661440--70661517 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
70661430 TAAATTACAT
*
70661440 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
70661479 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
70661518 TCACATAACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:70661517 original size:57 final size:57
Alignment explanation
Indices: 70661436--70661548 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 57
70661426 TAAATAAATT
* * **
70661436 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
70661493 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
70661549 TAACTAATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:70665466 original size:113 final size:113
Alignment explanation
Indices: 70665268--70665493 Score: 425
Period size: 113 Copynumber: 2.0 Consensus size: 113
70665258 ACTTGTTTGA
*
70665268 AATGGGTAATGGAAGTAGAGATGACATCGTCAAAAGATCAGAAACATTACCTTTTCTAGAACAAA
1 AATGGGTAATGGAAGTAGAGATGACATCGTCAAAAGATCAGAAACATTACCTTTTCCAGAACAAA
70665333 ACTTAAATGAAAATATCCCTAGTACTAATACACAACATCAATGGGTTC
66 ACTTAAATGAAAATATCCCTAGTACTAATACACAACATCAATGGGTTC
*
70665381 AATGGGTAATGGAAGTAGAGATGACATCGTCGAAAGATCAGAAACATTACCTTTTCCAGAACAAA
1 AATGGGTAATGGAAGTAGAGATGACATCGTCAAAAGATCAGAAACATTACCTTTTCCAGAACAAA
*
70665446 ACTTAGATGAAAATATCCCTAGTACTAATACACAACATCAATGGGTTC
66 ACTTAAATGAAAATATCCCTAGTACTAATACACAACATCAATGGGTTC
70665494 GACATGATGT
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 110 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (113 bp):
AATGGGTAATGGAAGTAGAGATGACATCGTCAAAAGATCAGAAACATTACCTTTTCCAGAACAAA
ACTTAAATGAAAATATCCCTAGTACTAATACACAACATCAATGGGTTC
Found at i:70667277 original size:21 final size:21
Alignment explanation
Indices: 70667244--70667294 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
70667234 ACAACTTAGA
*
70667244 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
70667265 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
70667286 GCAGAGGCA
1 GCAGAGGCA
70667295 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:70667596 original size:31 final size:31
Alignment explanation
Indices: 70667550--70667616 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
70667540 TGGTTGTATT
* *
70667550 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
70667581 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
70667612 TTTTA
1 TTTTA
70667617 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:70667716 original size:43 final size:42
Alignment explanation
Indices: 70667694--70667810 Score: 189
Period size: 43 Copynumber: 2.7 Consensus size: 42
70667684 GAAAAAGCGT
70667694 CGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGC
1 CGCTAAAAGCCTTGACCTTTAGCGGCG-TTTTCCCACAAACGC
*
70667737 CGCTAAAAGCCTTGACCTTTAGCGGCGCTTCTCCCACAAACGC
1 CGCTAAAAGCCTTGACCTTTAGCGGCG-TTTTCCCACAAACGC
* *
70667780 CGCTAAAAGCCTTGACTTTTAACGGCGTTTT
1 CGCTAAAAGCCTTGACCTTTAGCGGCGTTTT
70667811 TTTTCAATAA
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
42 3 0.04
43 67 0.96
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (42 bp):
CGCTAAAAGCCTTGACCTTTAGCGGCGTTTTCCCACAAACGC
Found at i:70669254 original size:3 final size:3
Alignment explanation
Indices: 70669248--70669309 Score: 53
Period size: 3 Copynumber: 22.0 Consensus size: 3
70669238 CCTGGGTAGT
* *
70669248 AGA AGA AGA AG- AGA AAA AGA AGA ATA AG- AGA A-A A-A ATGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A-GA AGA
*
70669290 AGA AGA GGA A-A AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA
70669310 GAAAATGGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
2 10 0.21
3 36 0.75
4 2 0.04
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:70669270 original size:17 final size:17
Alignment explanation
Indices: 70669248--70669309 Score: 88
Period size: 17 Copynumber: 3.5 Consensus size: 17
70669238 CCTGGGTAGT
70669248 AGAAGAAGAAGAGAAAA
1 AGAAGAAGAAGAGAAAA
*
70669265 AGAAGAATAAGAGAAAAA
1 AGAAGAAGAAGAG-AAAA
*
70669283 ATGAAGAAGAAGAGGAAA
1 A-GAAGAAGAAGAGAAAA
70669301 AGAAGAAGA
1 AGAAGAAGA
70669310 GAAAATGGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
17 20 0.50
18 9 0.22
19 11 0.28
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (17 bp):
AGAAGAAGAAGAGAAAA
Found at i:70670394 original size:21 final size:22
Alignment explanation
Indices: 70670368--70670422 Score: 94
Period size: 23 Copynumber: 2.5 Consensus size: 22
70670358 ACGTGGCAAG
70670368 TTAACTGGCCAC-ATCAGCTAA
1 TTAACTGGCCACGATCAGCTAA
70670389 TTAACTGGCCACGTATCAGCTAA
1 TTAACTGGCCACG-ATCAGCTAA
70670412 TTAACTGGCCA
1 TTAACTGGCCA
70670423 TGTCAGTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 12 0.38
23 20 0.62
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (22 bp):
TTAACTGGCCACGATCAGCTAA
Done.