Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 217 of 284
Found at i:71967996 original size:93 final size:93
Alignment explanation
Indices: 71967835--71968005 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
71967825 GGATGGTTGA
* * *
71967835 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAAT
71967900 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* ** *
71967928 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAAT
71967993 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71968006 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAAT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:71968048 original size:48 final size:48
Alignment explanation
Indices: 71967932--71968067 Score: 222
Period size: 48 Copynumber: 2.9 Consensus size: 48
71967922 AACTAGGCAT
**
71967932 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT-GG-ATGTGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGCGGGTGAACGC
*
71967978 CCGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGGGCGGGTGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGCGGGTGAACGC
*
71968026 CCGAGCTCGTTGAGTTGTGTCCGAGTTCACTTATGGGCGGGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGCGGGT
71968068 TACATGGTAG
Statistics
Matches: 83, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 33 0.40
47 2 0.02
48 48 0.58
ACGTcount: A:0.17, C:0.22, G:0.33, T:0.28
Consensus pattern (48 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGCGGGTGAACGC
Found at i:71971005 original size:15 final size:15
Alignment explanation
Indices: 71970985--71971040 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
71970975 GTATCTTGGG
71970985 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
71971000 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
71971015 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
71971030 TTTCTTTATTC
1 TTTCTTTATTC
71971041 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:71972605 original size:50 final size:50
Alignment explanation
Indices: 71972543--71972643 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
71972533 ATCTTCAACT
*
71972543 CCATGGCTGAATATAGCAAGGAGAAACCATGGCTAGGGTTTTCAAGCTTC
1 CCATGGCCGAATATAGCAAGGAGAAACCATGGCTAGGGTTTTCAAGCTTC
71972593 CCATGGCCGAATATAGCAAGGAGAAACCATGGCTAGGGTTTTCAAGCTTC
1 CCATGGCCGAATATAGCAAGGAGAAACCATGGCTAGGGTTTTCAAGCTTC
71972643 C
1 C
71972644 AAGCTCAATT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.23
Consensus pattern (50 bp):
CCATGGCCGAATATAGCAAGGAGAAACCATGGCTAGGGTTTTCAAGCTTC
Found at i:71973538 original size:46 final size:46
Alignment explanation
Indices: 71973488--71974399 Score: 1663
Period size: 46 Copynumber: 19.8 Consensus size: 46
71973478 TGGTTGAGCA
71973488 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71973534 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71973580 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71973626 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71973672 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71973718 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71973764 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71973810 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71973856 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71973902 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71973948 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71973994 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71974040 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71974086 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71974132 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71974178 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
71974224 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
71974270 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ATG
* *
71974315 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCA-AATG
* * *
71974363 CCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71974400 GCGGGTTACA
Statistics
Matches: 848, Mismatches: 8, Indels: 20
0.97 0.01 0.02
Matches are distributed among these distances:
42 1 0.00
43 7 0.01
44 1 0.00
45 2 0.00
46 799 0.94
47 27 0.03
48 2 0.00
49 2 0.00
50 6 0.01
51 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:71977266 original size:16 final size:17
Alignment explanation
Indices: 71977233--71977267 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
71977223 AAATGCCAGA
*
71977233 AAAGTTTTGATTAGTTG
1 AAAGTTTTGATTAATTG
71977250 AAAGTTTT-ATTAATTG
1 AAAGTTTTGATTAATTG
71977266 AA
1 AA
71977268 GCTCCGGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (17 bp):
AAAGTTTTGATTAATTG
Found at i:71998624 original size:35 final size:35
Alignment explanation
Indices: 71998550--71998729 Score: 182
Period size: 35 Copynumber: 5.1 Consensus size: 35
71998540 TACTTACTTG
*
71998550 TATGGCCAAATACT-CAAGGTTCATTATATCATCACA
1 TATGGCCAAATA-TACAA-GTTCAATATATCATCACA
* *
71998586 TATGGCCAAATATACAAGTACAATATATCATCATA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * *
71998621 TATGACCGAATATACAAGCTCAATAAAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * * * *
71998656 TGTAGTCAAATATTCAATTTTAATATAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* *
71998691 TGTGCCCAAATATACAAGTTCAATATATCATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
71998726 TATG
1 TATG
71998730 TACATACCTA
Statistics
Matches: 115, Mismatches: 28, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
35 100 0.87
36 15 0.13
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.29
Consensus pattern (35 bp):
TATGGCCAAATATACAAGTTCAATATATCATCACA
Found at i:72004749 original size:41 final size:42
Alignment explanation
Indices: 72004704--72004783 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
72004694 GCGAAACTGT
72004704 AATAGCTTCAGCTATG-AAAGGCACTTAGTGTGCAAGATTAC
1 AATAGCTTCAGCTATGCAAAGGCACTTAGTGTGCAAGATTAC
* *** *
72004745 AATAGCTTCGGCTATGCTTTGGCACTTAGTGTGCGAGAT
1 AATAGCTTCAGCTATGCAAAGGCACTTAGTGTGCAAGAT
72004784 ACCGAGTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
41 15 0.45
42 18 0.55
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
AATAGCTTCAGCTATGCAAAGGCACTTAGTGTGCAAGATTAC
Found at i:72010931 original size:33 final size:33
Alignment explanation
Indices: 72010889--72010991 Score: 179
Period size: 33 Copynumber: 3.1 Consensus size: 33
72010879 GCCGCTAAAG
72010889 GTTTTTTATATAAACGCCGCAAACTTTAGCGGC
1 GTTTTTTATATAAACGCCGCAAACTTTAGCGGC
*
72010922 GTTTTTTATATAAACGCCGCAAACTTTAGCGAC
1 GTTTTTTATATAAACGCCGCAAACTTTAGCGGC
* *
72010955 GTTTTTTAGATAAACGCCGCAAACTTTAGCGGT
1 GTTTTTTATATAAACGCCGCAAACTTTAGCGGC
72010988 GTTT
1 GTTT
72010992 CCTATAGCGG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 66 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (33 bp):
GTTTTTTATATAAACGCCGCAAACTTTAGCGGC
Found at i:72011749 original size:42 final size:42
Alignment explanation
Indices: 72011692--72011838 Score: 134
Period size: 42 Copynumber: 3.5 Consensus size: 42
72011682 GATTTGAGCT
* * *
72011692 TTACGTGTAAGACCATGTCTAGGATATTGGCGTCGTATCTGA
1 TTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATCTAA
* * *
72011734 TTACGTATAAGACCATGTCTGGGACATTGGCATCGTATTTAA
1 TTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATCTAA
* * ** ** *
72011776 TTTCGTGTAAGACCCTGTCGGGGACAGAGGCATCGGCA-CTGAA
1 TTACGTGTAAGACCATGTCTAGGACATTGGCATC-GTATCT-AA
* *
72011819 TTACATGTAAGACCACGTCT
1 TTACGTGTAAGACCATGTCT
72011839 GAGACGTAGG
Statistics
Matches: 84, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
42 65 0.77
43 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATCTAA
Found at i:72011936 original size:15 final size:16
Alignment explanation
Indices: 72011909--72011938 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72011899 AGAGTACGAC
72011909 ATATGAGAATGTATAT
1 ATATGAGAATGTATAT
72011925 ATATGA-AATGTATA
1 ATATGAGAATGTATA
72011939 ATCTTTACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.37
Consensus pattern (16 bp):
ATATGAGAATGTATAT
Found at i:72028458 original size:27 final size:26
Alignment explanation
Indices: 72028417--72028527 Score: 114
Period size: 27 Copynumber: 4.2 Consensus size: 26
72028407 AGGAAGCGTC
* *
72028417 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCA-AATTATCTGTT
* *
72028444 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCAAAT-TATCTGTT
* *
72028471 CTGGTAGCTTTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCA-AATTATCTGTT
* * *
72028498 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCAAATTATCTGTT
72028524 CTGG
1 CTGG
72028528 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 16 0.23
27 51 0.74
28 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCAAATTATCTGTT
Found at i:72028509 original size:54 final size:53
Alignment explanation
Indices: 72028417--72028536 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 53
72028407 AGGAAGCGTC
* * *
72028417 CTGGTGGCTATGCCATAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTAGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACAT-TATCTGTT
* * * *
72028471 CTGGTAGCTTTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTAGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATTATCTGTT
* *
72028524 CTGGCAGCCATGC
1 CTGGTAGCTATGC
72028537 TGCATATTTT
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
53 18 0.32
54 38 0.68
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (53 bp):
CTGGTAGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATTATCTGTT
Found at i:72033251 original size:29 final size:29
Alignment explanation
Indices: 72033218--72033277 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
72033208 TAACGGAGTT
*
72033218 TGTAGGGAAATGTCTGACATGCCAACAAG
1 TGTAGGGAAACGTCTGACATGCCAACAAG
* *
72033247 TGTAGGGAAACGTGTGACATGCCAGCAAG
1 TGTAGGGAAACGTCTGACATGCCAACAAG
72033276 TG
1 TG
72033278 AAAGCTGAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.17, G:0.32, T:0.20
Consensus pattern (29 bp):
TGTAGGGAAACGTCTGACATGCCAACAAG
Found at i:72036370 original size:27 final size:26
Alignment explanation
Indices: 72036330--72036403 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 26
72036320 AGGAAGCGTC
*
72036330 CTAGTGGCTTTGCCATAATTATCTAAT
1 CTAGTGGCTCTGCCA-AATTATCTAAT
* *
72036357 CTAGTGGCTCTGCCACATATATCTATT
1 CTAGTGGCTCTGCCAAAT-TATCTAAT
* *
72036384 CTGGTAGCTCTGCCACAATT
1 CTAGTGGCTCTGCCA-AATT
72036404 TTCTGTTCTG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.05
27 35 0.90
28 2 0.05
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.36
Consensus pattern (26 bp):
CTAGTGGCTCTGCCAAATTATCTAAT
Found at i:72036412 original size:27 final size:25
Alignment explanation
Indices: 72036363--72036440 Score: 93
Period size: 27 Copynumber: 3.0 Consensus size: 25
72036353 TAATCTAGTG
*
72036363 GCTCTGCCACATATATCTATTCTGGT
1 GCTCTGCCACAT-TATCTGTTCTGGT
*
72036389 AGCTCTGCCACAATTTTCTGTTCTGGT
1 -GCTCTGCCAC-ATTATCTGTTCTGGT
*
72036416 GACTCTGTCACATTATCTGTTCTGG
1 G-CTCTGCCACATTATCTGTTCTGG
72036441 CAGCCATGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
26 14 0.31
27 29 0.64
28 2 0.04
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.40
Consensus pattern (25 bp):
GCTCTGCCACATTATCTGTTCTGGT
Found at i:72050081 original size:36 final size:36
Alignment explanation
Indices: 72050034--72050107 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
72050024 TAGAGATCGC
72050034 TCCGCTAGCTGAAGTGTCATAATTGTAGGTCTTACT
1 TCCGCTAGCTGAAGTGTCATAATTGTAGGTCTTACT
72050070 TCCGCTAGCTGAAGTGTCATAATTGTAGGTCTTACT
1 TCCGCTAGCTGAAGTGTCATAATTGTAGGTCTTACT
72050106 TC
1 TC
72050108 ACCTATCCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (36 bp):
TCCGCTAGCTGAAGTGTCATAATTGTAGGTCTTACT
Found at i:72054994 original size:27 final size:26
Alignment explanation
Indices: 72054950--72055104 Score: 136
Period size: 27 Copynumber: 5.8 Consensus size: 26
72054940 TTAGTTTCCC
*
72054950 AAATTACTGAAATACCC-CGAGTTGTA
1 AAATTAC-CAAATACCCTCGAGTTGTA
* *
72054976 AAATTACCAAAGTACCCCCG-GTTTATA
1 AAATTACCAAA-TACCCTCGAG-TTGTA
* *
72055003 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTA-CCAAATACCCTCGAGTTGTA
72055030 AAATTACCGAAATACCCTC-AGTTTGTA
1 AAATTACC-AAATACCCTCGAG-TTGTA
* **
72055057 AAATTACTGAAATACCCTCGACATGTA
1 AAATTAC-CAAATACCCTCGAGTTGTA
*
72055084 AAATTATCAAAGTACCCTCGA
1 AAATTACCAAA-TACCCTCGA
72055105 ATTAAAAAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
25 3 0.03
26 19 0.18
27 78 0.74
28 6 0.06
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.28
Consensus pattern (26 bp):
AAATTACCAAATACCCTCGAGTTGTA
Found at i:72055101 original size:54 final size:54
Alignment explanation
Indices: 72054950--72055102 Score: 193
Period size: 54 Copynumber: 2.9 Consensus size: 54
72054940 TTAGTTTCCC
* * *
72054950 AAATTACTGAAATACCC-CGAGTTGTAAAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCAGTTTATA
** * * *
72055003 AAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAA-TACCCTCAGTTTGTA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCTCAGTTTATA
* *
72055057 AAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
72055103 GAATTAAAAA
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
53 17 0.20
54 64 0.76
55 3 0.04
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCAGTTTATA
Found at i:72055103 original size:81 final size:80
Alignment explanation
Indices: 72054950--72055104 Score: 172
Period size: 81 Copynumber: 1.9 Consensus size: 80
72054940 TTAGTTTCCC
* ***
72054950 AAATTACTGAAATACCCCGAGTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCCAAA
1 AAATTACCGAAATACCCCGAGTTGTAAAATTACCAAAGTACCCCCGACATATAAAATTACCCAAA
*
72055015 TATCCTCGATTTGTA
66 TACCCTCGATTTGTA
* * * *
72055030 AAATTACCGAAATACCCTC-AGTTTGTAAAATTACTGAAA-TACCCTCGACATGTAAAATTA-TC
1 AAATTACCGAAATACCC-CGAG-TTGTAAAATTAC-CAAAGTACCCCCGACATATAAAATTACCC
72055092 AAAGTACCCTCGA
63 AAA-TACCCTCGA
72055105 ATTAAAAAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
80 22 0.35
81 37 0.60
82 3 0.05
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.28
Consensus pattern (80 bp):
AAATTACCGAAATACCCCGAGTTGTAAAATTACCAAAGTACCCCCGACATATAAAATTACCCAAA
TACCCTCGATTTGTA
Found at i:72055150 original size:27 final size:26
Alignment explanation
Indices: 72055120--72055180 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 26
72055110 AAAAATACTG
*
72055120 TTTTACCTTCGATTTACAGAATTACCA
1 TTTTACC-TCGATTTACAAAATTACCA
72055147 TTTTATCCTCGATTTACAAAATTACCA
1 TTTTA-CCTCGATTTACAAAATTACCA
72055174 TTTTACC
1 TTTTACC
72055181 CCTAGGGTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 2 0.06
27 28 0.88
28 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.43
Consensus pattern (26 bp):
TTTTACCTCGATTTACAAAATTACCA
Found at i:72055484 original size:31 final size:31
Alignment explanation
Indices: 72055417--72055510 Score: 100
Period size: 31 Copynumber: 3.0 Consensus size: 31
72055407 CCTCGCTGCA
* * *
72055417 ATCTGGTGGCCTCGTCACATATATCTGTTCT-
1 ATCTGGTGGCCTCGCCACATATATAT-ATCTG
*
72055448 ATCTGGTGGCTTCGCCACATATATATATCTG
1 ATCTGGTGGCCTCGCCACATATATATATCTG
* * *
72055479 TTCTGGTGGCCTAGCCACAATATCTATATCTG
1 ATCTGGTGGCCTCGCCAC-ATATATATATCTG
72055511 GTGACTTCGT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
30 3 0.06
31 38 0.72
32 12 0.23
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.36
Consensus pattern (31 bp):
ATCTGGTGGCCTCGCCACATATATATATCTG
Found at i:72055681 original size:6 final size:6
Alignment explanation
Indices: 72055650--72055737 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
72055640 TTGCATTCAC
* *
72055650 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
72055699 -TCACCTG ATTTTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
72055738 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:72055681 original size:25 final size:25
Alignment explanation
Indices: 72055653--72055723 Score: 85
Period size: 25 Copynumber: 2.8 Consensus size: 25
72055643 CATTCACATT
72055653 CTGATTTTGATTCTG-TTACCTGAT-A-
1 CTGATTTTGATTCTGATT--CTG-TCAC
*
72055678 CTGATTCTGATTCTGATTCTGTCAC
1 CTGATTTTGATTCTGATTCTGTCAC
72055703 CTGATTTTGATTCTGATTCTG
1 CTGATTTTGATTCTGATTCTG
72055724 ATTCTAGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
23 1 0.02
24 4 0.10
25 34 0.83
26 2 0.05
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (25 bp):
CTGATTTTGATTCTGATTCTGTCAC
Found at i:72055685 original size:31 final size:31
Alignment explanation
Indices: 72055650--72055728 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
72055640 TTGCATTCAC
* *
72055650 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
**
72055681 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
72055712 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
72055729 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:72058903 original size:51 final size:51
Alignment explanation
Indices: 72058833--72059073 Score: 216
Period size: 51 Copynumber: 4.7 Consensus size: 51
72058823 ACTAACACTG
* *
72058833 TGGATGACATGAAGCCTCACTCACATGGTCTTACACCTCATATCATATCTA
1 TGGATGCCATGGAGCCTCACTCACATGGTCTTACACCTCATATCATATCTA
* *** * * * *
72058884 TGGATGCCATGGAGTCTCACTCACACATTTTTACAACTTATATCAAATCTA
1 TGGATGCCATGGAGCCTCACTCACATGGTCTTACACCTCATATCATATCTA
* * * * *
72058935 TGCATGCCATGGAGCCACACTCACATGGTCTTGCACCTCTTTTCATA-CTTA
1 TGGATGCCATGGAGCCTCACTCACATGGTCTTACACCTCATATCATATC-TA
* * * ***
72058986 TGGATGCCATGGAGCCACATTCACATAG-CTTTATGGCTCATATCATATCTA
1 TGGATGCCATGGAGCCTCACTCACATGGTC-TTACACCTCATATCATATCTA
** * * *
72059037 TGGATGAGATGAAGCTTCTCTCACATGGTCTTACACC
1 TGGATGCCATGGAGCCTCACTCACATGGTCTTACACC
72059074 ATATCGCCTT
Statistics
Matches: 143, Mismatches: 43, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
50 2 0.01
51 139 0.97
52 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (51 bp):
TGGATGCCATGGAGCCTCACTCACATGGTCTTACACCTCATATCATATCTA
Found at i:72059029 original size:102 final size:102
Alignment explanation
Indices: 72058840--72059073 Score: 254
Period size: 102 Copynumber: 2.3 Consensus size: 102
72058830 CTGTGGATGA
* * *
72058840 CATGAAGCCTCACTCACATGGTCTTACACCTCATATCATATCTATGGATGCCATGGAGTCTCACT
1 CATGAAGCCACACTCACATGGTCTTACACCTCATATCATATCTATGGATGCCATGGAGCCACACT
** *
72058905 CACACATTTTTACAACTTATATCAAATCTATGCATGC
66 CACACAGCTTTACAACTCATATCAAATCTATGCATGC
* * * * *
72058942 CATGGAGCCACACTCACATGGTCTTGCACCTCTTTTCATA-CTTATGGATGCCATGGAGCCACAT
1 CATGAAGCCACACTCACATGGTCTTACACCTCATATCATATC-TATGGATGCCATGGAGCCACAC
* *** * * *
72059006 TCACATAGCTTTATGGCTCATATCATATCTATGGATGA
65 TCACACAGCTTTACAACTCATATCAAATCTATGCATGC
* ** *
72059044 GATGAAGCTTCTCTCACATGGTCTTACACC
1 CATGAAGCCACACTCACATGGTCTTACACC
72059074 ATATCGCCTT
Statistics
Matches: 107, Mismatches: 24, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
101 1 0.01
102 106 0.99
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (102 bp):
CATGAAGCCACACTCACATGGTCTTACACCTCATATCATATCTATGGATGCCATGGAGCCACACT
CACACAGCTTTACAACTCATATCAAATCTATGCATGC
Found at i:72067645 original size:79 final size:78
Alignment explanation
Indices: 72067543--72067765 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
72067533 GCTCCTCGTT
* *
72067543 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
72067608 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
72067623 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
72067686 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
72067701 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
72067764 GA
63 GA
72067766 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 46 0.37
79 56 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:72067660 original size:39 final size:40
Alignment explanation
Indices: 72067543--72067765 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
72067533 GCTCCTCGTT
* *
72067543 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
72067583 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
72067623 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
72067662 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
72067701 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
72067742 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72067766 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.54
40 63 0.38
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:72077226 original size:47 final size:47
Alignment explanation
Indices: 72077157--72077481 Score: 605
Period size: 47 Copynumber: 6.9 Consensus size: 47
72077147 AAAATTCTGA
72077157 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
72077204 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
72077251 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
72077298 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
72077345 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
* *
72077392 GTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
** *
72077439 GTATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGA
72077482 TAAGGCCTAA
Statistics
Matches: 273, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 273 1.00
ACGTcount: A:0.31, C:0.07, G:0.30, T:0.31
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGT
Found at i:72077415 original size:141 final size:141
Alignment explanation
Indices: 72077157--72077814 Score: 671
Period size: 141 Copynumber: 4.8 Consensus size: 141
72077147 AAAATTCTGA
72077157 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
*
72077222 CTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
66 CTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
72077287 AATGTGAAAGT
131 AATGTGAAAGT
72077298 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
*
72077363 CTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATG
66 CTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
72077428 AATGTGAAAGT
131 AATGTGAAAGT
** * **
72077439 GTATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGATAAG-G--CCTA----AT--GG
1 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGA-AAGTGTATATATGTGATAAGG
* * * * * * **
72077495 CC-GATGTGATGAATGTGA--AA-GTGTATATGTGTGATA-AGGCCTAAT-A-GCC-GATGTGAT
65 CCTAATG-GCTG-ATGTGATGAATGTG-A-AAGTGT-ATATATG--TGATAAGGCCTAATG-GCC
72077552 GAATGTGA--AA-GTGTATATA-T
122 G-ATGTGATGAATGTG-A-A-AGT
* * * *
72077572 GTGATA-A-G-GCCTAATGG-CTGATGTGATGA-ATG-TGA------AAGTGTATATATGTGATA
1 GT-ATATATGTG-ATAA-GGCCTAATG-GCTGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
72077625 AGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGT
62 AGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
72077690 GATGAATGTGAAAGT
127 GATGAATGTGAAAGT
* *
72077705 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGC
1 GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* * ** * * *
72077770 CGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 CTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
72077815 TCCCGAAGGG
Statistics
Matches: 423, Mismatches: 44, Indels: 100
0.75 0.08 0.18
Matches are distributed among these distances:
124 3 0.01
125 1 0.00
127 2 0.00
131 15 0.04
132 43 0.10
133 58 0.14
134 43 0.10
135 15 0.04
139 2 0.00
141 238 0.56
142 3 0.01
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (141 bp):
GTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
CTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGT
Found at i:72077485 original size:31 final size:31
Alignment explanation
Indices: 72077447--72077512 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
72077437 GTGTATATGC
72077447 GTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAAT
72077478 GTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAAT
72077509 GTGA
1 GTGA
72077513 AAGTGTATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.26
Consensus pattern (31 bp):
GTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:72077493 original size:78 final size:78
Alignment explanation
Indices: 72077398--72077559 Score: 297
Period size: 78 Copynumber: 2.1 Consensus size: 78
72077388 AAGTGTATAT
* *
72077398 ATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCCTAATG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCCTAATA
72077463 GCCGATGTGATGA
66 GCCGATGTGATGA
*
72077476 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCCTAATA
72077541 GCCGATGTGATGA
66 GCCGATGTGATGA
72077554 ATGTGA
1 ATGTGA
72077560 AAGTGTATAT
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.28
Consensus pattern (78 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCCTAATA
GCCGATGTGATGA
Found at i:72077533 original size:219 final size:219
Alignment explanation
Indices: 72077257--72077700 Score: 807
Period size: 219 Copynumber: 2.0 Consensus size: 219
72077247 AAGTGTATAT
* *
72077257 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
*
72077322 GCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG
* *
72077387 AAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGAT
131 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGAT
72077452 AAGGCCTAATGGCCGATGTGATGA
196 AAGGCCTAATGGCCGATGTGATGA
*
72077476 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
72077541 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG
* *
72077606 AAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGAT
131 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGAT
*
72077671 AAGGCCTAATGGCTGATGTGATGA
196 AAGGCCTAATGGCCGATGTGATGA
72077695 ATGTGA
1 ATGTGA
72077701 AAGTGTATAT
Statistics
Matches: 216, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
219 216 1.00
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (219 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGAT
AAGGCCTAATGGCCGATGTGATGA
Found at i:72077545 original size:47 final size:47
Alignment explanation
Indices: 72077476--72077814 Score: 561
Period size: 47 Copynumber: 7.2 Consensus size: 47
72077466 GATGTGATGA
*
72077476 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
* * *
72077523 GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
72077570 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
72077617 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
72077664 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
72077711 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
* * * * ** * * *
72077758 ATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAA
1 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
72077805 ATGTGATAAG
1 ATGTGATAAG
72077815 TCCCGAAGGG
Statistics
Matches: 276, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 276 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
Found at i:72077699 original size:266 final size:266
Alignment explanation
Indices: 72077210--72077747 Score: 995
Period size: 266 Copynumber: 2.0 Consensus size: 266
72077200 AAGTGTATAT
* *
72077210 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
*
72077275 GCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG
72077340 AAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGAT
131 AAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGAT
* *
72077405 AAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCCTAATGGCCGATG
196 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATG
72077470 TGATGA
261 TGATGA
*
72077476 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
72077541 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG
72077606 AAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGAT
131 AAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * *
72077671 AAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATG
196 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATG
72077736 TGATGA
261 TGATGA
72077742 ATGTGA
1 ATGTGA
72077748 AAGTGTATAT
Statistics
Matches: 263, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
266 263 1.00
ACGTcount: A:0.31, C:0.07, G:0.30, T:0.31
Consensus pattern (266 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATG
TGATGA
Found at i:72077989 original size:37 final size:37
Alignment explanation
Indices: 72077935--72078011 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
72077925 GAGTTCTAAG
* * *
72077935 GACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
*
72077972 GACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
72078009 GAC
1 GAC
72078012 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
Found at i:72080585 original size:26 final size:26
Alignment explanation
Indices: 72080549--72080600 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
72080539 ATTTCAAGTA
72080549 ACCGAATGGAATACCTAATTCCTTGG
1 ACCGAATGGAATACCTAATTCCTTGG
72080575 ACCGAATGGAATACCTAATTCCTTGG
1 ACCGAATGGAATACCTAATTCCTTGG
72080601 CTTTCTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ACCGAATGGAATACCTAATTCCTTGG
Found at i:72086815 original size:46 final size:46
Alignment explanation
Indices: 72086756--72086930 Score: 235
Period size: 46 Copynumber: 3.8 Consensus size: 46
72086746 TATTTGGGCA
72086756 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
72086802 TCTAAACTTGTTGAGTTGATTCTGAGTTCACTTATGGATGCAAATG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
72086848 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCT-TGGATGCGAACG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGCAAATG
* * * *
72086894 CCCAAGCTCGTTGAGTTGATTCCGAGTTTACTTATGG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72086931 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
45 1 0.01
46 109 0.98
47 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (46 bp):
TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:72089872 original size:15 final size:15
Alignment explanation
Indices: 72089852--72089920 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
72089842 GTATCTTGGG
72089852 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* * *
72089867 TCTCTTTATTCTAGA
1 TTTCTTTATCCTGGA
* *
72089882 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
72089897 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
72089912 TTTCTTTAT
1 TTTCTTTAT
72089921 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.13, C:0.17, G:0.12, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:72089914 original size:30 final size:30
Alignment explanation
Indices: 72089843--72089930 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
72089833 CATAGTATCG
* * * *
72089843 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
72089873 TAT-TCTAGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
72089903 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
72089931 TGTTATCTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 8 0.17
30 39 0.81
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:72089931 original size:14 final size:14
Alignment explanation
Indices: 72089852--72089931 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
72089842 GTATCTTGGG
*
72089852 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* *
72089867 TCTCTTTATTCTAGA
1 TTTCTTTATTC-GGA
*
72089882 TTTCTTTATTCTGGG
1 TTTCTTTATTC-GGA
* *
72089897 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
72089912 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
72089926 TTTCTT
1 TTTCTT
72089932 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
14 9 0.17
15 42 0.81
16 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.12, T:0.59
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:72092368 original size:46 final size:46
Alignment explanation
Indices: 72092315--72092536 Score: 279
Period size: 46 Copynumber: 4.8 Consensus size: 46
72092305 TATTTGGGCA
72092315 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
72092361 TCCGAACTCGTTGAGTTGAGTCCGAGTTTAGTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
72092407 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
72092452 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
72092500 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72092537 GCGGGTTACA
Statistics
Matches: 154, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
43 6 0.04
45 5 0.03
46 105 0.68
47 29 0.19
48 4 0.03
50 5 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:72092491 original size:93 final size:91
Alignment explanation
Indices: 72092315--72092531 Score: 267
Period size: 93 Copynumber: 2.4 Consensus size: 91
72092305 TATTTGGGCA
* *
72092315 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAGGTCCGAACTCGTTGAGTTGA
* * * *
72092380 GTCCGAGTTTAGTTATGGATGCAAATG
65 GTCCGAGTTCACTCATGGATGCAAACG
* *
72092407 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCATCCGAACTCGTTGAGT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--AGG--TCCGAACTCGTTGAGT
*
72092470 TGAGTCCGAGTTCACTCATGGATGCGAACG
62 TGAGTCCGAGTTCACTCATGGATGCAAACG
* * *
72092500 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
72092532 TATGGGCGGG
Statistics
Matches: 107, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
89 6 0.06
91 4 0.04
92 29 0.27
93 67 0.63
94 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (91 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAAGGTCCGAACTCGTTGAGTTGAG
TCCGAGTTCACTCATGGATGCAAACG
Found at i:72127309 original size:51 final size:51
Alignment explanation
Indices: 72127220--72127321 Score: 143
Period size: 51 Copynumber: 2.0 Consensus size: 51
72127210 CTAGGGAACG
* *
72127220 AGTTACCTGGGAATTCTTTCAGACAGAGTTTCGAAAGAAGTACATAAGCCA
1 AGTTACCTGGGAATTCTTTCAGACAGAATTTAGAAAGAAGTACATAAGCCA
* * *
72127271 AGTTACCTTGGAATTCTTTCAGAGTA-AATTTAGGAAGAAGTACATAAGCCA
1 AGTTACCTGGGAATTCTTTCAGA-CAGAATTTAGAAAGAAGTACATAAGCCA
72127322 GAGATTTCTC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
51 44 0.98
52 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (51 bp):
AGTTACCTGGGAATTCTTTCAGACAGAATTTAGAAAGAAGTACATAAGCCA
Found at i:72133889 original size:38 final size:38
Alignment explanation
Indices: 72133838--72134039 Score: 244
Period size: 38 Copynumber: 5.3 Consensus size: 38
72133828 ATATTCGATG
*
72133838 TATATCTGGGTTAAATCTCGCAGGCTTCGTGCTGGTAT
1 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
72133876 TATATCTGGGTTAAATCTCGCAGGCTTTGTACTGGTAT
1 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
72133914 TATATCCGGGCTTACAGA-CCCGCAGGCTTCGTGCTGGTAA
1 TATATCTGGG-TTA-A-ATCCCGCAGGCTTCGTGCTGGTAT
* * *
72133954 AATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAT
1 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
72133992 TATATCTGGGATAAATCCCACAGGCCTAGTGCTGGTAT
1 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
72134030 TATATTTGGG
1 TATATCTGGG
72134040 CCTTCGTGCC
Statistics
Matches: 142, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
37 1 0.01
38 106 0.75
39 6 0.04
40 28 0.20
41 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (38 bp):
TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:72133949 original size:78 final size:76
Alignment explanation
Indices: 72133838--72134039 Score: 226
Period size: 78 Copynumber: 2.6 Consensus size: 76
72133828 ATATTCGATG
* * * *
72133838 TATATCTGGGTTAAATCTCGCAGGCTTCGTGCTGGTATTATATCTGGGTTAAATCTCGCAGGCTT
1 TATATCCGGGATAAATCCCGCAGGCTTCGTGCTGGTATTATATCTGGGTTAAATCCCGCAGGCTT
**
72133903 TGTACTGGTAT
66 CATACTGGTAT
* ** *
72133914 TATATCCGGGCTTACAGA-CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGG
1 TATATCCGGG-ATA-A-ATCCCGCAGGCTTCGTGCTGGTATTATATCTGGGTTAAATCCCGCAGG
*
72133978 CTTCATGCTGGTAT
63 CTTCATACTGGTAT
* * * * *
72133992 TATATCTGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATTTGGG
1 TATATCCGGGATAAATCCCGCAGGCTTCGTGCTGGTATTATATCTGGG
72134040 CCTTCGTGCC
Statistics
Matches: 104, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
75 1 0.01
76 35 0.34
77 5 0.05
78 62 0.60
79 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (76 bp):
TATATCCGGGATAAATCCCGCAGGCTTCGTGCTGGTATTATATCTGGGTTAAATCCCGCAGGCTT
CATACTGGTAT
Found at i:72142845 original size:43 final size:43
Alignment explanation
Indices: 72142719--72142874 Score: 143
Period size: 43 Copynumber: 3.6 Consensus size: 43
72142709 ACACCATATG
* * * * *** * *
72142719 CCAGATATGGTCTTACATGTTATCACATTTCGATGCCACTATC
1 CCAGACATGGTCTTACACGTAATCACAATAAAATGCCAATGTC
* * *
72142762 CCAGACAAGGTCTTACACGAAATCA-TATAATAATGCCAATGTC
1 CCAGACATGGTCTTACACGTAATCACAATAA-AATGCCAATGTC
*
72142805 CCAGACATGGTCTTACACGTAATCACAATAAAATGCCAATGTT
1 CCAGACATGGTCTTACACGTAATCACAATAAAATGCCAATGTC
* * * *
72142848 CTAGACATAGTCCTACATGTAATCACA
1 CCAGACATGGTCTTACACGTAATCACA
72142875 TCTCGGTAAT
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
42 1 0.01
43 86 0.95
44 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (43 bp):
CCAGACATGGTCTTACACGTAATCACAATAAAATGCCAATGTC
Found at i:72148054 original size:29 final size:28
Alignment explanation
Indices: 72148019--72148080 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
72148009 GGGTCTAACA
*
72148019 GGCCATATAAATGTGATTTAGGCCTAATG
1 GGCCATATAAATATGA-TTAGGCCTAATG
* * *
72148048 GGCCATATGAATATGATTGGGCTTAATG
1 GGCCATATAAATATGATTAGGCCTAATG
72148076 GGCCA
1 GGCCA
72148081 GATACAGGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 15 0.52
29 14 0.48
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (28 bp):
GGCCATATAAATATGATTAGGCCTAATG
Found at i:72150318 original size:33 final size:33
Alignment explanation
Indices: 72150272--72150339 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
72150262 TGGAATTAGA
72150272 GATAGCCTCAGGGTATTGATAACTCCACAAAGG
1 GATAGCCTCAGGGTATTGATAACTCCACAAAGG
* *
72150305 GATAGCCTTAGGGTATTGATAACTCCATAAAGG
1 GATAGCCTCAGGGTATTGATAACTCCACAAAGG
72150338 GA
1 GA
72150340 GCGAGTTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.24
Consensus pattern (33 bp):
GATAGCCTCAGGGTATTGATAACTCCACAAAGG
Found at i:72152568 original size:29 final size:28
Alignment explanation
Indices: 72152513--72152627 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
72152503 ATGAGCATGA
* *
72152513 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGACTGGGCCTAATGGGCC
*
72152541 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-CTGGGCCTAATGGGCC
* * *
72152570 ATATACAA-GTGATTTGGGCTTAATGGGTC
1 ATATA-AATGTGA-CTGGGCCTAATGGGCC
* * *
72152599 ATATGAATATGACTGGGCTTAATGGGCC
1 ATATAAATGTGACTGGGCCTAATGGGCC
72152627 A
1 A
72152628 GATTCAGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 28 0.37
29 45 0.60
30 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGACTGGGCCTAATGGGCC
Found at i:72156310 original size:50 final size:49
Alignment explanation
Indices: 72156196--72156435 Score: 255
Period size: 50 Copynumber: 4.8 Consensus size: 49
72156186 TGAGGTCGCA
* * * * *
72156196 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAGT-TGATCACG
* * *
72156247 TGTGTAGTGCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT-GATCACG
* * *
72156297 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT-GATCACG
* * * * * *
72156347 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGATCACG
* * **
72156396 TGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
72156436 CTTTGGCTAC
Statistics
Matches: 166, Mismatches: 22, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
49 41 0.25
50 94 0.57
51 31 0.19
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGATCACG
Found at i:72189178 original size:43 final size:43
Alignment explanation
Indices: 72189117--72189258 Score: 153
Period size: 43 Copynumber: 3.3 Consensus size: 43
72189107 TAACGCCATA
* * * *
72189117 TCCCAGATATGGTCTTACATGTTATCACATATCAATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATG
* * * * *
72189160 TCCCAGACAAGGTCTTACACGAAATCATATAAT-GATGCCAATA
1 TCCCAGACATGGTCTTACACGTAATCACAT-ATCAATGCCAATG
* *
72189203 TCCTAGACATGGTCTAACACGTAATCACA-ATACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATAT-CAATGCCAATG
72189246 TCCCAGACATGGT
1 TCCCAGACATGGT
72189259 GTAACACCCC
Statistics
Matches: 79, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
41 2 0.03
43 75 0.95
44 2 0.03
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATG
Found at i:72190849 original size:28 final size:28
Alignment explanation
Indices: 72190786--72190883 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
72190776 ATATTAAGTC
*
72190786 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72190813 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
72190841 CGAACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72190870 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72190884 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 22 0.35
28 22 0.35
29 18 0.29
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72214004 original size:15 final size:14
Alignment explanation
Indices: 72213963--72214011 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
72213953 GCATACATAG
72213963 TTTTTTCTTTTCTT
1 TTTTTTCTTTTCTT
**
72213977 TATAGTT-TTTTCTT
1 T-TTTTTCTTTTCTT
72213991 TTCTTTTCTTTTCTT
1 TT-TTTTCTTTTCTT
72214006 TTTTTT
1 TTTTTT
72214012 AAGAAAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
13 1 0.04
14 15 0.54
15 12 0.43
ACGTcount: A:0.04, C:0.12, G:0.02, T:0.82
Consensus pattern (14 bp):
TTTTTTCTTTTCTT
Found at i:72214011 original size:19 final size:19
Alignment explanation
Indices: 72213959--72213996 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
72213949 ATATGCATAC
72213959 ATAGTTTTTTCTTTTCTTT
1 ATAGTTTTTTCTTTTCTTT
72213978 ATAGTTTTTTCTTTTCTTT
1 ATAGTTTTTTCTTTTCTTT
72213997 TCTTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.05, T:0.74
Consensus pattern (19 bp):
ATAGTTTTTTCTTTTCTTT
Found at i:72214910 original size:17 final size:17
Alignment explanation
Indices: 72214888--72214920 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
72214878 CAAGTTAACA
72214888 AATGAAT-TCTAAAAACG
1 AATGAATCT-TAAAAACG
72214905 AATGAATCTTAAAAAC
1 AATGAATCTTAAAAAC
72214921 TTAATAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
AATGAATCTTAAAAACG
Found at i:72215375 original size:14 final size:14
Alignment explanation
Indices: 72215356--72215382 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
72215346 TTAAAGTGTT
72215356 AGAAATTAAAATAA
1 AGAAATTAAAATAA
72215370 AGAAATTAAAATA
1 AGAAATTAAAATA
72215383 TGTTAGTGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.22
Consensus pattern (14 bp):
AGAAATTAAAATAA
Found at i:72228927 original size:64 final size:64
Alignment explanation
Indices: 72228845--72229003 Score: 167
Period size: 68 Copynumber: 2.4 Consensus size: 64
72228835 ACTTAGTACT
* * * *
72228845 ACACATGGGACCTAGCTACATATATCCCGTAGCTCTCTTGT-CTACATGGTGTACACATAGTATC
1 ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTAC-ACATGATGTACACATAGCACC
* ** *
72228909 ACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTACACTTAGC
1 ACACATGCGACCTAGCTACAT-AT-A--TCCCGTAGCTCTCTTGTACACATGATGTACACATAGC
72228974 ACC
62 ACC
* *
72228977 ATACATGTGACCTAGCTACATACTATC
1 ACACATGCGACCTAGCTACATA-TATC
72229004 TGTATCATCC
Statistics
Matches: 78, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
64 19 0.24
65 4 0.05
66 1 0.01
67 2 0.03
68 51 0.65
69 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (64 bp):
ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTACACATGATGTACACATAGCACC
Found at i:72229706 original size:30 final size:30
Alignment explanation
Indices: 72229658--72229718 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72229648 TCCTTAACTC
*
72229658 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTACCCCT
* * * *
72229688 AAACTTTTGCATATTTACACTTTTACCCCT
1 AAACTTTTGAAAAATTACAATTTTACCCCT
72229718 A
1 A
72229719 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTACCCCT
Found at i:72244983 original size:72 final size:72
Alignment explanation
Indices: 72244866--72245008 Score: 259
Period size: 72 Copynumber: 2.0 Consensus size: 72
72244856 TATGAACTTA
* *
72244866 CAATTTCTCATAATATCCAGAATCATAGAAATCGCATTTATGTATGATAATTCAATGCACTTCAT
1 CAATTTCACATAATATCCAGAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTCAT
72244931 GTACCAC
66 GTACCAC
*
72244938 CAATTTCACATAATATCCATAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTCAT
1 CAATTTCACATAATATCCAGAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTCAT
72245003 GTACCA
66 GTACCA
72245009 TAGACATATT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (72 bp):
CAATTTCACATAATATCCAGAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTCAT
GTACCAC
Found at i:72254289 original size:40 final size:40
Alignment explanation
Indices: 72254143--72254321 Score: 195
Period size: 40 Copynumber: 4.5 Consensus size: 40
72254133 TTGAATGATG
* * * *
72254143 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
72254183 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72254223 TCCGGGCT-AGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
72254262 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72254303 -CCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
72254322 TGTTTGAACG
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.29
40 72 0.62
41 10 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72254349 original size:79 final size:79
Alignment explanation
Indices: 72254196--72254360 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
72254186 GGACTAAGAT
* * **
72254196 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAGGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAGGCCCGAAGGCATTTGAACGAGTTACTAA
*
72254261 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * **
72254275 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGTGTTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTA-GGCCCGAAGGCATTTGAACGAGTTA-C
* *
72254338 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
72254354 CCGAAGG
1 CCGAAGG
72254361 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAGGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:72268333 original size:30 final size:30
Alignment explanation
Indices: 72268299--72268359 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72268289 TCCTTAACTC
72268299 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
72268329 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
72268359 A
1 A
72268360 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:72271481 original size:34 final size:32
Alignment explanation
Indices: 72271434--72271527 Score: 89
Period size: 34 Copynumber: 2.8 Consensus size: 32
72271424 GTTTCAGTCA
* *
72271434 GGGCCTTATCCCATATCAGTAACAGTAGCAGTTT
1 GGGCCTAAGCCCAT-TCAGTAACAGTAGCAG-TT
* * **
72271468 GGGCCTGAGCCCATTTCAGTAATAGTATTAGTT
1 GGGCCTAAGCCCA-TTCAGTAACAGTAGCAGTT
*
72271501 GGGCCTAAGCCCATTACAGTATCAGTA
1 GGGCCTAAGCCCATT-CAGTAACAGTA
72271528 CACTATCCAA
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
32 2 0.04
33 23 0.46
34 24 0.48
35 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (32 bp):
GGGCCTAAGCCCATTCAGTAACAGTAGCAGTT
Found at i:72271512 original size:33 final size:34
Alignment explanation
Indices: 72271434--72271527 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 34
72271424 GTTTCAGTCA
* * *
72271434 GGGCCTTATCCCATATCAGTAACAGTAGCAGTTT
1 GGGCCTAAGCCCATTTCAGTAACAGTAGCAGTTT
* * **
72271468 GGGCCTGAGCCCATTTCAGTAATAGTATTAG-TT
1 GGGCCTAAGCCCATTTCAGTAACAGTAGCAGTTT
* *
72271501 GGGCCTAAGCCCATTACAGTATCAGTA
1 GGGCCTAAGCCCATTTCAGTAACAGTA
72271528 CACTATCCAA
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 25 0.50
34 25 0.50
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAGTAACAGTAGCAGTTT
Found at i:72280685 original size:6 final size:6
Alignment explanation
Indices: 72280674--72280740 Score: 102
Period size: 6 Copynumber: 11.5 Consensus size: 6
72280664 TGAAATGAAG
72280674 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA AT-AAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
* *
72280721 ATAAGA ATAAAT A-AAAA ATA
1 ATAAAA ATAAAA ATAAAA ATA
72280741 GAATGATTCA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
5 9 0.16
6 46 0.84
ACGTcount: A:0.81, C:0.00, G:0.01, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:72288151 original size:18 final size:19
Alignment explanation
Indices: 72288128--72288163 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
72288118 TAAACTTGGC
*
72288128 ACCATAA-TCATTTAATTT
1 ACCATAATTCAATTAATTT
72288146 ACCATAATTCAATTAATT
1 ACCATAATTCAATTAATT
72288164 CACTACATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (19 bp):
ACCATAATTCAATTAATTT
Found at i:72288503 original size:30 final size:30
Alignment explanation
Indices: 72288455--72288515 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72288445 TCCTTAACTC
*
72288455 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTACCCCT
* * * *
72288485 AAACTTTTGCATATTTACACTTTTACCCCT
1 AAACTTTTGAAAAATTACAATTTTACCCCT
72288515 A
1 A
72288516 GGCTCGGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTACCCCT
Found at i:72289709 original size:13 final size:13
Alignment explanation
Indices: 72289687--72289719 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
72289677 AAGTGTTTGT
72289687 TTAT-TAAACTAA
1 TTATCTAAACTAA
72289699 TTATCTAAACTAA
1 TTATCTAAACTAA
*
72289712 TTAACTAA
1 TTATCTAA
72289720 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:72290249 original size:13 final size:13
Alignment explanation
Indices: 72290233--72290258 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72290223 GTTTTATCCC
72290233 CCTTAGGTATCTA
1 CCTTAGGTATCTA
72290246 CCTTAGGTATCTA
1 CCTTAGGTATCTA
72290259 ATTATCCCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
CCTTAGGTATCTA
Found at i:72297786 original size:29 final size:29
Alignment explanation
Indices: 72297723--72297790 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
72297713 TAATCAACCG
*
72297723 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* * **
72297752 CACACACTTAGTGTCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
72297781 CGCACACTTA
1 CGCACACTTA
72297791 CCTTTTTCGC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72297902 original size:174 final size:174
Alignment explanation
Indices: 72297612--72298113 Score: 932
Period size: 174 Copynumber: 2.9 Consensus size: 174
72297602 AACTCAAGGT
* *
72297612 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
72297677 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
72297742 ACTTTAAACTCACACACTTAGTGTCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
72297786 ACTTACCTTTTTCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
72297851 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
72297916 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
**
72297960 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCATACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
72298025 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
72298090 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
72298114 TGTACAATTT
Statistics
Matches: 318, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 318 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:72297960 original size:29 final size:29
Alignment explanation
Indices: 72297897--72297964 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
72297887 TAATCAACCG
72297897 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
72297926 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
72297955 CGCACACTTA
1 CGCACACTTA
72297965 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72298105 original size:29 final size:30
Alignment explanation
Indices: 72298066--72298144 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
72298056 CTTAATAATC
72298066 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
72298096 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
72298125 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72298145 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:72300694 original size:13 final size:13
Alignment explanation
Indices: 72300676--72300701 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72300666 CGAAGCATGA
72300676 CTCACACGGGCGT
1 CTCACACGGGCGT
72300689 CTCACACGGGCGT
1 CTCACACGGGCGT
72300702 GTCCTTGTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
CTCACACGGGCGT
Found at i:72302346 original size:13 final size:13
Alignment explanation
Indices: 72302324--72302356 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
72302314 AAAGATTTGT
72302324 TTAT-TAAACTAA
1 TTATCTAAACTAA
72302336 TTATCTAAACTAA
1 TTATCTAAACTAA
*
72302349 TTAACTAA
1 TTATCTAA
72302357 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:72305179 original size:5 final size:5
Alignment explanation
Indices: 72305169--72305272 Score: 81
Period size: 5 Copynumber: 20.2 Consensus size: 5
72305159 TATGTCTTTG
* * * *
72305169 AAAAT AAAAT --AAT AAAATT GAAAT GAAGAT AAAAAT AAAAGA AAAAGA
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT AAAA-T AAAA-T
72305217 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAAT AAGAAT -AAAT AAAA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT AAAAT
72305267 AAAAT A
1 AAAAT A
72305273 GGAGGATTCA
Statistics
Matches: 83, Mismatches: 7, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
3 3 0.04
4 7 0.08
5 44 0.53
6 29 0.35
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:72321305 original size:43 final size:43
Alignment explanation
Indices: 72321218--72321373 Score: 181
Period size: 43 Copynumber: 3.6 Consensus size: 43
72321208 TCTGAATTCA
* * * * *
72321218 TTCACCGGCATT-TTGCATGCTAGGCTTAAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCAATATTAT
*
72321260 TTCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCAATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCAATATTAT
* * *
72321303 TTCACCGCGTATTATAGCCTACTAGGCTCGAGG-CCAGATATTAT
1 TTCACCG-GCATTATAGCCTGCTAGGCTCAAGGCCCA-ATATTAT
**
72321347 TTCACTAGCATTATAGCCTGCTAGGCT
1 TTCACCGGCATTATAGCCTGCTAGGCT
72321374 TGAAGCCCAA
Statistics
Matches: 97, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
42 12 0.12
43 52 0.54
44 33 0.34
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCAATATTAT
Found at i:72325049 original size:43 final size:43
Alignment explanation
Indices: 72325002--72325129 Score: 138
Period size: 43 Copynumber: 3.0 Consensus size: 43
72324992 TAGGATTTAT
* *
72325002 GATATGTGTTCTCGTGTAAGACCACAT-T-TGGGACATTTGCATC
1 GATATGTGTTCTCGTGTAAGACC-C-TGTCTGGGACAGTGGCATC
72325045 GATATGTGTTCTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATATGTGTTCTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
* * * *
72325088 GATATGTGATT-ACATGTAAGACCATGTGTGGGAC-GTTGGCAT
1 GATATGTG-TTCTCGTGTAAGACCCTGTCTGGGACAG-TGGCAT
72325130 TGTACGATAT
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
41 1 0.01
42 3 0.04
43 69 0.92
44 2 0.03
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
GATATGTGTTCTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
Found at i:72330376 original size:43 final size:43
Alignment explanation
Indices: 72330307--72330419 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
72330297 AGCTCATACA
* *
72330307 ATGCCAAC-GTCCCAGAC-GTGGCCTTACATGTAATCAAAT-ATCG
1 ATGCCAACTGTCCCAGACAG-GGTCTTACATGAAATCAAATGA--G
72330350 ATGCC-ACTGTCCCAGACAGGGTCTTACATGAAATCAAATGAG
1 ATGCCAACTGTCCCAGACAGGGTCTTACATGAAATCAAATGAG
* * *
72330392 ATGCCGA-TGTCCTAGACATGGTCTTACA
1 ATGCCAACTGTCCCAGACAGGGTCTTACA
72330420 CATAAATCAT
Statistics
Matches: 62, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
42 27 0.44
43 33 0.53
44 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAACTGTCCCAGACAGGGTCTTACATGAAATCAAATGAG
Found at i:72332969 original size:14 final size:15
Alignment explanation
Indices: 72332950--72332978 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72332940 AACATATATG
72332950 TACAACCAA-ACATC
1 TACAACCAAGACATC
72332964 TACAACCAAGACATC
1 TACAACCAAGACATC
72332979 AACACATCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.34, G:0.03, T:0.14
Consensus pattern (15 bp):
TACAACCAAGACATC
Found at i:72339748 original size:83 final size:83
Alignment explanation
Indices: 72339622--72339849 Score: 356
Period size: 83 Copynumber: 2.8 Consensus size: 83
72339612 AACCCAAGTA
* ** *
72339622 CCTTCGGGATTTAG-CCGAATATAGCAAC--C-CGCACAAATGCCTTCGGGTCTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
72339683 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
* * *
72339701 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCAAAAATGCCTTCGGGACTTCGCTCGGATA
1 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
72339766 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
*
72339784 CCTTCGGGACTTAGCTCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
72339849 T
66 T
72339850 CATCCGAATA
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
79 13 0.10
80 12 0.09
82 1 0.01
83 108 0.81
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (83 bp):
CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
TAGTCACTAGCACAAATG
Found at i:72339753 original size:43 final size:42
Alignment explanation
Indices: 72339622--72339849 Score: 276
Period size: 40 Copynumber: 5.5 Consensus size: 42
72339612 AACCCAAGTA
* *
72339622 CCTTCGGGATTTAG-CCGAATATAGCAAC--CCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACCGCACAAATG
*
72339661 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTA--GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTACCGCACAAATG
* *
72339701 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAC-CGCACAAATG
* *
72339744 CCTTCGGGACTTCGCTCGGATATAGTC-ACTA--GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTACCGCACAAATG
* *
72339784 CCTTCGGGACTTAGCTCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAC-CGCACAAATG
72339827 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72339850 CATCCGAATA
Statistics
Matches: 162, Mismatches: 14, Indels: 22
0.82 0.07 0.11
Matches are distributed among these distances:
39 14 0.09
40 82 0.51
41 1 0.01
43 64 0.40
44 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (42 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTACCGCACAAATG
Found at i:72347364 original size:40 final size:40
Alignment explanation
Indices: 72347290--72347466 Score: 225
Period size: 40 Copynumber: 4.4 Consensus size: 40
72347280 AACCCAAGTA
* **
72347290 CCTTCGGGATTTAG-CCGGATATAGCAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
72347329 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
* *
72347369 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
*
72347412 CCTTCGGGACTTCGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
72347452 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
72347467 TCGGNNNNNN
Statistics
Matches: 120, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
39 13 0.11
40 70 0.58
41 1 0.01
43 35 0.29
44 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:72347414 original size:83 final size:80
Alignment explanation
Indices: 72347290--72347466 Score: 275
Period size: 83 Copynumber: 2.2 Consensus size: 80
72347280 AACCCAAGTA
* *
72347290 CCTTCGGGATTTAG-CCGGATATAGCAACCCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACCCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
72347354 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* * *
72347369 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGGACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAAC--C-CGCACAAATGCCTTCGGGACTTAGCCCGGATA
72347434 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
72347452 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
72347467 TCGGNNNNNN
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
79 13 0.15
80 13 0.15
82 1 0.01
83 62 0.70
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACCCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:72358706 original size:14 final size:14
Alignment explanation
Indices: 72358665--72358713 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
72358655 ATAAGCCAAC
72358665 ATATAAGGCATTAT
1 ATATAAGGCATTAT
* **
72358679 ATACATCACACATTAT
1 AT--ATAAGGCATTAT
72358695 ATATAAGGCATTAT
1 ATATAAGGCATTAT
72358709 ATATA
1 ATATA
72358714 TCACTTACCA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
14 16 0.59
16 11 0.41
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.35
Consensus pattern (14 bp):
ATATAAGGCATTAT
Found at i:72370162 original size:45 final size:47
Alignment explanation
Indices: 72370080--72370259 Score: 206
Period size: 45 Copynumber: 3.7 Consensus size: 47
72370070 AAAACTGTGA
72370080 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAG-A-T-AGTGCAGGCTACTACGTGTATCAGATGGTTAGG
72370130 TCACGTGTGTAG-T-GTGCAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGATAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
* * **
72370175 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GG
1 TCACGTGTGTAG-A-T-AGTGCAGGCTACTACGTGTATCAGATGGTTAGG
*
72370224 TCACATGTGTAGTACTAAGTGCAGGCTACTA-GTGTA
1 TCACGTGTGTAG-A-T-AGTGCAGGCTACTACGTGTA
72370260 CCGGATAATT
Statistics
Matches: 120, Mismatches: 5, Indels: 12
0.88 0.04 0.09
Matches are distributed among these distances:
45 44 0.37
47 1 0.01
48 6 0.05
49 32 0.27
50 37 0.31
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (47 bp):
TCACGTGTGTAGATAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
Found at i:72370182 original size:22 final size:22
Alignment explanation
Indices: 72370110--72370182 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
72370100 GCAGGCTACT
72370110 ACGTGTATCAGATGGTTAGGTC
1 ACGTGTATCAGATGGTTAGGTC
* *
72370132 ACGTGTGT-AG-T-GTGCAGGCTAC
1 ACGTGTATCAGATGGT-TAGG-T-C
72370154 TACGTGTATCAGATGGTTAGGTC
1 -ACGTGTATCAGATGGTTAGGTC
72370177 ACGTGT
1 ACGTGT
72370183 GTAGTACTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
19 2 0.05
20 4 0.10
21 3 0.08
22 14 0.35
23 8 0.20
24 3 0.08
25 4 0.10
26 2 0.05
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.32
Consensus pattern (22 bp):
ACGTGTATCAGATGGTTAGGTC
Found at i:72370282 original size:48 final size:49
Alignment explanation
Indices: 72370035--72370302 Score: 242
Period size: 48 Copynumber: 5.5 Consensus size: 49
72370025 GAGGTCGCAT
* * * ** * * **
72370035 GTGTAGTACTAAGTGCAGACTACTATGCGTACCCAAAAACTGTGATCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACAA
* * **
72370086 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCAC--
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACAA
* * * ** **
72370134 GTGT-GTAGT--GTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACAA
*
72370181 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACAA
**
72370230 GTGTAGTACTAAGTGCAGGCTACTA-GTGTACCGGATAATTGGTTGCAA
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACAA
*
72370278 GTGTAGTACTATGTGCAGGCTACTA
1 GTGTAGTACTAAGTGCAGGCTACTA
72370303 TCCGTACCAG
Statistics
Matches: 190, Mismatches: 21, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
45 36 0.19
47 8 0.04
48 52 0.27
49 33 0.17
50 31 0.16
51 30 0.16
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (49 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACAA
Found at i:72375364 original size:45 final size:45
Alignment explanation
Indices: 72375297--72375394 Score: 155
Period size: 45 Copynumber: 2.2 Consensus size: 45
72375287 CCAAAACATG
* *
72375297 TGTCATATATATCACGAGCTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
*
72375342 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
72375387 --TCACATAT
1 TGTCACATAT
72375395 TTCCTAGTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.16
45 42 0.84
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:72375385 original size:21 final size:21
Alignment explanation
Indices: 72375316--72375391 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 21
72375306 TATCACGAGC
72375316 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* * **
72375337 TCAGATGTCACATATATC-ATGAAC
1 TCAGA--CCACA-A-CTCAATGAGT
72375361 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
*
72375382 TCAGATCACA
1 TCAGACCACA
72375392 TATTTCCTAG
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
20 2 0.05
21 19 0.46
22 4 0.10
23 4 0.10
24 10 0.24
25 2 0.05
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.22
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:72378900 original size:40 final size:38
Alignment explanation
Indices: 72378856--72379044 Score: 159
Period size: 38 Copynumber: 4.9 Consensus size: 38
72378846 GAATCCAGTC
* *
72378856 ACCAGCACAAAACCTGTGGGACTTTAAGCTCGGATATAAT
1 ACCAGCACAAAACCTGCGGGA-TTTAA-CCCGGATATAAT
*
72378896 ACCAGCA-ATAATA-CTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACA-AA-ACCTGCGGGATTTAACCCGGATATAAT
* * *
72378934 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACAAAACCTGCGGGATTTAACCCGGATATAAT
* * * * *
72378972 ACTAGCACGAAGCCTACAGGATTTAACCCGGATATAAT
1 ACCAGCACAAAACCTGCGGGATTTAACCCGGATATAAT
* * * * *
72379010 -TCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACAAAACCTGCGGG-ATTTAA-CCCGGATA
72379045 CACATCAAAT
Statistics
Matches: 124, Mismatches: 19, Indels: 13
0.79 0.12 0.08
Matches are distributed among these distances:
37 12 0.10
38 81 0.65
39 14 0.11
40 16 0.13
41 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.23
Consensus pattern (38 bp):
ACCAGCACAAAACCTGCGGGATTTAACCCGGATATAAT
Found at i:72378969 original size:76 final size:77
Alignment explanation
Indices: 72378856--72379044 Score: 193
Period size: 76 Copynumber: 2.5 Consensus size: 77
72378846 GAATCCAGTC
* * * * * * *
72378856 ACCAGCACAAAACCTGTGGGACTTTAAGCTCGGATATAATACCAGCAATAATACTGCGGGATTTA
1 ACCAGCACAAAGCCTGCGGGA-TTTAAGCCCGGATATAATACCAGCAAGAAGACTACAGGATTTA
72378921 ACCCAGATATAAT
65 ACCCAGATATAAT
* * * * *
72378934 ACCAGCACGAAGCCTGCGGGATTTAA-CCCGGATATATTACTAGCACGAAGCCTACAGGATTTAA
1 ACCAGCACAAAGCCTGCGGGATTTAAGCCCGGATATAATACCAGCAAGAAGACTACAGGATTTAA
*
72378998 CCCGGATATAAT
66 CCCAGATATAAT
* * * *
72379010 -TCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACAAAGCCTGCGGG-ATTTAAGCCCGGATA
72379045 CACATCAAAT
Statistics
Matches: 91, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
75 15 0.16
76 45 0.49
77 13 0.14
78 18 0.20
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.23
Consensus pattern (77 bp):
ACCAGCACAAAGCCTGCGGGATTTAAGCCCGGATATAATACCAGCAAGAAGACTACAGGATTTAA
CCCAGATATAAT
Found at i:72381318 original size:45 final size:45
Alignment explanation
Indices: 72381263--72381349 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
72381253 CCAAAACATG
* *
72381263 TGTCATATATATCACAAACTCAGACCACAACTCAATGAGTTTGGA
1 TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTTGGA
** * *
72381308 TGTCACATATATCATGAACTTAAACCACAGCTCAATGAGTTT
1 TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTT
72381350 AGATCACATA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.29
Consensus pattern (45 bp):
TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTTGGA
Found at i:72387854 original size:42 final size:42
Alignment explanation
Indices: 72387802--72387914 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 42
72387792 CTAAGACTAT
* * *
72387802 GTGTAAGACCATATCTGGGATATGGCCTCAATATGAGA-CTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATACGAGATC-CC
* *
72387844 GTGTAAGACCATATCTGGGCTATTGGCATCGATACGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCAATACGAGATCCC
*
72387887 ATGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
72387915 TGGTATGGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 27 0.44
43 34 0.55
44 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCAATACGAGATCCC
Found at i:72394702 original size:43 final size:43
Alignment explanation
Indices: 72394625--72394734 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 43
72394615 TGAGAAAGCG
*
72394625 CTGCTAAAGAACGTGACCTTTAGTGTCGCCTTTCACACAAACA
1 CTGCTAAAGAACGTGACCTTTAGCGTCGCCTTTCACACAAACA
* * **
72394668 CTGCTAAAGAACGTGACCTTTAGCGAT-GCTTTTCATACAAATT
1 CTGCTAAAGAACGTGACCTTTAGCG-TCGCCTTTCACACAAACA
* * *
72394711 CCGCTAAAGAGCATGACCTTTAGC
1 CTGCTAAAGAACGTGACCTTTAGC
72394735 AGCGCTTTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 57 0.98
44 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
CTGCTAAAGAACGTGACCTTTAGCGTCGCCTTTCACACAAACA
Found at i:72395584 original size:13 final size:14
Alignment explanation
Indices: 72395558--72395586 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
72395548 ACTAATGACG
72395558 AATTAAACCATTAT
1 AATTAAACCATTAT
72395572 AATTAAA-CATTAT
1 AATTAAACCATTAT
72395585 AA
1 AA
72395587 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:72403993 original size:43 final size:43
Alignment explanation
Indices: 72403927--72404034 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
72403917 CTATTCGAGC
* *
72403927 CTTCGAGCCTAGCAGGCTATAATGCCGGTGATTTAATATCGGG
1 CTTCAAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGG
* * *
72403970 CTTTAAGCCTAGCAGGCTATAATGCTGGTGAGTTAATATCGTG
1 CTTCAAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGG
*
72404013 CTTCGAGCCTAGCAGGC-ATAAT
1 CTTCAAGCCTAGCAGGCTATAAT
72404035 ACCAGTGAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
42 5 0.09
43 53 0.91
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (43 bp):
CTTCAAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGG
Found at i:72404570 original size:41 final size:41
Alignment explanation
Indices: 72404511--72404792 Score: 352
Period size: 41 Copynumber: 6.9 Consensus size: 41
72404501 ATAAAACACG
*
72404511 GAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAA-TA
1 GAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCA
* *
72404551 GAGCAATAACGGCGTTTTTTGATAAAACGCCGCTAAAAA-CA
1 GAGCAATAGCGGCG-TTTTTGGTAAAACGCCGCTAAAAACCA
**** *
72404592 GAGCAATAGCGGCGTTTTACCAAAAACGCCGCAAAAAACCA
1 GAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCA
* *
72404633 GAGCATTAGCGGCGTTTTTGGTGAAACGCCGCTAAAAACCA
1 GAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCA
* * *
72404674 GAGCATTAGCGGTGCTTTTGGTAAAACGCCGCTAAAAACCA
1 GAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCA
* *
72404715 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCA
1 GAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCA
* ** * * *
72404756 GAGCATTAGCGGCACTTTCGATAAAACGCCGTTAAAA
1 GAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAA
72404793 GTCATATAAT
Statistics
Matches: 216, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
40 32 0.15
41 184 0.85
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (41 bp):
GAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCA
Found at i:72404868 original size:16 final size:16
Alignment explanation
Indices: 72404847--72404897 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
72404837 ACTAATCTAT
72404847 AACCCCTAAAACACTA
1 AACCCCTAAAACACTA
*
72404863 AACCCCTAAATC-CTAAA
1 AACCCCTAAAACACT--A
72404880 AACCCCT-AAACACTA
1 AACCCCTAAAACACTA
72404895 AAC
1 AAC
72404898 TATAACCCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 6 0.20
16 14 0.47
17 10 0.33
ACGTcount: A:0.49, C:0.37, G:0.00, T:0.14
Consensus pattern (16 bp):
AACCCCTAAAACACTA
Found at i:72404895 original size:17 final size:17
Alignment explanation
Indices: 72404847--72404896 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
72404837 ACTAATCTAT
72404847 AACCCCTAAAACACT--A
1 AACCCCT-AAACACTAAA
72404863 AACCCCTAAATC-CTAAA
1 AACCCCTAAA-CACTAAA
72404880 AACCCCTAAACACTAAA
1 AACCCCTAAACACTAAA
72404897 CTATAACCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 5 0.17
16 9 0.30
17 16 0.53
ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14
Consensus pattern (17 bp):
AACCCCTAAACACTAAA
Found at i:72405189 original size:16 final size:15
Alignment explanation
Indices: 72405160--72405215 Score: 58
Period size: 17 Copynumber: 3.5 Consensus size: 15
72405150 TCATCAAATT
72405160 AACTCTAAAACCCTA
1 AACTCTAAAACCCTA
*
72405175 AACTCTTAAACCCCTA
1 AACTC-TAAAACCCTA
*
72405191 AACCTAATAAAACCCTA
1 AA-CT-CTAAAACCCTA
*
72405208 AACACTAA
1 AACTCTAA
72405216 TCTATAACCC
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
15 8 0.24
16 12 0.36
17 13 0.39
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (15 bp):
AACTCTAAAACCCTA
Found at i:72405206 original size:17 final size:18
Alignment explanation
Indices: 72405165--72405216 Score: 65
Period size: 16 Copynumber: 3.1 Consensus size: 18
72405155 AAATTAACTC
*
72405165 TAAAACCCTAAACTCT--
1 TAAAACCCTAAACACTAA
*
72405181 TAAACCCCTAAAC-CTAA
1 TAAAACCCTAAACACTAA
72405198 TAAAACCCTAAACACTAA
1 TAAAACCCTAAACACTAA
72405216 T
1 T
72405217 CTATAACCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 2 0.06
16 12 0.39
17 12 0.39
18 5 0.16
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (18 bp):
TAAAACCCTAAACACTAA
Found at i:72405409 original size:15 final size:15
Alignment explanation
Indices: 72405377--72405420 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
72405367 ATATTTAAGA
* *
72405377 TTTAAGG-TCTATGA
1 TTTAAGGTTTTATGG
72405391 TTTAAGGTTTTATGG
1 TTTAAGGTTTTATGG
*
72405406 TTTAAGGTTTAATGG
1 TTTAAGGTTTTATGG
72405421 CCATGGGTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 7 0.27
15 19 0.73
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (15 bp):
TTTAAGGTTTTATGG
Found at i:72405416 original size:14 final size:14
Alignment explanation
Indices: 72405370--72405416 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
72405360 GGGTTTAATA
*
72405370 TTTAAGATTTAAGG
1 TTTATGATTTAAGG
*
72405384 TCTATGATTTAAGG
1 TTTATGATTTAAGG
*
72405398 TTTTATGGTTTAAGG
1 -TTTATGATTTAAGG
72405413 TTTA
1 TTTA
72405417 ATGGCCATGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.28, C:0.02, G:0.21, T:0.49
Consensus pattern (14 bp):
TTTATGATTTAAGG
Found at i:72405869 original size:19 final size:20
Alignment explanation
Indices: 72405833--72405877 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
72405823 ATATTAGATT
72405833 TAAAAAAATTGATAAATAAA
1 TAAAAAAATTGATAAATAAA
*
72405853 TAAAAACATTGAT-AATAAA
1 TAAAAAAATTGATAAATAAA
72405872 TAAAAA
1 TAAAAA
72405878 TAAAATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.24
Consensus pattern (20 bp):
TAAAAAAATTGATAAATAAA
Found at i:72405880 original size:6 final size:6
Alignment explanation
Indices: 72405864--72405897 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
72405854 AAAAACATTG
72405864 ATAATAA ATAAAA ATAAAA TATAAAA ATAAAA AT
1 ATAA-AA ATAAAA ATAAAA -ATAAAA ATAAAA AT
72405898 GTATAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.62
7 10 0.38
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (6 bp):
ATAAAA
Found at i:72405887 original size:13 final size:13
Alignment explanation
Indices: 72405871--72405895 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72405861 TTGATAATAA
72405871 ATAAAAATAAAAT
1 ATAAAAATAAAAT
72405884 ATAAAAATAAAA
1 ATAAAAATAAAA
72405896 ATGTATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
ATAAAAATAAAAT
Found at i:72406146 original size:6 final size:6
Alignment explanation
Indices: 72406130--72406160 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
72406120 ACCCATACGA
*
72406130 TCCCTT CCCCTT TCCCTT TCCCTT TCCCTT T
1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
72406161 GGTTTTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (6 bp):
TCCCTT
Found at i:72408383 original size:22 final size:23
Alignment explanation
Indices: 72408332--72408384 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
72408322 AGAAAACCAT
72408332 TTTAT-GTGTTAAATACTGAAAA
1 TTTATGGTGTTAAATACTGAAAA
* *
72408354 TTTA-GGTGTTAAATGCTG-CAA
1 TTTATGGTGTTAAATACTGAAAA
72408375 TTTATGGTGT
1 TTTATGGTGT
72408385 CTGAAAGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 6 0.22
22 21 0.78
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (23 bp):
TTTATGGTGTTAAATACTGAAAA
Found at i:72410200 original size:43 final size:43
Alignment explanation
Indices: 72410139--72410411 Score: 284
Period size: 43 Copynumber: 6.4 Consensus size: 43
72410129 TTTTTGAAGT
* *
72410139 TCATGATT-TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAG
1 TCATG-TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
* * *
72410182 TCATGTTCTTTAGTGGCGTTTGTGGGAAAAGTGTCGCTAAAGG
1 TCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
* *
72410225 TCATGATT-TTTAGCGGCGTTTGTGGGAAAAGCGTCGTTAAAGG
1 TCATG-TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
* * *
72410268 TCATGATT-TTTAGCGGCGTTTTTGGGAAAAACGCCACTAAAGG
1 TCATG-TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
* * * **
72410311 TCGTGGTCTTTAGTGGCGTTT-TTTGAAAAGCGCCGCTAAAGG
1 TCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
* * *** * *
72410353 TCATGGTCTTTACCGGCGTTTGTAAAAAAAGCACCGCTAAAAG
1 TCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
*
72410396 TCATGGTCTTTAGCGG
1 TCATGTTCTTTAGCGG
72410412 TCTTTTTTTA
Statistics
Matches: 197, Mismatches: 29, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
42 38 0.19
43 157 0.80
44 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (43 bp):
TCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
Found at i:72415678 original size:28 final size:28
Alignment explanation
Indices: 72415615--72415737 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
72415605 ATATTAAGTC
*
72415615 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72415642 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72415670 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72415698 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72415727 CGCACACTTAG
1 CGCACACTTAG
72415738 CGCCAATCTC
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 21 0.25
28 48 0.56
29 16 0.19
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72418778 original size:45 final size:45
Alignment explanation
Indices: 72418713--72418800 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
72418703 CATCGTACAG
* * *
72418713 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGAGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
72418758 TACTATTCGAGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGA
1 TACTATTCGAGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
72418801 AATGATATTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGAGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:72418985 original size:20 final size:20
Alignment explanation
Indices: 72418957--72418994 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72418947 TGATTTGAAT
*
72418957 TGAATCATAAGTGTATAATG
1 TGAAACATAAGTGTATAATG
*
72418977 TGAAACATATGTGTATAA
1 TGAAACATAAGTGTATAA
72418995 ATGTTATAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.05, G:0.18, T:0.34
Consensus pattern (20 bp):
TGAAACATAAGTGTATAATG
Found at i:72421954 original size:68 final size:64
Alignment explanation
Indices: 72421838--72422096 Score: 213
Period size: 68 Copynumber: 3.9 Consensus size: 64
72421828 TGGATGATGC
* ** * *
72421838 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTA
1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGCACACCATGTAG-ACAAGAGAGCTA
72421901 CG
63 CG
*
72421903 AGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGCACACCATGTAGACAAGAGAGCT
1 AG--A-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGCACACCATGTAGACAAGAGAGCT
72421968 ACG
62 ACG
* * * * * * *
72421971 GGATATATGTAGCTAGGTCGAATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGCACACCATGTAGACAAGAGAGCTA
72422036 CG
63 CG
* * * **
72422038 AGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 AGATATA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGCACACCATGTAG-ACAAGAGAGC
72422097 CGAACTATAT
Statistics
Matches: 158, Mismatches: 25, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 24 0.15
65 5 0.03
66 21 0.13
67 34 0.22
68 53 0.34
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGCACACCATGTAGACAAGAGAGCTACG
Found at i:72422463 original size:309 final size:310
Alignment explanation
Indices: 72421903--72422520 Score: 1139
Period size: 309 Copynumber: 2.0 Consensus size: 310
72421893 GAGAGCTACG
72421903 AGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGCACACCATGTAGACAAGAGAGCT
1 AGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGCACACCATGTAGACAAGAGAGCT
72421968 ACGGGATATATGTAGCTAGGTCGAATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAG
66 ACGGGATATATGTAGCTAGGTCGAATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAG
72422033 CTACGAGATAAACTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCC
131 CTACGAGATAAACTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCC
72422098 GAACTATATGATGGGTGGAGCTATGTGCTAAAACCACCAAGTATCGAAGATTGATCCGAAGTGTT
196 GAACTATATGATGGGTGGAGCTATGTGCTAAAACCACCAAGTATCGAAGATTGATCCGAAGTGTT
*
72422163 CAACGGGAGACTCTCTATGTATTGCTTTGTGAGTTTTGTGATGAATAAGA
261 CAACAGGAGACTCTCTATGTATTGCTTTGTGAGTTTTGTGATGAATAAGA
*
72422213 AGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCT
1 AGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGCACACCATGTAGACAAGAGAGCT
* *
72422278 ACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCC-GGTGAAGGACACCATGTAGATAAGAGAG
66 ACGGGATATATGTAGCTAGGTCGAATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAG
* * *
72422342 CTACGAGATAAATTGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGTGTACAAGAGAGTC
131 CTACGAGATAAACTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCC
* * *
72422407 GAACTATATGATGGGTGGAGCTATGTGTTGAAACCACCAAGTATCGAGGATTGATCCGAAGTGTT
196 GAACTATATGATGGGTGGAGCTATGTGCTAAAACCACCAAGTATCGAAGATTGATCCGAAGTGTT
72422472 CAACAGGAGACTCTCTATGTATTGCTTTGTGAGTTTTGTGATGAATAAG
261 CAACAGGAGACTCTCTATGTATTGCTTTGTGAGTTTTGTGATGAATAAG
72422521 TGCAGGAACT
Statistics
Matches: 298, Mismatches: 10, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
309 199 0.67
310 99 0.33
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (310 bp):
AGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGCACACCATGTAGACAAGAGAGCT
ACGGGATATATGTAGCTAGGTCGAATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAG
CTACGAGATAAACTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCC
GAACTATATGATGGGTGGAGCTATGTGCTAAAACCACCAAGTATCGAAGATTGATCCGAAGTGTT
CAACAGGAGACTCTCTATGTATTGCTTTGTGAGTTTTGTGATGAATAAGA
Found at i:72430256 original size:45 final size:44
Alignment explanation
Indices: 72430192--72430353 Score: 186
Period size: 45 Copynumber: 3.7 Consensus size: 44
72430182 TATCGTACAG
*
72430192 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC-GTGAGA
*
72430237 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGTTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCG-TGAGA
* * * * *
72430282 TACTATTCGAGCCTTCGAACCTAGCAAGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC-GTGAGA
* *
72430327 TGA-TA-TC-GGACTTCGAGCCTAGCAGGC
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGC
72430354 GAAATACCGG
Statistics
Matches: 102, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
43 16 0.16
44 3 0.03
45 81 0.79
46 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (44 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGTGAGA
Found at i:72433926 original size:17 final size:18
Alignment explanation
Indices: 72433879--72433927 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
72433869 TTTTAAATTT
* *
72433879 TGGGTCCACATGCCCGTG
1 TGGGCCCACATGCCCATG
*
72433897 TGGGCCAACATGCCCATG
1 TGGGCCCACATGCCCATG
*
72433915 T-TGCCCACATGCC
1 TGGGCCCACATGCC
72433928 TAGATTGTCC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.16, C:0.37, G:0.27, T:0.20
Consensus pattern (18 bp):
TGGGCCCACATGCCCATG
Found at i:72435011 original size:13 final size:13
Alignment explanation
Indices: 72434995--72435019 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72434985 ACCAAACCCA
72434995 ACCCAACCCAATT
1 ACCCAACCCAATT
72435008 ACCCAACCCAAT
1 ACCCAACCCAAT
72435020 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Done.