Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 219 of 284
Found at i:72706366 original size:56 final size:56
Alignment explanation
Indices: 72706306--72706442 Score: 229
Period size: 56 Copynumber: 2.4 Consensus size: 56
72706296 TCCTAGACAG
*
72706306 GGTCTTACTCACACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
* * *
72706362 GGTCTTACTCTCACAAATATATTGAAGTCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
*
72706418 GGTCTTACTCGCACACATATATCGA
1 GGTCTTACTCACACACATATATCGA
72706443 TGCCATGGTC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 74 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
Found at i:72709977 original size:27 final size:27
Alignment explanation
Indices: 72709947--72709998 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
72709937 TTTGTTATGT
72709947 TTGGCACACTATATCACTTTGCCATGA
1 TTGGCACACTATATCACTTTGCCATGA
* *
72709974 TTGGTACACTTTATCACTTTGCCAT
1 TTGGCACACTATATCACTTTGCCAT
72709999 AGTTCAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.38
Consensus pattern (27 bp):
TTGGCACACTATATCACTTTGCCATGA
Found at i:72710131 original size:31 final size:32
Alignment explanation
Indices: 72710055--72710268 Score: 210
Period size: 31 Copynumber: 6.8 Consensus size: 32
72710045 TCAGATAAAT
* *
72710055 GTAGCTA-AAGCTACCACTTATCACTTG-TCACTT
1 GTAGCTAGAAGCTACCACTTTTCAC-TGATCA--G
* * *
72710088 GTAGC-CGAAGCTACCACTATTCACTGATCAA
1 GTAGCTAGAAGCTACCACTTTTCACTGATCAG
* *
72710119 GTAGCTAG-AGCTACCATTTTTCACTAATCAG
1 GTAGCTAGAAGCTACCACTTTTCACTGATCAG
* *
72710150 GTAGC-CGAAGCTACTACTTTTCACTGATCAG
1 GTAGCTAGAAGCTACCACTTTTCACTGATCAG
* *
72710181 GTAGCCA-AAGCTACCACTTTTCACCGATCAG
1 GTAGCTAGAAGCTACCACTTTTCACTGATCAG
*
72710212 GTAG-TCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCTAGAAGCTACCACTTTTCACTGATCAG
*
72710243 GTATAGC-CGAAGCTACCACTTTTCAC
1 G--TAGCTAGAAGCTACCACTTTTCAC
72710269 ATTGTACACA
Statistics
Matches: 153, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
30 1 0.01
31 104 0.68
32 3 0.02
33 45 0.29
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (32 bp):
GTAGCTAGAAGCTACCACTTTTCACTGATCAG
Found at i:72710174 original size:62 final size:62
Alignment explanation
Indices: 72710088--72710268 Score: 245
Period size: 62 Copynumber: 2.9 Consensus size: 62
72710078 CTTGTCACTT
* * * * *
72710088 GTAGCCGAAGCTACCACTATTCACTGATCAAGTAGCTAGAGCTACCATTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAAGTAGCCAAAGCTACCACTTTTCACCAATCAG
* * *
72710150 GTAGCCGAAGCTACTACTTTTCACTGATCAGGTAGCCAAAGCTACCACTTTTCACCGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAAGTAGCCAAAGCTACCACTTTTCACCAATCAG
* * *
72710212 GTAGTCGAAGCTACCACTTTTCACTGATCAGGTATAGCCGAAGCTACCACTTTTCAC
1 GTAGCCGAAGCTACCACTTTTCACTGATCAAG--TAGCCAAAGCTACCACTTTTCAC
72710269 ATTGTACACA
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
62 84 0.79
64 22 0.21
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAAGTAGCCAAAGCTACCACTTTTCACCAATCAG
Found at i:72710198 original size:93 final size:94
Alignment explanation
Indices: 72710062--72710268 Score: 258
Period size: 93 Copynumber: 2.2 Consensus size: 94
72710052 AATGTAGCTA
* * * *
72710062 AAGCTACCACTTATCACTTG-TCACTTGTAGCCGAAGCTACCACTATTCACTGATCAAGTAGCTA
1 AAGCTACCACTTTTCAC-TGATCA--GGTAGCCAAAGCTACCACTATTCACCGATCAAGTAG-TA
*
72710126 G-AGCTACCATTTTTCACTAATCAGG-TAGCCG
62 GAAGCTACCACTTTTCACTAATCAGGATAGCCG
* * * *
72710157 AAGCTACTACTTTTCACTGATCAGGTAGCCAAAGCTACCACTTTTCACCGATCAGGTAGTCGAAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCAAAGCTACCACTATTCACCGATCAAGTAGTAGAAG
*
72710222 CTACCACTTTTCACTGATCAGGTATAGCCG
66 CTACCACTTTTCACTAATCAGG-ATAGCCG
72710252 AAGCTACCACTTTTCAC
1 AAGCTACCACTTTTCAC
72710269 ATTGTACACA
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
92 2 0.02
93 53 0.55
94 2 0.02
95 40 0.41
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (94 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCCAAAGCTACCACTATTCACCGATCAAGTAGTAGAAG
CTACCACTTTTCACTAATCAGGATAGCCG
Found at i:72710342 original size:33 final size:33
Alignment explanation
Indices: 72710261--72710369 Score: 123
Period size: 33 Copynumber: 3.3 Consensus size: 33
72710251 GAAGCTACCA
* * * *
72710261 CTTTTCACA-TTGTACACATAAGGCGTACATTTT
1 CTTTTCA-AGTTGTACACACAAAGTGTACATTTC
*
72710294 CTTTTCAAG-TGTACACACAAAGTGTACGTTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
* *
72710326 CTTTTTAAGTTGTACACACACAGTGTACATTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
*
72710359 CTTTTCCAGTT
1 CTTTTCAAGTT
72710370 CTACCTTTTA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
32 27 0.42
33 37 0.58
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (33 bp):
CTTTTCAAGTTGTACACACAAAGTGTACATTTC
Found at i:72715912 original size:24 final size:24
Alignment explanation
Indices: 72715885--72715985 Score: 139
Period size: 24 Copynumber: 4.2 Consensus size: 24
72715875 AAGGCTGTCA
* *
72715885 GGAGAAGATTTGGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
72715909 GGAGAGGATTTAGGAGCTAATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
72715933 GAAGAGGATTTAGGAGCGGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
72715957 AGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
72715981 GGAGA
1 GGAGA
72715986 ACGGTGTTGG
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 66 1.00
ACGTcount: A:0.36, C:0.04, G:0.41, T:0.20
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:72718822 original size:18 final size:18
Alignment explanation
Indices: 72718783--72718819 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
72718773 TCATCATCCC
*
72718783 TCATCCCTCATCCTTCAT
1 TCATCCCTCATCATTCAT
72718801 TCATCCCTCACTCATTCAT
1 TCATCCCTCA-TCATTCAT
72718820 CATTCTCTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.19, C:0.43, G:0.00, T:0.38
Consensus pattern (18 bp):
TCATCCCTCATCATTCAT
Found at i:72722139 original size:26 final size:26
Alignment explanation
Indices: 72722105--72722157 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
72722095 AGTCGATAAA
*
72722105 TTTATTTTTCCTGTTGATTTGATTAT
1 TTTATTTTTCCTGCTGATTTGATTAT
72722131 TTTATTTTTCCTGCTGATTTGATTAT
1 TTTATTTTTCCTGCTGATTTGATTAT
72722157 T
1 T
72722158 CTAGATTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.09, G:0.11, T:0.64
Consensus pattern (26 bp):
TTTATTTTTCCTGCTGATTTGATTAT
Found at i:72727824 original size:27 final size:27
Alignment explanation
Indices: 72727794--72727991 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
72727784 TACTAAAATG
* *
72727794 CCCTCGATTTGTAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
72727821 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
72727848 CCCTCAATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
72727875 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
72727902 CCCTCGGTTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
72727929 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
72727956 CCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
*
72727983 CCCTTGATT
1 CCCTCGATT
72727992 GTGAAATTAC
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 144 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:72727866 original size:54 final size:54
Alignment explanation
Indices: 72727808--72727991 Score: 269
Period size: 54 Copynumber: 3.4 Consensus size: 54
72727798 CGATTTGTAG
* * * *
72727808 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCAATTTACAA
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAA
* * *
72727862 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGGTTTACAG
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAA
* * *
72727916 AATTATCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAGTTTACAA
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAA
*
72727970 AATTACCATTTTACCCTTGATT
1 AATTACCATTTTACCCTCGATT
72727992 GTGAAATTAC
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 116 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.40
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAA
Found at i:72727918 original size:81 final size:81
Alignment explanation
Indices: 72727794--72727991 Score: 272
Period size: 81 Copynumber: 2.4 Consensus size: 81
72727784 TACTAAAATG
* * *
72727794 CCCTCGATTTGTAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCAATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTA
*
72727859 CAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
* * * *
72727875 CCCTCGATTTATAGAATTACCATTTTACCCTCGGTTTACAGAATTATCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTA
*
72727940 TAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
72727956 CCCTC-AGTTTACAAAATTACCATTTTACCCTTGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
72727992 GTGAAATTAC
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 102 0.99
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTA
CAAAATTACCATTTTA
Found at i:72728053 original size:27 final size:27
Alignment explanation
Indices: 72728023--72728163 Score: 99
Period size: 27 Copynumber: 5.2 Consensus size: 27
72728013 TGTAGGATAT
* *
72728023 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTATAA
* * ** * *
72728050 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTATAA
* *
72728077 AATTATCGAAATA-CCCTCAATTTATAA
1 AATTACCAAAATACCCCT-AATTTATAA
* *
72728104 AA-TACCAAAATACCCTTAATTTACAA
1 AATTACCAAAATACCCCTAATTTATAA
* *
72728130 AATTA-CAGAAATACCCTTAACTTTCTAA
1 AATTACCA-AAATACCCCTAA-TTTATAA
72728158 ACATTA
1 A-ATTA
72728164 TAGAAATACC
Statistics
Matches: 92, Mismatches: 16, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
26 23 0.25
27 59 0.64
28 6 0.07
29 4 0.04
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTATAA
Found at i:72728172 original size:29 final size:27
Alignment explanation
Indices: 72728076--72728203 Score: 120
Period size: 27 Copynumber: 4.7 Consensus size: 27
72728066 CTGGTTTGTG
* *
72728076 AAATTATC-GAAATACCCTCAATTTATA
1 AAATTA-CAGAAATACCCTTAATTTACA
72728103 AAA-TACCA-AAATACCCTTAATTTACA
1 AAATTA-CAGAAATACCCTTAATTTACA
72728129 AAATTACAGAAATACCCTTAACTTT-CTA
1 AAATTACAGAAATACCCTTAA-TTTAC-A
* * **
72728157 AACATTATAGAAATACCATTGGTTTACA
1 AA-ATTACAGAAATACCCTTAATTTACA
*
72728185 AAATTACTGAAATACCCTT
1 AAATTACAGAAATACCCTT
72728204 GGTTTATAGA
Statistics
Matches: 84, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
26 24 0.29
27 32 0.38
28 12 0.14
29 16 0.19
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.31
Consensus pattern (27 bp):
AAATTACAGAAATACCCTTAATTTACA
Found at i:72728292 original size:27 final size:27
Alignment explanation
Indices: 72728249--72728322 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
72728239 AAATGACTAA
*
72728249 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
72728276 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
72728303 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
72728323 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:72728326 original size:27 final size:27
Alignment explanation
Indices: 72728262--72728326 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
72728252 ACCCCTAATA
*
72728262 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
72728289 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
72728316 GGTAAAATGAC
1 GGTAAAATGAC
72728327 GAATATACCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:72747976 original size:5 final size:5
Alignment explanation
Indices: 72747966--72748064 Score: 55
Period size: 6 Copynumber: 19.0 Consensus size: 5
72747956 CATGTCTTTC
* *
72747966 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
*
72748014 AAAAAT AAAA- ATAAAT AAAAT AAAAT AAAAAT ATGAAT -AAAT AAAA-
1 -AAAAT AAAAT A-AAAT AAAAT AAAAT -AAAAT A-AAAT AAAAT AAAAT
72748060 AAAAT
1 AAAAT
72748065 GTTGTTTACC
Statistics
Matches: 74, Mismatches: 8, Indels: 24
0.70 0.08 0.23
Matches are distributed among these distances:
3 3 0.04
4 8 0.11
5 28 0.38
6 35 0.47
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:72747995 original size:6 final size:6
Alignment explanation
Indices: 72747986--72748046 Score: 68
Period size: 6 Copynumber: 9.8 Consensus size: 6
72747976 AATAAAATTG
* * * *
72747986 AAATGA AAATAA AAATCA AAAGAA AAATAA AAATAA AAATAA ATAAAATA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA A-AATA-A
72748036 AAATAA AAATA
1 AAATAA AAATA
72748047 TGAATAAATA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
6 38 0.83
7 6 0.13
8 2 0.04
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:72748001 original size:12 final size:11
Alignment explanation
Indices: 72747966--72748046 Score: 76
Period size: 12 Copynumber: 7.1 Consensus size: 11
72747956 CATGTCTTTC
72747966 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
72747979 AAAATTGAAAT
1 AAAATAAAAAT
72747990 GAAAATAAAAAT
1 -AAAATAAAAAT
*
72748002 CAAAAGAAAAAT
1 -AAAATAAAAAT
72748014 AAAAATAAAAAT
1 -AAAATAAAAAT
72748026 -AAAT-AAAAT
1 AAAATAAAAAT
72748035 AAAATAAAAAT
1 AAAATAAAAAT
72748046 A
1 A
72748047 TGAATAAATA
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
9 5 0.09
10 8 0.14
11 9 0.16
12 30 0.53
13 5 0.09
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.19
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:72748045 original size:26 final size:25
Alignment explanation
Indices: 72747986--72748064 Score: 97
Period size: 26 Copynumber: 3.2 Consensus size: 25
72747976 AATAAAATTG
* * *
72747986 AAATGAAAATAAAAATCAA-AAGAA
1 AAATAAAAATAAAAATAAATAAAAA
72748010 AAATAAAAATAAAAATAAATAAAATA
1 AAATAAAAATAAAAATAAATAAAA-A
**
72748036 AAATAAAAATATGAATAAATAAAAA
1 AAATAAAAATAAAAATAAATAAAAA
72748061 AAAT
1 AAAT
72748065 GTTGTTTACC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
24 17 0.35
25 8 0.17
26 23 0.48
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.18
Consensus pattern (25 bp):
AAATAAAAATAAAAATAAATAAAAA
Found at i:72751199 original size:13 final size:13
Alignment explanation
Indices: 72751177--72751209 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
72751167 AAGGATTTGT
72751177 TTAT-TAAACTAA
1 TTATCTAAACTAA
72751189 TTATCTAAACTAA
1 TTATCTAAACTAA
*
72751202 TTAACTAA
1 TTATCTAA
72751210 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:72753355 original size:10 final size:10
Alignment explanation
Indices: 72753318--72753362 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
72753308 TTATTTTAAA
72753318 ACATATCAATC
1 ACATAT-AATC
*
72753329 ACATATAAGC
1 ACATATAATC
* *
72753339 ACGTATAATT
1 ACATATAATC
72753349 ACATATAATC
1 ACATATAATC
72753359 ACAT
1 ACAT
72753363 TTAGTCACAG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
10 22 0.79
11 6 0.21
ACGTcount: A:0.47, C:0.20, G:0.04, T:0.29
Consensus pattern (10 bp):
ACATATAATC
Found at i:72757096 original size:40 final size:40
Alignment explanation
Indices: 72757013--72757275 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
72757003 TTGAATGCTG
* * * * * *
72757013 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
72757053 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
72757093 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
72757133 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
72757173 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
72757213 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
72757252 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72757276 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:72757295 original size:79 final size:80
Alignment explanation
Indices: 72757052--72757310 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
72757042 AAGTGAATAT
* * * * * *
72757052 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
72757116 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
72757132 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
72757197 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
72757212 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
72757276 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
72757291 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
72757311 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:72766875 original size:43 final size:43
Alignment explanation
Indices: 72766754--72766910 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 43
72766744 TGTGTTCTCG
*
72766754 TGTAAGACCACGTCTGGGACATCGGCATCGACT-TATGATTT-A
1 TGTAAGACCACGTCTGGGACATCGGCATCGA-TATTTGATTTCA
* * *
72766796 TGTGTAAGACGATGCCTGGGACATCGGCATCG-TATTTGATTTCA
1 --TGTAAGACCACGTCTGGGACATCGGCATCGATATTTGATTTCA
*
72766840 TGTAAGACC-CTGTCTGGGACAGT-GGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACA-TCGGCATCGATATTTGATTTCA
*
72766883 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATCGGCAT
72766911 TGTAAGAGCT
Statistics
Matches: 98, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
42 26 0.27
43 43 0.44
44 29 0.30
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATCGGCATCGATATTTGATTTCA
Found at i:72778650 original size:27 final size:27
Alignment explanation
Indices: 72778619--72778796 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72778609 TAAATTGTAC
72778619 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72778646 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72778672 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72778700 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72778728 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72778755 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72778782 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72778797 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72778733 original size:82 final size:81
Alignment explanation
Indices: 72778620--72778775 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72778610 AAATTGTACA
* *
72778620 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72778684 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72778701 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72778766 TGCGAGTTGA
65 TGCGAATTGA
72778776 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72778787 original size:82 final size:81
Alignment explanation
Indices: 72778616--72778796 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72778606 GATTAAATTG
* *
72778616 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72778681 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72778697 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72778761 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72778779 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72778797 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72785007 original size:31 final size:31
Alignment explanation
Indices: 72784972--72785032 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
72784962 TATGAATTTG
72784972 GTCTATCCAGATCTATACAAGTAAATTTAAA
1 GTCTATCCAGATCTATACAAGTAAATTTAAA
72785003 GTCTATCCAGATCTATACAAGTAAATTTAA
1 GTCTATCCAGATCTATACAAGTAAATTTAA
72785033 CATAATTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (31 bp):
GTCTATCCAGATCTATACAAGTAAATTTAAA
Found at i:72790023 original size:27 final size:26
Alignment explanation
Indices: 72789975--72790026 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72789965 GCGAGGCTGC
*
72789975 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
72790001 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
72790027 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72790764 original size:27 final size:26
Alignment explanation
Indices: 72790716--72790767 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72790706 GCGAGGCTGC
*
72790716 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
72790742 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
72790768 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72790946 original size:741 final size:741
Alignment explanation
Indices: 72789524--72791005 Score: 2883
Period size: 741 Copynumber: 2.0 Consensus size: 741
72789514 AAACCATAGC
72789524 GGAAAAAGAAATTTAAATAGCGGCCTTATTACAACTTAAAACCCAAAATTAAATCAGAATATAAA
1 GGAAAAAGAAATTTAAATAGCGGCCTTATTACAACTTAAAACCCAAAATTAAATCAGAATATAAA
72789589 ATAATAAAAATAAACTAACTTAGAAAAACCAACTTTGCAGATGATGTGGCCACTCCGAATCCCTC
66 ATAATAAAAATAAACTAACTTAGAAAAACCAACTTTGCAGATGATGTGGCCACTCCGAATCCCTC
72789654 ACAGCTCCAAGCCCACTATGGTTGGGGATTTCCTGCAGAGATGAAAATAAAGGGTGAGTTCGGTA
131 ACAGCTCCAAGCCCACTATGGTTGGGGATTTCCTGCAGAGATGAAAATAAAGGGTGAGTTCGGTA
*
72789719 AACTCAGTGTGTAACATAACCCAACCATAGCCCAAAACAGATCAAACCTCAGAGTCAGACTTATC
196 AACTCAGTGTGCAACATAACCCAACCATAGCCCAAAACAGATCAAACCTCAGAGTCAGACTTATC
* *
72789784 TGGGCCTTGGCCCAGTACAGAAATCAGAATGAAACCCATAGGCCCATAGCAGATACAGAACAAAT
261 TGGGCCTTAGCCCAGTACAAAAATCAGAATGAAACCCATAGGCCCATAGCAGATACAGAACAAAT
72789849 ATATCATGAATGCAGAAATCCCAGCCTAGAGCCATCCATAACACCCCCGTACTAGCCTTACACCA
326 ATATCATGAATGCAGAAATCCCAGCCTAGAGCCATCCATAACACCCCCGTACTAGCCTTACACCA
72789914 TGTAGGGAGACTACTAGACCCACCCAACCGCTACACACCACAGAAATTGCAGCGAGGCTGCCAGA
391 TGTAGGGAGACTACTAGACCCACCCAACCGCTACACACCACAGAAATTGCAGCGAGGCTGCCAGA
72789979 TATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCA
456 TATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCA
*
72790044 GAACGCTTCCTCCATCAATATAAACCCATGTCCCATGCAGCAGAAATAATATGTCATGGTATACG
521 GAACACTTCCTCCATCAATATAAACCCATGTCCCATGCAGCAGAAATAATATGTCATGGTATACG
72790109 TATACAGAAACATAACATCATGCTTTTTAGAAAAAAATAACCCTAGGGGTAAAATCGTAATTTTG
586 TATACAGAAACATAACATCATGCTTTTTAGAAAAAAATAACCCTAGGGGTAAAATCGTAATTTTG
72790174 CATGCATAAGGGTATCTCAGTAATTGTTACCTATTGTTAAGGTTTCATGCTCATTCTAACGTTTA
651 CATGCATAAGGGTATCTCAGTAATTGTTACCTATTGTTAAGGTTTCATGCTCATTCTAACGTTTA
72790239 CCAAGTAATCAGAAGTACATACCTCG
716 CCAAGTAATCAGAAGTACATACCTCG
72790265 GGAAAAAGAAATTTAAATAGCGGCCTTATTACAACTTAAAACCCAAAATTAAATCAGAATATAAA
1 GGAAAAAGAAATTTAAATAGCGGCCTTATTACAACTTAAAACCCAAAATTAAATCAGAATATAAA
72790330 ATAATAAAAATAAACTAACTTAGAAAAACCAACTTTGCAGATGATGTGGCCACTCCGAATCCCTC
66 ATAATAAAAATAAACTAACTTAGAAAAACCAACTTTGCAGATGATGTGGCCACTCCGAATCCCTC
* *
72790395 ACAGCTCCAAGCCCACTATGGTTGGGGATTTCCTGTAGTGATGAAAATAAAGGGTGAGTTCGGTA
131 ACAGCTCCAAGCCCACTATGGTTGGGGATTTCCTGCAGAGATGAAAATAAAGGGTGAGTTCGGTA
* *
72790460 AACTCAGTGTGCAACATAACCCAACCATAGCCCAAAACATATCAAACCTTAGAGTCAGACTTATC
196 AACTCAGTGTGCAACATAACCCAACCATAGCCCAAAACAGATCAAACCTCAGAGTCAGACTTATC
*
72790525 TGGGCCTTAGCCCAGTACAAAAATCAGAATGAAACCCATAGGCCCATAGTAGATACAGAACAAAT
261 TGGGCCTTAGCCCAGTACAAAAATCAGAATGAAACCCATAGGCCCATAGCAGATACAGAACAAAT
72790590 ATATCATGAATGCAGAAATCCCAGCCTAGAGCCATCCATAACACCCCCGTACTAGCCTTACACCA
326 ATATCATGAATGCAGAAATCCCAGCCTAGAGCCATCCATAACACCCCCGTACTAGCCTTACACCA
72790655 TGTAGGGAGACTACTAGACCCACCCAACCGCTACACACCACAGAAATTGCAGCGAGGCTGCCAGA
391 TGTAGGGAGACTACTAGACCCACCCAACCGCTACACACCACAGAAATTGCAGCGAGGCTGCCAGA
72790720 TATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCA
456 TATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCA
72790785 GAACACTTCCTCCATCAATATAAACCCATGTCCCATGCAGCAGAAATAATATGTCATGGTATACG
521 GAACACTTCCTCCATCAATATAAACCCATGTCCCATGCAGCAGAAATAATATGTCATGGTATACG
72790850 TATACAGAAACATAACATCATGCTTTTTAGAAAAAAATAACCCTAGGGGTAAAATCGTAATTTTG
586 TATACAGAAACATAACATCATGCTTTTTAGAAAAAAATAACCCTAGGGGTAAAATCGTAATTTTG
72790915 CATGCATAAGGGTATCTCAGTAATTGTTACCTATTGTTAAGGTTTCATGCTCATTCTAACGTTTA
651 CATGCATAAGGGTATCTCAGTAATTGTTACCTATTGTTAAGGTTTCATGCTCATTCTAACGTTTA
72790980 CCAAGTAATCAGAAGTACATACCTCG
716 CCAAGTAATCAGAAGTACATACCTCG
72791006 TCTTTTTACC
Statistics
Matches: 732, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
741 732 1.00
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (741 bp):
GGAAAAAGAAATTTAAATAGCGGCCTTATTACAACTTAAAACCCAAAATTAAATCAGAATATAAA
ATAATAAAAATAAACTAACTTAGAAAAACCAACTTTGCAGATGATGTGGCCACTCCGAATCCCTC
ACAGCTCCAAGCCCACTATGGTTGGGGATTTCCTGCAGAGATGAAAATAAAGGGTGAGTTCGGTA
AACTCAGTGTGCAACATAACCCAACCATAGCCCAAAACAGATCAAACCTCAGAGTCAGACTTATC
TGGGCCTTAGCCCAGTACAAAAATCAGAATGAAACCCATAGGCCCATAGCAGATACAGAACAAAT
ATATCATGAATGCAGAAATCCCAGCCTAGAGCCATCCATAACACCCCCGTACTAGCCTTACACCA
TGTAGGGAGACTACTAGACCCACCCAACCGCTACACACCACAGAAATTGCAGCGAGGCTGCCAGA
TATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCA
GAACACTTCCTCCATCAATATAAACCCATGTCCCATGCAGCAGAAATAATATGTCATGGTATACG
TATACAGAAACATAACATCATGCTTTTTAGAAAAAAATAACCCTAGGGGTAAAATCGTAATTTTG
CATGCATAAGGGTATCTCAGTAATTGTTACCTATTGTTAAGGTTTCATGCTCATTCTAACGTTTA
CCAAGTAATCAGAAGTACATACCTCG
Found at i:72791610 original size:27 final size:26
Alignment explanation
Indices: 72791561--72791613 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
72791551 AGCGAGGCTG
*
72791561 CCAGATATTGTGACGAAGTCACCAGA
1 CCAGATATTGTGACGAAGCCACCAGA
* *
72791587 CCAGATATATGTGGCGAGGCCACCAGA
1 CCAGATAT-TGTGACGAAGCCACCAGA
72791614 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.32, C:0.25, G:0.26, T:0.17
Consensus pattern (26 bp):
CCAGATATTGTGACGAAGCCACCAGA
Found at i:72792247 original size:846 final size:846
Alignment explanation
Indices: 72790616--72793182 Score: 3692
Period size: 846 Copynumber: 3.0 Consensus size: 846
72790606 AATCCCAGCC
72790616 TAGAGCCATCCATAACACCCCCGTACTAGCCTTACACCATGTAGGGAGACTACTAGACCCACCCA
1 TAGAGCCATCCATAACACCCCCGTACTAGCCTTACACCATGTAGGGAGACTACTAGACCCACCCA
*
72790681 ACCGCTACACACCACAGAAATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGA
66 ACCGCTACACACCACAGAAATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGACCAGA
*
72790746 TATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGAACACTTCCTCCATCAATATAAACC
131 TATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGAACGCTTCCTCCATCAATATAAACC
72790811 CATGTCCCATGCAGCAGAAATAATATGTCATGGTATACGTATACAGAAACATAACATCATGCTTT
196 CATGTCCCATGCA-CAGAAATAATATGTCATGGTATACGTATACAGAAACATAACATCATGCTTT
* *
72790876 TTAGAAAAAAATAACCCTAGGGGTAAAATCGTAATTTTGCATGCATAAGGGTATCTCAGTAATTG
260 TTAGAAAAAAATAACCCTAGGGGTAAAATCGTAATTTTGCATGCATAAGGGTATTTCAGTAATTA
* *
72790941 TTACCTATTGTTAAGGTTTCATGCTCATTCTAACGTTTACCAAGTAATCAGAAGTACATACCTCG
325 TTACCTATTGCTAAGGTTTCATGCTCATTCTAACGTTTACCAAGTAATCAGAAGTACTTACCTCG
* *
72791006 TCTTTTTACCAAAGTGGGCCCGTTGGCCTATTAGCCCGTTTTCGGCCCATTAAGCCCAAAAATAT
390 TCTTTTTACCAAAGTGGGCCCGTTGGCCCATTGGCCCGTTTTCGGCCCATTAAGCCCAAAAATAT
72791071 CGTTGTGCACGAAAATGCACACTCTGTACTCTAATCATCCAAATGCACCATATTCATTAACAACT
455 CGTTGTGCACGAAAATGCACACTCTGTACTCTAATCATCCAAATGCACCATATTCATTAACAACT
*
72791136 GTATCACGAGTGCTCGCACGCTCGCGAGTTCACAAAATACCAACGTTTCGATATTTCGGTTTTTA
520 GTATCACGAGTGCTCGCACGCTCGCGAGTTCACAAAATACCAACGTTTCGATATTTCGGCTTTTA
72791201 CCGATTCAGTCTAAGGGAGGGTGTCATTTACACACCTGGTTGATGACGACTGATGACGATATCTC
585 CCGATTCAGTCTAAGGGAGGGTGTCATTTACACACCTGGTTGATGACGACTGATGACGATATCTC
72791266 CCACGCGATAATCCTACAATCGATCACTAACACATTAGACTTACGAATTAATGATAACTAACATA
650 CCACGCGATAATCCTACAATCGATCACTAACACATTAGACTTACGAATTAATGATAACTAACATA
72791331 AATCCATGTCAACTAACCCAATCATCATACAAGTTAGTCATTTATCCATGAGGGGCAAAATAGTC
715 AATCCATGTCAACTAACCCAATCATCATACAAGTTAGTCATTTATCCATGAGGGGCAAAATAGTC
72791396 ATTTTACCCTTCAGGGGTAAATCGGTAGTCCTACCTTACAGGGGTATTTTAGTAATTCTACAACT
780 ATTTTACCCTTCAGGGGTAAATCGGTAGTCCTACCTTACAGGGGTATTTTAGTAATTCTACAACT
72791461 T-
845 TA
72791462 TAGAGCCATCCATAACACCCCCGTACTAGCCTTACACCATGTAGGGAGACTACTAGACCCACCCA
1 TAGAGCCATCCATAACACCCCCGTACTAGCCTTACACCATGTAGGGAGACTACTAGACCCACCCA
72791527 ACCGCTACACACCACAGAAATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGACCAGA
66 ACCGCTACACACCACAGAAATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGACCAGA
72791592 TATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGAACGCTTCCTCCATCAATATAAACC
131 TATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGAACGCTTCCTCCATCAATATAAACC
* *
72791657 CATGTCCCATGCAACAGAAATAATATGTCATGGCATACGTATACAGAAACAGAACATCATGCTTT
196 CATGTCCCATGC-ACAGAAATAATATGTCATGGTATACGTATACAGAAACATAACATCATGCTTT
*
72791722 TCAGAAAAAAATAACCCTAGGGGTAAAATCGTAATTTTGCATGCATAAGGGTATTTCAGTAATTA
260 TTAGAAAAAAATAACCCTAGGGGTAAAATCGTAATTTTGCATGCATAAGGGTATTTCAGTAATTA
72791787 TTACCTATTGCTAAGGTTTCATGCTCATTCTAACGTTTACCAAGTAATCAGAAGTACTTACCTCG
325 TTACCTATTGCTAAGGTTTCATGCTCATTCTAACGTTTACCAAGTAATCAGAAGTACTTACCTCG
*
72791852 TCTTTTTACCAAAGTGGGCCCGTTGGCCCATTGGCCCGTTTTCGGCCCATTAAGCCCAAAAATAC
390 TCTTTTTACCAAAGTGGGCCCGTTGGCCCATTGGCCCGTTTTCGGCCCATTAAGCCCAAAAATAT
*
72791917 CGTTGTGCACGAAAATGCACACTCTGCACTCTAATCATCCAAATGCACCATATTCATTAACAACT
455 CGTTGTGCACGAAAATGCACACTCTGTACTCTAATCATCCAAATGCACCATATTCATTAACAACT
* * *
72791982 GTCTCACGAGCGCTCGCACGCTCGCGAGTTCACAAAATACCAACGTTTCGGTATTTCGGCTTTTA
520 GTATCACGAGTGCTCGCACGCTCGCGAGTTCACAAAATACCAACGTTTCGATATTTCGGCTTTTA
* *
72792047 CCGATTCAGTCTAAGGGAGGGTGTCGTTTACACACCTGGTTGATGACGATTGATGACGATATCTC
585 CCGATTCAGTCTAAGGGAGGGTGTCATTTACACACCTGGTTGATGACGACTGATGACGATATCTC
*
72792112 CCACGCGATAATCCTACAATCGATCACTAACACATTAGACTTACGAATTAACGATAACTAACATA
650 CCACGCGATAATCCTACAATCGATCACTAACACATTAGACTTACGAATTAATGATAACTAACATA
* * *
72792177 AATCCACGTCAACTAACCCAATCATCACACAAGTTAGTCATTTA-CGCACGAGGGGCAAAATAGT
715 AATCCATGTCAACTAACCCAATCATCATACAAGTTAGTCATTTATC-CATGAGGGGCAAAATAGT
* *
72792241 CATTTTACCCTCCAGGGGTAAATCGGTAGTCCTACCCTACAGGGGTATTTTAGTAATTCTACAAC
779 CATTTTACCCTTCAGGGGTAAATCGGTAGTCCTACCTTACAGGGGTATTTTAGTAATTCTACAAC
72792306 TTA
844 TTA
* * ** * * ** * **
72792309 TCCACTTGGGCCTACGGACCCATTGGGACCACATGGCCCAT-TTCAGCCCATCGCGGCCCGAAAT
1 T--A---GAG-C--C--ATCCA-T---A--ACA-CCCCCGTACT-AG-CC-TTAC--ACC-ATGT
*** * ** *** ** * * * **
72792373 AGCCGTCCTACTGCTAGA-GTAATGAGA--AATACACACCTATTAGGAGACTGCAGTTAATTCGT
43 AG--G-GAGACTACTAGACCCACCCA-ACCGCTACACACC-A-CA-GAAATTGCAG-CGA---G-
* * * * * * * * * * * **** * *
72792435 GCT-CCAAACACTCTTAGCTGACGCCCAACCCAAACGAACACATCACAAAGCAAAAGGGATCAAC
96 GCTGCCAGATATTGTGA-C-GAAG-TC-A-CCAGAC-CAGATAT-ATGTGGC--GA-GG--CCAC
** * * ** ** * * * * * *
72792499 CAAGAAGGTTATGCCTACTCT-CC-TCATGGTT--TGC-TCTATATAAAGCCA-G-CTC-T-C-C
149 C-AGATTG-CA-G-CGAGGCTGCCAGAACGCTTCCTCCATCAATATAAACCCATGTCCCATGCAC
* *
72792554 ----AT-CTA-CTC-T--TATACGTATACAGAAACATAACATCATGCTTTTTAGAAAAAAATAAC
210 AGAAATAATATGTCATGGTATACGTATACAGAAACATAACATCATGCTTTTTAGAAAAAAATAAC
72792610 CCTAGGGGTAAAATCGTAATTTTGCATGCATAAGGGTATTTCAGTAATTATTACCTATTGCTAAG
275 CCTAGGGGTAAAATCGTAATTTTGCATGCATAAGGGTATTTCAGTAATTATTACCTATTGCTAAG
72792675 GTTTCATGCTCATTCTAACGTTTACCAAGTAATCAGAAGTACTTACCTCGTCTTTTTACCAAAGT
340 GTTTCATGCTCATTCTAACGTTTACCAAGTAATCAGAAGTACTTACCTCGTCTTTTTACCAAAGT
72792740 GGGCCCGTTGGCCCATTGGCCCGTTTTCGGCCCATTAAGCCCAAAAATATCGTTGTGCACGAAAA
405 GGGCCCGTTGGCCCATTGGCCCGTTTTCGGCCCATTAAGCCCAAAAATATCGTTGTGCACGAAAA
72792805 TGCACACTCTGTACTCTAATCATCCAAATGCACCATATTCATTAACAACTGTATCACGAGTGCTC
470 TGCACACTCTGTACTCTAATCATCCAAATGCACCATATTCATTAACAACTGTATCACGAGTGCTC
72792870 GCACGCTCGCGAGTTCACAAAATACCAACGTTTCGATATTTCGGCTTTTACCGATTCAGTCTAAG
535 GCACGCTCGCGAGTTCACAAAATACCAACGTTTCGATATTTCGGCTTTTACCGATTCAGTCTAAG
72792935 GGAGGGTGTCATTTACACACCTGGTTGATGACGACTGATGACGATATCTCCCACGCGATAATCCT
600 GGAGGGTGTCATTTACACACCTGGTTGATGACGACTGATGACGATATCTCCCACGCGATAATCCT
*
72793000 ACAATCGATCACGAACACATTAGACTTACGAATTAATGATAACTAACATAAATCCATGTCAACTA
665 ACAATCGATCACTAACACATTAGACTTACGAATTAATGATAACTAACATAAATCCATGTCAACTA
72793065 ACCCAATCATCATACAAGTTAGTCATTTATCCATGAGGGGCAAAATAGTCATTTTACCCTTCAGG
730 ACCCAATCATCATACAAGTTAGTCATTTATCCATGAGGGGCAAAATAGTCATTTTACCCTTCAGG
72793130 GGTAAATCGGTAGTCCTACCTTACAGGGGTATTTTAGTAATTCTACAACTTA
795 GGTAAATCGGTAGTCCTACCTTACAGGGGTATTTTAGTAATTCTACAACTTA
72793182 T
1 T
72793183 CCACTTGGGC
Statistics
Matches: 1564, Mismatches: 102, Indels: 83
0.89 0.06 0.05
Matches are distributed among these distances:
845 1 0.00
846 817 0.52
847 2 0.00
849 1 0.00
852 2 0.00
853 1 0.00
855 1 0.00
857 4 0.00
858 1 0.00
861 1 0.00
863 4 0.00
864 6 0.00
865 2 0.00
866 2 0.00
868 2 0.00
869 4 0.00
870 8 0.01
871 4 0.00
872 10 0.01
873 609 0.39
874 2 0.00
875 1 0.00
876 2 0.00
877 11 0.01
878 6 0.00
879 3 0.00
880 1 0.00
881 1 0.00
882 6 0.00
883 4 0.00
884 4 0.00
885 1 0.00
886 3 0.00
887 3 0.00
888 12 0.01
889 6 0.00
890 4 0.00
891 5 0.00
892 3 0.00
893 4 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (846 bp):
TAGAGCCATCCATAACACCCCCGTACTAGCCTTACACCATGTAGGGAGACTACTAGACCCACCCA
ACCGCTACACACCACAGAAATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGACCAGA
TATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGAACGCTTCCTCCATCAATATAAACC
CATGTCCCATGCACAGAAATAATATGTCATGGTATACGTATACAGAAACATAACATCATGCTTTT
TAGAAAAAAATAACCCTAGGGGTAAAATCGTAATTTTGCATGCATAAGGGTATTTCAGTAATTAT
TACCTATTGCTAAGGTTTCATGCTCATTCTAACGTTTACCAAGTAATCAGAAGTACTTACCTCGT
CTTTTTACCAAAGTGGGCCCGTTGGCCCATTGGCCCGTTTTCGGCCCATTAAGCCCAAAAATATC
GTTGTGCACGAAAATGCACACTCTGTACTCTAATCATCCAAATGCACCATATTCATTAACAACTG
TATCACGAGTGCTCGCACGCTCGCGAGTTCACAAAATACCAACGTTTCGATATTTCGGCTTTTAC
CGATTCAGTCTAAGGGAGGGTGTCATTTACACACCTGGTTGATGACGACTGATGACGATATCTCC
CACGCGATAATCCTACAATCGATCACTAACACATTAGACTTACGAATTAATGATAACTAACATAA
ATCCATGTCAACTAACCCAATCATCATACAAGTTAGTCATTTATCCATGAGGGGCAAAATAGTCA
TTTTACCCTTCAGGGGTAAATCGGTAGTCCTACCTTACAGGGGTATTTTAGTAATTCTACAACTT
A
Found at i:72793092 original size:873 final size:872
Alignment explanation
Indices: 72791691--72793437 Score: 3316
Period size: 873 Copynumber: 2.0 Consensus size: 872
72791681 ATGTCATGGC
72791691 ATACGTATACAGAAACAGAACATCATGCTTTTCAGAAAAAAATAACCCTAGGGGTAAAATCGTAA
1 ATACGTATACAGAAACAGAACATCATGCTTTTCAGAAAAAAATAACCCTAGGGGTAAAATCGTAA
72791756 TTTTGCATGCATAAGGGTATTTCAGTAATTATTACCTATTGCTAAGGTTTCATGCTCATTCTAAC
66 TTTTGCATGCATAAGGGTATTTCAGTAATTATTACCTATTGCTAAGGTTTCATGCTCATTCTAAC
72791821 GTTTACCAAGTAATCAGAAGTACTTACCTCGTCTTTTTACCAAAGTGGGCCCGTTGGCCCATTGG
131 GTTTACCAAGTAATCAGAAGTACTTACCTCGTCTTTTTACCAAAGTGGGCCCGTTGGCCCATTGG
72791886 CCCGTTTTCGGCCCATTAAGCCCAAAAATACCGTTGTGCACGAAAATGCACACTCTGCACTCTAA
196 CCCGTTTTCGGCCCATTAAGCCCAAAAATACCGTTGTGCACGAAAATGCACACTCTGCACTCTAA
*
72791951 TCATCCAAATGCACCATATTCATTAACAACTGTCTCACGAGCGCTCGCACGCTCGCGAGTTCACA
261 TCATCCAAATGCACCATATTCATTAACAACTGTATCACGAGCGCTCGCACGCTCGCGAGTTCACA
* *
72792016 AAATACCAACGTTTCGGTATTTCGGCTTTTACCGATTCAGTCTAAGGGAGGGTGTCGTTTACACA
326 AAATACCAACGTTTCGATATTTCGGCTTTTACCGATTCAGTCTAAGGGAGGGTGTCATTTACACA
* *
72792081 CCTGGTTGATGACGATTGATGACGATATCTCCCACGCGATAATCCTACAATCGATCACTAACACA
391 CCTGGTTGATGACGACTGATGACGATATCTCCCACGCGATAATCCTACAATCGATCACGAACACA
72792146 TTAGACTTACGAATTAACGATAACTAACATAAATCCACGTCAACTAACCCAATCATCACACAAGT
456 TTAGACTTACGAATTAACGATAACTAACATAAATCCACGTCAACTAACCCAATCATCACACAAGT
72792211 TAGTCATTTA-CGCACGAGGGGCAAAATAGTCATTTTACCCTCCAGGGGTAAATCGGTAGTCCTA
521 TAGTCATTTATC-CACGAGGGGCAAAATAGTCATTTTACCCTCCAGGGGTAAATCGGTAGTCCTA
72792275 CCCTACAGGGGTATTTTAGTAATTCTACAACTTATCCACTTGGGCCTACGGACCCATTGGGACCA
585 CCCTACAGGGGTATTTTAGTAATTCTACAACTTATCCACTTGGGCCTACGGACCCATTGGGACCA
72792340 CATGGCCCATTTCAGCCCATCGCGGCCCGAAATAGCCGTCCTACTGCTAGAGTAATGAGAAATAC
650 CAT-GCCCATTTCAGCCCATCGCGGCCCGAAATAGCCGTCCTACTGCTAGAGTAATGAGAAATAC
72792405 ACACCTATTAGGAGACTGCAGTTAATTCGTGCTCCAAACACTCTTAGCTGACGCCCAACCCAAAC
714 ACACCTATTAGGAGACTGCAGTTAATTCGTGCTCCAAACACTCTTAGCTGACGCCCAACCCAAAC
72792470 GAACACATCACAAAGCAAAAGGGATCAACCAAGAAGGTTATGCCTACTCTCCTCATGGTTTGCTC
779 GAACACATCACAAAGCAAAAGGGATCAACCAAGAAGGTTATGCCTACTCTCCTCATGGTTTGCTC
72792535 TATATAAAGCCAGCTCTCCATCTACTCTT
844 TATATAAAGCCAGCTCTCCATCTACTCTT
* *
72792564 ATACGTATACAGAAACATAACATCATGCTTTTTAGAAAAAAATAACCCTAGGGGTAAAATCGTAA
1 ATACGTATACAGAAACAGAACATCATGCTTTTCAGAAAAAAATAACCCTAGGGGTAAAATCGTAA
72792629 TTTTGCATGCATAAGGGTATTTCAGTAATTATTACCTATTGCTAAGGTTTCATGCTCATTCTAAC
66 TTTTGCATGCATAAGGGTATTTCAGTAATTATTACCTATTGCTAAGGTTTCATGCTCATTCTAAC
72792694 GTTTACCAAGTAATCAGAAGTACTTACCTCGTCTTTTTACCAAAGTGGGCCCGTTGGCCCATTGG
131 GTTTACCAAGTAATCAGAAGTACTTACCTCGTCTTTTTACCAAAGTGGGCCCGTTGGCCCATTGG
* *
72792759 CCCGTTTTCGGCCCATTAAGCCCAAAAATATCGTTGTGCACGAAAATGCACACTCTGTACTCTAA
196 CCCGTTTTCGGCCCATTAAGCCCAAAAATACCGTTGTGCACGAAAATGCACACTCTGCACTCTAA
*
72792824 TCATCCAAATGCACCATATTCATTAACAACTGTATCACGAGTGCTCGCACGCTCGCGAGTTCACA
261 TCATCCAAATGCACCATATTCATTAACAACTGTATCACGAGCGCTCGCACGCTCGCGAGTTCACA
72792889 AAATACCAACGTTTCGATATTTCGGCTTTTACCGATTCAGTCTAAGGGAGGGTGTCATTTACACA
326 AAATACCAACGTTTCGATATTTCGGCTTTTACCGATTCAGTCTAAGGGAGGGTGTCATTTACACA
72792954 CCTGGTTGATGACGACTGATGACGATATCTCCCACGCGATAATCCTACAATCGATCACGAACACA
391 CCTGGTTGATGACGACTGATGACGATATCTCCCACGCGATAATCCTACAATCGATCACGAACACA
* * *
72793019 TTAGACTTACGAATTAATGATAACTAACATAAATCCATGTCAACTAACCCAATCATCATACAAGT
456 TTAGACTTACGAATTAACGATAACTAACATAAATCCACGTCAACTAACCCAATCATCACACAAGT
* *
72793084 TAGTCATTTATCCATGAGGGGCAAAATAGTCATTTTACCCTTCAGGGGTAAATCGGTAGTCCTAC
521 TAGTCATTTATCCACGAGGGGCAAAATAGTCATTTTACCCTCCAGGGGTAAATCGGTAGTCCTAC
*
72793149 CTTACAGGGGTATTTTAGTAATTCTACAACTTATCCACTTGGGCCTACGGACCCATTGGGACCAC
586 CCTACAGGGGTATTTTAGTAATTCTACAACTTATCCACTTGGGCCTACGGACCCATTGGGACCAC
*
72793214 ATGCCTATTTCAGCCCATCGCGGCCCGAAATAGCCGTCCTACTGCTAGAGTAATGAGAAATACAC
651 ATGCCCATTTCAGCCCATCGCGGCCCGAAATAGCCGTCCTACTGCTAGAGTAATGAGAAATACAC
72793279 ACCTATTAGGAGACTGCAGTTAATTCGTGCTCCAAACACTCTTAGCTGACGCCCAACCCAAACGA
716 ACCTATTAGGAGACTGCAGTTAATTCGTGCTCCAAACACTCTTAGCTGACGCCCAACCCAAACGA
72793344 ACACATCACAAAGCAAAAGGGATCAACCAAGAAGGTTATGCCTACTCTCCTCATGGTTTGCTCTA
781 ACACATCACAAAGCAAAAGGGATCAACCAAGAAGGTTATGCCTACTCTCCTCATGGTTTGCTCTA
72793409 TATAAAGCCAGCTCTCCATCTACTCTT
846 TATAAAGCCAGCTCTCCATCTACTCTT
72793436 AT
1 AT
72793438 GTTAGCTTCC
Statistics
Matches: 856, Mismatches: 17, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
872 221 0.26
873 634 0.74
874 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (872 bp):
ATACGTATACAGAAACAGAACATCATGCTTTTCAGAAAAAAATAACCCTAGGGGTAAAATCGTAA
TTTTGCATGCATAAGGGTATTTCAGTAATTATTACCTATTGCTAAGGTTTCATGCTCATTCTAAC
GTTTACCAAGTAATCAGAAGTACTTACCTCGTCTTTTTACCAAAGTGGGCCCGTTGGCCCATTGG
CCCGTTTTCGGCCCATTAAGCCCAAAAATACCGTTGTGCACGAAAATGCACACTCTGCACTCTAA
TCATCCAAATGCACCATATTCATTAACAACTGTATCACGAGCGCTCGCACGCTCGCGAGTTCACA
AAATACCAACGTTTCGATATTTCGGCTTTTACCGATTCAGTCTAAGGGAGGGTGTCATTTACACA
CCTGGTTGATGACGACTGATGACGATATCTCCCACGCGATAATCCTACAATCGATCACGAACACA
TTAGACTTACGAATTAACGATAACTAACATAAATCCACGTCAACTAACCCAATCATCACACAAGT
TAGTCATTTATCCACGAGGGGCAAAATAGTCATTTTACCCTCCAGGGGTAAATCGGTAGTCCTAC
CCTACAGGGGTATTTTAGTAATTCTACAACTTATCCACTTGGGCCTACGGACCCATTGGGACCAC
ATGCCCATTTCAGCCCATCGCGGCCCGAAATAGCCGTCCTACTGCTAGAGTAATGAGAAATACAC
ACCTATTAGGAGACTGCAGTTAATTCGTGCTCCAAACACTCTTAGCTGACGCCCAACCCAAACGA
ACACATCACAAAGCAAAAGGGATCAACCAAGAAGGTTATGCCTACTCTCCTCATGGTTTGCTCTA
TATAAAGCCAGCTCTCCATCTACTCTT
Found at i:72794593 original size:17 final size:17
Alignment explanation
Indices: 72794553--72794596 Score: 58
Period size: 15 Copynumber: 2.7 Consensus size: 17
72794543 AAAGTTGATA
72794553 ATAATTAA-TATACATT
1 ATAATTAATTATACATT
72794569 ATAA-TAATTATA-ATT
1 ATAATTAATTATACATT
72794584 ATATATTAATTAT
1 ATA-ATTAATTAT
72794597 TATAACCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 9 0.36
16 9 0.36
17 7 0.28
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
ATAATTAATTATACATT
Found at i:72800172 original size:43 final size:42
Alignment explanation
Indices: 72800125--72800212 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 42
72800115 CAGATGAGGC
* * *
72800125 CTTACATGTAATCAAATATCGATG-CAATTATCCCAAACAGGGT
1 CTTACACGAAATCAAATAT-AATGCCAA-TATCCCAAACAGGGT
* * *
72800168 CTTACACGAAATCATATATAATGCCAATGTCCCAAACATGGT
1 CTTACACGAAATCAAATATAATGCCAATATCCCAAACAGGGT
72800210 CTT
1 CTT
72800213 TGATCGCGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 19 0.50
43 19 0.50
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.28
Consensus pattern (42 bp):
CTTACACGAAATCAAATATAATGCCAATATCCCAAACAGGGT
Found at i:72816252 original size:319 final size:319
Alignment explanation
Indices: 72815673--72816310 Score: 1276
Period size: 319 Copynumber: 2.0 Consensus size: 319
72815663 ATATTAATTT
72815673 CTATGTAGTTCATAAGTCATACATTAATGTTATCCAATACACCCATTTAATATATATAACATATT
1 CTATGTAGTTCATAAGTCATACATTAATGTTATCCAATACACCCATTTAATATATATAACATATT
72815738 AATAGAGGTAACTAAACATAATCAAATAAAGCTTTAAGGTAACTCATAGTTACGGTTTGTTAAAT
66 AATAGAGGTAACTAAACATAATCAAATAAAGCTTTAAGGTAACTCATAGTTACGGTTTGTTAAAT
72815803 AACCATCACATAAGAGATGCAACATGTTTTATCGAGTTCAAACATATCTCATCATTTTATCTTAA
131 AACCATCACATAAGAGATGCAACATGTTTTATCGAGTTCAAACATATCTCATCATTTTATCTTAA
72815868 ATATATTTCAGCCACAAATAACAACTCAATATTAAAAACATGCATAACTCGTTATATCCTCAGCC
196 ATATATTTCAGCCACAAATAACAACTCAATATTAAAAACATGCATAACTCGTTATATCCTCAGCC
72815933 TGTCATTTATTCATGAGTATCAATTTCTGCACAAGCTTTTAATATATCCGACTAAAAAC
261 TGTCATTTATTCATGAGTATCAATTTCTGCACAAGCTTTTAATATATCCGACTAAAAAC
72815992 CTATGTAGTTCATAAGTCATACATTAATGTTATCCAATACACCCATTTAATATATATAACATATT
1 CTATGTAGTTCATAAGTCATACATTAATGTTATCCAATACACCCATTTAATATATATAACATATT
72816057 AATAGAGGTAACTAAACATAATCAAATAAAGCTTTAAGGTAACTCATAGTTACGGTTTGTTAAAT
66 AATAGAGGTAACTAAACATAATCAAATAAAGCTTTAAGGTAACTCATAGTTACGGTTTGTTAAAT
72816122 AACCATCACATAAGAGATGCAACATGTTTTATCGAGTTCAAACATATCTCATCATTTTATCTTAA
131 AACCATCACATAAGAGATGCAACATGTTTTATCGAGTTCAAACATATCTCATCATTTTATCTTAA
72816187 ATATATTTCAGCCACAAATAACAACTCAATATTAAAAACATGCATAACTCGTTATATCCTCAGCC
196 ATATATTTCAGCCACAAATAACAACTCAATATTAAAAACATGCATAACTCGTTATATCCTCAGCC
72816252 TGTCATTTATTCATGAGTATCAATTTCTGCACAAGCTTTTAATATATCCGACTAAAAAC
261 TGTCATTTATTCATGAGTATCAATTTCTGCACAAGCTTTTAATATATCCGACTAAAAAC
72816311 TTTTTACATA
Statistics
Matches: 319, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
319 319 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (319 bp):
CTATGTAGTTCATAAGTCATACATTAATGTTATCCAATACACCCATTTAATATATATAACATATT
AATAGAGGTAACTAAACATAATCAAATAAAGCTTTAAGGTAACTCATAGTTACGGTTTGTTAAAT
AACCATCACATAAGAGATGCAACATGTTTTATCGAGTTCAAACATATCTCATCATTTTATCTTAA
ATATATTTCAGCCACAAATAACAACTCAATATTAAAAACATGCATAACTCGTTATATCCTCAGCC
TGTCATTTATTCATGAGTATCAATTTCTGCACAAGCTTTTAATATATCCGACTAAAAAC
Found at i:72817833 original size:56 final size:56
Alignment explanation
Indices: 72817747--72817866 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
72817737 ACAAGGGATG
72817747 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
72817803 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
72817859 ATGGGCAA
1 ATGGGCAA
72817867 NNNNNNNNNN
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:72820986 original size:119 final size:120
Alignment explanation
Indices: 72820810--72821025 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 120
72820800 TACTCGTTCA
* * *
72820810 AATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCAGTT
1 AATGCCTTCGAGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGGACTTAGCCCAGAT
*
72820875 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACC
* * * *
72820930 AATGCCTTCG-GGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCC-TTCGGATCTTAGTCCGG
1 AATGCCTTCGAGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTTCGGA-CTTAGCCCAG
* *
72820992 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
72821026 GCCCGGACAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 6 0.07
119 59 0.71
120 18 0.22
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGAGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGGACTTAGCCCAGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACC
Found at i:72821032 original size:40 final size:40
Alignment explanation
Indices: 72820789--72821032 Score: 273
Period size: 40 Copynumber: 6.1 Consensus size: 40
72820779 CGGAATTTAA
** * *
72820789 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGAGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72820829 CCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
72820869 CCAGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
72820909 TCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
72820948 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
72820988 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
72821028 CCGGA
1 CCGGA
72821033 CATCATTCAA
Statistics
Matches: 174, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 128 0.74
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72832631 original size:38 final size:40
Alignment explanation
Indices: 72832583--72832777 Score: 180
Period size: 43 Copynumber: 4.7 Consensus size: 40
72832573 ATATGTGTTA
72832583 TCGTGTAAGACCACGTCTGGGACATTGGCATCGACTT-A-
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGACTTGAT
* *
72832621 TCGTGTAAGACTACGCCTGGGACATTGGCATCGACTTATGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGAC-T-TGA-T
* * *
72832664 TACGTGTAAGACCATGTCTGGGACATTGCCATCGTATTTGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCG-ACTTGA-T
* ** *
72832707 TCGTGTAAGACC-CTGTCTGGGATAGAGGCATCGATATTTGAT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCG--ACTTGAT
* *
72832749 TACATGTAAGACCACGCCTGGGACATTGG
1 T-CGTGTAAGACCACGTCTGGGACATTGG
72832778 TATTGTACGA
Statistics
Matches: 129, Mismatches: 17, Indels: 17
0.79 0.10 0.10
Matches are distributed among these distances:
38 33 0.26
39 1 0.01
40 1 0.01
41 1 0.01
42 28 0.22
43 34 0.26
44 30 0.23
45 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGACTTGAT
Found at i:72833075 original size:8 final size:8
Alignment explanation
Indices: 72833062--72833086 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
72833052 AATTTTGATG
72833062 ATGTTTAT
1 ATGTTTAT
72833070 ATGTTTAT
1 ATGTTTAT
72833078 ATGTTTAT
1 ATGTTTAT
72833086 A
1 A
72833087 AAGTTAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (8 bp):
ATGTTTAT
Found at i:72837118 original size:15 final size:15
Alignment explanation
Indices: 72837098--72837130 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
72837088 TCGAAAATCA
72837098 TTGTCTGATGATGCT
1 TTGTCTGATGATGCT
*
72837113 TTGTCTGATGATGGT
1 TTGTCTGATGATGCT
72837128 TTG
1 TTG
72837131 ATTTTAGCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.09, G:0.30, T:0.48
Consensus pattern (15 bp):
TTGTCTGATGATGCT
Found at i:72841387 original size:68 final size:68
Alignment explanation
Indices: 72841278--72841412 Score: 261
Period size: 68 Copynumber: 2.0 Consensus size: 68
72841268 GTAGAGGAGA
*
72841278 AGGAGGCAGAGAGGCCTTTCTCTACATGATGAATGCATAGTATACGGAGTTCATTCGAACGAACC
1 AGGAGGCAAAGAGGCCTTTCTCTACATGATGAATGCATAGTATACGGAGTTCATTCGAACGAACC
72841343 CGT
66 CGT
72841346 AGGAGGCAAAGAGGCCTTTCTCTACATGATGAATGCATAGTATACGGAGTTCATTCGAACGAACC
1 AGGAGGCAAAGAGGCCTTTCTCTACATGATGAATGCATAGTATACGGAGTTCATTCGAACGAACC
72841411 CG
66 CG
72841413 AATGCTCAAC
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (68 bp):
AGGAGGCAAAGAGGCCTTTCTCTACATGATGAATGCATAGTATACGGAGTTCATTCGAACGAACC
CGT
Found at i:72850976 original size:43 final size:43
Alignment explanation
Indices: 72850853--72851009 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
72850843 TGTGTTATCA
*
72850853 TGTAAGACCACGTCTGGGACATTGGCATCGACT-TATGATTTATG
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTATG
* * ** * *
72850897 TGTAAGACCATGTTTGAAACATTGGTATCGA-ATTTGATTGTG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTATG
** **
72850939 TGTAAGACC-CTGTCTGGGACAGAGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTATG
*
72850982 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
72851010 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 27 0.30
43 35 0.39
44 27 0.30
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTATG
Found at i:72852242 original size:19 final size:19
Alignment explanation
Indices: 72852210--72852247 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
72852200 GTGTGACCTG
*
72852210 TACAACTTTGAAAAATTTT
1 TACAACTTTAAAAAATTTT
*
72852229 TACAATTTTAAAAAATTTT
1 TACAACTTTAAAAAATTTT
72852248 GTATGAGCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.45
Consensus pattern (19 bp):
TACAACTTTAAAAAATTTT
Found at i:72859532 original size:24 final size:26
Alignment explanation
Indices: 72859505--72859554 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
72859495 ATTTGTTTTC
*
72859505 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
72859529 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
72859555 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:72864263 original size:38 final size:39
Alignment explanation
Indices: 72864221--72864313 Score: 95
Period size: 38 Copynumber: 2.4 Consensus size: 39
72864211 AAAAAAACAG
*
72864221 TATATTCTTATTTTGTTAAA-ATAA-TATA-TACAAATATA
1 TATATTCTTATTTTGTTAAACAAAACTATATTA-AAATA-A
*
72864259 TATATATC-AATTTTGTTAAACAAAACTATATGTTAAAATAA
1 TATAT-TCTTATTTTGTTAAACAAAACTATA--TTAAAATAA
72864300 TATATTCTTATTTT
1 TATATTCTTATTTT
72864314 ATAGAAAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
38 16 0.36
39 5 0.11
40 6 0.13
41 11 0.24
42 5 0.11
43 2 0.04
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.47
Consensus pattern (39 bp):
TATATTCTTATTTTGTTAAACAAAACTATATTAAAATAA
Found at i:72868153 original size:18 final size:19
Alignment explanation
Indices: 72868130--72868168 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
72868120 ATATATTCAC
72868130 ACATTTTCA-CAATTCAAT
1 ACATTTTCATCAATTCAAT
72868148 ACATTTTCATTCAATTCAAT
1 ACATTTTCA-TCAATTCAAT
72868168 A
1 A
72868169 TCAATACTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (19 bp):
ACATTTTCATCAATTCAAT
Found at i:72868167 original size:57 final size:53
Alignment explanation
Indices: 72868063--72868173 Score: 127
Period size: 57 Copynumber: 2.0 Consensus size: 53
72868053 ATTCCATTTT
*
72868063 CATATTTCTCACATTTTCAATTCAATCATTTTCCACCTTTCAATCAATATTCAATC
1 CATATTTCACACATTTTCAATTCAATCATTTTCCA-C-TTCAATCAATA-TCAATC
72868119 CATATATTCACACATTTTCACAATTCAATACATTTT-CA-TTCAATTCAATATCAAT
1 CATAT-TTCACACATTTT--CAATTCAAT-CATTTTCCACTTCAA-TCAATATCAAT
72868174 ACTTACCTTA
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
56 15 0.31
57 17 0.35
59 11 0.22
60 6 0.12
ACGTcount: A:0.34, C:0.24, G:0.00, T:0.41
Consensus pattern (53 bp):
CATATTTCACACATTTTCAATTCAATCATTTTCCACTTCAATCAATATCAATC
Found at i:72868845 original size:19 final size:18
Alignment explanation
Indices: 72868809--72868843 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
72868799 TCCCTAATTT
72868809 CCTTTTTTCCTTTCTTTC
1 CCTTTTTTCCTTTCTTTC
72868827 CCTTTCTTTCC-TTCTTT
1 CCTTT-TTTCCTTTCTTT
72868844 TCTTCTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (18 bp):
CCTTTTTTCCTTTCTTTC
Found at i:72870254 original size:17 final size:18
Alignment explanation
Indices: 72870232--72870271 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
72870222 AAATCCCTAA
*
72870232 TTTCCCTTT-TTTCTTTC
1 TTTCCCTTTCTTTCCTTC
72870249 TTTCCCTTTCTTTCCTTC
1 TTTCCCTTTCTTTCCTTC
72870267 TTTCC
1 TTTCC
72870272 TTCTCTGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTCCCTTTCTTTCCTTC
Found at i:72870524 original size:16 final size:17
Alignment explanation
Indices: 72870503--72870545 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
72870493 TATTTATTTT
72870503 ATTTAATAATAAT-ATA
1 ATTTAATAATAATAATA
72870519 ATTTAAT-ATAATAATA
1 ATTTAATAATAATAATA
*
72870535 ATCTAATAATA
1 ATTTAATAATA
72870546 TATTTTAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 5 0.21
16 16 0.67
17 3 0.12
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
ATTTAATAATAATAATA
Found at i:72874916 original size:18 final size:18
Alignment explanation
Indices: 72874893--72874928 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
72874883 CAAAATAGTT
* *
72874893 TATGCATATGTATGTATG
1 TATGCAAATGTATATATG
72874911 TATGCAAATGTATATATG
1 TATGCAAATGTATATATG
72874929 CAGATGTACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (18 bp):
TATGCAAATGTATATATG
Found at i:72883165 original size:36 final size:36
Alignment explanation
Indices: 72883118--72883205 Score: 142
Period size: 36 Copynumber: 2.4 Consensus size: 36
72883108 CGACGGACGA
*
72883118 GATGGAGTTCCCGAACTCCTTGAAGGTGGTGGTCGC
1 GATGGAGTTCCCGAACTCCTCGAAGGTGGTGGTCGC
*
72883154 GATGGATTTCCCGAACTCCTCGAAGGTGGTGGTCGC
1 GATGGAGTTCCCGAACTCCTCGAAGGTGGTGGTCGC
72883190 GATGGAG-TCCCTGAAC
1 GATGGAGTTCCC-GAAC
72883206 CTCTTGGAGT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
35 4 0.08
36 44 0.92
ACGTcount: A:0.18, C:0.24, G:0.34, T:0.24
Consensus pattern (36 bp):
GATGGAGTTCCCGAACTCCTCGAAGGTGGTGGTCGC
Found at i:72887910 original size:39 final size:40
Alignment explanation
Indices: 72887815--72888076 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
72887805 TTGAATGATG
*
72887815 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
72887853 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
72887894 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
72887933 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
72887972 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
72888011 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
72888050 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
72888077 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:72895302 original size:109 final size:109
Alignment explanation
Indices: 72895182--72895398 Score: 407
Period size: 109 Copynumber: 2.0 Consensus size: 109
72895172 TGGTTAATAT
72895182 ATATAAGCCATGCGAAAATGGCATCTTTTGAATGTTTACTTAGTGAAGTTTAAATTTTACCTCTG
1 ATATAAGCCATGCGAAAATGGCATCTTTTGAATGTTTACTTAGTGAAGTTTAAATTTTACCTCTG
*
72895247 GCTGTACTTAGTACTTATGTAAATGAACGATCTTTATTTCAAGG
66 GCTGTACTTAGTACGTATGTAAATGAACGATCTTTATTTCAAGG
72895291 ATATAAGCCATGCGAAAATGGCATCTTTTGAATGTTTACTTAGTGAAGTTTAAATTTTACCTCTG
1 ATATAAGCCATGCGAAAATGGCATCTTTTGAATGTTTACTTAGTGAAGTTTAAATTTTACCTCTG
* *
72895356 GCTGTGCTTAGTACGTATTTAAATGAACGATCTTTATTTCAAG
66 GCTGTACTTAGTACGTATGTAAATGAACGATCTTTATTTCAAG
72895399 AAAAAGTTCA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
109 105 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (109 bp):
ATATAAGCCATGCGAAAATGGCATCTTTTGAATGTTTACTTAGTGAAGTTTAAATTTTACCTCTG
GCTGTACTTAGTACGTATGTAAATGAACGATCTTTATTTCAAGG
Found at i:72895919 original size:221 final size:219
Alignment explanation
Indices: 72895502--72895939 Score: 831
Period size: 221 Copynumber: 2.0 Consensus size: 219
72895492 ATTTTATTGG
72895502 TATCAGAGCTACGATTTAGTCGATTCTAGGACTAACGTAGCACGCGTGAGTCTATTTATACATGC
1 TATCAGAGCTACGATTTAGTCGATTCTAGGACTAACGTAGCACGCGTGAGTCTATTTATACATGC
72895567 CATAAAGTGATAAAATGATAGTGTGATGATTTTACTATTAAAATGTGTTTGCTGTATTGTAATGA
66 CATAAAGTGATAAAATGATAGTGTGATGATTTTACTATTAAAATGTGTTTGCTGTATTGTAATGA
*
72895632 ATCTTGATCCCGATCAAGCTGTAGCAAGCTTCTGACTATGAGAATTTGTGATATAACTTCACTTA
131 ATCTTGATCCCGATCAAGCTGTAGCAAGCTTCTGACTATGAGAATTTGCGATATAACTTCACTTA
72895697 GATATGCCTAAATTATTAAGTTAT
196 GATATGCCTAAATTATTAAGTTAT
*
72895721 TATCAGAGCTACGATTTAGTCGATTCTAGGACTAACGTAGCACGCGTGAGTCTATTTATACATGG
1 TATCAGAGCTACGATTTAGTCGATTCTAGGACTAACGTAGCACGCGTGAGTCTATTTATACATGC
72895786 CATAAAGTGATAAAATGATAGTGTGATGATTTTTGACTATTAAAATGTGTTTGCTGTATTGTAAT
66 CATAAAGTGATAAAATGATAGTGTGATGA-TTTT-ACTATTAAAATGTGTTTGCTGTATTGTAAT
*
72895851 GAATCTTGATCCTGATCAAGCTGTAGCAAGCTTCTGACTATGAGAATTTGCGATATAACTTCACT
129 GAATCTTGATCCCGATCAAGCTGTAGCAAGCTTCTGACTATGAGAATTTGCGATATAACTTCACT
72895916 TAGATATGCCTAAATTATTAAGTT
194 TAGATATGCCTAAATTATTAAGTT
72895940 GATCAGGTAT
Statistics
Matches: 214, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
219 93 0.43
220 4 0.02
221 117 0.55
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (219 bp):
TATCAGAGCTACGATTTAGTCGATTCTAGGACTAACGTAGCACGCGTGAGTCTATTTATACATGC
CATAAAGTGATAAAATGATAGTGTGATGATTTTACTATTAAAATGTGTTTGCTGTATTGTAATGA
ATCTTGATCCCGATCAAGCTGTAGCAAGCTTCTGACTATGAGAATTTGCGATATAACTTCACTTA
GATATGCCTAAATTATTAAGTTAT
Found at i:72896222 original size:40 final size:40
Alignment explanation
Indices: 72896167--72896289 Score: 228
Period size: 40 Copynumber: 3.1 Consensus size: 40
72896157 GAGAATTGAG
72896167 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72896207 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72896247 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72896287 AGT
1 AGT
72896290 ACACTCGTGC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:72896350 original size:40 final size:40
Alignment explanation
Indices: 72896306--72896384 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
72896296 GTGCTAGTAA
* * *
72896306 TATATCCGTGCTA-AACCTCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAGAACC-CGAAGAGCAATCATGCTGGTGT
**
72896346 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAGAACCCGAAGAGCAATCATGCTGGTG
72896385 ACGTGTATTC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAGAACCCGAAGAGCAATCATGCTGGTGT
Found at i:72896365 original size:94 final size:94
Alignment explanation
Indices: 72896200--72896372 Score: 258
Period size: 94 Copynumber: 1.8 Consensus size: 94
72896190 CGAAGAGCAT
* * *
72896200 TCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTA
1 TCGTGCTAGTAATATATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTA
72896265 AATCCCGAAGAGCATTCGTGCTAGTACAC
66 AATCCCGAAGAGCATTCGTGCTAGTACAC
* * *
72896294 TCGTGCTAGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCT
1 TCGTGCTAGTAATATATCCGGGCTAAGACC-CGAAGAGCATTCGTGCTAGTGATATATCCGGGCT
**
72896358 AGGTCCCGAAGAGCA
65 AAATCCCGAAGAGCA
72896373 ATCATGCTGG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
93 2 0.03
94 68 0.97
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (94 bp):
TCGTGCTAGTAATATATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTA
AATCCCGAAGAGCATTCGTGCTAGTACAC
Found at i:72899198 original size:66 final size:66
Alignment explanation
Indices: 72899092--72899223 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 66
72899082 TAGTTATTAA
72899092 GGTCATTTGTAGCTTAACTATATGATATACATGTATTAAATTAAATTGCCTATTTGATAAGTGAT
1 GGTCATTTGTAGCTTAACTATATGATATACATGTATTAAATTAAATTGCCTATTTGATAAGTGAT
72899157 T
66 T
* *
72899158 GGTCATTTGTAGCTTAACTATATGGTATACATGTATTAAATTAAATTTCCTATTTGATAAGTGAT
1 GGTCATTTGTAGCTTAACTATATGATATACATGTATTAAATTAAATTGCCTATTTGATAAGTGAT
72899223 T
66 T
72899224 AAATAGTAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (66 bp):
GGTCATTTGTAGCTTAACTATATGATATACATGTATTAAATTAAATTGCCTATTTGATAAGTGAT
T
Found at i:72899927 original size:55 final size:55
Alignment explanation
Indices: 72899861--72899971 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 55
72899851 CAGTTATAAA
*
72899861 TAATTTAGTGACTATTGCGCAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGT
1 TAATTTAGTGACTATTGCGAAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGT
*
72899916 TAATTTAGTGACTATTGCTAAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGT
1 TAATTTAGTGACTATTGCGAAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGT
72899971 T
1 T
72899972 GTGAACCTTG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.36
Consensus pattern (55 bp):
TAATTTAGTGACTATTGCGAAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGT
Found at i:72900138 original size:47 final size:47
Alignment explanation
Indices: 72900083--72900276 Score: 237
Period size: 47 Copynumber: 4.1 Consensus size: 47
72900073 GAAATGATAG
*
72900083 TAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
* *
72900130 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
* *
72900177 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
* * * * * * * *
72900226 -CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
72900273 TAAG
1 TAAG
72900277 TCCCGAAGGG
Statistics
Matches: 129, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
47 88 0.68
48 7 0.05
49 34 0.26
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
Found at i:72900271 original size:96 final size:94
Alignment explanation
Indices: 72900083--72900276 Score: 273
Period size: 96 Copynumber: 2.0 Consensus size: 94
72900073 GAAATGATAG
* * * *
72900083 TAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGACAGGGCCTAATGGCCAAC
*
72900148 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATAAATGTGA
* * *
72900177 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGG-CTGAGTGGCC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGACAGGGCCT-AATGGCC
*
72900241 AACGTGATGGATGTGAAAGTGTATAAATGTGA
63 AACGTGATGAATGTGAAAGTGTATAAATGTGA
72900273 TAAG
1 TAAG
72900277 TCCCGAAGGG
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
94 34 0.39
95 2 0.02
96 52 0.59
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.28
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGACAGGGCCTAATGGCCAAC
GTGATGAATGTGAAAGTGTATAAATGTGA
Found at i:72900451 original size:37 final size:37
Alignment explanation
Indices: 72900395--72900473 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
72900385 CCGAGCTCTA
* * *
72900395 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
72900432 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
72900469 AAGAC
1 AAGAC
72900474 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:72901841 original size:27 final size:28
Alignment explanation
Indices: 72901804--72901918 Score: 121
Period size: 28 Copynumber: 4.2 Consensus size: 28
72901794 AGCATGGCTG
*
72901804 CCAGAA-CAGATA-TTGTGACAGAGTCA
1 CCAGAATCAGATATTTGTGACAGAGCCA
* *
72901830 CCAGATTCAGATA-TTGTGGCAGAGCCA
1 CCAGAATCAGATATTTGTGACAGAGCCA
* * * *
72901857 CCGGAAACAAATATTTGTAACAGAGCCA
1 CCAGAATCAGATATTTGTGACAGAGCCA
*
72901885 CCAGAAAT-AGATATTTGTGGCAGAGCCA
1 CCAG-AATCAGATATTTGTGACAGAGCCA
72901913 CCAGAA
1 CCAGAA
72901919 CGCTTCCTCC
Statistics
Matches: 72, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
26 5 0.07
27 29 0.40
28 36 0.50
29 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (28 bp):
CCAGAATCAGATATTTGTGACAGAGCCA
Found at i:72901897 original size:55 final size:55
Alignment explanation
Indices: 72901808--72901914 Score: 146
Period size: 55 Copynumber: 1.9 Consensus size: 55
72901798 TGGCTGCCAG
* * * *
72901808 AACAGATATTGTGACAGAGTCACCAGATTCAGATA-TTGTGGCAGAGCCACCGGA
1 AACAAATATTGTAACAGAGCCACCAGAATCAGATATTTGTGGCAGAGCCACCGGA
72901862 AACAAATATTTGTAACAGAGCCACCAGAAAT-AGATATTTGTGGCAGAGCCACC
1 AACAAATA-TTGTAACAGAGCCACCAG-AATCAGATATTTGTGGCAGAGCCACC
72901915 AGAACGCTTC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
54 7 0.15
55 21 0.46
56 18 0.39
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (55 bp):
AACAAATATTGTAACAGAGCCACCAGAATCAGATATTTGTGGCAGAGCCACCGGA
Found at i:72905695 original size:28 final size:28
Alignment explanation
Indices: 72905662--72905730 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 28
72905652 ATATTGTGGT
72905662 AGAGCCACCAGAAACAGATATTTGTAAC
1 AGAGCCACCAGAAACAGATATTTGTAAC
* * **
72905690 AGAGCCACCAAAAACATATATTTGTGGC
1 AGAGCCACCAGAAACAGATATTTGTAAC
72905718 AGAGCCACCAGAA
1 AGAGCCACCAGAA
72905731 CGCTTCCTCC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.16
Consensus pattern (28 bp):
AGAGCCACCAGAAACAGATATTTGTAAC
Found at i:72905862 original size:26 final size:27
Alignment explanation
Indices: 72905833--72905896 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
72905823 CAAAATTAAC
*
72905833 CCTAGGGGTATAATGGTAATTTT-ACA
1 CCTAGGGGTATAACGGTAATTTTCACA
* * *
72905859 CCTAAGGGTATAACGGTAGTTTTCATA
1 CCTAGGGGTATAACGGTAATTTTCACA
*
72905886 CTTAGGGGTAT
1 CCTAGGGGTAT
72905897 TTTAGTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
26 20 0.65
27 11 0.35
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATAACGGTAATTTTCACA
Found at i:72918915 original size:48 final size:47
Alignment explanation
Indices: 72918810--72919202 Score: 189
Period size: 48 Copynumber: 8.3 Consensus size: 47
72918800 TTATTTGTTT
* * *
72918810 GCTAGTGTCAGA-CATGTCTGGGACAT-GCATTGGCCACATT-A-TGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCA-T--CGACATTGAGAGAGA
*
72918856 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGA-GAGA
* * * * * *
72918904 GCTAGTGTAAGA-CATGTCTAGGACAT-TCATTGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGA-G-AGA
* * ** *
72918950 GCTAGTGTAAGA-GATGTCTGGGACAT-GCATCGGC-TACA-AGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAGA-GA
* * * *
72918994 GTTAGTGTAAGACCATATCTGGGACATGGCAT-TAGCA-TGTATAGAG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTG-AGAGAGA
* *
72919040 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGA-A-A
1 G-CT-AGTGTAAGACCATGTCTGGGACATGGCATC-G-AC--AT-TGAGAGAGA
* * * ** *
72919092 GCTAGTGTAAGACCATGT-TGGGACAT-GCTGTC-AAACTCGATTTCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGC-ATCGACA-TTGA--GAGAGA
*
72919140 GTTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATG-GATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGA-GAGA-GA
72919187 GCTAGTGTAAGACCAT
1 GCTAGTGTAAGACCAT
72919203 CTCATTATAC
Statistics
Matches: 268, Mismatches: 45, Indels: 67
0.71 0.12 0.18
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 14 0.05
45 21 0.08
46 62 0.23
47 50 0.19
48 72 0.27
49 20 0.07
50 19 0.07
51 2 0.01
52 3 0.01
53 1 0.00
54 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAGAGA
Found at i:72918961 original size:46 final size:46
Alignment explanation
Indices: 72918810--72919026 Score: 183
Period size: 46 Copynumber: 4.7 Consensus size: 46
72918800 TTATTTGTTT
* * *
72918810 GCTAGTGTCAGACATGTCTGGGACATGCATTGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGA-GATGAGA
* * * * * *
72918856 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGATGAGA
* *
72918904 GCTAGTGTAAGACATGTCTAGGACATTCATTGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATG-AGA
* * * *
72918950 GCTAGTGTAAGAGATGTCTGGGACATGCATCGG-CTACAAGAT--GT
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCT-CGAGATGAGA
* *
72918994 GTTAGTGTAAGACCATATCTGGGACATGGCATT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATT
72919027 AGCATGTATA
Statistics
Matches: 136, Mismatches: 27, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 60 0.44
47 28 0.21
48 22 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGAGA
Found at i:72922513 original size:38 final size:38
Alignment explanation
Indices: 72922471--72922643 Score: 197
Period size: 38 Copynumber: 4.5 Consensus size: 38
72922461 GGCTTAAAGA
*
72922471 CCCGCAGG-TTATATGCTGGAATTATATCTGGGTTAAAT
1 CCCGCAGGCTT-TGTGCTGGAATTATATCTGGGTTAAAT
72922509 CCCGCAGGCTTTGTGCTGGTAA-TATATCTGGGTTAAAT
1 CCCGCAGGCTTTGTGCTGG-AATTATATCTGGGTTAAAT
* * * *
72922547 CCCGCAAGCTTCGTGCTGGTATTATATCAGGGTTAAAT
1 CCCGCAGGCTTTGTGCTGGAATTATATCTGGGTTAAAT
* * * *
72922585 CCCGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGT
1 CCCGCAGGCTTTGTGCTGGAATTATATCTG-GGTTAAA-T
* *
72922625 CCCGTAGGCTTCGTGCTGG
1 CCCGCAGGCTTTGTGCTGG
72922644 TGTTATGTTT
Statistics
Matches: 117, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
37 1 0.01
38 89 0.76
39 10 0.09
40 17 0.15
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.32
Consensus pattern (38 bp):
CCCGCAGGCTTTGTGCTGGAATTATATCTGGGTTAAAT
Found at i:72922571 original size:76 final size:78
Alignment explanation
Indices: 72922484--72922658 Score: 237
Period size: 76 Copynumber: 2.3 Consensus size: 78
72922474 GCAGGTTATA
* * *
72922484 TGCTGGAATTATATCTGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCTG-GGTTAAA-T
1 TGCTGGTATTATATCTGGGTTAAATCCCGCAGGCCTAGTGCTGGTAATATATCTGAGGTTAAAGT
72922547 CCCGCAAGCTTCG
66 CCCGCAAGCTTCG
* * *
72922560 TGCTGGTATTATATCAGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGT
1 TGCTGGTATTATATCTGGGTTAAATCCCGCAGGCCTAGTGCTGGTAATATATCTGAGGTTAAAGT
* *
72922625 CCCGTAGGCTTCG
66 CCCGCAAGCTTCG
* * *
72922638 TGCTGGTGTTATGTTTGGGTT
1 TGCTGGTATTATATCTGGGTT
72922659 TTATACCTCG
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
76 50 0.59
77 6 0.07
78 29 0.34
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (78 bp):
TGCTGGTATTATATCTGGGTTAAATCCCGCAGGCCTAGTGCTGGTAATATATCTGAGGTTAAAGT
CCCGCAAGCTTCG
Found at i:72925610 original size:93 final size:93
Alignment explanation
Indices: 72925451--72925623 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
72925441 GGGATATTTG
* * *
72925451 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCGTCCGAACTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
72925516 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
72925544 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
72925608 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
72925624 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:72925628 original size:46 final size:47
Alignment explanation
Indices: 72925455--72925630 Score: 184
Period size: 46 Copynumber: 3.8 Consensus size: 47
72925445 TATTTGGGCA
* * *
72925455 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCG-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
72925501 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
72925547 ATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 -TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
72925595 T-CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72925631 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.55
47 29 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (47 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:72927099 original size:145 final size:145
Alignment explanation
Indices: 72926836--72927105 Score: 540
Period size: 145 Copynumber: 1.9 Consensus size: 145
72926826 GTCTAGAAAT
72926836 TTTAAAATAAATTGTATGAGCTGTTTAAGTAATGAATTAAGTCCGTTAACACCTCATGTTCGACT
1 TTTAAAATAAATTGTATGAGCTGTTTAAGTAATGAATTAAGTCCGTTAACACCTCATGTTCGACT
72926901 CCGGAAATGGTCTCGGGTACGGGGCGTTACAGATATGCTATATGAAATGTATTAAAATGTGAATA
66 CCGGAAATGGTCTCGGGTACGGGGCGTTACAGATATGCTATATGAAATGTATTAAAATGTGAATA
72926966 AATATGCATGAAAAC
131 AATATGCATGAAAAC
72926981 TTTAAAATAAATTGTATGAGCTGTTTAAGTAATGAATTAAGTCCGTTAACACCTCATGTTCGACT
1 TTTAAAATAAATTGTATGAGCTGTTTAAGTAATGAATTAAGTCCGTTAACACCTCATGTTCGACT
72927046 CCGGAAATGGTCTCGGGTACGGGGCGTTACAGATATGCTATATGAAATGTATTAAAATGT
66 CCGGAAATGGTCTCGGGTACGGGGCGTTACAGATATGCTATATGAAATGTATTAAAATGT
72927106 CGTGCCTAGC
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
145 125 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (145 bp):
TTTAAAATAAATTGTATGAGCTGTTTAAGTAATGAATTAAGTCCGTTAACACCTCATGTTCGACT
CCGGAAATGGTCTCGGGTACGGGGCGTTACAGATATGCTATATGAAATGTATTAAAATGTGAATA
AATATGCATGAAAAC
Found at i:72927153 original size:43 final size:43
Alignment explanation
Indices: 72927105--72927336 Score: 439
Period size: 43 Copynumber: 5.4 Consensus size: 43
72927095 TATTAAAATG
72927105 TCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCT
1 TCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCT
*
72927148 TCGTGCCTAGCAGGCTTTGTG-CGGTGATGTGTATTCGGGCCT
1 TCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCT
72927190 TCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCT
1 TCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCT
72927233 TCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCT
1 TCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCT
*
72927276 TCGTGCCTAGCAAGCTTCGTGCCGGTGATGTGTATTCGGGCCT
1 TCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCT
72927319 TCGTGCCTAGCAGGCTTC
1 TCGTGCCTAGCAGGCTTC
72927337 ATGCTGGTAA
Statistics
Matches: 184, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
42 41 0.22
43 143 0.78
ACGTcount: A:0.10, C:0.25, G:0.34, T:0.31
Consensus pattern (43 bp):
TCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCT
Found at i:72928095 original size:40 final size:41
Alignment explanation
Indices: 72928048--72928140 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 41
72928038 CTTGGTTTCA
* ** *
72928048 CACACTTAGTGCCTA-ATATTGTGGAAGCTATTCCAATTCG
1 CACACTTAGTGCCTACATATAGCCGAAGCTATTCCAAATCG
* * *
72928088 CACACTTAGTG-CTACTTATAGCCGAATCTATTTCAAATCG
1 CACACTTAGTGCCTACATATAGCCGAAGCTATTCCAAATCG
72928128 CACACTTAGTGCC
1 CACACTTAGTGCC
72928141 GAACATAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
39 3 0.07
40 40 0.91
41 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (41 bp):
CACACTTAGTGCCTACATATAGCCGAAGCTATTCCAAATCG
Found at i:72929431 original size:8 final size:7
Alignment explanation
Indices: 72929398--72929430 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
72929388 CAAACGATAG
72929398 AAAATTTT
1 AAAA-TTT
72929406 AAAATTT
1 AAAATTT
72929413 AAAATTT
1 AAAATTT
72929420 AAAATTT
1 AAAATTT
72929427 AAAA
1 AAAA
72929431 ACAACCTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.84
8 4 0.16
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
AAAATTT
Found at i:72930725 original size:292 final size:292
Alignment explanation
Indices: 72930201--72930783 Score: 1157
Period size: 292 Copynumber: 2.0 Consensus size: 292
72930191 TGGTTGGGGA
72930201 TTTCCTGCAGAGATGAAAATAAAGGGTGAGCTCGGTAAACTTAGTGTGTAACATAACCCAACCAT
1 TTTCCTGCAGAGATGAAAATAAAGGGTGAGCTCGGTAAACTTAGTGTGTAACATAACCCAACCAT
72930266 AGCCCAAAACAGATCAAACCTCAGACTCAGACTTATCTGGGCCTTGGCCGAGTACAGAAATCAGA
66 AGCCCAAAACAGATCAAACCTCAGACTCAGACTTATCTGGGCCTTGGCCGAGTACAGAAATCAGA
72930331 ATGAAACCCTTAGGCCCATAGCAGATACAGAACAAATATATCATGAATGTAGAAATCCCAACCCA
131 ATGAAACCCTTAGGCCCATAGCAGATACAGAACAAATATATCATGAATGTAGAAATCCCAACCCA
72930396 GAGCCATCCATAACACCCCCGTACCAGCCTTACACCATGTGGGGAGACTACTCGAGCCACCCAAT
196 GAGCCATCCATAACACCCCCGTACCAGCCTTACACCATGTGGGGAGACTACTCGAGCCACCCAAT
*
72930461 CGCTACACACCATAGAAATTGCAGCGAGACTT
261 CGCTACACACCACAGAAATTGCAGCGAGACTT
72930493 TTTCCTGCAGAGATGAAAATAAAGGGTGAGCTCGGTAAACTTAGTGTGTAACATAACCCAACCAT
1 TTTCCTGCAGAGATGAAAATAAAGGGTGAGCTCGGTAAACTTAGTGTGTAACATAACCCAACCAT
72930558 AGCCCAAAACAGATCAAACCTCAGACTCAGACTTATCTGGGCCTTGGCCGAGTACAGAAATCAGA
66 AGCCCAAAACAGATCAAACCTCAGACTCAGACTTATCTGGGCCTTGGCCGAGTACAGAAATCAGA
72930623 ATGAAACCCTTAGGCCCATAGCAGATACAGAACAAATATATCATGAATGTAGAAATCCCAACCCA
131 ATGAAACCCTTAGGCCCATAGCAGATACAGAACAAATATATCATGAATGTAGAAATCCCAACCCA
72930688 GAGCCATCCATAACACCCCCGTACCAGCCTTACACCATGTGGGGAGACTACTCGAGCCACCCAAT
196 GAGCCATCCATAACACCCCCGTACCAGCCTTACACCATGTGGGGAGACTACTCGAGCCACCCAAT
72930753 CGCTACACACCACAGAAATTGCAGCGAGACT
261 CGCTACACACCACAGAAATTGCAGCGAGACT
72930784 GCCAGATATT
Statistics
Matches: 290, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
292 290 1.00
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.19
Consensus pattern (292 bp):
TTTCCTGCAGAGATGAAAATAAAGGGTGAGCTCGGTAAACTTAGTGTGTAACATAACCCAACCAT
AGCCCAAAACAGATCAAACCTCAGACTCAGACTTATCTGGGCCTTGGCCGAGTACAGAAATCAGA
ATGAAACCCTTAGGCCCATAGCAGATACAGAACAAATATATCATGAATGTAGAAATCCCAACCCA
GAGCCATCCATAACACCCCCGTACCAGCCTTACACCATGTGGGGAGACTACTCGAGCCACCCAAT
CGCTACACACCACAGAAATTGCAGCGAGACTT
Found at i:72931053 original size:226 final size:226
Alignment explanation
Indices: 72930655--72931112 Score: 909
Period size: 226 Copynumber: 2.0 Consensus size: 226
72930645 AGATACAGAA
72930655 CAAA-TATATCATGAATGTAGAAATCCCAACCCAGAGCCATCCATAACACCCCCGTACCAGCCTT
1 CAAATTATATCATGAATGTAGAAATCCCAACCCAGAGCCATCCATAACACCCCCGTACCAGCCTT
72930719 ACACCATGTGGGGAGACTACTCGAGCCACCCAATCGCTACACACCACAGAAATTGCAGCGAGACT
66 ACACCATGTGGGGAGACTACTCGAGCCACCCAATCGCTACACACCACAGAAATTGCAGCGAGACT
72930784 GCCAGATATTGTGACGAAGTCACCTGATACTGTAACGCCCCCACGCCCGAAACTGTCGCCGGAGT
131 GCCAGATATTGTGACGAAGTCACCTGATACTGTAACGCCCCCACGCCCGAAACTGTCGCCGGAGT
72930849 TGAGCTTGAGGAGTTATCGAACATAATTTAT
196 TGAGCTTGAGGAGTTATCGAACATAATTTAT
72930880 CAAATTATATCATGAATGTAGAAATCCCAACCCAGAGCCATCCATAACACCCCCGTACCAGCCTT
1 CAAATTATATCATGAATGTAGAAATCCCAACCCAGAGCCATCCATAACACCCCCGTACCAGCCTT
72930945 ACACCATGTGGGGAGACTACTCGAGCCACCCAATCGCTACACACCACAGAAATTGCAGCGAGACT
66 ACACCATGTGGGGAGACTACTCGAGCCACCCAATCGCTACACACCACAGAAATTGCAGCGAGACT
72931010 GCCAGATATTGTGACGAAGTCACCTGATACTGTAACGCCCCCACGCCCGAAACTGTCGCCGGAGT
131 GCCAGATATTGTGACGAAGTCACCTGATACTGTAACGCCCCCACGCCCGAAACTGTCGCCGGAGT
72931075 TGAGCTTGAGGAGTTATCGAACATAATTTAT
196 TGAGCTTGAGGAGTTATCGAACATAATTTAT
72931106 CAAATTA
1 CAAATTA
72931113 AGAACTTCAA
Statistics
Matches: 232, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
225 4 0.02
226 228 0.98
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.20
Consensus pattern (226 bp):
CAAATTATATCATGAATGTAGAAATCCCAACCCAGAGCCATCCATAACACCCCCGTACCAGCCTT
ACACCATGTGGGGAGACTACTCGAGCCACCCAATCGCTACACACCACAGAAATTGCAGCGAGACT
GCCAGATATTGTGACGAAGTCACCTGATACTGTAACGCCCCCACGCCCGAAACTGTCGCCGGAGT
TGAGCTTGAGGAGTTATCGAACATAATTTAT
Found at i:72932368 original size:46 final size:46
Alignment explanation
Indices: 72932301--72932426 Score: 200
Period size: 46 Copynumber: 2.7 Consensus size: 46
72932291 AACCCGCCCC
* * * *
72932301 TAAGTGAACTCGAACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
72932347 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
72932393 TAAGTGAACTC-AGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGA-ACTCAACTCAACGAGTTCGGA
72932427 TGCTCAACCA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 1 0.01
46 74 0.99
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:72933777 original size:33 final size:32
Alignment explanation
Indices: 72933717--72933781 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 32
72933707 TCAGGATATT
* *
72933717 ACAGATACAGATATTGTGGCTAGGCCACCAGA
1 ACAGATACAGATATTGTGGCGAAGCCACCAGA
* *
72933749 ACAGATATATATATATGTGGCGAAGCCACCAGA
1 ACAGATACAGATAT-TGTGGCGAAGCCACCAGA
72933782 TTGAAGCGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
ACAGATACAGATATTGTGGCGAAGCCACCAGA
Found at i:72940761 original size:36 final size:36
Alignment explanation
Indices: 72940714--72940787 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
72940704 TCATCCATGG
72940714 TTCTTCCACACGGGTATGTCGTACGCCTATGTTGTT
1 TTCTTCCACACGGGTATGTCGTACGCCTATGTTGTT
72940750 TTCTTCCACACGGGTATGTCGTACGCCTATGTTGTT
1 TTCTTCCACACGGGTATGTCGTACGCCTATGTTGTT
72940786 TT
1 TT
72940788 GGCAGGCTCG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.14, C:0.24, G:0.22, T:0.41
Consensus pattern (36 bp):
TTCTTCCACACGGGTATGTCGTACGCCTATGTTGTT
Found at i:72948502 original size:38 final size:38
Alignment explanation
Indices: 72948459--72948620 Score: 225
Period size: 38 Copynumber: 4.2 Consensus size: 38
72948449 TGTATATCAA
*
72948459 GGTTAAATCCCGTAGGCTTCGTGCTGGTATTATATCCG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCG
* * *
72948497 GGTTAAATCCCGTAGGCTTTGTGCTGGTATTATATCTG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCG
* **
72948535 GGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAATATCCG
1 GG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCG
*
72948575 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCA
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCG
*
72948613 GGATAAAT
1 GGTTAAAT
72948621 ATTATATTCA
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 72 0.66
39 10 0.09
40 27 0.25
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.31
Consensus pattern (38 bp):
GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCG
Found at i:72948560 original size:78 final size:78
Alignment explanation
Indices: 72948467--72948610 Score: 243
Period size: 78 Copynumber: 1.8 Consensus size: 78
72948457 AAGGTTAAAT
* ** * *
72948467 CCCGTAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGTAGGCTTTGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATAT
72948532 CTGGGCTTAAAGA
66 CTGGGCTTAAAGA
72948545 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATAT
72948610 C
66 C
72948611 CAGGATAAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 61 1.00
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.32
Consensus pattern (78 bp):
CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATAT
CTGGGCTTAAAGA
Found at i:72948702 original size:43 final size:43
Alignment explanation
Indices: 72948625--72948706 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
72948615 ATAAATATTA
* * **
72948625 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCAGGCCTTCATGCCTAGCAGGCGTAATGCCGGTGATGTG
*
72948668 TATTCGGGCCTTCATGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCAGGCCTTCATGCCTAGCAGGCGTAATGCCGGTGA
72948707 AATGATATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.28
Consensus pattern (43 bp):
TATTCAGGCCTTCATGCCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:72949090 original size:45 final size:42
Alignment explanation
Indices: 72949023--72949130 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
72949013 TTGACTTGAT
* *
72949023 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
72949068 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
72949110 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
72949131 ACAGGCGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:72956040 original size:40 final size:40
Alignment explanation
Indices: 72955984--72956160 Score: 268
Period size: 40 Copynumber: 4.5 Consensus size: 40
72955974 CGGATGATAA
72955984 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
72956024 ACGGGCTAAGACCCGAAGGTATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
72956064 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
72956104 CCGGGCTAGGACCCGAAGGCATTTGTACGAGTTGTTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
72956143 CCCGGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
72956161 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 14 0.11
40 110 0.88
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:72956429 original size:22 final size:22
Alignment explanation
Indices: 72956387--72956430 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
72956377 AAAGTGTGCA
* *
72956387 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATTAACTTAGC
72956409 TATATGAATGTTA-TAACTTAGC
1 TATATGAA-GTTATTAACTTAGC
72956431 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATTAACTTAGC
Found at i:72964259 original size:23 final size:23
Alignment explanation
Indices: 72964229--72964274 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
72964219 CCGGGCTAAG
*
72964229 ACCCGAAGGTATTTGTGCGAGTT
1 ACCCGAAGGCATTTGTGCGAGTT
72964252 ACCCGAAGGCATTTGTGCGAGTT
1 ACCCGAAGGCATTTGTGCGAGTT
72964275 GCTGTATCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (23 bp):
ACCCGAAGGCATTTGTGCGAGTT
Found at i:72964288 original size:63 final size:63
Alignment explanation
Indices: 72964189--72964314 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
72964179 CCGGGCTAAG
* *
72964189 ACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGTATTTGTGCGAGTT
1 ACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTT
* *
72964252 ACCCGAAGGCATTTGTGCGAGTTGCTGTATCCGGGCTAGGACCCGAAGGCATTTGTACGAGTT
1 ACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTT
72964315 GTTATATCCG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.26
Consensus pattern (63 bp):
ACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTT
Found at i:72964607 original size:22 final size:22
Alignment explanation
Indices: 72964565--72964607 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
72964555 AAAGTGTGCA
* *
72964565 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
72964587 TATATGAATGTTATAC-CTTAG
1 TATATGAA-GTTATACACTTAG
72964608 GCGAAACTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:72965902 original size:250 final size:250
Alignment explanation
Indices: 72965461--72965929 Score: 877
Period size: 250 Copynumber: 1.9 Consensus size: 250
72965451 AATTGGCTCA
* *
72965461 ACCAAAAATTCTAGAAAAAAATTTGCAGATGGACATATGAGTCTAGTTTTAGGAAAAATTTACGG
1 ACCAAAAATTCTAGAAAAAAATTTGCAGATGGAAATATGAGTCTAGTTTCAGGAAAAATTTACGG
72965526 AATCAGTTTTAGAGTTTTGGAACTCGAGATATGATTTTTAAAGTAACTGTGATGCAGTTAGCCAG
66 AATCAGTTTTAGAGTTTTGGAACTCGAGATATGATTTTTAAAGTAACTGTGATGCAGTTAGCCAG
72965591 CTTGTCTGGAAATTTTAAAATGAACTGTGTAAGTAAATGAATTAAGTCCGTTAACACCTTGTGTT
131 CTTGTCTGGAAATTTTAAAATGAACTGTGTAAGTAAATGAATTAAGTCCGTTAACACCTTGTGTT
72965656 CGACTCCGGCAACGGTCTCGGATACGGGGCATTACAATTTGATTGGTATCAGATG
196 CGACTCCGGCAACGGTCTCGGATACGGGGCATTACAATTTGATTGGTATCAGATG
* *
72965711 ACCAAAAATTCTAGAAAACAATTTGTAGATGGAAATATGAGTCTAGTTTCAGGAAAAATTTACGG
1 ACCAAAAATTCTAGAAAAAAATTTGCAGATGGAAATATGAGTCTAGTTTCAGGAAAAATTTACGG
*
72965776 AAT-AGGTTTTTGAGTTTTGGAACTCGAGATATGATTTTTAAAGTAACTGTGATGCAGTTAGCCA
66 AATCA-GTTTTAGAGTTTTGGAACTCGAGATATGATTTTTAAAGTAACTGTGATGCAGTTAGCCA
72965840 GCTTGTCTGGAAATTTTAAAATGAACTGTGTAAGTAAATGAATTAAGTCCGTTAACACCTTGTGT
130 GCTTGTCTGGAAATTTTAAAATGAACTGTGTAAGTAAATGAATTAAGTCCGTTAACACCTTGTGT
72965905 TCGACTCCGGCAACGGTCTCGGATA
195 TCGACTCCGGCAACGGTCTCGGATA
72965930 AGTGTTCGAC
Statistics
Matches: 213, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
249 1 0.00
250 212 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (250 bp):
ACCAAAAATTCTAGAAAAAAATTTGCAGATGGAAATATGAGTCTAGTTTCAGGAAAAATTTACGG
AATCAGTTTTAGAGTTTTGGAACTCGAGATATGATTTTTAAAGTAACTGTGATGCAGTTAGCCAG
CTTGTCTGGAAATTTTAAAATGAACTGTGTAAGTAAATGAATTAAGTCCGTTAACACCTTGTGTT
CGACTCCGGCAACGGTCTCGGATACGGGGCATTACAATTTGATTGGTATCAGATG
Found at i:72967992 original size:56 final size:56
Alignment explanation
Indices: 72967925--72968044 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
72967915 TATTAGTTTA
72967925 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
72967981 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
72968037 TTGCCCAT
1 TTGCCCAT
72968045 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:72970360 original size:47 final size:47
Alignment explanation
Indices: 72970240--72970361 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
72970230 GCATTGGCAT
**
72970240 TAAGACAAGGATACCATGTAAGACCACATTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
72970287 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
72970334 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
72970362 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:72970404 original size:54 final size:56
Alignment explanation
Indices: 72970340--72970486 Score: 210
Period size: 54 Copynumber: 2.7 Consensus size: 56
72970330 TTGGTAAGAT
* *
72970340 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAATG-A
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGTA
* * *
72970394 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGTA
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGTA
**
72970450 AAGG-TCCCATGTAAGACCATGCCAAGACATGGCATTG
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTG
72970487 GTGAGTTCAT
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
54 41 0.50
55 36 0.44
56 5 0.06
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (56 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGTA
Found at i:72970469 original size:55 final size:54
Alignment explanation
Indices: 72970348--72970534 Score: 207
Period size: 55 Copynumber: 3.5 Consensus size: 54
72970338 ATAAGGATAT
* * * *
72970348 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAATGAAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAGGAAAC
* **
72970402 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGTAAAGG-TCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-AAAGGAAAC
* * *
72970457 CATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTC-ATAAGGCAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAGGAAAC
** * * *
72970510 CACATACGACTATGTCAAGACATGG
1 CATGTAAGACCATGCCAAGACATGG
72970535 AAAAGGTAAG
Statistics
Matches: 114, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.04
53 28 0.25
54 35 0.31
55 42 0.37
56 5 0.04
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAGGAAAC
Found at i:72972468 original size:49 final size:49
Alignment explanation
Indices: 72972293--72972479 Score: 187
Period size: 50 Copynumber: 3.8 Consensus size: 49
72972283 TGTGACGTCG
* * * * *
72972293 CATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGAAAACTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG-ATA-TGTGGTCA
* ** ** * *
72972344 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTATTAGATGGTGAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT-ATGTGGTCA
* * *
72972394 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTAT-TGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA-TATGTGGTCA
*
72972443 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCA
72972480 AATAGCTTCG
Statistics
Matches: 113, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
49 38 0.34
50 44 0.39
51 31 0.27
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATATGTGGTCA
Found at i:72979815 original size:44 final size:44
Alignment explanation
Indices: 72979750--72979834 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
72979740 TTGATATCTC
* *
72979750 AAAGTCCATGGTTGTACCATGGAAATTAAGGAAGAATTGACAGA
1 AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGACAGA
* * *
72979794 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGAC
1 AAAGTCCATGGTT-ATAACATGGAAATTAAGGAAGAATTGAC
72979835 GGTTAAGGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGACAGA
Found at i:72980032 original size:47 final size:47
Alignment explanation
Indices: 72979973--72980141 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
72979963 GCATTGGCAC
*
72979973 TAAGACAAGGATACCATGTAAGACCAAGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
72980020 TAAGACAAGGATACCATGTAAGACCATGTTTGGAATAGGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
72980067 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
72980114 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
72980142 CCAAGGCATG
Statistics
Matches: 114, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 114 1.00
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:72980325 original size:108 final size:109
Alignment explanation
Indices: 72980128--72980326 Score: 258
Period size: 108 Copynumber: 1.8 Consensus size: 109
72980118 ATAAGGATAT
* * * * *
72980128 CATGTAAGACCATGCCAAGGCATGATATTGATAAGTTCTATAAGGCAAGAAAATCATGTAAGACC
1 CATGTAAAACCATGCCAAGACATGACATTGATAAGTTCTATAAGGCAAGAAAACCACGTAAGACC
** *
72980193 ATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
66 ATGCCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCC
* * * *
72980237 CATGTAAAACCATGCCAAGACATGGCATTGGTGAGTTC-ATAAGGCAATG-ATACCACGTAAGAC
1 CATGTAAAACCATGCCAAGACATGACATTGATAAGTTCTATAAGGCAA-GAAAACCACGTAAGAC
*
72980300 CATGCCAAGACATGGCAATGGTAAGTT
65 CATGCCAAGACATGGCAATGATAAGTT
72980327 CAAAAAGGAA
Statistics
Matches: 76, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
108 43 0.57
109 33 0.43
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (109 bp):
CATGTAAAACCATGCCAAGACATGACATTGATAAGTTCTATAAGGCAAGAAAACCACGTAAGACC
ATGCCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCC
Found at i:72980328 original size:53 final size:53
Alignment explanation
Indices: 72980123--72980327 Score: 223
Period size: 53 Copynumber: 3.8 Consensus size: 53
72980113 GTAAGATAAG
* * **
72980123 GATATCATGTAAGACCATGCCAAGGCATGATATTGATAAGTTCTATAAGGCAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAA
* * **
72980176 GAAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAA
1 G-ATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC-AA
* * * * *
72980232 GGTCCCATGTAAAACCATGCCAAGACATGGCATTGGTGAGTTC-ATAAGGCAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAA
* * *
72980284 TGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTC
1 -GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
72980328 AAAAAGGAAA
Statistics
Matches: 127, Mismatches: 21, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 36 0.28
55 41 0.32
56 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAA
Found at i:72983114 original size:40 final size:40
Alignment explanation
Indices: 72983065--72983228 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
72983055 CGGGATTTAA
* *
72983065 CCGGATATAGCT-ACTCGCTCGAATACCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATACCTTCGGGACATAGC
* *
72983105 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATACCTTCGGGACATAGC
* * * * *
72983145 CCGGATATGGTAACTCGAACAACTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATACCTTCGGGACATAGC
* * * * *
72983185 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATACCTTCGGGACATAGC
72983225 CCGG
1 CCGG
72983229 TTATCATCCA
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 2 0.02
40 107 0.98
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.21
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATACCTTCGGGACATAGC
Found at i:72992719 original size:27 final size:27
Alignment explanation
Indices: 72992688--72992892 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
72992678 TAAATTGTAC
72992688 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72992715 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72992741 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72992769 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
72992797 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72992824 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72992851 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72992878 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72992893 GACTCGATAT
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
27 135 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72992883 original size:109 final size:109
Alignment explanation
Indices: 72992688--72992892 Score: 286
Period size: 109 Copynumber: 1.9 Consensus size: 109
72992678 TAAATTGTAC
*
72992688 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
* *
72992753 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
66 TGCGAATTGACCATACAGCACTAAGTGTGCGAGTTTGACTATGT
* ** *
72992797 AGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACTAAGT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGT
* ** * *
72992861 GTGCGAGTTGATTATATAGCACTGAGTGTGCG
65 GTGCGAATTGACCATACAGCACTAAGTGTGCG
72992893 GACTCGATAT
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
108 1 0.01
109 82 0.99
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (109 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
TGCGAATTGACCATACAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:72998989 original size:8 final size:8
Alignment explanation
Indices: 72998976--72999003 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
72998966 CCCTAGGGTT
72998976 TTTTAGGG
1 TTTTAGGG
72998984 TTTTAGGG
1 TTTTAGGG
72998992 TTTTAGGG
1 TTTTAGGG
72999000 TTTT
1 TTTT
72999004 TGTAACACCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.32, T:0.57
Consensus pattern (8 bp):
TTTTAGGG
Found at i:73000625 original size:39 final size:39
Alignment explanation
Indices: 73000598--73000756 Score: 255
Period size: 39 Copynumber: 4.1 Consensus size: 39
73000588 TGTCCAGCAC
*
73000598 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
*
73000637 ATAGCCTGCGAACATAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
* *
73000676 ATAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCTT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
* * *
73000715 ATAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
73000754 ATA
1 ATA
73000757 TATATTCACA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (39 bp):
ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
Found at i:73002691 original size:34 final size:33
Alignment explanation
Indices: 73002647--73002720 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 33
73002637 TTTATTTTTT
* *
73002647 TAAATAAATTAAACT-AGGTTTTATGGTGTTTAAA
1 TAAATTAATTAAACTAAGG-TTTAGGGT-TTTAAA
* *
73002681 TAAATTAATTAAATTAAGGTTTGGGGTTTTAAA
1 TAAATTAATTAAACTAAGGTTTAGGGTTTTAAA
73002714 TAAATTA
1 TAAATTA
73002721 TTTAGGGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 13 0.37
34 19 0.54
35 3 0.09
ACGTcount: A:0.42, C:0.01, G:0.15, T:0.42
Consensus pattern (33 bp):
TAAATTAATTAAACTAAGGTTTAGGGTTTTAAA
Found at i:73006841 original size:18 final size:18
Alignment explanation
Indices: 73006815--73006858 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
73006805 GACTGGGAAA
* *
73006815 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGAT
73006833 AGGATACATATAAGGGAT
1 AGGATACATATAAGGGAT
*
73006851 AAGATACA
1 AGGATACA
73006859 CACTTGGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.48, C:0.07, G:0.25, T:0.20
Consensus pattern (18 bp):
AGGATACATATAAGGGAT
Found at i:73008671 original size:21 final size:21
Alignment explanation
Indices: 73008638--73008681 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
73008628 TATAAAGAGC
*
73008638 TTTGAGAAATTTAATGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
** *
73008659 TTTGAGAGCTTTAGGGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
73008680 TT
1 TT
73008682 GTAGAGATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.25, T:0.34
Consensus pattern (21 bp):
TTTGAGAAATTTAAGGAGAAA
Found at i:73012458 original size:39 final size:39
Alignment explanation
Indices: 73012401--73012568 Score: 300
Period size: 39 Copynumber: 4.3 Consensus size: 39
73012391 AAGCAAGACA
*
73012401 CTGGAAATGTATTCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
73012440 CTAGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
73012479 CTGGAAATGTATCAGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
73012518 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
73012557 CTGGAAATGTAT
1 CTGGAAATGTAT
73012569 TCGTGCTGGT
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 123 1.00
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:73014372 original size:17 final size:18
Alignment explanation
Indices: 73014339--73014373 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
73014329 TGTTTTCTTT
*
73014339 GAGGTCCATGATAATTGG
1 GAGGTCCAAGATAATTGG
73014357 GAGGTCCAAG-TAATTGG
1 GAGGTCCAAGATAATTGG
73014374 AAATTCCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.11, G:0.34, T:0.26
Consensus pattern (18 bp):
GAGGTCCAAGATAATTGG
Found at i:73015073 original size:38 final size:38
Alignment explanation
Indices: 73015030--73015105 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
73015020 CTGTGTTGAG
73015030 TTTGATTATTTGCTTGCTTTATCTTCACCAATGGGAAT
1 TTTGATTATTTGCTTGCTTTATCTTCACCAATGGGAAT
73015068 TTTGATTATTTGCTTGCTTTATCTTCACCAATGGGAAT
1 TTTGATTATTTGCTTGCTTTATCTTCACCAATGGGAAT
73015106 CACTGCTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.47
Consensus pattern (38 bp):
TTTGATTATTTGCTTGCTTTATCTTCACCAATGGGAAT
Found at i:73016680 original size:20 final size:19
Alignment explanation
Indices: 73016640--73016681 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
73016630 CAAACACCAT
*
73016640 AAAAGTAAATCATTTCTAG
1 AAAAGTAAATCATTTCCAG
73016659 AAAAGTAAATCATTTTCCAG
1 AAAAGTAAATCA-TTTCCAG
73016679 AAA
1 AAA
73016682 TAATTTTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.29
Consensus pattern (19 bp):
AAAAGTAAATCATTTCCAG
Found at i:73017670 original size:22 final size:22
Alignment explanation
Indices: 73017628--73017670 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
73017618 AAAGTGTGCA
* *
73017628 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
73017650 TATATGAATGTTATAC-CTTAG
1 TATATGAA-GTTATACACTTAG
73017671 GCGAAACTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:73021157 original size:63 final size:63
Alignment explanation
Indices: 73021058--73021182 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
73021048 CTATCACCCG
*
73021058 GGAAAGGCTAATGTGGTTGCGGATGCCTTAAGTCGAAAATCAATGTTTGCTTTACGAGCGATA
1 GGAAAGGCTAATATGGTTGCGGATGCCTTAAGTCGAAAATCAATGTTTGCTTTACGAGCGATA
73021121 GGAAAGGCTAATATGGTTGCGGATGCCTTAAGTCGAAAATCAATGTTTGCTTTACGAGCGAT
1 GGAAAGGCTAATATGGTTGCGGATGCCTTAAGTCGAAAATCAATGTTTGCTTTACGAGCGAT
73021183 GAATGTACAC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (63 bp):
GGAAAGGCTAATATGGTTGCGGATGCCTTAAGTCGAAAATCAATGTTTGCTTTACGAGCGATA
Found at i:73022052 original size:319 final size:319
Alignment explanation
Indices: 73021473--73022110 Score: 1186
Period size: 319 Copynumber: 2.0 Consensus size: 319
73021463 AATGTACAAT
*
73021473 GACCTGAGACGTCAGTTTCGGTGGCATGGCATGAAACGAGACATTTCCGATTTTGTTTTGAAGTG
1 GACCTGAGACGTCAGTTTCGGTGGCATGGCATGAAACGAGACATTTCCGATTTTGTTTCGAAGTG
*
73021538 TTTAATATGTCAACAAGTGAAAGCGGAACACCAAGTGCCTACGGGTGTACTTCAGCCAATCATGA
66 TTTAATATGTCAACAAGTGAAAGCGGAACACCAAGTGCCTACGGGTGTACTACAGCCAATCATGA
73021603 TACCTGAATGGAAATGGGATCGAGTCACGATGGAGTTTGTATCTGGGTTGCCATTGTCGGCAAGT
131 TACCTGAATGGAAATGGGATCGAGTCACGATGGAGTTTGTATCTGGGTTGCCATTGTCGGCAAGT
73021668 AAGAAAGATGCGATTTGGGTTGTTGTTGATAGACTGACTAAGTCGGCTCACTTTATCCCCGTACG
196 AAGAAAGATGCGATTTGGGTTGTTGTTGATAGACTGACTAAGTCGGCTCACTTTATCCCCGTACG
73021733 TACGGATTTTTCATTGGATAAACTAGCGGAATTGTATGTTTCTCAGATTGTAAGATTAC
261 TACGGATTTTTCATTGGATAAACTAGCGGAATTGTATGTTTCTCAGATTGTAAGATTAC
*
73021792 GACCTGAGACGTCAGTTTTGGTGGCATGGCATGAAACGAGACATTTCCGATTTTGTTTCGAAGTG
1 GACCTGAGACGTCAGTTTCGGTGGCATGGCATGAAACGAGACATTTCCGATTTTGTTTCGAAGTG
* * *
73021857 TTTAATATGTCAACAAGTGAAAGTGGAACACCAAGTGCCTACGGGTTTACTACAGCCGATCATGA
66 TTTAATATGTCAACAAGTGAAAGCGGAACACCAAGTGCCTACGGGTGTACTACAGCCAATCATGA
*
73021922 TACCTGAATGGAAATGGGATCGAGTCACGATGGATTTTGTATCTGGGTTGCCATTGTCGGCAAGT
131 TACCTGAATGGAAATGGGATCGAGTCACGATGGAGTTTGTATCTGGGTTGCCATTGTCGGCAAGT
* *
73021987 AAGAAAGCTGCGATTTGGGTTGTTGTTGATAGACTGAGTAAGTCGGCTCACTTTATCCCCGTACG
196 AAGAAAGATGCGATTTGGGTTGTTGTTGATAGACTGACTAAGTCGGCTCACTTTATCCCCGTACG
*
73022052 TACGGATTTTTCATTGGATAAACTAGCGGAATTGTATGTTTCTTAGATTGTAAGATTAC
261 TACGGATTTTTCATTGGATAAACTAGCGGAATTGTATGTTTCTCAGATTGTAAGATTAC
73022111 ACGGGGTACC
Statistics
Matches: 309, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
319 309 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (319 bp):
GACCTGAGACGTCAGTTTCGGTGGCATGGCATGAAACGAGACATTTCCGATTTTGTTTCGAAGTG
TTTAATATGTCAACAAGTGAAAGCGGAACACCAAGTGCCTACGGGTGTACTACAGCCAATCATGA
TACCTGAATGGAAATGGGATCGAGTCACGATGGAGTTTGTATCTGGGTTGCCATTGTCGGCAAGT
AAGAAAGATGCGATTTGGGTTGTTGTTGATAGACTGACTAAGTCGGCTCACTTTATCCCCGTACG
TACGGATTTTTCATTGGATAAACTAGCGGAATTGTATGTTTCTCAGATTGTAAGATTAC
Done.