Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 218 of 284
Found at i:72435057 original size:5 final size:6
Alignment explanation
Indices: 72435044--72435090 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
72435034 ATAATTTAAT
* *
72435044 AAATAA AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
72435091 ACATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:72435076 original size:20 final size:20
Alignment explanation
Indices: 72435047--72435085 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
72435037 ATTTAATAAA
72435047 TAAAAATAAAAATAAAAATC
1 TAAAAATAAAAATAAAAATC
* *
72435067 TAAAACTAAAACTAAAAAT
1 TAAAAATAAAAATAAAAAT
72435086 AAAAAACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAATC
Found at i:72435124 original size:9 final size:9
Alignment explanation
Indices: 72435110--72435186 Score: 109
Period size: 9 Copynumber: 8.6 Consensus size: 9
72435100 TTTATACAAA
72435110 TAATTCGGT
1 TAATTCGGT
72435119 TAATTCGGT
1 TAATTCGGT
*
72435128 TAATTCGGG
1 TAATTCGGT
* *
72435137 CAATTCGGG
1 TAATTCGGT
72435146 TAATTCGGT
1 TAATTCGGT
*
72435155 TAATTCGAT
1 TAATTCGGT
*
72435164 TAATTCAGT
1 TAATTCGGT
72435173 TAATTCGGT
1 TAATTCGGT
72435182 TAATT
1 TAATT
72435187 TTATACTTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.42
Consensus pattern (9 bp):
TAATTCGGT
Found at i:72446805 original size:54 final size:54
Alignment explanation
Indices: 72446747--72447144 Score: 541
Period size: 54 Copynumber: 7.4 Consensus size: 54
72446737 AAAGTACTCC
*
72446747 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
* * * * ** * *
72446801 CGATTTATAGAATTACCATTTTACCCTTAATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
* * *
72446855 CGATTTATAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
* * * *
72446909 CGATTTATAGAATTACTGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
*
72446963 CGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
*
72447017 CGATTTACAGAATTACCGTTTTACCCTCGATTTGTA-A-AATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTC-AGTT-TACAGAATTACTGTTTTACCCT
* * * * *
72447071 TGATTTACAGAATTACTGGTTTACCCTCAATTTACAAAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACT-GTTTTACCCT
72447125 CGATTTACAGAATTACCGTT
1 CGATTTACAGAATTACCGTT
72447145 AATTGTGAAA
Statistics
Matches: 310, Mismatches: 29, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
52 2 0.01
53 5 0.02
54 297 0.96
55 4 0.01
56 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (54 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
Found at i:72447144 original size:27 final size:27
Alignment explanation
Indices: 72446747--72447140 Score: 474
Period size: 27 Copynumber: 14.6 Consensus size: 27
72446737 AAAGTACTCC
*
72446747 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
72446774 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* **
72446801 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** ** * *
72446828 TAATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
72446855 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
72446882 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
*
72446909 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
72446936 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
72446963 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
72446990 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
*
72447017 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** *
72447044 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
72447071 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
72447098 CAATTTACAAAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
72447125 CGATTTACAGAATTAC
1 CGATTTACAGAATTAC
72447141 CGTTAATTGT
Statistics
Matches: 322, Mismatches: 35, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.02
27 313 0.97
28 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:72447191 original size:27 final size:27
Alignment explanation
Indices: 72447161--72447294 Score: 160
Period size: 27 Copynumber: 5.0 Consensus size: 27
72447151 GAAATTACTA
* * *
72447161 AAATACCCCTGTAGGGTAGAATTTCTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
72447188 AAATACCTTTATAGGATAGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
72447215 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
72447242 AAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
72447269 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
72447295 ATTTTGCCCC
Statistics
Matches: 89, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:72447235 original size:54 final size:54
Alignment explanation
Indices: 72447153--72447292 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
72447143 TTAATTGTGA
* *
72447153 AATTACTAAAATACCCCTGTAGGGTAGAATT-TCTGAAATACCTTTATAGGATAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATC-GAAATACCCTTATAGGATAG
* *
72447207 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGATAG
* * * * *
72447261 AATTACCGAGATACCCTTGTGGGGTAAAATTA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTA
72447293 CCATTTTGCC
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
54 74 0.97
55 2 0.03
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGATAG
Found at i:72447531 original size:27 final size:26
Alignment explanation
Indices: 72447493--72447575 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
72447483 CGGAGGAAGC
72447493 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
72447520 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * **
72447546 GTATTTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
72447573 GTT
1 GTT
72447576 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:72447698 original size:22 final size:22
Alignment explanation
Indices: 72447670--72447721 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
72447660 TTAATGGCTC
72447670 TGTGCCAACCTAAATATGACTT
1 TGTGCCAACCTAAATATGACTT
* * * * *
72447692 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGACTT
72447714 TGTGCCAA
1 TGTGCCAA
72447722 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGACTT
Found at i:72447916 original size:27 final size:27
Alignment explanation
Indices: 72447886--72447959 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
72447876 TAGGTGGGTT
* *
72447886 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGACTC
72447913 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
** *
72447940 TATCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
72447960 CAACCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGACTC
Found at i:72448087 original size:6 final size:6
Alignment explanation
Indices: 72448077--72448154 Score: 79
Period size: 6 Copynumber: 12.8 Consensus size: 6
72448067 TTGTATTCAC
* * *
72448077 ATTCTG GTTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
72448126 ATTCTG -TTACTG ATTCTG ATTTTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
72448155 CATTTTGGTT
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
5 3 0.05
6 51 0.86
7 4 0.07
8 1 0.02
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:72448112 original size:31 final size:30
Alignment explanation
Indices: 72448077--72448154 Score: 111
Period size: 31 Copynumber: 2.6 Consensus size: 30
72448067 TTGTATTCAC
*
72448077 ATTCTGGTTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGATTCTGTCA-CTA
* *
72448108 ATTCTGATTCTGATTCTGATTCTGTTACTG
1 ATTCTGATTCTGATTCTGATTCTGTCACTA
*
72448138 ATTCTGATTTTGATTCT
1 ATTCTGATTCTGATTCT
72448155 CATTTTGGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 18 0.42
31 25 0.58
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGATTCTGTCACTA
Found at i:72448962 original size:73 final size:73
Alignment explanation
Indices: 72448819--72449168 Score: 623
Period size: 73 Copynumber: 4.8 Consensus size: 73
72448809 GGGTGTTACA
* * *
72448819 CTGAGGCTCAACTCACATCTCTCAATATGAGTTGATTTTTTGAAAAATAGGAATTAAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGGAATTAAAAATACCT
72448884 CAGCATGAC
65 CAGCATGAC
72448893 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAATACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAATACCTC
72448958 AGCATGAC
66 AGCATGAC
72448966 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAATACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAATACCTC
72449031 AGCATGAC
66 AGCATGAC
72449039 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAATACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAATACCTC
72449104 AGCATGAC
66 AGCATGAC
* * *
72449112 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATCTTG-AAAACA-GAAATAAAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAA
72449169 CATCAAAATA
Statistics
Matches: 270, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
71 9 0.03
72 6 0.02
73 222 0.82
74 33 0.12
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (73 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTAAAAATACCTC
AGCATGAC
Found at i:72450691 original size:46 final size:46
Alignment explanation
Indices: 72450641--72450816 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
72450631 TGGTTGAGCA
*
72450641 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72450687 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
72450732 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72450780 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72450817 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72450797 original size:93 final size:93
Alignment explanation
Indices: 72450638--72450809 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
72450628 GGATGGTTGA
*
72450638 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
72450703 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
72450731 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
72450796 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
72450810 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72464859 original size:27 final size:26
Alignment explanation
Indices: 72464814--72465088 Score: 101
Period size: 27 Copynumber: 10.3 Consensus size: 26
72464804 CAAATTAGTG
* *
72464814 AAATACCCCC-AGTTGTAAAATTACC
1 AAATACCCCCGATTTATAAAATTACC
* *
72464839 AACGTACCCCCGATTTATAAAACTACCC
1 AA-ATACCCCCGATTTATAAAATTA-CC
* * *
72464867 AAATATCCTCGATTTATAGAATTACC
1 AAATACCCCCGATTTATAAAATTACC
*** * * *
72464893 GTTTACCCTCGATTTACAGAATTACC
1 AAATACCCCCGATTTATAAAATTACC
*** * * *
72464919 GTTTTACCCTCGATTTACAAAATTACTA
1 -AAATACCCCCGATTTATAAAATTAC-C
** *
72464947 AAATACCCTTGGTTTA-AAAATTACC
1 AAATACCCCCGATTTATAAAATTACC
** **
72464972 AAAATACCCTTGATCAATAAAATTACC
1 -AAATACCCCCGATTTATAAAATTACC
* * *
72464999 AAA-ACACCCCTGGTTTGTAAAATTACTA
1 AAATAC-CCCC-GATTTATAAAATTAC-C
* *
72465027 AAATA-CCCCTAGTTTGTAAAATTACC
1 AAATACCCCCGA-TTTATAAAATTACC
** * *
72465053 AAAATACCCTTGATTTGTAAAA-TACTA
1 -AAATACCCCCGATTTATAAAATTAC-C
72465080 AAATACCCC
1 AAATACCCC
72465089 TATAAGGTAA
Statistics
Matches: 194, Mismatches: 41, Indels: 29
0.73 0.16 0.11
Matches are distributed among these distances:
25 4 0.02
26 67 0.35
27 112 0.58
28 10 0.05
29 1 0.01
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.30
Consensus pattern (26 bp):
AAATACCCCCGATTTATAAAATTACC
Found at i:72464913 original size:26 final size:27
Alignment explanation
Indices: 72464873--72464944 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
72464863 ACCCAAATAT
*
72464873 CCTCGATTTATAGAATTACCG-TTTAC
1 CCTCGATTTACAGAATTACCGTTTTAC
72464899 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCGTTTTAC
*
72464926 CCTCGATTTACAAAATTAC
1 CCTCGATTTACAGAATTAC
72464945 TAAAATACCC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.36
Consensus pattern (27 bp):
CCTCGATTTACAGAATTACCGTTTTAC
Found at i:72464980 original size:53 final size:54
Alignment explanation
Indices: 72464923--72465087 Score: 192
Period size: 54 Copynumber: 3.1 Consensus size: 54
72464913 ATTACCGTTT
* * * *
72464923 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTT-AAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAA
* ** * *
72464976 TACCCTTGATCAATAAAATTACCAAAACACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAA
* * *
72465030 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAA-TACTAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAA
72465083 TACCC
1 TACCC
72465088 CTATAAGGTA
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
53 46 0.49
54 47 0.51
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.30
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAA
Found at i:72465089 original size:27 final size:28
Alignment explanation
Indices: 72464937--72465116 Score: 171
Period size: 27 Copynumber: 6.7 Consensus size: 28
72464927 CTCGATTTAC
* *
72464937 AAAATTACTAAAATA-CCCTTGGTTT-A
1 AAAATTACTAAAATACCCCTTGATTTGT
* ***
72464963 AAAATTACCAAAATA-CCCTTGATCAAT
1 AAAATTACTAAAATACCCCTTGATTTGT
* * *
72464990 AAAATTACCAAAACACCCC-TGGTTTGT
1 AAAATTACTAAAATACCCCTTGATTTGT
*
72465017 AAAATTACTAAAATACCCCTAG-TTTGT
1 AAAATTACTAAAATACCCCTTGATTTGT
*
72465044 AAAATTACCAAAATA-CCCTTGATTTGT
1 AAAATTACTAAAATACCCCTTGATTTGT
**
72465071 AAAA-TACTAAAATACCCC-T-ATAAGGT
1 AAAATTACTAAAATACCCCTTGAT-TTGT
72465097 AAAATTACTAAAATACCCCT
1 AAAATTACTAAAATACCCCT
72465117 GTAGGGTAGA
Statistics
Matches: 128, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
25 2 0.02
26 42 0.33
27 80 0.62
28 4 0.03
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.29
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCTTGATTTGT
Found at i:72465099 original size:80 final size:80
Alignment explanation
Indices: 72464937--72465116 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 80
72464927 CTCGATTTAC
* *
72464937 AAAATTACTAAAATACCCTTGGTTTAAAAATTACCAAAATACCCTTGATCAATAAAATTACCAAA
1 AAAATTACTAAAATACCCCTAGTTTAAAAATTACCAAAATACCCTTGATCAATAAAATTACCAAA
* **
72465002 ACACCCCTGGTTTGT
66 ACACCCCTGATAGGT
* *** *
72465017 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAA-TACTAA
1 AAAATTACTAAAATACCCCTAGTTT-AAAAATTACCAAAATACCCTTGATCAATAAAATTACCAA
*
72465081 AATACCCCT-ATAAGGT
65 AACACCCCTGAT-AGGT
72465097 AAAATTACTAAAATACCCCT
1 AAAATTACTAAAATACCCCT
72465117 GTAGGGTAGA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 58 0.67
81 28 0.32
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCCTAGTTTAAAAATTACCAAAATACCCTTGATCAATAAAATTACCAAA
ACACCCCTGATAGGT
Found at i:72465102 original size:53 final size:53
Alignment explanation
Indices: 72464937--72465114 Score: 209
Period size: 53 Copynumber: 3.3 Consensus size: 53
72464927 CTCGATTTAC
* * * *
72464937 AAAATTACTAAAATACCCTTGGTTT-AAAAATTACCAAAATACCCTTGATCAA-T
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCT-AT-AAGT
* * **
72464990 AAAATTACCAAAACACCCCTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTA-TAAGT
*
72465044 AAAATTACCAAAATACCCTTGATTTGTAAAA-TACTAAAATACCCCTATAAGGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTATAA-GT
*
72465097 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
72465115 CTGTAGGGTA
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
52 1 0.01
53 58 0.54
54 48 0.45
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTATAAGT
Found at i:72465124 original size:27 final size:27
Alignment explanation
Indices: 72464989--72465320 Score: 280
Period size: 27 Copynumber: 12.3 Consensus size: 27
72464979 CCTTGATCAA
* * **
72464989 TAAAATTACCAAAACACCCCTGGT-TTG
1 TAAAATTACTAAAATACCCCT-GTAGGG
**
72465016 TAAAATTACTAAAATACCCCTAGT-TTG
1 TAAAATTACTAAAATACCCCT-GTAGGG
* * **
72465043 TAAAATTACCAAAATACCCTTG-ATTTG
1 TAAAATTACTAAAATACCCCTGTA-GGG
* *
72465070 TAAAA-TACTAAAATACCCCTATAAGG
1 TAAAATTACTAAAATACCCCTGTAGGG
72465096 TAAAATTACTAAAATACCCCTGTAGGG
1 TAAAATTACTAAAATACCCCTGTAGGG
* **
72465123 TAGAATTACCGAAATACCCCTGTAGGG
1 TAAAATTACTAAAATACCCCTGTAGGG
* *
72465150 TAGAATTACTAAAATAACCCTGTAGGG
1 TAAAATTACTAAAATACCCCTGTAGGG
** **
72465177 TTGAATTACCGAAATACCCCTGTAGGG
1 TAAAATTACTAAAATACCCCTGTAGGG
* *
72465204 TAGAATTACTGAAATACCCCTGTAGGG
1 TAAAATTACTAAAATACCCCTGTAGGG
* * *
72465231 TAGAATTACAAAAATACCCTTGTAGGG
1 TAAAATTACTAAAATACCCCTGTAGGG
*
72465258 TAGAAA-TA-TCGAAATACCCCTGTAGGG
1 TA-AAATTACT-AAAATACCCCTGTAGGG
* ** * * *
72465285 TAGAATTACCGAGATACCCTTGTGGGG
1 TAAAATTACTAAAATACCCCTGTAGGG
72465312 TAAAATTAC
1 TAAAATTAC
72465321 CATTTTGCCC
Statistics
Matches: 260, Mismatches: 37, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
26 22 0.08
27 236 0.91
28 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.27
Consensus pattern (27 bp):
TAAAATTACTAAAATACCCCTGTAGGG
Found at i:72465321 original size:27 final size:27
Alignment explanation
Indices: 72465080--72465321 Score: 313
Period size: 27 Copynumber: 9.0 Consensus size: 27
72465070 TAAAATACTA
* * * **
72465080 AAATACCCCTATAAGGTAAAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
72465107 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
72465134 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
72465161 AAATAACCCTGTAGGGTTGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
72465188 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
72465215 AAATACCCCTGTAGGGTAGAATTACAA
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
72465242 AAATACCCTTGTAGGGTAGAAATATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
72465269 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
72465296 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
72465322 ATTTTGCCCC
Statistics
Matches: 187, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 187 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:72465552 original size:25 final size:25
Alignment explanation
Indices: 72465524--72465592 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
72465514 AGGAAGTGCT
* *
72465524 AAAAGGGCTATGCCTCAGTTTACCG
1 AAAAGGGCTATGCCCCAGTTTACCA
* *
72465549 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCA
72465574 AAAA-GGC-ATTGCCCCAGTT
1 AAAAGGGCTA-TGCCCCAGTT
72465593 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
24 13 0.34
25 25 0.66
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTACCA
Found at i:72465604 original size:24 final size:25
Alignment explanation
Indices: 72465534--72465604 Score: 76
Period size: 24 Copynumber: 2.9 Consensus size: 25
72465524 AAAAGGGCTA
* * *
72465534 TGCCTCAGTTTACCGAAAAG-GGCTT
1 TGCCCCAGTTTATC-AAAAGAGGCAT
72465559 TGCCCCAGTTTATCAAAA-AGGCAT
1 TGCCCCAGTTTATCAAAAGAGGCAT
*
72465583 TGCCCCAG-TTATTAAAAGAGGC
1 TGCCCCAGTTTATCAAAAGAGGC
72465605 TAGGCCTCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 8 0.20
24 20 0.50
25 12 0.30
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (25 bp):
TGCCCCAGTTTATCAAAAGAGGCAT
Found at i:72466577 original size:41 final size:41
Alignment explanation
Indices: 72466464--72466745 Score: 297
Period size: 41 Copynumber: 6.8 Consensus size: 41
72466454 TACATAAATA
* *
72466464 GTAATAATGTTAGAAATATACTATATATAATAT-T-TGAAAT
1 GTAATAATGTTAGAAATATACTATACATAATATATAT-ACAT
* * *
72466504 ATACATATATATTTGAAATATACTATACATAATATATATACAT
1 GTA-ATA-ATGTTAGAAATATACTATACATAATATATATACAT
* *
72466547 GTAATAATGTTAGAAATATACTATATATAATAT-T-TGAAAT
1 GTAATAATGTTAGAAATATACTATACATAATATATAT-ACAT
* * *
72466587 ATACATATATATTTGAAATATACTATACATAATATATATACAT
1 GTA-ATA-ATGTTAGAAATATACTATACATAATATATATACAT
* *
72466630 GTAATAATGTTAGAAATATACTATATATAATAT-T-TGAAAT
1 GTAATAATGTTAGAAATATACTATACATAATATATAT-ACAT
* * *
72466670 ATACATATATATTTGAAATATACTATACATAATATATATACAT
1 GTA-ATA-ATGTTAGAAATATACTATACATAATATATATACAT
*
72466713 GTAATAATGTTAGAAATATACTATATATAATAT
1 GTAATAATGTTAGAAATATACTATACATAATAT
72466746 TTGAAATATA
Statistics
Matches: 199, Mismatches: 29, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
39 2 0.01
40 14 0.07
41 81 0.41
42 81 0.41
43 18 0.09
44 3 0.02
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (41 bp):
GTAATAATGTTAGAAATATACTATACATAATATATATACAT
Found at i:72466603 original size:83 final size:83
Alignment explanation
Indices: 72466464--72466759 Score: 592
Period size: 83 Copynumber: 3.6 Consensus size: 83
72466454 TACATAAATA
72466464 GTAATAATGTTAGAAATATACTATATATAATATTTGAAATATACATATATATTTGAAATATACTA
1 GTAATAATGTTAGAAATATACTATATATAATATTTGAAATATACATATATATTTGAAATATACTA
72466529 TACATAATATATATACAT
66 TACATAATATATATACAT
72466547 GTAATAATGTTAGAAATATACTATATATAATATTTGAAATATACATATATATTTGAAATATACTA
1 GTAATAATGTTAGAAATATACTATATATAATATTTGAAATATACATATATATTTGAAATATACTA
72466612 TACATAATATATATACAT
66 TACATAATATATATACAT
72466630 GTAATAATGTTAGAAATATACTATATATAATATTTGAAATATACATATATATTTGAAATATACTA
1 GTAATAATGTTAGAAATATACTATATATAATATTTGAAATATACATATATATTTGAAATATACTA
72466695 TACATAATATATATACAT
66 TACATAATATATATACAT
72466713 GTAATAATGTTAGAAATATACTATATATAATATTTGAAATATACATA
1 GTAATAATGTTAGAAATATACTATATATAATATTTGAAATATACATA
72466760 AAGTAGTAAA
Statistics
Matches: 213, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 213 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (83 bp):
GTAATAATGTTAGAAATATACTATATATAATATTTGAAATATACATATATATTTGAAATATACTA
TACATAATATATATACAT
Found at i:72466787 original size:19 final size:20
Alignment explanation
Indices: 72466749--72466787 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
72466739 ATAATATTTG
*
72466749 AAATATACATAAAGTAGTAA
1 AAATATACATAAACTAGTAA
*
72466769 AAATATATAT-AACTAGTAA
1 AAATATACATAAACTAGTAA
72466788 TGTTAAAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.28
Consensus pattern (20 bp):
AAATATACATAAACTAGTAA
Found at i:72467086 original size:17 final size:16
Alignment explanation
Indices: 72467064--72467101 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
72467054 ATATATACCT
*
72467064 ATATATATATTAAAGAC
1 ATATATATAATAAA-AC
72467081 ATATATATAATAAAAC
1 ATATATATAATAAAAC
72467097 ATATA
1 ATATA
72467102 CTTAAGATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (16 bp):
ATATATATAATAAAAC
Found at i:72467186 original size:16 final size:16
Alignment explanation
Indices: 72467149--72467201 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
72467139 CATATACATG
*
72467149 AAATAATATAAAAA-AC
1 AAATAATA-AAAAATAA
* * *
72467165 ATATAATTAATAATAA
1 AAATAATAAAAAATAA
72467181 AAATAATAAAAAATAA
1 AAATAATAAAAAATAA
72467197 AAATA
1 AAATA
72467202 TACATGATGT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
15 4 0.14
16 25 0.86
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (16 bp):
AAATAATAAAAAATAA
Found at i:72468493 original size:27 final size:28
Alignment explanation
Indices: 72468436--72468525 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
72468426 GTGACAGAGT
* * *
72468436 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ATAGATATTATGTGGCAGGGC
*
72468465 CACCAGAATAGATA-TATGTGGTAGGGC
1 CACCAGAATAGATATTATGTGGCAGGGC
**
72468492 CACCAGAATAGATAATT-TGTGGCATAGC
1 CACCAGAATAGAT-ATTATGTGGCAGGGC
72468520 CACCAG
1 CACCAG
72468526 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 21 0.40
29 8 0.15
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.23
Consensus pattern (28 bp):
CACCAGAATAGATATTATGTGGCAGGGC
Found at i:72468718 original size:27 final size:28
Alignment explanation
Indices: 72468619--72468710 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
72468609 AAATTAACCC
* *
72468619 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
72468647 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
72468675 TAGGGGTATAATGGTAATTTTG-ATATA
1 TAGGGGTATAATGGTAATTTTGCATACA
72468702 TAGGGGTAT
1 TAGGGGTAT
72468711 TCTAGTAAAT
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
27 13 0.21
28 48 0.79
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.36
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:72475094 original size:27 final size:28
Alignment explanation
Indices: 72475037--72475126 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
72475027 GTGACAGAGT
* * *
72475037 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ATAGATATTATGTGGCAGGGC
*
72475066 CACCAGAATAGATA-TATGTGGTAGGGC
1 CACCAGAATAGATATTATGTGGCAGGGC
**
72475093 CACCAGAATAGATAATT-TGTGGCATAGC
1 CACCAGAATAGAT-ATTATGTGGCAGGGC
72475121 CACCAG
1 CACCAG
72475127 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 21 0.40
29 8 0.15
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.23
Consensus pattern (28 bp):
CACCAGAATAGATATTATGTGGCAGGGC
Found at i:72477037 original size:21 final size:21
Alignment explanation
Indices: 72476989--72477053 Score: 67
Period size: 21 Copynumber: 2.9 Consensus size: 21
72476979 TAAATACTAT
*
72476989 TAATATTAAAAAAATAACTTATAAA
1 TAATATTAAAAAAAT-A--TAT-TA
* *
72477014 TAATATTACATAAATATATTA
1 TAATATTAAAAAAATATATTA
72477035 TAATATTAAAAAAATATAT
1 TAATATTAAAAAAATATAT
72477054 ACGTCATATA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 18 0.51
22 3 0.09
24 1 0.03
25 13 0.37
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (21 bp):
TAATATTAAAAAAATATATTA
Found at i:72477140 original size:15 final size:16
Alignment explanation
Indices: 72477105--72477146 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
72477095 AATAAATTGA
*
72477105 TAATAAATAATAAGAG
1 TAATAAATAATAACAG
*
72477121 GAATAAA-AATAACAG
1 TAATAAATAATAACAG
72477136 TAATAATATAA
1 TAATAA-ATAA
72477147 ATAATAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 12 0.57
16 7 0.33
17 2 0.10
ACGTcount: A:0.64, C:0.02, G:0.10, T:0.24
Consensus pattern (16 bp):
TAATAAATAATAACAG
Found at i:72478559 original size:42 final size:43
Alignment explanation
Indices: 72478509--72478672 Score: 206
Period size: 42 Copynumber: 3.7 Consensus size: 43
72478499 CTTCATTTCC
** * *
72478509 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
*
72478552 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATAT-A
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
*
72478593 TCGATGCCATAGCCCAGCTATGGTCTTACACATAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCAC--AT---A-A
72478642 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
72478673 GAATCACATA
Statistics
Matches: 106, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
41 2 0.02
42 69 0.65
43 1 0.01
44 2 0.02
49 32 0.30
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (43 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
Found at i:72478652 original size:49 final size:48
Alignment explanation
Indices: 72478592--72478762 Score: 179
Period size: 47 Copynumber: 3.6 Consensus size: 48
72478582 ATATTCATAT
*
72478592 ATCGATGCCATAGCCCAGCTATGGTCTTACACATAATCACATATCACA
1 ATCGATGCCATAGCCCAGATATGGTCTTACACATAATCACATATCACA
* * *
72478640 TATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCACATATCTCA
1 -ATCGATGCCATAGCCCAGATATGGTCTTACACATAATCACATATCACA
* * * * * * *
72478688 CT-GATGTCATATCCCAGATATGGTCTTATATAGT-AGCATATATCAC-
1 ATCGATGCCATAGCCCAGATATGGTCTTACACA-TAATCACATATCACA
* *
72478734 ACCGATGCCATATCCCAGATATGGTCTTA
1 ATCGATGCCATAGCCCAGATATGGTCTTA
72478763 TACAAAAATC
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 24 0.23
47 35 0.34
48 13 0.12
49 32 0.31
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (48 bp):
ATCGATGCCATAGCCCAGATATGGTCTTACACATAATCACATATCACA
Found at i:72478826 original size:31 final size:31
Alignment explanation
Indices: 72478791--72478970 Score: 261
Period size: 31 Copynumber: 5.8 Consensus size: 31
72478781 CTTGTCACTT
*
72478791 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
72478822 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
72478853 GTAGCAGAAGCTACCACTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* **
72478884 GTAGCCGAAGCTACCACTATTCACTGATTTG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
72478915 GTAGTCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
**
72478946 GTAGCAAAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
72478971 TGTCATTTGT
Statistics
Matches: 130, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 130 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:72478950 original size:93 final size:93
Alignment explanation
Indices: 72478791--72478970 Score: 324
Period size: 93 Copynumber: 1.9 Consensus size: 93
72478781 CTTGTCACTT
72478791 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAGGTA
1 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAGGTA
*
72478856 GCAGAAGCTACCACTTTTCACTGATCAA
66 GCAAAAGCTACCACTTTTCACTGATCAA
** *
72478884 GTAGCCGAAGCTACCACTATTCACTGATTTGGTAGTCGGAGCTACCACTTTTCACTGATCAGGTA
1 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAGGTA
72478949 GCAAAAGCTACCACTTTTCACT
66 GCAAAAGCTACCACTTTTCACT
72478971 TGTCATTTGT
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 83 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (93 bp):
GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTGATCAGGTA
GCAAAAGCTACCACTTTTCACTGATCAA
Found at i:72481128 original size:40 final size:40
Alignment explanation
Indices: 72481073--72481348 Score: 228
Period size: 40 Copynumber: 6.9 Consensus size: 40
72481063 CAATTAGAGT
* * * *
72481073 TACCAGAGTATAAACAGCGGCACGTATGTGTAATCAAAGG
1 TACCAAAGTACAAACAGGGGCACGTATGTGCAATCAAAGG
* * * * **
72481113 TACCAAAGTTCAAACAGGGGTACGTATGTGCATTTAGGGG
1 TACCAAAGTACAAACAGGGGCACGTATGTGCAATCAAAGG
* ** *
72481153 CACTGAAGTACAAACAGGGGCACGTATGTGCAATCAGAGG
1 TACCAAAGTACAAACAGGGGCACGTATGTGCAATCAAAGG
* * * * * * *
72481193 TAACGAAGTACAAATAAGGGCATGTAAGTGCAATCAACGG
1 TACCAAAGTACAAACAGGGGCACGTATGTGCAATCAAAGG
* * * **
72481233 TACCAAAGTACAAATAGGGGCATGTATGTGCAATGAGGGG
1 TACCAAAGTACAAACAGGGGCACGTATGTGCAATCAAAGG
* * * * * **
72481273 TACCGAATTACAAACAGGAGCACATATGTGCAAGCAGGGG
1 TACCAAAGTACAAACAGGGGCACGTATGTGCAATCAAAGG
* * *
72481313 TACCGAAGTAGAAACAGGGGCATGTATGTGCAATCA
1 TACCAAAGTACAAACAGGGGCACGTATGTGCAATCA
72481349 TACAATAATT
Statistics
Matches: 188, Mismatches: 48, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 188 1.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (40 bp):
TACCAAAGTACAAACAGGGGCACGTATGTGCAATCAAAGG
Found at i:72481224 original size:80 final size:79
Alignment explanation
Indices: 72481079--72481348 Score: 261
Period size: 80 Copynumber: 3.4 Consensus size: 79
72481069 GAGTTACCAG
* * * * * * * *
72481079 AGTATAAACAGCGGCACGTATGTGTAATCAAAGGTACCAAAGTTCAAACAGGGGTACGTATGTGC
1 AGTACAAACAGGGGCACGTATGTGCAATCAGAGGTACCGAAGTACAAA-AAGGGCACGTATGTGC
* * * *
72481144 ATTTAGGGGCACTGA
65 AATCAGGGGTACCGA
* * *
72481159 AGTACAAACAGGGGCACGTATGTGCAATCAGAGGTAACGAAGTACAAATAAGGGCATGTAAGTGC
1 AGTACAAACAGGGGCACGTATGTGCAATCAGAGGTACCGAAGTACAAA-AAGGGCACGTATGTGC
** *
72481224 AATCAACGGTACCAA
65 AATCAGGGGTACCGA
* * * * * * *
72481239 AGTACAAATAGGGGCATGTATGTGCAATGAGGGGTACCGAATTACAAACAGGAGCACATATGTGC
1 AGTACAAACAGGGGCACGTATGTGCAATCAGAGGTACCGAAGTACAAAAAGG-GCACGTATGTGC
*
72481304 AAGCAGGGGTACCGA
65 AATCAGGGGTACCGA
* *
72481319 AGTAGAAACAGGGGCATGTATGTGCAATCA
1 AGTACAAACAGGGGCACGTATGTGCAATCA
72481349 TACAATAATT
Statistics
Matches: 153, Mismatches: 36, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
79 3 0.02
80 150 0.98
ACGTcount: A:0.36, C:0.16, G:0.29, T:0.19
Consensus pattern (79 bp):
AGTACAAACAGGGGCACGTATGTGCAATCAGAGGTACCGAAGTACAAAAAGGGCACGTATGTGCA
ATCAGGGGTACCGA
Found at i:72481320 original size:120 final size:120
Alignment explanation
Indices: 72481104--72481348 Score: 319
Period size: 120 Copynumber: 2.0 Consensus size: 120
72481094 ACGTATGTGT
* * * * *
72481104 AATCAAAGGTACCAAAGTTCAAACAGGGGTACGTATGTGCATTTAGGGGCACTGAAGTACAAACA
1 AATCAAAGGTACCAAAGTACAAACAGGGGCACGTATGTGCAATGAGGGGCACCGAAGTACAAACA
* * * *
72481169 GGGGCACGTATGTGCAATCAGAGGTAACGAAGTACAAATAAGGGCATGTAAGTGC
66 GGAGCACATATGTGCAAGCAGAGGTAACGAAGTACAAACAAGGGCATGTAAGTGC
* * * * *
72481224 AATCAACGGTACCAAAGTACAAATAGGGGCATGTATGTGCAATGAGGGGTACCGAATTACAAACA
1 AATCAAAGGTACCAAAGTACAAACAGGGGCACGTATGTGCAATGAGGGGCACCGAAGTACAAACA
* * * * *
72481289 GGAGCACATATGTGCAAGCAGGGGTACCGAAGTAGAAACAGGGGCATGTATGTGC
66 GGAGCACATATGTGCAAGCAGAGGTAACGAAGTACAAACAAGGGCATGTAAGTGC
72481344 AATCA
1 AATCA
72481349 TACAATAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
120 106 1.00
ACGTcount: A:0.37, C:0.16, G:0.29, T:0.18
Consensus pattern (120 bp):
AATCAAAGGTACCAAAGTACAAACAGGGGCACGTATGTGCAATGAGGGGCACCGAAGTACAAACA
GGAGCACATATGTGCAAGCAGAGGTAACGAAGTACAAACAAGGGCATGTAAGTGC
Found at i:72483213 original size:22 final size:22
Alignment explanation
Indices: 72483187--72483231 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
72483177 ATTATGTGTA
72483187 TTAATTCATAATATAA-TTAATT
1 TTAATT-ATAATATAATTTAATT
* *
72483209 TTAATTTTAATCTAATTTAATT
1 TTAATTATAATATAATTTAATT
72483231 T
1 T
72483232 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTATAATATAATTTAATT
Found at i:72486843 original size:23 final size:22
Alignment explanation
Indices: 72486813--72486858 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
72486803 GCTACTAAAA
72486813 CTCTCCTTTCT-TTTCCTCTTTT
1 CTCTCCTTTCTATTTCC-CTTTT
*
72486835 CTCTACCTTTTTATTTCCCTTTT
1 CTCT-CCTTTCTATTTCCCTTTT
72486858 C
1 C
72486859 CCTTTGTCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 12 0.57
24 5 0.24
ACGTcount: A:0.04, C:0.35, G:0.00, T:0.61
Consensus pattern (22 bp):
CTCTCCTTTCTATTTCCCTTTT
Found at i:72491731 original size:20 final size:18
Alignment explanation
Indices: 72491702--72491738 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 18
72491692 GTGATGGATA
72491702 CGGGTTAGGGGTGTTACAC
1 CGGGTTA-GGGTGTTACAC
72491721 CGGGTTTAGGGTGTTACA
1 CGGG-TTAGGGTGTTACA
72491739 ATCCATTTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.16, C:0.14, G:0.41, T:0.30
Consensus pattern (18 bp):
CGGGTTAGGGTGTTACAC
Found at i:72503009 original size:20 final size:20
Alignment explanation
Indices: 72502980--72503017 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72502970 CCAGTTTTAA
* *
72502980 ATTTACATGGACCAAAATTG
1 ATTTAAATGGAACAAAATTG
72503000 ATTTAAATGGAACAAAAT
1 ATTTAAATGGAACAAAAT
72503018 GTTTTATCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (20 bp):
ATTTAAATGGAACAAAATTG
Found at i:72507200 original size:13 final size:13
Alignment explanation
Indices: 72507185--72507247 Score: 67
Period size: 12 Copynumber: 4.8 Consensus size: 13
72507175 GAAAGAGATC
72507185 AAAATAAAAAATCA
1 AAAATAAAAAAT-A
*
72507199 AAATTAAAAAATTA
1 AAAATAAAAAA-TA
**
72507213 AAAA-ATTAAATA
1 AAAATAAAAAATA
72507225 AAAAT-AAAAATA
1 AAAATAAAAAATA
72507237 AAAATAAAAAA
1 AAAATAAAAAA
72507248 AGAAAGAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
12 16 0.40
13 9 0.22
14 14 0.35
15 1 0.03
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (13 bp):
AAAATAAAAAATA
Found at i:72507201 original size:7 final size:7
Alignment explanation
Indices: 72507185--72507247 Score: 56
Period size: 7 Copynumber: 8.6 Consensus size: 7
72507175 GAAAGAGATC
72507185 AAAATAA
1 AAAATAA
*
72507192 AAAATCA
1 AAAATAA
*
72507199 AAATTAA
1 AAAATAA
72507206 AAAATTAA
1 AAAA-TAA
72507214 AAAATTAA
1 AAAA-TAA
*
72507222 ATAAAAATA
1 A-AAATA-A
72507231 AAAAT-A
1 AAAATAA
72507237 AAAATAA
1 AAAATAA
72507244 AAAA
1 AAAA
72507248 AGAAAGAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
6 6 0.13
7 19 0.41
8 16 0.35
9 5 0.11
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (7 bp):
AAAATAA
Found at i:72507206 original size:14 final size:13
Alignment explanation
Indices: 72507182--72507247 Score: 64
Period size: 13 Copynumber: 5.1 Consensus size: 13
72507172 AAAGAAAGAG
72507182 ATCAAAATAAAAA
1 ATCAAAATAAAAA
72507195 ATCAAAATTAAAAA
1 ATCAAAA-TAAAAA
* *
72507209 ATTAAAA-AATTAA
1 ATCAAAATAA-AAA
*
72507222 ATAAAAAT-AAAA
1 ATCAAAATAAAAA
*
72507234 ATAAAAATAAAAA
1 ATCAAAATAAAAA
72507247 A
1 A
72507248 AGAAAGAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
12 12 0.27
13 21 0.47
14 12 0.27
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (13 bp):
ATCAAAATAAAAA
Found at i:72507209 original size:8 final size:8
Alignment explanation
Indices: 72507198--72507222 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
72507188 ATAAAAAATC
72507198 AAAATTAA
1 AAAATTAA
72507206 AAAATTAA
1 AAAATTAA
72507214 AAAATTAA
1 AAAATTAA
72507222 A
1 A
72507223 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAATTAA
Found at i:72507229 original size:6 final size:6
Alignment explanation
Indices: 72507220--72507246 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
72507210 TTAAAAAATT
72507220 AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAA
72507247 AAGAAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:72507257 original size:18 final size:18
Alignment explanation
Indices: 72507220--72507257 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
72507210 TTAAAAAATT
*
72507220 AAATAAAAATAAAAATAA
1 AAATAAAAATAAAAAGAA
72507238 AAATAAAAA-AAGAAAGAA
1 AAATAAAAATAA-AAAGAA
72507256 AA
1 AA
72507258 TGAGAGGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (18 bp):
AAATAAAAATAAAAAGAA
Found at i:72508328 original size:13 final size:13
Alignment explanation
Indices: 72508310--72508334 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72508300 AGCATTAAAA
72508310 AAAAAGATCATTT
1 AAAAAGATCATTT
72508323 AAAAAGATCATT
1 AAAAAGATCATT
72508335 CTTATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (13 bp):
AAAAAGATCATTT
Found at i:72508458 original size:63 final size:64
Alignment explanation
Indices: 72508391--72508550 Score: 205
Period size: 63 Copynumber: 2.5 Consensus size: 64
72508381 CATTCACTTT
* * *
72508391 GATCATAGTATCCTAATTATTTGACATCAGCATCACATCTAGTTTGGAG-ATTTGATTAATTTC
1 GATCATAGAATCCTAATTATTTGACATCAGCATCACATCTAGTTAGGAGTACTTGATTAATTTC
** * * *
72508454 GATCATAGCGTCCTAATTATTTGACATCATCATCACATCTAGTTAGGAGTACTTGATTCATTTT
1 GATCATAGAATCCTAATTATTTGACATCAGCATCACATCTAGTTAGGAGTACTTGATTAATTTC
* * * *
72508518 GATCATACAATCCTAATTAATTGGCATAAGCAT
1 GATCATAGAATCCTAATTATTTGACATCAGCAT
72508551 GATACATGAA
Statistics
Matches: 82, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
63 45 0.55
64 37 0.45
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (64 bp):
GATCATAGAATCCTAATTATTTGACATCAGCATCACATCTAGTTAGGAGTACTTGATTAATTTC
Found at i:72509235 original size:44 final size:46
Alignment explanation
Indices: 72509152--72509247 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 46
72509142 AGCCATTAGC
** ** *
72509152 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAG-T
1 CTTATCTTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATTGAAGAT
72509196 CTTATCTTC-CTGAGGTAGCAAG-GAAGCAGACTGAAGATTGAAGAT
1 CTTATCTTCTCTGAGGTAGCAAGAG-AGCAGACTGAAGATTGAAGAT
72509241 CTTATCT
1 CTTATCT
72509248 CCTTAAGCAG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
43 1 0.02
44 33 0.75
45 10 0.23
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (46 bp):
CTTATCTTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATTGAAGAT
Found at i:72509309 original size:177 final size:176
Alignment explanation
Indices: 72508749--72509317 Score: 820
Period size: 180 Copynumber: 3.2 Consensus size: 176
72508739 AAAGACGACA
* * * *
72508749 AATCTTATCTCCATGTATCAGCAATAGAGCAGATTTTAGCCACTAACCATATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCGGCAATAGAGCAGATTTTAGCCATTAGCCTTATCTCTCTGAGGTAG
* *
72508814 CAAGAGAGCAGGTTGAAGATTG-AGTCTTATCTTCCTGAGGTAGCAAGGAACCTGACTGAAGATT
66 CAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
* * * * **
72508878 -AAGGATCTTATCTCCCTCAGTAGTAGCAGAGCAGATCAAAGATGGCG
131 GAA-GATCTTATCTCCTTAAGAAGTTGTGGAGCAGATC-AAGATGGCG
* * *
72508925 AATCTTATCTCCATGTATCGGCAATAGAGTAGTTTTTAGCC-TCTAGCCTTATCTATCTGAGGTA
1 AATCTTATCTCCATGTATCGGCAATAGAGCAGATTTTAGCCAT-TAGCCTTATCTCTCTGAGGTA
* * *
72508989 GCAAGAGAGCAAGTTGAAGATGGTAGTCTTATCTTCCTAAGGTAGCAGCAAGGAAGCAGACTGAA
65 GCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGT---AGCAAGGAAGCAGACTGAA
*
72509054 GATTGAAGATCTTATCTCCTTAAGAAGTTGTGGAGCAGATGGAAGATGGCG
127 GATTGAAGATCTTATCTCCTTAAGAAGTTGTGGAGCAGAT-CAAGATGGCG
*
72509105 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCATTAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCGGCAATAGAGCAGATTTTAGCCATTAGCCTTATCTCTCTGAGGTAG
**
72509170 CAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
66 CAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
*
72509235 GAAGATCTTATCTCCTTAAGCAGTTGTGGAGCAGATCAATGATGGCG
131 GAAGATCTTATCTCCTTAAGAAGTTGTGGAGCAGATCAA-GATGGCG
* *
72509282 AATCTTATCTCCATGTATCGGCAATGGAGCAAATTT
1 AATCTTATCTCCATGTATCGGCAATAGAGCAGATTT
72509318 AAGTCACCAG
Statistics
Matches: 353, Mismatches: 31, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
176 79 0.22
177 118 0.33
180 153 0.43
181 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (176 bp):
AATCTTATCTCCATGTATCGGCAATAGAGCAGATTTTAGCCATTAGCCTTATCTCTCTGAGGTAG
CAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
GAAGATCTTATCTCCTTAAGAAGTTGTGGAGCAGATCAAGATGGCG
Found at i:72513717 original size:40 final size:40
Alignment explanation
Indices: 72513658--72513845 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
72513648 TGGAAAAAAA
72513658 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
*
72513698 TATTACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
*
72513738 TATTACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
**
72513778 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
*
72513818 TATAACCGAGTTAAGTCCCGAAGGCATT
1 TATAACCGGGTTAAGTCCCGAAGGCATT
72513846 TGTGCTGGTT
Statistics
Matches: 143, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
Found at i:72513879 original size:80 final size:80
Alignment explanation
Indices: 72513658--72513881 Score: 250
Period size: 80 Copynumber: 2.8 Consensus size: 80
72513648 TGGAAAAAAA
* ** * ** *
72513658 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATTACCGGGTTAAGTCCCGAAGGC
1 TATAACCGAGTTAAGTCCCGAAGGCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAAGGC
72513723 ATTCGTACGGGTTAT
66 ATTCGTACGGGTTAT
* * * * ** *
72513738 TATTACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 TATAACCGAGTTAAGTCCCGAAGGCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAAGGC
**
72513803 ATTCGTGTGGGTTAT
66 ATTCGTACGGGTTAT
* * * * * *
72513818 TATAACCGAGTTAAGTCCCGAAGGCATTTGTGCTGGTTGTTACATCCGAGCCAAATTCCGAAGG
1 TATAACCGAGTTAAGTCCCGAAGGCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAAGG
72513882 TATTTATGTT
Statistics
Matches: 127, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 127 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (80 bp):
TATAACCGAGTTAAGTCCCGAAGGCATTCGTACGGGTTATTACAACCGAGCCAAATCCCGAAGGC
ATTCGTACGGGTTAT
Found at i:72513879 original size:120 final size:120
Alignment explanation
Indices: 72513658--72513881 Score: 306
Period size: 120 Copynumber: 1.9 Consensus size: 120
72513648 TGGAAAAAAA
* *
72513658 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATTACCGGGTTAAGTCCCGAAGGC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATAACCGAGTTAAGTCCCGAAGGC
* * ** *
72513723 ATTCGTACGGGTTATTATTACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
66 ATTCGTACGGGTTATTAATACCGAGCCAAATCCCGAAGGCATTCGTACGGGTTAT
**
72513778 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTATTATAACCGAGTTAAGTCCCGAAGGC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATAACCGAGTTAAGTCCCGAAGGC
* * * * *
72513843 ATTTGTGCTGGTTGTTACAT-CCGAGCCAAATTCCGAAGG
66 ATTCGTACGGGTTATTA-ATACCGAGCCAAATCCCGAAGG
72513882 TATTTATGTT
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
120 88 0.99
121 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (120 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATAACCGAGTTAAGTCCCGAAGGC
ATTCGTACGGGTTATTAATACCGAGCCAAATCCCGAAGGCATTCGTACGGGTTAT
Found at i:72516219 original size:57 final size:56
Alignment explanation
Indices: 72516110--72516220 Score: 159
Period size: 57 Copynumber: 2.0 Consensus size: 56
72516100 GGTTATGAAT
* * **
72516110 GAAAGTTTGTCAGACTTAGTGGATATGCTCGAGAATGTGTATCGTCTTAGGCTNAGA
1 GAAAGTTTGTCAGACTTAGTAGATACGCTCGAGAATGTGTATCGTCCGAGGCT-AGA
* *
72516167 GAAAGTTTGTCAGACTTAGTAGATACGCTCGGGAATGTGTTTCGTCCGAGGCTA
1 GAAAGTTTGTCAGACTTAGTAGATACGCTCGAGAATGTGTATCGTCCGAGGCTA
72516221 TCATGTGTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
56 1 0.02
57 47 0.98
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (56 bp):
GAAAGTTTGTCAGACTTAGTAGATACGCTCGAGAATGTGTATCGTCCGAGGCTAGA
Found at i:72521270 original size:40 final size:40
Alignment explanation
Indices: 72521215--72521398 Score: 350
Period size: 40 Copynumber: 4.6 Consensus size: 40
72521205 AAAAAATATA
72521215 ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATT
1 ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATT
72521255 ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATT
1 ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATT
72521295 ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATT
1 ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATT
* *
72521335 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATA
1 ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATT
72521375 ACCGGGTTAAGTCCCGAAGGCATT
1 ACCGGGTTAAGTCCCGAAGGCATT
72521399 TGTGCTGGTT
Statistics
Matches: 142, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATT
Found at i:72521432 original size:120 final size:120
Alignment explanation
Indices: 72521215--72521434 Score: 316
Period size: 120 Copynumber: 1.8 Consensus size: 120
72521205 AAAAAATATA
*
72521215 ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATTACCGGGTTAAGTCCCGAAGGCATTC
1 ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTC
* * ** *
72521280 GTACGGGTTATTATTACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATT
66 GTACGGGTTATTAATACCGAGCCAAATCCCGAAGGCATTCGTACGGGTTATTATT
* *
72521335 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTT
1 ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTC
* * * *
72521400 GTGCTGGTTGTTACAT-CCGAGCCAAATTCCGAAGG
66 GTACGGGTTATTA-ATACCGAGCCAAATCCCGAAGG
72521435 TATTTATGTT
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
120 86 0.99
121 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (120 bp):
ACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTC
GTACGGGTTATTAATACCGAGCCAAATCCCGAAGGCATTCGTACGGGTTATTATT
Found at i:72526671 original size:31 final size:31
Alignment explanation
Indices: 72526628--72526742 Score: 214
Period size: 31 Copynumber: 3.7 Consensus size: 31
72526618 TTAGTCTTGA
*
72526628 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
72526658 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
72526689 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
72526720 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
72526743 ACTGTAAACG
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
30 5 0.06
31 78 0.94
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:72526813 original size:42 final size:42
Alignment explanation
Indices: 72526766--72526857 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
72526756 TGGCCCTTAG
*
72526766 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
72526808 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
72526850 GCCCATTT
1 GCCCATTT
72526858 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:72527033 original size:25 final size:25
Alignment explanation
Indices: 72527005--72527074 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
72526995 CTCTTTTAAT
72527005 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
72527030 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
72527055 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
72527075 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:72527914 original size:27 final size:26
Alignment explanation
Indices: 72527884--72527977 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 26
72527874 GGGCATATTC
*
72527884 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
* *
72527911 GTCACTTTACCTTGCAGGGGCTTTACA
1 GTCACTTTACC-TACAGGGGCTTTACG
*
72527938 GTCACTTTACCCTACAGGGGCTTTATG
1 GTCACTTTA-CCTACAGGGGCTTTACG
**
72527965 GTCTTTTTACCTA
1 GTCACTTTACCTA
72527978 ATAGGGGTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
26 4 0.07
27 49 0.88
28 3 0.05
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:72528059 original size:27 final size:27
Alignment explanation
Indices: 72528029--72528207 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
72528019 GTAAATCTAC
*
72528029 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
72528056 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* * *
72528084 AAAGTCAAGGGTATTTCTGTAATTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
* ** *
72528112 AAATCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
*** * * *
72528139 AAATTTAGGGTATTTCAGTACTTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
*
72528166 AAACC-AGTGGTATTTCAGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTAT
* *
72528193 AAACTAGGGGTATTT
1 AAACCAAGGGTATTT
72528208 TGGTAATTCT
Statistics
Matches: 122, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
26 2 0.02
27 90 0.74
28 16 0.13
29 14 0.11
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:72528213 original size:27 final size:27
Alignment explanation
Indices: 72528119--72528248 Score: 111
Period size: 27 Copynumber: 4.8 Consensus size: 27
72528109 TGTAAATCAA
* *
72528119 GGGTATTTTGGTAATTTTACAAATTTA-
1 GGGTATTTTAGTAATTTTACAAA-CTAG
* * * *
72528146 GGGTATTTCAGTACTTTCACAAACCAG
1 GGGTATTTTAGTAATTTTACAAACTAG
* *
72528173 TGGTATTTCAGTAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTTACAAACTAG
* * **
72528200 GGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTTAGTAATTTTA-CAAACTAG
*
72528227 GGGTATTTTAGTAATTTCACAA
1 GGGTATTTTAGTAATTTTACAA
72528249 TCGAGGGTAA
Statistics
Matches: 80, Mismatches: 21, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
26 2 0.03
27 75 0.94
28 3 0.04
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.40
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACTAG
Found at i:72528281 original size:27 final size:27
Alignment explanation
Indices: 72528247--72528417 Score: 200
Period size: 27 Copynumber: 6.3 Consensus size: 27
72528237 GTAATTTCAC
*
72528247 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
72528274 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * *
72528301 AATTGAGGATAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
72528328 AATCGAGGGTGAAACGGCAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
72528355 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
72528382 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
72528409 AATCGAGGG
1 AATCGAGGG
72528418 CATTTCAGTA
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 125 0.99
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:72539076 original size:40 final size:40
Alignment explanation
Indices: 72538986--72539205 Score: 243
Period size: 40 Copynumber: 5.5 Consensus size: 40
72538976 ACCCAAGTAT
* ** * *
72538986 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
72539024 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
72539064 CTTTGGGACTTAGCCCGGATATAGT-AGCTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCA-CTAGCACAAATGC
* *
72539104 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
72539144 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
72539184 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
72539206 CATTCGAATA
Statistics
Matches: 151, Mismatches: 23, Indels: 14
0.80 0.12 0.07
Matches are distributed among these distances:
38 11 0.07
39 18 0.12
40 117 0.77
41 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:72541478 original size:43 final size:42
Alignment explanation
Indices: 72541431--72541632 Score: 185
Period size: 42 Copynumber: 4.8 Consensus size: 42
72541421 CATCCAACGT
* * *
72541431 CCTAGGTTGCCTATGGTGCCCGAGGCTCCCGCATGACTAAGGG
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGC-TGACCAAGGG
*
72541474 CCTAGGTTACCGATGGTACCCGAGGCTCCCGCTGACCAAGGG
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCTGACCAAGGG
* * *
72541516 CCTAGGTTACCGATGGTGTCTGAGGCTCCCG-TACATCCAA--G
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCT-GA-CCAAGGG
* * * * * * *
72541557 CACGAAGCTACTGATGGTGCCCGAGGCTCCTGCACGACCAGGGG
1 C-CTAGGTTACCGATGGTGCCCGAGGCTCCCGC-TGACCAAGGG
* * *
72541601 CCTAGGTTGCCGATGGGGCCCGGGGCTCCCGC
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGC
72541633 ACGACCAGGG
Statistics
Matches: 126, Mismatches: 26, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
41 3 0.02
42 64 0.51
43 57 0.45
44 2 0.02
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (42 bp):
CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCTGACCAAGGG
Found at i:72541635 original size:43 final size:43
Alignment explanation
Indices: 72541431--72541644 Score: 211
Period size: 43 Copynumber: 5.0 Consensus size: 43
72541421 CATCCAACGT
* * * *
72541431 CCTAGGTTGCCTATGGTGCCCGAGGCTCCCGCATGACTAAGGG
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
72541474 CCTAGGTTACCGATGGTACCCGAGGCTCCCGC-TGACCAAGGG
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
72541516 CCTAGGTTACCGATGGTGTCTGAGGCTCCCGTAC-ATCCAA--G
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * *
72541557 CACGAAGCTACTGATGGTGCCCGAGGCTCCTGCACGACCAGGGG
1 C-CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
72541601 CCTAGGTTGCCGATGGGGCCCGGGGCTCCCGCACGACCAGGGG
1 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
72541644 C
1 C
72541645 NNNNNNNNNN
Statistics
Matches: 139, Mismatches: 26, Indels: 12
0.79 0.15 0.07
Matches are distributed among these distances:
41 2 0.01
42 66 0.47
43 69 0.50
44 2 0.01
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.17
Consensus pattern (43 bp):
CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:72542492 original size:24 final size:24
Alignment explanation
Indices: 72542465--72542511 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
72542455 TTCCGGGATG
72542465 GCTCACCGGAGCA-TCGCCGGGAAA
1 GCTCACCGGAGCACT-GCCGGGAAA
*
72542489 GCTCGCCGGAGCACTGCCGGGAA
1 GCTCACCGGAGCACTGCCGGGAA
72542512 CCTAACCGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.21, C:0.34, G:0.36, T:0.09
Consensus pattern (24 bp):
GCTCACCGGAGCACTGCCGGGAAA
Found at i:72552688 original size:22 final size:22
Alignment explanation
Indices: 72552661--72552704 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
72552651 ATCATGTATG
72552661 TTATTTGATAATATTATGATGC
1 TTATTTGATAATATTATGATGC
72552683 TTATTTGATAATATTATGATGC
1 TTATTTGATAATATTATGATGC
72552705 ATGTGAGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.50
Consensus pattern (22 bp):
TTATTTGATAATATTATGATGC
Found at i:72553744 original size:37 final size:37
Alignment explanation
Indices: 72553693--72553768 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
72553683 ATGATCGATG
*
72553693 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
72553730 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
72553767 TT
1 TT
72553769 TGGGTTTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:72564780 original size:20 final size:21
Alignment explanation
Indices: 72564755--72564797 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
72564745 ATAAATGTGT
*
72564755 ATTTTGAA-GTTTCTTGATAG
1 ATTTTGAATGCTTCTTGATAG
*
72564775 ATTTTGAATGCTTGTTGATAG
1 ATTTTGAATGCTTCTTGATAG
72564796 AT
1 AT
72564798 ATACAAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.26, C:0.05, G:0.21, T:0.49
Consensus pattern (21 bp):
ATTTTGAATGCTTCTTGATAG
Found at i:72568180 original size:43 final size:42
Alignment explanation
Indices: 72568090--72568192 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 42
72568080 CACGTGACCA
* * * * *
72568090 TGTCTGGGACATTGGCATCATATATGATTTCGTGTAAGACCC
1 TGTCTAGGACAGTGGCATCATATATGATTACATGTAAAACCC
* *
72568132 TGTCTAGGATAGTGGCATCAATATTTGATTACATGTAAAACCAC
1 TGTCTAGGACAGTGGCATC-ATATATGATTACATGTAAAACC-C
*
72568176 -GTCTAGGACATTGGCAT
1 TGTCTAGGACAGTGGCAT
72568193 TGTATGAGCT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
42 16 0.32
43 33 0.66
44 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32
Consensus pattern (42 bp):
TGTCTAGGACAGTGGCATCATATATGATTACATGTAAAACCC
Found at i:72579810 original size:20 final size:20
Alignment explanation
Indices: 72579785--72579830 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
72579775 AGATCGATTA
72579785 CTCGATAACCTTCGATTTTC
1 CTCGATAACCTTCGATTTTC
72579805 CTCGATAACCTTCGATTTTC
1 CTCGATAACCTTCGATTTTC
72579825 CTCGAT
1 CTCGAT
72579831 CTAAATCCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.20, C:0.30, G:0.11, T:0.39
Consensus pattern (20 bp):
CTCGATAACCTTCGATTTTC
Found at i:72594215 original size:46 final size:46
Alignment explanation
Indices: 72594162--72594337 Score: 153
Period size: 46 Copynumber: 3.8 Consensus size: 46
72594152 TATTTGGGCA
*
72594162 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
72594208 TCCGAACTTGTTGAGTTGAGTCCGAGTT--CGT-GGGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
** * *
72594255 TCTAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
72594301 -CCTAAGCTCGTCGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72594338 GCGGGTTACC
Statistics
Matches: 101, Mismatches: 21, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
43 7 0.07
44 2 0.02
45 4 0.04
46 55 0.54
47 25 0.25
48 1 0.01
49 1 0.01
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:72595718 original size:48 final size:47
Alignment explanation
Indices: 72595553--72595913 Score: 189
Period size: 48 Copynumber: 7.6 Consensus size: 47
72595543 TCCGTCAAGT
* * * * *
72595553 CGATGCCATGTCCTAGACATGGTCTTACACTG-ACTATCGAAATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGCACT-TCTATAT-G-TGC
* * * * * *
72595602 CAATGCCATGTCCAAGACATGGTCTTACACTAGCTCTCACATATCTATGC
1 CGATGCCATGTCCCAGACATGGTCTTACAC-AGCACT-TC-TATATGTGC
* *
72595652 GGATGCCATGTCCTAGACATGGTCTTACACAGACACTTCTATATGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAG-CACTTCTATATGTGC
** * *
72595700 CGATGCCATGTCCCAGACATGGTCTTACATTGACACATC--T-CGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAG-CACTTCTATATGT-GC
* * * *
72595746 CGATG-CATGTCCCAGACAT-GTCTTACACTG-GCTTAC-ATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGCACTT-CTATAT-G-TGC
* *
72595792 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGTCTCAT-T-T-C
1 CGATGCCATGTCCCAGACATGGTCTTACAC-AGCACT--TCT-ATATGTGC
* * * *
72595838 CGATGTCATATCTCAGACATGGTCTTACACTAGCTC-TC-ATAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACAC-AGCACTTCTAT-ATGT-GC
72595886 CGATG-CATGTCCCAGACAT-GTCTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
72595914 TGGCACACAA
Statistics
Matches: 251, Mismatches: 38, Indels: 49
0.74 0.11 0.14
Matches are distributed among these distances:
42 2 0.01
43 3 0.01
44 11 0.04
45 19 0.08
46 54 0.22
47 24 0.10
48 64 0.25
49 32 0.13
50 35 0.14
51 5 0.02
52 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACAGCACTTCTATATGTGC
Found at i:72595784 original size:46 final size:47
Alignment explanation
Indices: 72595505--72595917 Score: 289
Period size: 46 Copynumber: 8.7 Consensus size: 47
72595495 GGGTATAATA
* * *
72595505 CCGATGCCGTGTCCCAGACATAGTCTTACACTGGC-TCAT-CCGTCAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATATCGT--AG
* * * *
72595552 TCGATGCCATGTCCTAGACATGGTCTTACACTGACTATCGAAATCG-AGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TC-ATATCGTA-G
* * *
72595601 CCAATGCCATGTCCAAGACATGGTCTTACACTAGCTCTCACATATC-TATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T--CATATCGTA-G
* * * *
72595651 CGGATGCCATGTCCTAGACATGGTCTTACACAGACACTTCTATAT-GT-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTG--GCTTC-ATATCGTAG
* * * *
72595699 CCGATGCCATGTCCCAGACATGGTCTTACATTGAC-ACATCTCGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATATCGTAG
*
72595745 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CATATCGTA-G
* * * * * **
72595791 CCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGTCTCATTT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATATCGTAG
* * * * *
72595837 CCGATGTCATATCTCAGACATGGTCTTACACTAGCTCTCATAAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCAT-ATCGTAG
72595885 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC
72595918 ACACAAATAA
Statistics
Matches: 297, Mismatches: 47, Indels: 45
0.76 0.12 0.12
Matches are distributed among these distances:
44 14 0.05
45 18 0.06
46 72 0.24
47 54 0.18
48 56 0.19
49 37 0.12
50 40 0.13
51 4 0.01
52 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATATCGTAG
Found at i:72599569 original size:28 final size:28
Alignment explanation
Indices: 72599524--72599734 Score: 185
Period size: 28 Copynumber: 7.5 Consensus size: 28
72599514 TACATACATG
*
72599524 CATATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCATCAGGCCCAATCTCATT
* * *
72599552 TATATGGCCCATCCGGCCCAAT-TCACGT
1 CATATGGCCCATCAGGCCCAATCTCA-TT
* *
72599580 CATAAGGCCCATC-GGCCCAATTCACATT
1 CATATGGCCCATCAGGCCCAA-TCTCATT
* *
72599608 CATATGGCCCGTTAGGCCCAATCTCATT
1 CATATGGCCCATCAGGCCCAATCTCATT
* * *
72599636 TATATGGCCCATCCGGCCCACT-TCACGTT
1 CATATGGCCCATCAGGCCCAATCTCA--TT
* * * *
72599665 CATATAGCCGATCAAGCCCAATTCACATT
1 CATATGGCCCATCAGGCCCAA-TCTCATT
* * *
72599694 CATATGGCCCGTTAGGCCCAATCTTATT
1 CATATGGCCCATCAGGCCCAATCTCATT
*
72599722 TATATGGCCCATC
1 CATATGGCCCATC
72599735 CGACCCAAAT
Statistics
Matches: 141, Mismatches: 34, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
27 13 0.09
28 81 0.57
29 44 0.31
30 1 0.01
31 2 0.01
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATCTCATT
Found at i:72599724 original size:86 final size:84
Alignment explanation
Indices: 72599519--72599747 Score: 352
Period size: 86 Copynumber: 2.7 Consensus size: 84
72599509 ACCCCTACAT
* *
72599519 ACATGCATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTCATA
1 ACATTCATATGGCCCGTTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTCATA
*
72599584 AGGCCCATCGGCCCAATTC
66 AGGCCCATCAGCCCAATTC
*
72599603 ACATTCATATGGCCCGTTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCACTTCACGTTCAT
1 ACATTCATATGGCCCGTTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACG-TCAT
*
72599668 ATA-GCCGATCAAGCCCAATTC
65 A-AGGCCCATC-AGCCCAATTC
* * *
72599689 ACATTCATATGGCCCGTTAGGCCCAATCTTATTTATATGGCCCATCCGACCCAAATCAC
1 ACATTCATATGGCCCGTTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCAC
72599748 ATTATACCCA
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
84 57 0.43
85 11 0.08
86 65 0.49
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.26
Consensus pattern (84 bp):
ACATTCATATGGCCCGTTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTCATA
AGGCCCATCAGCCCAATTC
Found at i:72599856 original size:19 final size:19
Alignment explanation
Indices: 72599832--72599868 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
72599822 CAGACTATCA
72599832 GGCCCATTTAGCCTATTCC
1 GGCCCATTTAGCCTATTCC
*
72599851 GGCCCATTTGGCCTATTC
1 GGCCCATTTAGCCTATTC
72599869 ACAACCCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.14, C:0.35, G:0.19, T:0.32
Consensus pattern (19 bp):
GGCCCATTTAGCCTATTCC
Found at i:72599990 original size:16 final size:16
Alignment explanation
Indices: 72599966--72600008 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
72599956 GTAGCTGAAC
*
72599966 TTTTGGCTTTTCGGCA
1 TTTTGGCTTTTCAGCA
* *
72599982 TTTTAGCTTTTCAGTA
1 TTTTGGCTTTTCAGCA
72599998 TTTTGGCTTTT
1 TTTTGGCTTTT
72600009 GCCGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.09, C:0.14, G:0.19, T:0.58
Consensus pattern (16 bp):
TTTTGGCTTTTCAGCA
Found at i:72614321 original size:40 final size:40
Alignment explanation
Indices: 72614242--72614445 Score: 263
Period size: 40 Copynumber: 5.1 Consensus size: 40
72614232 TGGGATTTAA
* *
72614242 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
72614281 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
72614321 CCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
72614361 CCAGATGTAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72614401 CCGGA-ACTAGTCACTAGCGCA-AAATGCCTACGGGACTTAGC
1 CCGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGC
72614442 CCGG
1 CCGG
72614446 TCATCATCCA
Statistics
Matches: 147, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 17 0.12
40 103 0.70
41 22 0.15
42 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72618049 original size:29 final size:29
Alignment explanation
Indices: 72617978--72618215 Score: 207
Period size: 29 Copynumber: 8.3 Consensus size: 29
72617968 ACCCCTACAT
*
72617978 ACATGCATATGGCCCA-CTAGGCCCAA-TC
1 ACATTCATATGGCCCATC-AGGCCCAATTC
* * * *
72618006 TCATTTATTTGGCCCATCCGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
72618035 ACATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* * * * *
72618064 ATATTCATATGACCCGTTAGGCCCCA-TC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* * * * *
72618092 TCATTTATATGGTCCATCCGACCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
**
72618121 ACATTCATATGGCAGATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* *
72618150 ACATTCATATGGCCCGTTAGGCCCAA-TC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* * * * * *
72618178 TCATTTATGTGGCCCATCCGACCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAATTC
72618207 ACATT-ATAT
1 ACATTCATAT
72618216 CCATGCTCAC
Statistics
Matches: 162, Mismatches: 44, Indels: 8
0.76 0.21 0.04
Matches are distributed among these distances:
28 61 0.38
29 101 0.62
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAATTC
Found at i:72618057 original size:57 final size:57
Alignment explanation
Indices: 72617978--72618215 Score: 214
Period size: 57 Copynumber: 4.2 Consensus size: 57
72617968 ACCCCTACAT
* * *
72617978 ACATGCATATGGCCCA-CTAGGCCCAATCTCATTTATTTGGCCCATCCGGCCCAATTC
1 ACATTCATATGGCCCATC-AGGCCCAATCTCATTTATATGGCCCATCAGGCCCAATTC
* * * *
72618035 ACATTCATATGGCCCATCAGGCCCAAT-TCATATTCATATGACCCGTTAGGCCCCA-TC
1 ACATTCATATGGCCCATCAGGCCCAATCTCAT-TT-ATATGGCCCATCAGGCCCAATTC
* * * * * * * **
72618092 TCATTTATATGGTCCATCCGACCCAATTCACATTCATATGGCAGATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAA-TCTCATTTATATGGCCCATCAGGCCCAATTC
* * * * * *
72618150 ACATTCATATGGCCCGTTAGGCCCAATCTCATTTATGTGGCCCATCCGACCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAATCTCATTTATATGGCCCATCAGGCCCAATTC
72618207 ACATT-ATAT
1 ACATTCATAT
72618216 CCATGCTCAC
Statistics
Matches: 140, Mismatches: 35, Indels: 13
0.74 0.19 0.07
Matches are distributed among these distances:
56 8 0.06
57 91 0.65
58 38 0.27
59 3 0.02
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (57 bp):
ACATTCATATGGCCCATCAGGCCCAATCTCATTTATATGGCCCATCAGGCCCAATTC
Found at i:72618128 original size:86 final size:86
Alignment explanation
Indices: 72617995--72618215 Score: 345
Period size: 86 Copynumber: 2.6 Consensus size: 86
72617985 TATGGCCCAC
* * *
72617995 TAGGCCCAATCTCATTTATTTGGCCCATCCGGCCCAATTCACATTCATATGGCCCATCAGGCCCA
1 TAGGCCCAATCTCATTTATATGGCCCATCCGACCCAATTCACATTCATATGGCACATCAGGCCCA
*
72618060 ATTCATATTCATATGACCCGT
66 ATTCACATTCATATGACCCGT
* * *
72618081 TAGGCCCCATCTCATTTATATGGTCCATCCGACCCAATTCACATTCATATGGCAGATCAGGCCCA
1 TAGGCCCAATCTCATTTATATGGCCCATCCGACCCAATTCACATTCATATGGCACATCAGGCCCA
*
72618146 ATTCACATTCATATGGCCCGT
66 ATTCACATTCATATGACCCGT
* *
72618167 TAGGCCCAATCTCATTTATGTGGCCCATCCGACCCAAATCACATT-ATAT
1 TAGGCCCAATCTCATTTATATGGCCCATCCGACCCAATTCACATTCATAT
72618216 CCATGCTCAC
Statistics
Matches: 123, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
85 4 0.03
86 119 0.97
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.29
Consensus pattern (86 bp):
TAGGCCCAATCTCATTTATATGGCCCATCCGACCCAATTCACATTCATATGGCACATCAGGCCCA
ATTCACATTCATATGACCCGT
Found at i:72622984 original size:31 final size:31
Alignment explanation
Indices: 72622946--72623009 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
72622936 CCTTTTCATA
72622946 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
72622977 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
72623008 TT
1 TT
72623010 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:72623326 original size:23 final size:24
Alignment explanation
Indices: 72623203--72623345 Score: 236
Period size: 24 Copynumber: 6.0 Consensus size: 24
72623193 GCTTTATCAT
*
72623203 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
72623228 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72623252 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72623276 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72623300 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72623323 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72623346 TCACTTCCTC
Statistics
Matches: 113, Mismatches: 3, Indels: 5
0.93 0.02 0.04
Matches are distributed among these distances:
23 23 0.20
24 78 0.69
25 12 0.11
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72623420 original size:20 final size:20
Alignment explanation
Indices: 72623395--72623461 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
72623385 TTATGATTAC
72623395 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
72623415 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
72623435 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
72623455 ACCATGT
1 ATCATGT
72623462 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72623426 original size:11 final size:11
Alignment explanation
Indices: 72623395--72623450 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
72623385 TTATGATTAC
72623395 ATCATGTGCAT
1 ATCATGTGCAT
*
72623406 ATCA--TACAT
1 ATCATGTGCAT
72623415 ATCATGTGCAT
1 ATCATGTGCAT
*
72623426 ATCA--TACAT
1 ATCATGTGCAT
*
72623435 GTCATGTGCAT
1 ATCATGTGCAT
72623446 ATCAT
1 ATCAT
72623451 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:72623530 original size:25 final size:25
Alignment explanation
Indices: 72623498--72623545 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72623488 ATACATAAAC
* * *
72623498 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72623523 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72623546 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72640092 original size:159 final size:159
Alignment explanation
Indices: 72639803--72640119 Score: 598
Period size: 159 Copynumber: 2.0 Consensus size: 159
72639793 AACAGTCATA
*
72639803 GTCCTTTAACAACTCTATCCATCTTCGCTGCCTAAGATTCAGCTCCTTTTGAGTCAGCAAGTACT
1 GTCCTTTAACAACTCTATCCACCTTCGCTGCCTAAGATTCAGCTCCTTTTGAGTCAGCAAGTACT
*
72639868 TAAGACTCTTGTGATCCGTATGGATGATGCATTTCTCTCCATACAGGTAACGCCTCCATATCTTA
66 TAAGACTCTTGTGATCCGTATAGATGATGCATTTCTCTCCATACAGGTAACGCCTCCATATCTTA
72639933 AGTGAAAAGATTACCGCTGCCAATTCCAT
131 AGTGAAAAGATTACCGCTGCCAATTCCAT
72639962 GTCCTTTAACAACTCTATCCACCTTCGCTGCCTAAGATTCAGCTCCTTTTGAGTCAGCAAGTACT
1 GTCCTTTAACAACTCTATCCACCTTCGCTGCCTAAGATTCAGCTCCTTTTGAGTCAGCAAGTACT
*
72640027 TAAGACTCTTGTGATCCGTATAGATGATGCATTTCTCTCCATACAGGTAATGCCTCCATATCTTA
66 TAAGACTCTTGTGATCCGTATAGATGATGCATTTCTCTCCATACAGGTAACGCCTCCATATCTTA
*
72640092 AGTGCAAAGATTACCGCTGCCAATTCCA
131 AGTGAAAAGATTACCGCTGCCAATTCCA
72640120 AGTCATGCGT
Statistics
Matches: 154, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
159 154 1.00
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (159 bp):
GTCCTTTAACAACTCTATCCACCTTCGCTGCCTAAGATTCAGCTCCTTTTGAGTCAGCAAGTACT
TAAGACTCTTGTGATCCGTATAGATGATGCATTTCTCTCCATACAGGTAACGCCTCCATATCTTA
AGTGAAAAGATTACCGCTGCCAATTCCAT
Found at i:72643977 original size:31 final size:31
Alignment explanation
Indices: 72643939--72644002 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
72643929 CCTTTTCATA
72643939 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
72643970 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
72644001 TT
1 TT
72644003 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:72644248 original size:24 final size:24
Alignment explanation
Indices: 72644196--72644361 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
72644186 GCTTTATCAT
*
72644196 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
72644221 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
72644245 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
72644268 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
72644292 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
72644316 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72644339 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72644362 TCACTTCCTC
Statistics
Matches: 127, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
23 42 0.33
24 73 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72644272 original size:47 final size:48
Alignment explanation
Indices: 72644195--72644361 Score: 232
Period size: 47 Copynumber: 3.5 Consensus size: 48
72644185 TGCTTTATCA
* *
72644195 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
72644244 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
72644291 GATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
72644338 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
72644362 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
47 70 0.65
48 25 0.23
49 13 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:72644296 original size:71 final size:71
Alignment explanation
Indices: 72644196--72644361 Score: 253
Period size: 71 Copynumber: 2.3 Consensus size: 71
72644186 GCTTTATCAT
* * *
72644196 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAA
72644260 GCCCTTTA
64 GCCCTTTA
* * *
72644268 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGC
72644333 CCTTTA
66 CCTTTA
72644339 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72644362 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 75 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGC
CCTTTA
Found at i:72644439 original size:20 final size:20
Alignment explanation
Indices: 72644411--72644477 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
72644401 TTATGATTAC
*
72644411 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
72644431 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
72644451 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
72644471 ACCATGT
1 ATCATGT
72644478 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72644546 original size:25 final size:25
Alignment explanation
Indices: 72644514--72644561 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72644504 ATACATAAAC
* * *
72644514 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72644539 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72644562 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72648733 original size:47 final size:49
Alignment explanation
Indices: 72648663--72648794 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 49
72648653 GGCATAATGC
* *
72648663 CGATGCCATGTCCTAGACTTGGTCATACACTAGCTC-ATC-CATC-AAGT
1 CGATGCCATGTCCTAGACATGGTC-TACACTAGCTCTATCAAATCGAAGT
* *
72648710 CGATGCCATGTCTTAGACATGGTCTTACACT-G-TCTATCAAAATCGAGGT
1 CGATGCCATGTCCTAGACATGGTC-TACACTAGCTCTATC-AAATCGAAGT
**
72648759 CGACACCATGTCCTAGACATGGTCTACACTAGCTCT
1 CGATGCCATGTCCTAGACATGGTCTACACTAGCTCT
72648795 CACATATTCG
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
45 2 0.03
46 4 0.06
47 28 0.39
48 9 0.13
49 25 0.35
50 3 0.04
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACATGGTCTACACTAGCTCTATCAAATCGAAGT
Found at i:72650511 original size:75 final size:75
Alignment explanation
Indices: 72650354--72650498 Score: 281
Period size: 75 Copynumber: 1.9 Consensus size: 75
72650344 ACATAAATTA
72650354 CAATTCATAGTATACCAAATTTGCATGCTCAAACCAATCCAAACTACCTATATCCAGCCATTTAA
1 CAATTCATAGTATACCAAATTTGCATGCTCAAACCAATCCAAACTACCTATATCCAGCCATTTAA
72650419 CTATGAATAT
66 CTATGAATAT
*
72650429 CAATTCATAGTATACCAAATTTGCATGCTCAAACCAATCCAAACTACCTATATCTAGCCATTTAA
1 CAATTCATAGTATACCAAATTTGCATGCTCAAACCAATCCAAACTACCTATATCCAGCCATTTAA
72650494 CTATG
66 CTATG
72650499 TCTATTTGTT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.38, C:0.26, G:0.07, T:0.30
Consensus pattern (75 bp):
CAATTCATAGTATACCAAATTTGCATGCTCAAACCAATCCAAACTACCTATATCCAGCCATTTAA
CTATGAATAT
Found at i:72652225 original size:40 final size:40
Alignment explanation
Indices: 72652170--72652322 Score: 236
Period size: 40 Copynumber: 3.8 Consensus size: 40
72652160 AATGAACATN
* *
72652170 CCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAG
1 CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAA
72652210 CCCGGATATAGTAACTCAG-ACAAATGCCTTCGGGACTTAA
1 CCCGGATATAGTAACTC-GCACAAATGCCTTCGGGACTTAA
*
72652250 CCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAA
* * *
72652290 CCCAGATATAGTCACTAGCACAAATGCCTTCGG
1 CCCGGATATAGTAACTCGCACAAATGCCTTCGG
72652323 ATCTTAGTCC
Statistics
Matches: 104, Mismatches: 7, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (40 bp):
CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAA
Found at i:72661526 original size:56 final size:56
Alignment explanation
Indices: 72661466--72661588 Score: 210
Period size: 56 Copynumber: 2.2 Consensus size: 56
72661456 GCCTTGCTCA
* * *
72661466 CACACATATATCGAAGTCACATAGCGATGCCAACGTATTAAACGTAGTTTTACTCG
1 CACACATATATCGAACTCACATAGCGATGCCAACATATTAAACGTAGTCTTACTCG
*
72661522 CACACATATATCGAACTCACATATCGATGCCAACATATTAAACGTAGTCTTACTCG
1 CACACATATATCGAACTCACATAGCGATGCCAACATATTAAACGTAGTCTTACTCG
72661578 CACACATATAT
1 CACACATATAT
72661589 TGATGCCATG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (56 bp):
CACACATATATCGAACTCACATAGCGATGCCAACATATTAAACGTAGTCTTACTCG
Found at i:72663153 original size:17 final size:17
Alignment explanation
Indices: 72663131--72663165 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
72663121 TCCATAGAAA
72663131 TCCCTAAGTTATATTAT
1 TCCCTAAGTTATATTAT
72663148 TCCCTAAGTTATATTAT
1 TCCCTAAGTTATATTAT
72663165 T
1 T
72663166 ATCTCTCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.49
Consensus pattern (17 bp):
TCCCTAAGTTATATTAT
Found at i:72663569 original size:18 final size:18
Alignment explanation
Indices: 72663543--72663577 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72663533 TCGTAACATT
*
72663543 GTGTTGTTTGGAAAACAA
1 GTGTCGTTTGGAAAACAA
*
72663561 GTGTCGTTTTGAAAACA
1 GTGTCGTTTGGAAAACA
72663578 TGTCCTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (18 bp):
GTGTCGTTTGGAAAACAA
Found at i:72664225 original size:50 final size:52
Alignment explanation
Indices: 72664189--72664293 Score: 153
Period size: 52 Copynumber: 2.1 Consensus size: 52
72664179 GCCTAGCCTC
*
72664189 TTTT-AAT-AACTGGGGCAAAAGCCCTTTT-GGTAAACTGGGGCATAAGCCA
1 TTTTCAATAAACTAGGGCAAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCA
* * *
72664238 TTTTCAATAAATTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
1 TTTTCAATAAACTAGGGCAAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCA
72664290 TTTT
1 TTTT
72664294 GCACTTCCTC
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
49 4 0.08
50 3 0.06
51 18 0.37
52 24 0.49
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (52 bp):
TTTTCAATAAACTAGGGCAAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCA
Found at i:72664255 original size:26 final size:26
Alignment explanation
Indices: 72664183--72664293 Score: 102
Period size: 26 Copynumber: 4.3 Consensus size: 26
72664173 CTGGAGGCCT
* *
72664183 AGCCTCTTTT-AAT-AACTGGGGCAAA
1 AGCC-CTTTTCAATAAACTAGGGCATA
** *
72664208 AGCCCTTTT-GGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
* *
72664233 AGCCATTTTCAATAAATTAGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
** *
72664259 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
72664285 AGCCCTTTT
1 AGCCCTTTT
72664294 GCACTTCCTC
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
24 6 0.08
25 23 0.32
26 42 0.59
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTAGGGCATA
Found at i:72664372 original size:20 final size:20
Alignment explanation
Indices: 72664347--72664399 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
72664337 TGAATACATT
72664347 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
* * * *
72664367 ATGTGCATTTTATACCTGTC
1 ATGTGCATATCATACATATC
72664387 ATGTGCATATCAT
1 ATGTGCATATCAT
72664400 CTCAACCATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:72669605 original size:40 final size:40
Alignment explanation
Indices: 72669536--72670021 Score: 850
Period size: 40 Copynumber: 12.2 Consensus size: 40
72669526 AACCAAAGTA
* * **
72669536 CCTTCGGGATTTA-GCCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
*
72669575 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
72669615 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
72669655 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
72669695 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
72669735 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
72669775 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
72669815 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
72669855 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
72669895 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
* **
72669935 CCTTCGGGACTT-TAGCCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAT-CCCGGATATAGTAACTCGCACAAATG
* * *
72669975 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
72670015 CCTTCGG
1 CCTTCGG
72670022 ATCTTAGTCC
Statistics
Matches: 430, Mismatches: 14, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
39 13 0.03
40 417 0.97
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
Found at i:72675682 original size:25 final size:25
Alignment explanation
Indices: 72675654--72675746 Score: 105
Period size: 26 Copynumber: 3.6 Consensus size: 25
72675644 CTCTTTTAAT
*
72675654 AACTGGGGCAAAAGCCCTTTCGGTA
1 AACTGGGGCATAAGCCCTTTCGGTA
**
72675679 AACTGGGGCATAAGCCCTTCTCAATA
1 AACTGGGGCATAAGCCCTT-TCGGTA
* * *
72675705 AACTAGAGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCC-CTTTCGGTA
*
72675731 AACCGGGGCATAAGCC
1 AACTGGGGCATAAGCC
72675747 TTTTTGCACT
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
25 18 0.33
26 35 0.64
27 2 0.04
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.20
Consensus pattern (25 bp):
AACTGGGGCATAAGCCCTTTCGGTA
Found at i:72675827 original size:20 final size:20
Alignment explanation
Indices: 72675802--72675858 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
72675792 TTATGCATAC
72675802 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
72675822 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
72675842 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
72675859 TAACCATGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72675833 original size:11 final size:11
Alignment explanation
Indices: 72675802--72675857 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
72675792 TTATGCATAC
72675802 ATCATGTGCAT
1 ATCATGTGCAT
*
72675813 ATCA--TACAT
1 ATCATGTGCAT
72675822 ATCATGTGCAT
1 ATCATGTGCAT
*
72675833 ATCA--TACAT
1 ATCATGTGCAT
72675842 ATCATGTGCAT
1 ATCATGTGCAT
72675853 ATCAT
1 ATCAT
72675858 ATAACCATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:72681865 original size:46 final size:46
Alignment explanation
Indices: 72681798--72681972 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
72681788 TGTAACCCGC
*
72681798 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
72681844 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
72681894 -C-T-CGCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
72681937 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
72681973 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 62 0.58
47 26 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:72681919 original size:93 final size:93
Alignment explanation
Indices: 72681806--72681977 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
72681796 GCCCATAAGT
** * *
72681806 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72681871 CGAGCTCGGATGCCTAGTTACATCTCGC
66 CGAGCTCGGATGCCTAGTTACATCTCGC
* *
72681899 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
72681964 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
72681978 CAAATATTCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCGC
Found at i:72681992 original size:46 final size:45
Alignment explanation
Indices: 72681849--72681992 Score: 110
Period size: 46 Copynumber: 3.1 Consensus size: 45
72681839 CGCATCCATA
* * * * *
72681849 AGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--AATATCT
* * * * * *** *
72681896 CGCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCG--GATGCCCAAATATCT
72681942 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATA-TCT
72681988 AGTGA
1 AGTGA
72681993 CATGTCACTT
Statistics
Matches: 74, Mismatches: 19, Indels: 9
0.73 0.19 0.09
Matches are distributed among these distances:
44 6 0.08
45 1 0.01
46 33 0.45
47 30 0.41
49 4 0.05
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCT
Found at i:72683154 original size:30 final size:30
Alignment explanation
Indices: 72683119--72683177 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
72683109 AGCACTTTAT
72683119 GCATAAAATTTCTTCACGAATTTTTCACAA
1 GCATAAAATTTCTTCACGAATTTTTCACAA
72683149 GCATAAAATTTCTTCACGAATTTTTCACA
1 GCATAAAATTTCTTCACGAATTTTTCACA
72683178 CAATCATGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.37
Consensus pattern (30 bp):
GCATAAAATTTCTTCACGAATTTTTCACAA
Found at i:72683785 original size:29 final size:30
Alignment explanation
Indices: 72683723--72683783 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
72683713 ATTTTCGAGC
72683723 TTTA-GGGAAAAAGTGTAAATATGCAAAAG
1 TTTAGGGGAAAAAGTGTAAATATGCAAAAG
* * *
72683752 TTTAGGGGAAAAATTGTAATTTTGCAAAAG
1 TTTAGGGGAAAAAGTGTAAATATGCAAAAG
72683782 TT
1 TT
72683784 AGAGTTAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.31
Consensus pattern (30 bp):
TTTAGGGGAAAAAGTGTAAATATGCAAAAG
Found at i:72701633 original size:43 final size:42
Alignment explanation
Indices: 72701585--72701703 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 42
72701575 AGTCGAAATT
*
72701585 GATTTGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCCTC
1 GATTTGAGAT-TCGTGTAAGACCATGTCTGGGACACAGGCCTC
* * *
72701628 GATTTGAGATTTCGTGTAAGACCCTGTCTGGGACAGAGGCTTC
1 GATTTGAGA-TTCGTGTAAGACCATGTCTGGGACACAGGCCTC
*
72701671 GATATTGA-ATTACATGTAAGACCATGTCTGGGA
1 GAT-TTGAGATT-CGTGTAAGACCATGTCTGGGA
72701704 TGTCGGCATT
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
42 2 0.03
43 61 0.90
44 5 0.07
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (42 bp):
GATTTGAGATTCGTGTAAGACCATGTCTGGGACACAGGCCTC
Done.