Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 220 of 284
Found at i:73036008 original size:40 final size:40
Alignment explanation
Indices: 73035635--73036007 Score: 710
Period size: 40 Copynumber: 9.3 Consensus size: 40
73035625 CGACAGCATT
73035635 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
1 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
73035675 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
1 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
73035715 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
1 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
73035755 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
1 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
73035795 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
1 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
73035835 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
1 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
73035875 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
1 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
73035915 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
1 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
* * *
73035955 CGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTA
1 CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
*
73035995 CGAGTTGTTATAT
1 CGAGTTGCTATAT
73036008 CATGCTAAAT
Statistics
Matches: 329, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 329 1.00
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.28
Consensus pattern (40 bp):
CGAGTTGCTATATTCGGGCTAAGGCCCGAAGGCATTTGTG
Found at i:73036293 original size:22 final size:22
Alignment explanation
Indices: 73036251--73036294 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
73036241 AAAGTGTGCA
* *
73036251 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
73036273 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
73036295 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:73038424 original size:47 final size:47
Alignment explanation
Indices: 73038215--73038448 Score: 326
Period size: 47 Copynumber: 5.0 Consensus size: 47
73038205 GATTCTATGA
* *
73038215 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGT
*
73038262 GATGAATGTGAACATGCATATGTGTGATAAAGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGT
* * *
73038309 GATGAGTGTGAACATGAAAATATGTGATAAAGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGT
* *
73038356 GATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGT
* * *** *
73038403 GATGAATGTGGAA-GTGTATATATGTGGCGAAGCCGAATGGCTAATG
1 GATGAATGT-GAACATGCATATATGTGATAAAGCCGAATGGCCAATG
73038449 CGAAATGTGT
Statistics
Matches: 166, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
47 163 0.98
48 3 0.02
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGT
Found at i:73043827 original size:33 final size:33
Alignment explanation
Indices: 73043790--73043861 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
73043780 CCCACAATGC
*
73043790 TACTGTATAGGGCTAAGGCCCAGACTGTACTGT
1 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
* **
73043823 TACTGAATAGGGCTTTGGCCCAGACTGTACTGA
1 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
73043856 TACTGT
1 TACTGT
73043862 GTTGTTTACT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (33 bp):
TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
Found at i:73050607 original size:37 final size:37
Alignment explanation
Indices: 73050507--73050607 Score: 148
Period size: 37 Copynumber: 2.7 Consensus size: 37
73050497 AGCTCAGACG
* * * *
73050507 AAATCTCCACACGAAGTTATCGGGTCATACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCAGGACA
*
73050544 AAATCTCCGCACGTAGTCATCGGGTCTTACCAGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCAGGACA
*
73050581 TAATCTCCACACGTAGTCATCGGGTCT
1 AAATCTCCACACGTAGTCATCGGGTCT
73050608 CACCTGGAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCAGGACA
Found at i:73050899 original size:47 final size:47
Alignment explanation
Indices: 73050820--73051107 Score: 441
Period size: 47 Copynumber: 6.1 Consensus size: 47
73050810 TATATATATT
* * * *
73050820 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
73050867 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
73050914 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
73050961 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
73051008 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
73051055 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
73051102 TCACAT
1 TCACAT
73051108 AAAATCCTAA
Statistics
Matches: 218, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 218 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:73050992 original size:141 final size:141
Alignment explanation
Indices: 73050820--73051108 Score: 515
Period size: 141 Copynumber: 2.0 Consensus size: 141
73050810 TATATATATT
* *
73050820 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
* *
73050885 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCAT
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
73050950 GTTCACATTCA
131 ATTCACATTCA
* *
73050961 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
73051026 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
73051091 ATTCACATTCA
131 ATTCACATTCA
73051102 TCACATA
1 TCACATA
73051109 AAATCCTAAA
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (141 bp):
TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
ATTCACATTCA
Found at i:73055788 original size:55 final size:55
Alignment explanation
Indices: 73055667--73055807 Score: 149
Period size: 55 Copynumber: 2.6 Consensus size: 55
73055657 TGCGACATGG
* **
73055667 CCGTGGGTGAACCTGCCAAAATAACACGGGCGTGCGACACACCCGTGCCTTGAAA
1 CCGTGGGCGAACCTGCCAAAATAACACGGGCGTGCGACACACCCGTGCCTAAAAA
* * * * ***
73055722 CCATGGCCGAACCTGTCAAATTAACACGGGCGTGCGACATGTCCGTGCC-AAACAA
1 CCGTGGGCGAACCTGCCAAAATAACACGGGCGTGCGACACACCCGTGCCTAAA-AA
* * *
73055777 TCGTGGGCGAACTTGCCAAAACAACACGGGC
1 CCGTGGGCGAACCTGCCAAAATAACACGGGC
73055808 ATGGAGCTTC
Statistics
Matches: 68, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
54 1 0.01
55 67 0.99
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.15
Consensus pattern (55 bp):
CCGTGGGCGAACCTGCCAAAATAACACGGGCGTGCGACACACCCGTGCCTAAAAA
Found at i:73068439 original size:10 final size:10
Alignment explanation
Indices: 73068433--73068482 Score: 64
Period size: 10 Copynumber: 4.8 Consensus size: 10
73068423 TGCAAATTTG
73068433 TCAAAATTAA
1 TCAAAATTAA
73068443 TCAAAATTAA
1 TCAAAATTAA
73068453 TCAAAATTAA
1 TCAAAATTAA
*
73068463 TTATAAAATTAA
1 -T-CAAAATTAA
*
73068475 TTAAAATT
1 TCAAAATT
73068483 CATTATGTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
10 27 0.73
11 2 0.05
12 8 0.22
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (10 bp):
TCAAAATTAA
Found at i:73068473 original size:22 final size:22
Alignment explanation
Indices: 73068433--73068488 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
73068423 TGCAAATTTG
*
73068433 TCAAAATTAA-T-CAAAATTAA
1 TCAAAATTAATTATAAAATTAA
73068453 TCAAAATTAATTATAAAATTAA
1 TCAAAATTAATTATAAAATTAA
* *
73068475 TTAAAATTCATTAT
1 TCAAAATTAATTAT
73068489 GTTAATAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 10 0.32
21 1 0.03
22 20 0.65
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (22 bp):
TCAAAATTAATTATAAAATTAA
Found at i:73072915 original size:6 final size:6
Alignment explanation
Indices: 73072904--73072945 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
73072894 AAGACCTTGA
* *
73072904 AAAAGC AAAAGC GAAAGC GAAAGC GAAAA-C AAAAGC AAAAGC
1 AAAAGC AAAAGC AAAAGC AAAAGC -AAAAGC AAAAGC AAAAGC
73072946 CTAGCTAGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 4 0.12
6 25 0.78
7 3 0.09
ACGTcount: A:0.62, C:0.17, G:0.21, T:0.00
Consensus pattern (6 bp):
AAAAGC
Found at i:73077828 original size:186 final size:186
Alignment explanation
Indices: 73077508--73077874 Score: 680
Period size: 186 Copynumber: 2.0 Consensus size: 186
73077498 CTTTTAATGA
*
73077508 TCAGTTGTTGGGCAATCACAGACCACATGTAGTATGGTCTCTGTAACAGTCCAGTTTTGACCCTA
1 TCAGTTGTTGGGCAATCACAGACCACATGTAGTATGGTCTCTGTAACAATCCAGTTTTGACCCTA
*
73077573 GTCGGAATAGTAGTTTTAGGACCAAAAATCCGAGTCTGAAATATATTTTAATATTTTTTTCTATG
66 GTCGGAATAGTAGTTTTAGGACCAAAAATCCGAGTCTGAAATATATTTTAATATTATTTTCTATG
*
73077638 TTTGTGATATGTGAATTTATATTTGCGAAATTTCTGTGATTTAATTTGTCTATTTT
131 TTTGTGATATGTGAATTTATATCTGCGAAATTTCTGTGATTTAATTTGTCTATTTT
*
73077694 TCAGTTGTTGGGCAATCACAGACCACATGTAGTATGGTCTCTGTAACAATCTAGTTTTGACCCTA
1 TCAGTTGTTGGGCAATCACAGACCACATGTAGTATGGTCTCTGTAACAATCCAGTTTTGACCCTA
* *
73077759 GTCGGAATAGTAGTTTTAGGACCAAAAATCCGAGTTTGAAATATATTTTAATATTATTTTCTGTG
66 GTCGGAATAGTAGTTTTAGGACCAAAAATCCGAGTCTGAAATATATTTTAATATTATTTTCTATG
73077824 TTTGTGATATGTGAATTTATATCTGCGAAATTTCTGTGATTTAATTTGTCT
131 TTTGTGATATGTGAATTTATATCTGCGAAATTTCTGTGATTTAATTTGTCT
73077875 GTTTCTGTGC
Statistics
Matches: 175, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
186 175 1.00
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (186 bp):
TCAGTTGTTGGGCAATCACAGACCACATGTAGTATGGTCTCTGTAACAATCCAGTTTTGACCCTA
GTCGGAATAGTAGTTTTAGGACCAAAAATCCGAGTCTGAAATATATTTTAATATTATTTTCTATG
TTTGTGATATGTGAATTTATATCTGCGAAATTTCTGTGATTTAATTTGTCTATTTT
Found at i:73078299 original size:133 final size:133
Alignment explanation
Indices: 73078149--73078413 Score: 512
Period size: 133 Copynumber: 2.0 Consensus size: 133
73078139 CCGAAAATTA
73078149 AAGAAAAAGAAGAAAGAATAGAGCTTTAAGTTCGGCACTTGTTTTGGTGGATTAAGGTATGTACT
1 AAGAAAAAGAAGAAAGAATAGAGCTTTAAGTTCGGCACTTGTTTTGGTGGATTAAGGTATGTACT
73078214 TTGGTCTATTTTTGATAATTTCTACGTTTCTGTGATCGTTACTTCGTGTTCTTCAAAACCGATGT
66 TTGGTCTATTTTTGATAATTTCTACGTTTCTGTGATCGTTACTTCGTGTTCTTCAAAACCGATGT
73078279 CTG
131 CTG
*
73078282 AAGAAAAAGAAGAAAGAATAGAGCTTTAAGTTCGGCACTTGTTTTGGTTGATTAAGGTATGTACT
1 AAGAAAAAGAAGAAAGAATAGAGCTTTAAGTTCGGCACTTGTTTTGGTGGATTAAGGTATGTACT
*
73078347 TTGGTCTATTTTTGATAATTTCTACGTTTCTGTGATCGTTACTTCGTGTTTTTCAAAACCGATGT
66 TTGGTCTATTTTTGATAATTTCTACGTTTCTGTGATCGTTACTTCGTGTTCTTCAAAACCGATGT
73078412 CT
131 CT
73078414 AAATGATTTT
Statistics
Matches: 130, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 130 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.39
Consensus pattern (133 bp):
AAGAAAAAGAAGAAAGAATAGAGCTTTAAGTTCGGCACTTGTTTTGGTGGATTAAGGTATGTACT
TTGGTCTATTTTTGATAATTTCTACGTTTCTGTGATCGTTACTTCGTGTTCTTCAAAACCGATGT
CTG
Found at i:73078463 original size:20 final size:21
Alignment explanation
Indices: 73078415--73078463 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
73078405 CCGATGTCTA
* *
73078415 AATGATTTTTATAATTTTTAT
1 AATGATTTTTATAATTTATAG
*
73078436 AAT-TTTTTTATAA-TTATAG
1 AATGATTTTTATAATTTATAG
73078455 AATGATTTT
1 AATGATTTT
73078464 GGACAAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 7 0.30
20 13 0.57
21 3 0.13
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (21 bp):
AATGATTTTTATAATTTATAG
Found at i:73079655 original size:122 final size:122
Alignment explanation
Indices: 73079438--73079680 Score: 468
Period size: 122 Copynumber: 2.0 Consensus size: 122
73079428 GGAGTTGATT
*
73079438 TGGCTAATTCAAGATGGATTGATGATGATCTGTTCTAGCCAATCACCTGACACTTGTTCATGGGT
1 TGGCTAATTCAAGATGGATTGATGATGATCTGTTCTAGCCAATCACCTAACACTTGTTCATGGGT
*
73079503 TTAACAGAATCATAGTTGTAATGGTTTTTTTTTAATCTAAACACTTTTTTTCATTTG
66 TGAACAGAATCATAGTTGTAATGGTTTTTTTTTAATCTAAACACTTTTTTTCATTTG
73079560 TGGCTAATTCAAGATGGATTGATGATGATCTGTTCTAGCCAATCACCTAACACTTGTTCATGGGT
1 TGGCTAATTCAAGATGGATTGATGATGATCTGTTCTAGCCAATCACCTAACACTTGTTCATGGGT
73079625 TGAACAGAATCATAGTTGTAATGGTTTTTTTTTAATCTAAACACTTTTTTTCATTT
66 TGAACAGAATCATAGTTGTAATGGTTTTTTTTTAATCTAAACACTTTTTTTCATTT
73079681 AATAAGTTGT
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.42
Consensus pattern (122 bp):
TGGCTAATTCAAGATGGATTGATGATGATCTGTTCTAGCCAATCACCTAACACTTGTTCATGGGT
TGAACAGAATCATAGTTGTAATGGTTTTTTTTTAATCTAAACACTTTTTTTCATTTG
Found at i:73080351 original size:42 final size:44
Alignment explanation
Indices: 73080247--73080395 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 44
73080237 CTGAGACATC
* *
73080247 GTGTAAGACCGTGTCTGGGACACAGGCCTCG-ATTGAGATTTAT
1 GTGTAAGACCATGTCTGGGACACAGGCATCGTATTGAGATTTAT
* ** *
73080290 GTATAAGACCATGTCTGGGACATTGGCATCGTATT-TGATTT-T
1 GTGTAAGACCATGTCTGGGACACAGGCATCGTATTGAGATTTAT
* * *
73080332 GTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTAA
1 GTGTAAGACCATGTCTGGGACACAGGCATCG-TATTGAGATTTAT
* *
73080375 ATGTAAGACCATGTCCGGGAC
1 GTGTAAGACCATGTCTGGGAC
73080396 GTCGGCATTG
Statistics
Matches: 87, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 30 0.34
43 54 0.62
44 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (44 bp):
GTGTAAGACCATGTCTGGGACACAGGCATCGTATTGAGATTTAT
Found at i:73080403 original size:43 final size:42
Alignment explanation
Indices: 73080293--73080403 Score: 109
Period size: 42 Copynumber: 2.6 Consensus size: 42
73080283 GATTTATGTA
* * ***
73080293 TAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTTGTG
1 TAAGACCATGTCTGGGACGTAGGCATCGTATTTGATTAAATG
*
73080335 TAAGACCCTGTCTGGGACAG-AGGCATCG-ATATTGAATTAAATG
1 TAAGACCATGTCTGGGAC-GTAGGCATCGTAT-TTG-ATTAAATG
* *
73080378 TAAGACCATGTCCGGGACGTCGGCAT
1 TAAGACCATGTCTGGGACGTAGGCAT
73080404 TGTACTTGTG
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.04
42 28 0.50
43 26 0.46
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACGTAGGCATCGTATTTGATTAAATG
Found at i:73080403 original size:85 final size:84
Alignment explanation
Indices: 73080247--73080403 Score: 201
Period size: 85 Copynumber: 1.8 Consensus size: 84
73080237 CTGAGACATC
* * * *
73080247 GTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTGGGACA
1 GTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTAATG-ATAAGACCATGTCCGGGACA
*
73080312 TTGGCATCGTATTTGATTTT
65 TCGGCATCGTATTTGATTTT
*
73080332 GTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-ATTAAATG-TAAGACCATGTCCGGGA
1 GTGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATT-AATGATAAGACCATGTCCGGGA
*
73080395 CGTCGGCAT
63 CATCGGCAT
73080404 TGTACTTGTG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
85 51 0.82
86 3 0.05
87 8 0.13
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (84 bp):
GTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTAATGATAAGACCATGTCCGGGACAT
CGGCATCGTATTTGATTTT
Found at i:73080975 original size:15 final size:16
Alignment explanation
Indices: 73080949--73080981 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
73080939 TTTTGGTGTA
*
73080949 TGTTTGTAATGTGCTT
1 TGTTTGTAATGTGATT
73080965 TGTTT-TAATGTGATT
1 TGTTTGTAATGTGATT
73080980 TG
1 TG
73080982 GCCATTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.15, C:0.03, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTTGTAATGTGATT
Found at i:73091242 original size:13 final size:13
Alignment explanation
Indices: 73091224--73091252 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
73091214 TGTACGCTTG
73091224 ATTCTTAATATGA
1 ATTCTTAATATGA
73091237 ATTCTTAATATGA
1 ATTCTTAATATGA
73091250 ATT
1 ATT
73091253 AAATGATTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
ATTCTTAATATGA
Found at i:73092455 original size:25 final size:26
Alignment explanation
Indices: 73092407--73092461 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
73092397 CAAGGCATAT
*
73092407 AATTCATGATAACAAATAAACATTTA
1 AATTCATGATAACAAATAAACATTAA
*
73092433 AATTCAT-ATAAC-ATTAAAGCATTAA
1 AATTCATGATAACAAATAAA-CATTAA
73092458 AATT
1 AATT
73092462 TGTAATACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 5 0.19
25 14 0.54
26 7 0.27
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.33
Consensus pattern (26 bp):
AATTCATGATAACAAATAAACATTAA
Found at i:73104173 original size:122 final size:120
Alignment explanation
Indices: 73103958--73104181 Score: 313
Period size: 122 Copynumber: 1.9 Consensus size: 120
73103948 CACAATAACA
* *
73103958 ATGAGAATGAGAATAGAAATGTAATGGGTATGAGGTTTTCCTAATCTCAATTTAACACAAAATGT
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATCTCAATTTAACACAAAATGT
* *
73104023 ATGATAAATAACCTAGGAATGCAAATTAAATAATAGACATTGGCATGGTAATAGC
66 AAGATAAATAACCTAAGAATGCAAATTAAATAATAGACATTGGCATGGTAATAGC
* * * ** **
73104078 ATGAGAATAAGCATAGTAATGTCATGGGTATGAGGTGTTCCTAATAACTTGATTTAACAGGAAAT
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAAT--CTCAATTTAACACAAAAT
* *
73104143 GTAAGATAACTAACCTAAGAATGCAAATTAAATGATAGA
64 GTAAGATAAATAACCTAAGAATGCAAATTAAATAATAGA
73104182 AAAATGAAAA
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
120 40 0.45
122 49 0.55
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (120 bp):
ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATCTCAATTTAACACAAAATGT
AAGATAAATAACCTAAGAATGCAAATTAAATAATAGACATTGGCATGGTAATAGC
Found at i:73104294 original size:55 final size:56
Alignment explanation
Indices: 73104230--73104339 Score: 195
Period size: 56 Copynumber: 2.0 Consensus size: 56
73104220 GATAATAAGC
73104230 ATTAGAAATAAGTAAAATAGAAGTG-AAAGGAGTAAACAAACGCTAAGGGAAAGAA
1 ATTAGAAATAAGTAAAATAGAAGTGAAAAGGAGTAAACAAACGCTAAGGGAAAGAA
* *
73104285 ATTAGAAATAAGTAAAATAGATGTGAAAAGGAGTAAACAAACGCTAAGGGTAAGA
1 ATTAGAAATAAGTAAAATAGAAGTGAAAAGGAGTAAACAAACGCTAAGGGAAAGA
73104340 GATTGAGCGT
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
55 24 0.46
56 28 0.54
ACGTcount: A:0.55, C:0.05, G:0.24, T:0.16
Consensus pattern (56 bp):
ATTAGAAATAAGTAAAATAGAAGTGAAAAGGAGTAAACAAACGCTAAGGGAAAGAA
Found at i:73129837 original size:12 final size:12
Alignment explanation
Indices: 73129820--73129844 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73129810 TAGTATACAC
73129820 ACACACACACAT
1 ACACACACACAT
73129832 ACACACACACAT
1 ACACACACACAT
73129844 A
1 A
73129845 TATACAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (12 bp):
ACACACACACAT
Found at i:73129849 original size:16 final size:16
Alignment explanation
Indices: 73129813--73129850 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
73129803 CCATGTTTAG
73129813 TATACACACACACACA
1 TATACACACACACACA
* *
73129829 CATACACACACACATA
1 TATACACACACACACA
73129845 TATACA
1 TATACA
73129851 ACTATGATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (16 bp):
TATACACACACACACA
Found at i:73132072 original size:27 final size:27
Alignment explanation
Indices: 73132042--73132192 Score: 203
Period size: 27 Copynumber: 5.6 Consensus size: 27
73132032 TAGCTTGTAA
*
73132042 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73132069 AATTATCGAAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73132096 AATTACTGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73132123 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
73132150 AAATACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73132177 AATTACCGAGATACCC
1 AATTACCGAAATACCC
73132193 TCATGGGGTA
Statistics
Matches: 107, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:73132956 original size:26 final size:27
Alignment explanation
Indices: 73132927--73132986 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
73132917 CCACATATAT
*
73132927 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
73132953 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
73132980 ATATCTG
1 ATATCTG
73132987 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:73144043 original size:28 final size:29
Alignment explanation
Indices: 73144011--73144065 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
73144001 ATTTTCAACA
73144011 AAAATGTCAAAATT-AGGGATTAAATTGT
1 AAAATGTCAAAATTGAGGGATTAAATTGT
* *
73144039 AAAATGTGAAAATTGAGGGGTTAAATT
1 AAAATGTCAAAATTGAGGGATTAAATT
73144066 ATGAAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.45, C:0.02, G:0.22, T:0.31
Consensus pattern (29 bp):
AAAATGTCAAAATTGAGGGATTAAATTGT
Found at i:73144072 original size:29 final size:28
Alignment explanation
Indices: 73144011--73144072 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 28
73144001 ATTTTCAACA
*
73144011 AAAATGTCAAAATTAGGGATTAAATTGT
1 AAAATGTCAAAATTAGGGATTAAATTAT
* *
73144039 AAAATGTGAAAATTGAGGGGTTAAATTAT
1 AAAATGTCAAAATT-AGGGATTAAATTAT
*
73144068 GAAAT
1 AAAAT
73144073 AAATGAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.47, C:0.02, G:0.21, T:0.31
Consensus pattern (28 bp):
AAAATGTCAAAATTAGGGATTAAATTAT
Found at i:73157894 original size:43 final size:42
Alignment explanation
Indices: 73157778--73157895 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 42
73157768 GATTTGAGAT
* * *
73157778 TTACATGTAAGACAATGTCTGGGATATTTGCATCGTATTTGA
1 TTACATGTAAGACCATGTCTGGGATGTTGGCATCGTATTTGA
* * * * * * *
73157820 TTTCGTATAAGACCCTGTCTAGGACAG-TGGCATCGGTGTTTGA
1 TTACATGTAAGACCATGTCTGGGA-TGTTGGCATC-GTATTTGA
73157863 TTACATGTAAGACCATGTCTGGGATGTTGGCAT
1 TTACATGTAAGACCATGTCTGGGATGTTGGCAT
73157896 TGTACGAGCT
Statistics
Matches: 57, Mismatches: 16, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
42 25 0.44
43 32 0.56
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGATGTTGGCATCGTATTTGA
Found at i:73163182 original size:55 final size:55
Alignment explanation
Indices: 73163118--73163225 Score: 216
Period size: 55 Copynumber: 2.0 Consensus size: 55
73163108 ACACACACAC
73163118 ATATATATATCGTTCTTTAATACTAATAATTCACTTGAAATCATTTCACATGTAT
1 ATATATATATCGTTCTTTAATACTAATAATTCACTTGAAATCATTTCACATGTAT
73163173 ATATATATATCGTTCTTTAATACTAATAATTCACTTGAAATCATTTCACATGT
1 ATATATATATCGTTCTTTAATACTAATAATTCACTTGAAATCATTTCACATGT
73163226 GAGTACAGAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.36, C:0.15, G:0.06, T:0.44
Consensus pattern (55 bp):
ATATATATATCGTTCTTTAATACTAATAATTCACTTGAAATCATTTCACATGTAT
Found at i:73163462 original size:40 final size:40
Alignment explanation
Indices: 73163378--73163522 Score: 186
Period size: 40 Copynumber: 3.6 Consensus size: 40
73163368 CGCAAGCGTA
* * * *
73163378 CGGGTCTTTAA-CCCGGATACCATTCCAGCACA-AAGCCTG
1 CGGGTCTTTAAGCCCGAATACAATTCTAGCATATAA-CCTG
*
73163417 CGGGTCTTTATGCCCGAATACAATTCTAGCATATAACCTG
1 CGGGTCTTTAAGCCCGAATACAATTCTAGCATATAACCTG
* * *
73163457 CGGGTCTTTAAGCCCAAATACAATTCTAGCATATAGCCAG
1 CGGGTCTTTAAGCCCGAATACAATTCTAGCATATAACCTG
*
73163497 CGGGTCTTTAAGCCCGGATACAATTC
1 CGGGTCTTTAAGCCCGAATACAATTC
73163523 CAAATATCAT
Statistics
Matches: 93, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 10 0.11
40 81 0.87
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (40 bp):
CGGGTCTTTAAGCCCGAATACAATTCTAGCATATAACCTG
Found at i:73164801 original size:21 final size:21
Alignment explanation
Indices: 73164777--73164817 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
73164767 CGGCAATTTC
73164777 AATTCATACCT-TTCAACCATA
1 AATTCA-ACCTATTCAACCATA
*
73164798 AATTCAACTTATTCAACCAT
1 AATTCAACCTATTCAACCAT
73164818 CATTTAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (21 bp):
AATTCAACCTATTCAACCATA
Found at i:73164827 original size:21 final size:21
Alignment explanation
Indices: 73164788--73164827 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
73164778 ATTCATACCT
*
73164788 TTCAACCATAAATTCAACTTA
1 TTCAACCATAAATTAAACTTA
* *
73164809 TTCAACCATCATTTAAACT
1 TTCAACCATAAATTAAACT
73164828 ACTTAACATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (21 bp):
TTCAACCATAAATTAAACTTA
Found at i:73165328 original size:55 final size:55
Alignment explanation
Indices: 73165244--73165354 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
73165234 TTTGACATGT
73165244 AAGTCACTCATGTCAATAATTCATGCATTATTTGGCACTTCAAAATTTACCTATC
1 AAGTCACTCATGTCAATAATTCATGCATTATTTGGCACTTCAAAATTTACCTATC
*
73165299 AAGTCCCTCATGTCAATAATTCATGCATTATTTGGCACTTCAAAATTTACCTATC
1 AAGTCACTCATGTCAATAATTCATGCATTATTTGGCACTTCAAAATTTACCTATC
73165354 A
1 A
73165355 CATTTTCAAG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (55 bp):
AAGTCACTCATGTCAATAATTCATGCATTATTTGGCACTTCAAAATTTACCTATC
Found at i:73171223 original size:40 final size:40
Alignment explanation
Indices: 73171148--73171340 Score: 291
Period size: 40 Copynumber: 4.8 Consensus size: 40
73171138 TTCTAGCGCA
* * * *
73171148 AGCCTACGGGTCTTTAA-CCAGGATACCATTCCAGCACGA-
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-TAT
*
73171187 AGCCTGCGGGTCTTTATGCCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
* *
73171227 AGCCTGCGGGTCCTTAAGCCCGGACACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
73171267 AGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
73171307 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
73171341 AATATCATAC
Statistics
Matches: 140, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 16 0.11
40 124 0.89
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
Found at i:73177205 original size:52 final size:52
Alignment explanation
Indices: 73177127--73177230 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
73177117 CATTAAGAAA
*
73177127 TTCTATTGATAAAGTGTCCAATTTGATAATTAGGACTAAATTACAAAAGCTG
1 TTCTATTGATAAAGTGCCCAATTTGATAATTAGGACTAAATTACAAAAGCTG
73177179 TTCTATTGATAAAGTGCCCAATTTGATAATTAGGACTAAATTACAAAAGCTG
1 TTCTATTGATAAAGTGCCCAATTTGATAATTAGGACTAAATTACAAAAGCTG
73177231 CAAAATGTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.34
Consensus pattern (52 bp):
TTCTATTGATAAAGTGCCCAATTTGATAATTAGGACTAAATTACAAAAGCTG
Found at i:73178450 original size:48 final size:48
Alignment explanation
Indices: 73178256--73178486 Score: 187
Period size: 48 Copynumber: 4.9 Consensus size: 48
73178246 TAGGGTTATG
* *
73178256 TGCGATCCCT-TGTAAGACCATGTCTGGGACATGGCTTTGGTATCGATA
1 TGCGAT-CCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * *
73178304 TGCAAT-TTCATGTAAGACCATAG-CTAGG-C-T---ATCGGCATCGATA
1 TGCGATCCT-ATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATA
* * * * **
73178347 TGTGATCCCATGTAAGACCATGTCCT-AGACATGGCATTGGCATCAACC
1 TGCGATCCTATGTAAGACCATGT-CTGGGACATGGCATTGGCATCGATA
*
73178395 TACGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGCGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
73178443 TGTGATCCTATGAAAGACCACAT-TC-GGGATATGGCATTGGCATC
1 TGCGATCCTATGTAAGA-C-CATGTCTGGGACATGGCATTGGCATC
73178487 CTACCATGTG
Statistics
Matches: 143, Mismatches: 26, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
43 27 0.19
44 3 0.02
45 1 0.01
46 2 0.01
47 3 0.02
48 99 0.69
49 4 0.03
50 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (48 bp):
TGCGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:73184419 original size:26 final size:26
Alignment explanation
Indices: 73184366--73184489 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
73184356 CTCTTTCAAT
*
73184366 AACTGGGGCAAAAGCCC-TTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
73184391 AACTGGGTCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
73184417 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
73184443 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
73184469 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
73184490 GAACTTCCTC
Statistics
Matches: 91, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 15 0.16
26 76 0.84
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:73184570 original size:11 final size:11
Alignment explanation
Indices: 73184539--73184585 Score: 71
Period size: 11 Copynumber: 4.5 Consensus size: 11
73184529 TTATGAATAC
73184539 ATCATGTGCAT
1 ATCATGTGCAT
*
73184550 ATCA--TACAT
1 ATCATGTGCAT
73184559 ATCATGTGCAT
1 ATCATGTGCAT
73184570 ATCATGTGCAT
1 ATCATGTGCAT
73184581 ATCAT
1 ATCAT
73184586 ATCAATCATG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 8 0.25
11 24 0.75
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:73184602 original size:9 final size:10
Alignment explanation
Indices: 73184539--73184602 Score: 62
Period size: 11 Copynumber: 6.4 Consensus size: 10
73184529 TTATGAATAC
73184539 ATCATGTGCAT
1 ATCATGT-CAT
*
73184550 ATCAT-ACAT
1 ATCATGTCAT
73184559 ATCATGTGCAT
1 ATCATGT-CAT
73184570 ATCATGTGCAT
1 ATCATGT-CAT
*
73184581 ATCATATCA-
1 ATCATGTCAT
73184590 ATCATGT-AT
1 ATCATGTCAT
73184599 ATCA
1 ATCA
73184603 AAATCCCATG
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
8 1 0.02
9 18 0.39
10 2 0.04
11 25 0.54
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (10 bp):
ATCATGTCAT
Found at i:73188950 original size:27 final size:26
Alignment explanation
Indices: 73188903--73188953 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
73188893 CGAGGATGCT
*
73188903 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
73188929 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
73188954 TTGCAGCAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:73189577 original size:26 final size:27
Alignment explanation
Indices: 73189548--73189601 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
73189538 TCACACAAGT
73189548 TAGTCATTT-ACACACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
73189574 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
73189601 T
1 T
73189602 GGTAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:73189632 original size:27 final size:27
Alignment explanation
Indices: 73189602--73189877 Score: 294
Period size: 27 Copynumber: 10.4 Consensus size: 27
73189592 GGGGCAAAAT
* * * *
73189602 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
73189629 GGTAACTCTACCCGACAAGAGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73189656 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73189683 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73189710 GGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
73189737 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
73189764 GGT-A-T-T--CCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73189786 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73189813 AGTAATTCTACCCTAC-AGAGGTATTTT
1 GGTAATTCTACCCTACAAG-GGTATTTC
** * *
73189840 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
73189867 GGTAATTCTAC
1 GGTAATTCTAC
73189878 AACTTATCCA
Statistics
Matches: 206, Mismatches: 36, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
22 17 0.08
24 2 0.01
25 2 0.01
26 3 0.01
27 181 0.88
28 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:73189808 original size:76 final size:76
Alignment explanation
Indices: 73189693--73189838 Score: 247
Period size: 76 Copynumber: 1.9 Consensus size: 76
73189683 GGTAATTCTA
* * *
73189693 TCCTACAAGGGTATTTCGGTAATTCTACCCTACATGGGTATTTCAATAATTCTACCCTATAGGGG
1 TCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGAGG
73189758 TATTTCGGTAT
66 TATTTCGGTAT
* *
73189769 TCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGAGG
1 TCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGAGG
73189834 TATTT
66 TATTT
73189839 TAATAATTCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (76 bp):
TCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGAGG
TATTTCGGTAT
Found at i:73189818 original size:103 final size:104
Alignment explanation
Indices: 73189667--73189879 Score: 351
Period size: 103 Copynumber: 2.1 Consensus size: 104
73189657 GTATTTCTAC
* * *
73189667 CCTATAAGGGTATTTCGGTAATTCTATCCTACAAGGGTATTTCGGTAATTCTACCCTACATG-GG
1 CCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACA-GAGG
73189731 TATTTCAATAATTCTACCCTATAGGGGTATTTCGGT-ATT
65 TATTTCAATAATTCTACCCTATAGGGGTATTTCGGTAATT
*
73189770 CCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGAGGT
1 CCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGAGGT
*
73189835 ATTTTAATAATTCTACCCTATAGGGGTATTTCGGTAATT
66 ATTTCAATAATTCTACCCTATAGGGGTATTTCGGTAATT
73189874 -CTACAA
1 CCTACAA
73189880 CTTATCCACT
Statistics
Matches: 103, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
102 1 0.01
103 99 0.96
104 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (104 bp):
CCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGAGGT
ATTTCAATAATTCTACCCTATAGGGGTATTTCGGTAATT
Found at i:73196738 original size:67 final size:69
Alignment explanation
Indices: 73196599--73196740 Score: 198
Period size: 67 Copynumber: 2.1 Consensus size: 69
73196589 TCACCAGATA
* * *
73196599 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCAAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACAAAGCCACCAGAACAGA-ATATATA-GTGGCAAAGCCACCAGATTGCAGCGA
*
73196664 GGCTGC
64 GGATGC
* *
73196670 CAGATATTGTGACAAAGTCACCAGAACAG-ATATATA-TGGCGAAGCCACCAGATTGCAGCGAGG
1 CAGATATTGTGACAAAGCCACCAGAACAGAATATATAGTGGCAAAGCCACCAGATTGCAGCGAGG
73196733 ATGC
66 ATGC
73196737 CAGA
1 CAGA
73196741 ACGCTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 33 0.51
69 7 0.11
71 25 0.38
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (69 bp):
CAGATATTGTGACAAAGCCACCAGAACAGAATATATAGTGGCAAAGCCACCAGATTGCAGCGAGG
ATGC
Found at i:73197432 original size:26 final size:27
Alignment explanation
Indices: 73197375--73197437 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
73197365 GCAAAATGGA
73197375 AATTTTACCCCACAAGGGTATCTCGGT
1 AATTTTACCCCACAAGGGTATCTCGGT
* * *
73197402 AATTTTACCCTACAGGGGTATTTCGGT
1 AATTTTACCCCACAAGGGTATCTCGGT
73197429 -ATTTCTACC
1 AATTT-TACC
73197438 TCGATAATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (27 bp):
AATTTTACCCCACAAGGGTATCTCGGT
Found at i:73197458 original size:41 final size:41
Alignment explanation
Indices: 73197396--73197478 Score: 121
Period size: 41 Copynumber: 2.0 Consensus size: 41
73197386 ACAAGGGTAT
* * * *
73197396 CTCGGTAATTTTACCCTACAGGGGTATTTCGGTATTTCTAC
1 CTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
*
73197437 CTCGATAATTCTATCCTACAGGGGTATTTCGATAATTCTAC
1 CTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
73197478 C
1 C
73197479 CTACAGGGGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (41 bp):
CTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
Found at i:73197476 original size:27 final size:27
Alignment explanation
Indices: 73197438--73197638 Score: 251
Period size: 27 Copynumber: 7.5 Consensus size: 27
73197428 TATTTCTACC
*
73197438 TCGATAATTCTATCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
73197465 TCGATAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* *
73197492 TCAATAATTCTACCCTATAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* * *
73197519 TCGGTATTTCTACCCTACAAGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* * *
73197546 TCGGTATTTCTACCCTACAAGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* *
73197573 TCGGTAATTCTACCTTACA-GGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
** * *
73197599 TTAATAATTCTACCTTACAGGCGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
73197626 TCGGTAATTCTAC
1 TCGATAATTCTAC
73197639 AACTTATCCA
Statistics
Matches: 156, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 23 0.15
27 133 0.85
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (27 bp):
TCGATAATTCTACCCTACAGGGGTATT
Found at i:73205238 original size:16 final size:18
Alignment explanation
Indices: 73205217--73205249 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
73205207 CATAAAAGCT
73205217 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
73205233 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
73205250 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:73205874 original size:87 final size:87
Alignment explanation
Indices: 73205776--73206102 Score: 593
Period size: 87 Copynumber: 3.7 Consensus size: 87
73205766 CCGAATTCTT
73205776 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGTATTATAGCCTACTAG
1 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGTATTATAGCCTACTAG
73205841 GCTCGAAAGCCCAAATAGTATC
66 GCTCGAAAGCCCAAATAGTATC
73205863 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGTATTATAGCCTACTAG
1 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGTATTATAGCCTACTAG
73205928 GCTCGAAAGCCCAAATAGTATC
66 GCTCGAAAGCCCAAATAGTATC
73205950 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGTATTATAGCCTACTAG
1 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGTATTATAGCCTACTAG
73206015 GCTCGAAAGCCCAAATAGTATC
66 GCTCGAAAGCCCAAATAGTATC
* * * *
73206037 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGAATAGT-ATCTCACTGGCATTATAGCCTGCT
1 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCG-ATA-TCATTTCACCGGTATTATAGCCTACT
73206101 AG
64 AG
73206103 ACTCAATGGC
Statistics
Matches: 234, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
87 208 0.89
88 25 0.11
89 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (87 bp):
TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGTATTATAGCCTACTAG
GCTCGAAAGCCCAAATAGTATC
Found at i:73205928 original size:43 final size:42
Alignment explanation
Indices: 73205776--73206102 Score: 327
Period size: 43 Copynumber: 7.5 Consensus size: 42
73205766 CCGAATTCTT
* *
73205776 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATA-TCATT
1 TCACCGGCATTTAGCCTGCTAGGCTTGAAGCCCGATAGT-ATC
* * * *
73205818 TCACCGGTATTATAGCCTACTAGGCTCGAAAGCCCAAATAGTATC
1 TCACCGGCATT-TAGCCTGCTAGGCTTG-AAGCCC-GATAGTATC
* *
73205863 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATA-TCATT
1 TCACCGGCATTTAGCCTGCTAGGCTTGAAGCCCGATAGT-ATC
* * * *
73205905 TCACCGGTATTATAGCCTACTAGGCTCGAAAGCCCAAATAGTATC
1 TCACCGGCATT-TAGCCTGCTAGGCTTG-AAGCCC-GATAGTATC
* *
73205950 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATA-TCATT
1 TCACCGGCATTTAGCCTGCTAGGCTTGAAGCCCGATAGT-ATC
* * * *
73205992 TCACCGGTATTATAGCCTACTAGGCTCGAAAGCCCAAATAGTATC
1 TCACCGGCATT-TAGCCTGCTAGGCTTG-AAGCCC-GATAGTATC
*
73206037 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGAATAGTATC
1 TCACCGGCATTTAGCCTGCTAGGCTTGAAGCCCG-ATAGTATC
*
73206080 TCACTGGCATTATAGCCTGCTAG
1 TCACCGGCATT-TAGCCTGCTAG
73206103 ACTCAATGGC
Statistics
Matches: 232, Mismatches: 37, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.01
42 40 0.17
43 75 0.32
44 67 0.29
45 45 0.19
46 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (42 bp):
TCACCGGCATTTAGCCTGCTAGGCTTGAAGCCCGATAGTATC
Found at i:73206980 original size:47 final size:46
Alignment explanation
Indices: 73206925--73207066 Score: 230
Period size: 47 Copynumber: 3.0 Consensus size: 46
73206915 AAAATTTTCT
* *
73206925 TTAACTAAGTAACTTATCCGGAAATAATAAGGGAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAG-AAATTTAACAAGC
*
73206972 TTAACTAAGTAACTTATCCAGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAG-AAATTTAACAAGC
*
73207019 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGAAATTTAACAAGC
73207065 TT
1 TT
73207067 TAAATTCAAC
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 14 0.16
47 75 0.84
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (46 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGAGAAATTTAACAAGC
Found at i:73209473 original size:43 final size:43
Alignment explanation
Indices: 73209421--73209577 Score: 278
Period size: 43 Copynumber: 3.7 Consensus size: 43
73209411 CCGGCATTAC
*
73209421 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
73209464 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACAAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
73209507 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
73209550 GCCTGCTAGGCACGAAGGCCTGAATACA
1 GCCTGCTAGGCACGAAGGCCCGAATACA
73209578 ATACCAGTAC
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 108 1.00
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:73209620 original size:38 final size:38
Alignment explanation
Indices: 73209577--73209691 Score: 131
Period size: 38 Copynumber: 3.0 Consensus size: 38
73209567 GCCTGAATAC
* * * * *
73209577 AATACCAGTACTAGGCCTGCGGGATTTATCTCGGATAT
1 AATACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
73209615 AATACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 AATACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
** * *
73209653 TTTACCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATA
1 AATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGGATA
73209692 CACATCAAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
38 53 0.80
39 5 0.08
40 8 0.12
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (38 bp):
AATACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:73223204 original size:14 final size:14
Alignment explanation
Indices: 73223185--73223212 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73223175 TGAGTAAAGA
73223185 AATTTCTTTGAATT
1 AATTTCTTTGAATT
73223199 AATTTCTTTGAATT
1 AATTTCTTTGAATT
73223213 TTTATTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (14 bp):
AATTTCTTTGAATT
Found at i:73228613 original size:21 final size:20
Alignment explanation
Indices: 73228575--73228613 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
73228565 CCCTGTTCTG
* *
73228575 AATTTGAAAAATCATTAGAA
1 AATTTAAAAAATAATTAGAA
73228595 AATTTAAAACAATAATTAG
1 AATTTAAAA-AATAATTAG
73228614 GGTTATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (20 bp):
AATTTAAAAAATAATTAGAA
Found at i:73230658 original size:37 final size:37
Alignment explanation
Indices: 73230604--73230697 Score: 136
Period size: 37 Copynumber: 2.5 Consensus size: 37
73230594 ATGTGGTACG
* *
73230604 TGTAAGACCATAACTGGGCTATGGCATCGTAAT-AGCA
1 TGTAAGACCATAGCTGGGCTATAGCATCGTAATGA-CA
*
73230641 TGTAAGACCATAGCTGGGCTATAGCATCGTGATGACA
1 TGTAAGACCATAGCTGGGCTATAGCATCGTAATGACA
*
73230678 TGTAAGACTATAGCTGGGCT
1 TGTAAGACCATAGCTGGGCT
73230698 GTGACAGCCC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
37 51 0.98
38 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (37 bp):
TGTAAGACCATAGCTGGGCTATAGCATCGTAATGACA
Found at i:73232414 original size:27 final size:26
Alignment explanation
Indices: 73232358--73232508 Score: 115
Period size: 27 Copynumber: 5.6 Consensus size: 26
73232348 AAATTGTACA
* * *
73232358 GCACTAAGTGTGCG-ATTCTACTTTGTT
1 GCACTAAGTGTGCGAAAT-GACTATG-T
*
73232385 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAAATGACTATG-T
* * *
73232412 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAAATGACTATG-T
*
73232439 GCACTAAGTGTGCGAGATGGACTATGT
1 GCACTAAGTGTGCGAAAT-GACTATGT
** * *
73232466 GGCACTAAGTGTGCGATTTGATTACGT
1 -GCACTAAGTGTGCGAAATGACTATGT
*
73232493 GGCACTAAATGTGCGA
1 -GCACTAAGTGTGCGA
73232509 GTTGATTATA
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
27 78 0.76
28 24 0.24
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGAAATGACTATGT
Found at i:73232418 original size:54 final size:54
Alignment explanation
Indices: 73232358--73232483 Score: 148
Period size: 54 Copynumber: 2.3 Consensus size: 54
73232348 AAATTGTACA
* ** **
73232358 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAAT-GAATATGAT-
1 GCACTAAGTGTGCGATT-GACCATGCGGCACTAAGTGTGCGAAATGGAATATG-TG
* *
73232412 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCG-ATTGACCATGCGGCACTAAGTGTGCGAAATGGAATATGTG
73232467 GCACTAAGTGTGCGATT
1 GCACTAAGTGTGCGATT
73232484 TGATTACGTG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
54 39 0.63
55 23 0.37
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTGACCATGCGGCACTAAGTGTGCGAAATGGAATATGTG
Found at i:73232481 original size:55 final size:54
Alignment explanation
Indices: 73232385--73232534 Score: 160
Period size: 55 Copynumber: 2.8 Consensus size: 54
73232375 CTACTTTGTT
* *
73232385 GCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGATGAATATGATGCACTAAGTGTGCGAATTGACCACGCG
* * ** *
73232439 GCACTAAGTGTGCGAGATGGACTATG-TGGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGAT-GAATATGAT-GCACTAAGTGTGCGAATTGACCACGCG
* * * *
73232494 GCACTAAATGTGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGATGAATATGAT-GCACTAAGTGTGCG
73232535 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
54 37 0.46
55 44 0.54
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGATGAATATGATGCACTAAGTGTGCGAATTGACCACGCG
Found at i:73232498 original size:82 final size:81
Alignment explanation
Indices: 73232358--73232513 Score: 188
Period size: 82 Copynumber: 1.9 Consensus size: 81
73232348 AAATTGTACA
* * * * * *
73232358 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
73232423 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
73232439 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAAT
1 GCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAAT
*
73232503 GTGCGAGTTGA
64 GTGCGAATTGA
73232514 TTATATAGCA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:73232513 original size:27 final size:27
Alignment explanation
Indices: 73232385--73232534 Score: 113
Period size: 27 Copynumber: 5.5 Consensus size: 27
73232375 CTACTTTGTT
** * *
73232385 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAGTTGATTACG-TG
* ** * *
73232412 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGATTACGTG
* * *
73232439 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGAG-TTGATTACGTG
*
73232467 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGTTGATTACGTG
* ** *
73232494 GCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGTTGATTACGTG
*
73232521 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
73232535 GGCTCAATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
27 79 0.77
28 23 0.23
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGATTACGTG
Found at i:73242653 original size:42 final size:42
Alignment explanation
Indices: 73242606--73242898 Score: 184
Period size: 42 Copynumber: 6.7 Consensus size: 42
73242596 ATTGTGATAC
* *
73242606 GTGTAAGACCATGTCTGGGACATGGCATCCATATGAGATCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATCTT
* *
73242648 GTGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGAGATCTT
1 GTGTAAGACCATGTCTGGG--A---CAT-GGCATCGATATGAGATCTT
* * *
73242696 GTGTAAGACCATATCTAGGATATGACATCGGCATCGATATAAGAT-TAC
1 GTGTAAGACCATGTCT-GG----GACAT-GGCATCGATATGAGATCT-T
* * * * *
73242744 ATGTAAGACCATATCTGGGATATGGCTTCGGTATGAGAT-TT
1 GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATCTT
* *** *
73242785 CGTGTAAGACCGTGTCTGGGATGCGGCATCGATATGTGAT-TT
1 -GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATCTT
* * * * *
73242827 CATATAAGACCATGTCTGAGACATGGCATTGATGTGAGA-CTTT
1 -GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATC-TT
73242870 GTGTAAGACCATAGT-T-GGACTATGGCATC
1 GTGTAAGACCAT-GTCTGGGAC-ATGGCATC
73242899 AAGTAAACGA
Statistics
Matches: 199, Mismatches: 35, Indels: 34
0.74 0.13 0.13
Matches are distributed among these distances:
41 3 0.02
42 112 0.56
43 8 0.04
44 1 0.01
47 6 0.03
48 65 0.33
49 2 0.01
51 1 0.01
53 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATCTT
Found at i:73242701 original size:48 final size:48
Alignment explanation
Indices: 73242630--73242769 Score: 192
Period size: 48 Copynumber: 2.9 Consensus size: 48
73242620 CTGGGACATG
* *
73242630 GCATCCATATGAGATCCTGTGTAAGACCATATCTGGGATATGGCATCA
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGGCATCA
* * *
73242678 GCATCGATATGAGATCTTGTGTAAGACCATATCTAGGATATGACATCG
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGGCATCA
* **
73242726 GCATCGATATAAGAT-TACATGTAAGACCATATCTGGGATATGGC
1 GCATCGATATGAGATCT-TGTGTAAGACCATATCTGGGATATGGC
73242770 TTCGGTATGA
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 1 0.01
48 80 0.99
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (48 bp):
GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGGCATCA
Found at i:73245982 original size:40 final size:40
Alignment explanation
Indices: 73245938--73246013 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
73245928 GCTAAAAAAA
*
73245938 TGGCACTTAGTGTGCGGTTCGAAATAACTTCGACTAAATG
1 TGGCACTTAGTGTGCGATTCGAAATAACTTCGACTAAATG
* * * *
73245978 TGGCACTTGGTGTGCGATTGGAGATAGCTTCGACTA
1 TGGCACTTAGTGTGCGATTCGAAATAACTTCGACTA
73246014 TATATGTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGAAATAACTTCGACTAAATG
Found at i:73246098 original size:28 final size:28
Alignment explanation
Indices: 73246022--73246098 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
73246012 TATATATGTA
* *
73246022 TATGGCACTTAGTGTGCAAAATATTAAG
1 TATGGCACTTAGTGTGCGAGATATTAAG
* * * * *
73246050 AATGGAACTTGGTGTGTGAGATATTGAG
1 TATGGCACTTAGTGTGCGAGATATTAAG
*
73246078 TATGGCACTTAGTGTACGAGA
1 TATGGCACTTAGTGTGCGAGA
73246099 CATCGAAGAT
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (28 bp):
TATGGCACTTAGTGTGCGAGATATTAAG
Found at i:73247712 original size:18 final size:19
Alignment explanation
Indices: 73247688--73247730 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
73247678 GTAACGCCCC
73247688 AATTTTCGGGATCTTC-GAG
1 AATTTTCGGGAT-TTCTGAG
73247707 -ATTTTCGGGATTTCTGAG
1 AATTTTCGGGATTTCTGAG
73247725 AATTTT
1 AATTTT
73247731 AGCGAATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.14
18 14 0.64
19 5 0.23
ACGTcount: A:0.21, C:0.12, G:0.23, T:0.44
Consensus pattern (19 bp):
AATTTTCGGGATTTCTGAG
Found at i:73249567 original size:27 final size:26
Alignment explanation
Indices: 73249529--73249610 Score: 119
Period size: 27 Copynumber: 3.1 Consensus size: 26
73249519 GGAGGAAGTA
73249529 TTCTGGTGGCTCTGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCAC-AATATCTG
73249556 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTCTGCCACAATATCTG
* * *
73249582 TATCTGGTGACCCTGTCACAATATCTG
1 T-TCTGGTGGCTCTGCCACAATATCTG
73249609 TT
1 TT
73249611 TTGGCAGCCA
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:73250642 original size:38 final size:38
Alignment explanation
Indices: 73250566--73250643 Score: 120
Period size: 38 Copynumber: 2.1 Consensus size: 38
73250556 TTAGAATGCC
* **
73250566 TAAGAGCCCTCAAAAGTGTCCTTTTCTGAATAGGACTA
1 TAAGAGCCCTCAAAAGTGGCCTTTTCTGAATAAAACTA
*
73250604 TAAGAGCCCTCAAAAGTGGCCTTTTTTGAATAAAACTA
1 TAAGAGCCCTCAAAAGTGGCCTTTTCTGAATAAAACTA
73250642 TA
1 TA
73250644 CTTGGGCTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (38 bp):
TAAGAGCCCTCAAAAGTGGCCTTTTCTGAATAAAACTA
Found at i:73267976 original size:18 final size:19
Alignment explanation
Indices: 73267944--73267980 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
73267934 CTTTTATATA
73267944 GATTATAAATATTAAACTT
1 GATTATAAATATTAAACTT
*
73267963 GATTA-AAATGTTAAACTT
1 GATTATAAATATTAAACTT
73267981 AGTTTCATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (19 bp):
GATTATAAATATTAAACTT
Found at i:73269608 original size:39 final size:40
Alignment explanation
Indices: 73269509--73269601 Score: 143
Period size: 39 Copynumber: 2.4 Consensus size: 40
73269499 TTTAGTGGCT
* * * *
73269509 TTAGCGGCTCTTTTGTAAAAACGCCGCTATAGGTCGAGTT
1 TTAGTGGCGCTTTTGTAAAAACGCCGCTATAGGTCAAGTA
73269549 TTAGTGGCGCTTTTGTAAAAA-GCCGCTATAGGTCAAGTA
1 TTAGTGGCGCTTTTGTAAAAACGCCGCTATAGGTCAAGTA
73269588 TTAGTGGCGCTTTT
1 TTAGTGGCGCTTTT
73269602 TGAAAAATGC
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 30 0.61
40 19 0.39
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (40 bp):
TTAGTGGCGCTTTTGTAAAAACGCCGCTATAGGTCAAGTA
Found at i:73270226 original size:42 final size:42
Alignment explanation
Indices: 73270167--73270394 Score: 197
Period size: 42 Copynumber: 5.4 Consensus size: 42
73270157 TTTTTATGAC
* * * *
73270167 CTTTAGTGGCGTTTTTGGGAAAGCGTTGCTAAAAGTTAGATT
1 CTTTAGCGGCGTTTTTGGGAAAGCGTCGCTAAAAGTCAGGTT
* *
73270209 CTTTAGCGGTGTTTTT-GGAATAGCGTCACTAAAAGTCAGGTT
1 CTTTAGCGGCGTTTTTGGGAA-AGCGTCGCTAAAAGTCAGGTT
* * * * * * *
73270251 ATTTAGCGACTTTTTTTGAAAAGCGCCGCTAAAAGTTAGGTT
1 CTTTAGCGGCGTTTTTGGGAAAGCGTCGCTAAAAGTCAGGTT
* * * * *
73270293 CTTTAGCGGCCTTTGTGGAGAAAGCATCGCTAAAGGTCATGTT
1 CTTTAGCGGCGTTTTTGG-GAAAGCGTCGCTAAAAGTCAGGTT
* * * *
73270336 CTTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGTT
1 CTTTAGCGGCGTTTTTGGG-AAAGCGTCGCTAAAAGTCAGGTT
* * *
73270379 CTATAACGGCATTTTT
1 CTTTAGCGGCGTTTTT
73270395 TCACATTAAC
Statistics
Matches: 147, Mismatches: 35, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
41 4 0.03
42 75 0.51
43 68 0.46
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.34
Consensus pattern (42 bp):
CTTTAGCGGCGTTTTTGGGAAAGCGTCGCTAAAAGTCAGGTT
Found at i:73270337 original size:43 final size:43
Alignment explanation
Indices: 73270237--73270380 Score: 139
Period size: 43 Copynumber: 3.4 Consensus size: 43
73270227 AATAGCGTCA
* * * * ** *
73270237 CTAAAAGTCAGGTTATTTAGC-GACTTTTTTTGAAAAGCGCCG
1 CTAAAAGTCATGTTCTTTAGCAGCCTTTGTGGGAAAAGCACCG
* * * *
73270279 CTAAAAGTTAGGTTCTTTAGCGGCCTTTGT-GGAGAAAGCATCG
1 CTAAAAGTCATGTTCTTTAGCAGCCTTTGTGGGA-AAAGCACCG
* * *
73270322 CTAAAGGTCATGTTCTTTAGCAGCGTTTGTGGGAAAAGCGCCG
1 CTAAAAGTCATGTTCTTTAGCAGCCTTTGTGGGAAAAGCACCG
73270365 CTAAAAGTCATGTTCT
1 CTAAAAGTCATGTTCT
73270381 ATAACGGCAT
Statistics
Matches: 84, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
42 21 0.25
43 60 0.71
44 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
CTAAAAGTCATGTTCTTTAGCAGCCTTTGTGGGAAAAGCACCG
Found at i:73272959 original size:28 final size:28
Alignment explanation
Indices: 73272872--73272971 Score: 85
Period size: 28 Copynumber: 3.6 Consensus size: 28
73272862 TCGATGCCTC
* * * *
73272872 GCACACTATGTACCATACTCGATACCTC
1 GCACACTAAGTGCCATACTCGATACTTT
* * * * *
73272900 GCACGCTAAGTGCTATTCTGGAT-GTTT
1 GCACACTAAGTGCCATACTCGATACTTT
*
73272927 CGCACACTAAGTGCCATCCTCGATACTTT
1 -GCACACTAAGTGCCATACTCGATACTTT
*
73272956 GCACACTAAGTTCCAT
1 GCACACTAAGTGCCAT
73272972 TTATATATAT
Statistics
Matches: 55, Mismatches: 15, Indels: 4
0.74 0.20 0.05
Matches are distributed among these distances:
27 1 0.02
28 51 0.93
29 3 0.05
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (28 bp):
GCACACTAAGTGCCATACTCGATACTTT
Found at i:73273057 original size:40 final size:39
Alignment explanation
Indices: 73272985--73273069 Score: 107
Period size: 40 Copynumber: 2.2 Consensus size: 39
73272975 TATATATATA
** *
73272985 TAGCCGAAGCTATCTCAAATTTCACACCAAGTGCCACTTT
1 TAGCCGAAGCTATCTCAAATCGCACAACAAGTGCCA-TTT
* * *
73273025 TAGCCGAAGCTATTTCGAATCGCACAATAAGTGCCATTT
1 TAGCCGAAGCTATCTCAAATCGCACAACAAGTGCCATTT
73273064 TAGCCG
1 TAGCCG
73273070 GTAAGTCGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 9 0.23
40 30 0.77
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAATCGCACAACAAGTGCCATTT
Found at i:73279360 original size:29 final size:28
Alignment explanation
Indices: 73279318--73279379 Score: 106
Period size: 29 Copynumber: 2.2 Consensus size: 28
73279308 TTGTAAGAGA
*
73279318 TACCTTTTTGTGATAGATACCATTTCAG
1 TACCTTCTTGTGATAGATACCATTTCAG
73279346 TTACCTTCTTGTGATAGATACCATTTCAG
1 -TACCTTCTTGTGATAGATACCATTTCAG
73279375 TACCT
1 TACCT
73279380 GAAACTCACC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 5 0.16
29 27 0.84
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (28 bp):
TACCTTCTTGTGATAGATACCATTTCAG
Found at i:73281470 original size:51 final size:51
Alignment explanation
Indices: 73281414--73281515 Score: 168
Period size: 51 Copynumber: 2.0 Consensus size: 51
73281404 GTTCGGTTCA
*
73281414 TGGTGGTCTATACAAATTGCATCTAAACATTGTTGTCAAGTCTACTGAACC
1 TGGTGGTCTATACAAATTGCATCTAAACATTGTTGTCAAGTCTACTAAACC
* * *
73281465 TGGTGGTCTCTACAAATTTCATCTAAACATTGTTTTCAAGTCTACTAAACC
1 TGGTGGTCTATACAAATTGCATCTAAACATTGTTGTCAAGTCTACTAAACC
73281516 GCTACTTCAA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (51 bp):
TGGTGGTCTATACAAATTGCATCTAAACATTGTTGTCAAGTCTACTAAACC
Found at i:73287582 original size:43 final size:41
Alignment explanation
Indices: 73287448--73287607 Score: 144
Period size: 43 Copynumber: 3.8 Consensus size: 41
73287438 ATATGTGTTC
*
73287448 TCATGTAAGACCACGTCTGGAACGTTGGCATCGATATGTGAT
1 TCATGTAAGACCACGTCTGGGACGTTGGCATCGA-ATGTGAT
* * * * * *
73287490 T-TTGAGTAAGACCATGTCTGAGACATCGGCATCGTAATTGTGGT
1 TCAT--GTAAGACCACGTCTGGGACGTTGGCATCG-AA-TGTGAT
**
73287534 TCATGTAAGACCTTGTCTGGGACAG-TGGCATCGACATGTGAT
1 TCATGTAAGACCACGTCTGGGAC-GTTGGCATCGA-ATGTGAT
*
73287576 TACATGTAACACCACGTCTGGGACGTTGGCAT
1 T-CATGTAAGACCACGTCTGGGACGTTGGCAT
73287608 TATACGATAT
Statistics
Matches: 93, Mismatches: 16, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
41 1 0.01
42 9 0.10
43 75 0.81
44 7 0.08
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (41 bp):
TCATGTAAGACCACGTCTGGGACGTTGGCATCGAATGTGAT
Found at i:73296811 original size:6 final size:6
Alignment explanation
Indices: 73296776--73296826 Score: 59
Period size: 6 Copynumber: 8.2 Consensus size: 6
73296766 TTTGAGTCCA
*
73296776 TTTATTT TTTATCT TTTATT TTTCA-C TTTATT TTTATT TTTATT TTTATT
1 TTTA-TT TTTAT-T TTTATT TTT-ATT TTTATT TTTATT TTTATT TTTATT
73296826 T
1 T
73296827 AAGAATTGTC
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
5 1 0.03
6 27 0.69
7 11 0.28
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:73311251 original size:22 final size:22
Alignment explanation
Indices: 73311226--73311270 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
73311216 TTATATAAGT
73311226 AACCCTTAATAAATTATATGCA
1 AACCCTTAATAAATTATATGCA
73311248 AACCCTTAATAAATTATATGCA
1 AACCCTTAATAAATTATATGCA
73311270 A
1 A
73311271 TTAAATTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (22 bp):
AACCCTTAATAAATTATATGCA
Found at i:73317303 original size:19 final size:20
Alignment explanation
Indices: 73317279--73317319 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
73317269 AAATTTAGGC
*
73317279 AAATATTGAATA-AAAATTG
1 AAATATTCAATATAAAATTG
*
73317298 AAATATTCAATATGAAATTG
1 AAATATTCAATATAAAATTG
73317318 AA
1 AA
73317320 TTGTGTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (20 bp):
AAATATTCAATATAAAATTG
Found at i:73319593 original size:42 final size:42
Alignment explanation
Indices: 73319482--73319720 Score: 191
Period size: 42 Copynumber: 5.6 Consensus size: 42
73319472 ATGTCGTACA
* * * *** *
73319482 ATGCCATATCCCGGATATGGTCTTACATGTAATCTCATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACAAAATCTCATATCG
* * *
73319524 AAGCCAATAG-CCCAG-CTATGGTCTTACATAAAATCTCATAACG
1 ATGCC-AT-GTCCCAGAC-ATGGTCTTACACAAAATCTCATATCG
** *
73319567 ATGCCATGTCCCAGACATGGTCTTACACGTAATATCATATCG
1 ATGCCATGTCCCAGACATGGTCTTACACAAAATCTCATATCG
* ** *
73319609 ATGCCAATAG-CCCAG-CTATGGTCTTACACAGAATCTTGTATTG
1 ATGCC-AT-GTCCCAGAC-ATGGTCTTACACAAAATCTCATATCG
* * * *
73319652 ATGCCATATCCCAGATATGGTCTTACACAAAATATCATATCAA
1 ATGCCATGTCCCAGACATGGTCTTACACAAAATCTCATATC-G
73319695 AT-CCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
73319721 TGAAGTCTCA
Statistics
Matches: 156, Mismatches: 30, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 87 0.56
43 67 0.43
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACAAAATCTCATATCG
Found at i:73319625 original size:85 final size:85
Alignment explanation
Indices: 73319482--73319740 Score: 301
Period size: 85 Copynumber: 3.1 Consensus size: 85
73319472 ATGTCGTACA
* * * *
73319482 ATGCCATATCCCGGATATGGTCTTACATGTAATCTCATATCAAAGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCAATGCCAATAGCCCAGCTATGGTC
73319547 TTACATAAAATCTCATAACG
66 TTACATAAAATCTCATAACG
* * *
73319567 ATGCCATGTCCCAGACATGGTCTTACACGTAATATCATATCGATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCAATGCCAATAGCCCAGCTATGGTC
* * ** **
73319632 TTACACAGAATCTTGTATTG
66 TTACATAAAATCTCATAACG
**
73319652 ATGCCATATCCCAGATATGGTCTTACACAAAATATCATATCAAAT-CC-AT-GTCCCAGAC-ATG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATC-AATGCCAATAG-CCCAG-CTATG
* *
73319713 GTCTTACATGAAGTCTCATAACG
63 GTCTTACATAAAATCTCATAACG
*
73319736 GTGCC
1 ATGCC
73319741 GATACCATGC
Statistics
Matches: 144, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
83 1 0.01
84 29 0.20
85 112 0.78
86 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (85 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCAATGCCAATAGCCCAGCTATGGTC
TTACATAAAATCTCATAACG
Found at i:73319803 original size:48 final size:48
Alignment explanation
Indices: 73319751--73319879 Score: 163
Period size: 48 Copynumber: 2.7 Consensus size: 48
73319741 GATACCATGC
* * *
73319751 CCCAGACATGGTCTTATACGGGACCTCATA-TCGATGCCAATG-TCATAT
1 CCCAGATATGGTCTTATATGGGATCTCATACT-GATGCCAATGCT-ATAT
* *
73319799 CCCAGATATGGTCTTACATGGGATCTCATACTGATGCCGATGCTATAT
1 CCCAGATATGGTCTTATATGGGATCTCATACTGATGCCAATGCTATAT
*
73319847 CCCATATATGGTCTTATATGGGATCTCAATACT
1 CCCAGATATGGTCTTATATGGGATCTC-ATACT
73319880 CACATGTTGT
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
48 64 0.90
49 7 0.10
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (48 bp):
CCCAGATATGGTCTTATATGGGATCTCATACTGATGCCAATGCTATAT
Found at i:73326267 original size:33 final size:33
Alignment explanation
Indices: 73326225--73326293 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
73326215 TTATTAAAAC
73326225 ACTCTAGGTAGTGTAAATTGAAAACCGTAGTAA
1 ACTCTAGGTAGTGTAAATTGAAAACCGTAGTAA
*
73326258 ACTCTAGGTAGTGTAAATTGAAAATCGTAGTAA
1 ACTCTAGGTAGTGTAAATTGAAAACCGTAGTAA
73326291 ACT
1 ACT
73326294 ATGATTTGCG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (33 bp):
ACTCTAGGTAGTGTAAATTGAAAACCGTAGTAA
Found at i:73327933 original size:37 final size:37
Alignment explanation
Indices: 73327880--73327952 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
73327870 TTTGGGAAGT
73327880 TCGACTTAATTCTGGGTATAGACTGGTTGCTGAAGCG
1 TCGACTTAATTCTGGGTATAGACTGGTTGCTGAAGCG
* * *
73327917 TCGACTTAATTTTGGGTATGGACTGGTTGGTGAAGC
1 TCGACTTAATTCTGGGTATAGACTGGTTGCTGAAGC
73327953 ATCGTGTAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.21, C:0.14, G:0.32, T:0.34
Consensus pattern (37 bp):
TCGACTTAATTCTGGGTATAGACTGGTTGCTGAAGCG
Found at i:73338137 original size:16 final size:16
Alignment explanation
Indices: 73338116--73338170 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
73338106 TTATGTATAA
73338116 ATAAATAAATTATATC
1 ATAAATAAATTATATC
73338132 ATAAATAAATTAT-TC
1 ATAAATAAATTATATC
* * *
73338147 AAATAATCAATCATATC
1 ATA-AATAAATTATATC
73338164 ATAAATA
1 ATAAATA
73338171 TTCAAATATT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 4 0.12
16 24 0.75
17 4 0.12
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (16 bp):
ATAAATAAATTATATC
Found at i:73343369 original size:289 final size:290
Alignment explanation
Indices: 73342850--73343430 Score: 880
Period size: 289 Copynumber: 2.0 Consensus size: 290
73342840 AATTTAACTC
*
73342850 ATTTTGGAAAACCACAGTTACACTTGAGTTAGTTCGAAAAATATTCATTTATTGAACCATTTATT
1 ATTTTGGAAAACCACAGTTACACTTGAGTTAGTTCGAAAAATATTCATTTATTGAACCATCTATT
* * * * * *
73342915 CTTAAGTCTCATTTTTATTATTGATATTGATGTTTATAGAAACTCGTTGTTTGTTGCTTTGTTTT
66 CTTAAGCCTCATTTTTATTATTGATAGTGATGTTTATAGAAACCCATTGTTTGTCGCTTAGTTTT
* * * *
73342980 GCAAAATTTCGTTATCTTTCAAAATAGTGGAAATATACTATTCATGTCAGATTTTAATTAGGTCA
131 ACAAAATTTCGTTATCTTTCAAAATAGTGGAAAAACACTATTCAGGTCAGATTTTAATTAGGTCA
* * *
73343045 AGTAACATGCATTTTTCGATTAACATATATAATCAACGAGTTTGAATAATGCATGCATAAAACTC
196 AGTAACATGCATTTTTCGATTAAAATATATAATCAACGAGTTTGAATAATACATGCATAAAACCC
73343110 AAATCCAAAAA-CCCATAAC-ACAATCCAAA
261 AAATCCAAAAACCCCA-AACTACAATCCAAA
* * * * *
73343139 ATTTTGGAAAACTACGGTTGCACTTGAGTTAGTTTGAAAAATATTCATTTATTGAGCCATCTATT
1 ATTTTGGAAAACCACAGTTACACTTGAGTTAGTTCGAAAAATATTCATTTATTGAACCATCTATT
*
73343204 CTTAAGCCTCATTTTTATTATTGATAGTGATGTTTTTAGAAACCCATTGTCTT-TCGCTTAGTTT
66 CTTAAGCCTCATTTTTATTATTGATAGTGATGTTTATAGAAACCCATTGT-TTGTCGCTTAGTTT
* *
73343268 TACAAAATTTTGTTATCTTTCAAAGTAGTGGAAAAACACTATTCAGGTCAGATTTTAATTAGGTC
130 TACAAAATTTCGTTATCTTTCAAAATAGTGGAAAAACACTATTCAGGTCAGATTTTAATTAGGTC
* * * *
73343333 GAGTAACATGCATTTTTCGGTTAAAATATATAATCAATGTGTTTGAATAATACATGCATAAAACC
195 AAGTAACATGCATTTTTCGATTAAAATATATAATCAACGAGTTTGAATAATACATGCATAAAACC
*
73343398 CAAATCCAAAAACCCCAAACTACAGTCCAAA
260 CAAATCCAAAAACCCCAAACTACAATCCAAA
73343429 AT
1 AT
73343431 GATATTTTAC
Statistics
Matches: 262, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
289 245 0.94
290 17 0.06
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (290 bp):
ATTTTGGAAAACCACAGTTACACTTGAGTTAGTTCGAAAAATATTCATTTATTGAACCATCTATT
CTTAAGCCTCATTTTTATTATTGATAGTGATGTTTATAGAAACCCATTGTTTGTCGCTTAGTTTT
ACAAAATTTCGTTATCTTTCAAAATAGTGGAAAAACACTATTCAGGTCAGATTTTAATTAGGTCA
AGTAACATGCATTTTTCGATTAAAATATATAATCAACGAGTTTGAATAATACATGCATAAAACCC
AAATCCAAAAACCCCAAACTACAATCCAAA
Found at i:73343908 original size:39 final size:40
Alignment explanation
Indices: 73343816--73343909 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
73343806 CATGTTTTAC
* *
73343816 ATGCTTACGGTAACATATTCAATTCAACGACATGCTTAAT
1 ATGCTTACGGTAACATATTCAATTCAACGACACGCTTAAG
* * ** *
73343856 ATGCTTACAGTAACATATTCAGTTCAGTGGCACG-TTAAG
1 ATGCTTACGGTAACATATTCAATTCAACGACACGCTTAAG
73343895 ATGCTTACGGTAACA
1 ATGCTTACGGTAACA
73343910 ATTTAAGTAC
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
39 18 0.39
40 28 0.61
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (40 bp):
ATGCTTACGGTAACATATTCAATTCAACGACACGCTTAAG
Found at i:73347462 original size:30 final size:30
Alignment explanation
Indices: 73347428--73347508 Score: 119
Period size: 30 Copynumber: 2.7 Consensus size: 30
73347418 TCATCATTAT
73347428 CATTATCTTCATCTCCATCTTCACCTCCAG
1 CATTATCTTCATCTCCATCTTCACCTCCAG
* *
73347458 CATTATCTTCATTTCCATCTTCACCTCTAG
1 CATTATCTTCATCTCCATCTTCACCTCCAG
*
73347488 CTTTATCTTCATC-CTCATCTT
1 CATTATCTTCATCTC-CATCTT
73347509 GTTTTTCCGT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 1 0.02
30 45 0.98
ACGTcount: A:0.19, C:0.36, G:0.02, T:0.43
Consensus pattern (30 bp):
CATTATCTTCATCTCCATCTTCACCTCCAG
Found at i:73351522 original size:11 final size:11
Alignment explanation
Indices: 73351506--73351537 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
73351496 TAACGGTAAA
73351506 AGACCATGGTT
1 AGACCATGGTT
73351517 AGACCATGGTT
1 AGACCATGGTT
73351528 AGACCATGGT
1 AGACCATGGT
73351538 AATGTGCTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (11 bp):
AGACCATGGTT
Found at i:73351683 original size:51 final size:51
Alignment explanation
Indices: 73351602--73351791 Score: 303
Period size: 51 Copynumber: 3.7 Consensus size: 51
73351592 ATTGTGCTAA
73351602 GTGAA-ATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTT
1 GTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTT
* *
73351652 GTGACTATAATAGCTTTGAACACAAGTGTGGTACTATGTGAAGGCCACTTT
1 GTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTT
* *
73351703 TTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGTCCACTTT
1 GTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTT
* *
73351754 GTGAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATG
1 GTGAATATAATAGCTTTGGAC-ACAAGTGTGGTACTATG
73351792 ACACCCTTAA
Statistics
Matches: 129, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
50 5 0.04
51 124 0.96
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (51 bp):
GTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTT
Found at i:73363280 original size:46 final size:45
Alignment explanation
Indices: 73363213--73363379 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 45
73363203 CGCCCCTAAG
*
73363213 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-TTTGCATCCATAAA
* *
73363259 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-CT--TTGCATCCATAAA
* * * * *
73363306 CGAACTCGGGCTCAACTCAACGAGTTCGGACATTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCTTTGCATCCATAAA
73363351 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
73363380 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 2 0.02
45 27 0.27
46 28 0.28
47 28 0.28
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCTTTGCATCCATAAA
Found at i:73363372 original size:92 final size:93
Alignment explanation
Indices: 73363214--73363383 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
73363204 GCCCCTAAGT
* *
73363214 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATTGCATCCATAAATGAACTCGGACTCAACTCAA
73363279 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
73363307 GAACTCGGGCTCAACTCAACGAGTTCGGAC-ATTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATTGCATCCATAAATGAACTCGGACTCAACTCAA
73363371 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73363384 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 45 0.62
93 27 0.38
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATTGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73370542 original size:19 final size:20
Alignment explanation
Indices: 73370518--73370555 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73370508 GGTACCACCA
73370518 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
73370537 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
73370556 ACTACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:73370939 original size:46 final size:46
Alignment explanation
Indices: 73370780--73370952 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
73370770 AACCCGCCCC
* *** *
73370780 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGGGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * *
73370826 TAAATGAACTCGGACTCAACTAAACGAGTTCAGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC-ATTTGCATCCA
* * *
73370874 TCA-CGAACTCGGAATCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
73370919 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73370953 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 2 0.02
46 57 0.56
47 25 0.25
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:73370945 original size:93 final size:93
Alignment explanation
Indices: 73370785--73370955 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
73370775 GCCCCTAAGT
* ***
73370785 GAACTCGGACTCAACTCAACGAGCTCGGGGGTTCGCATCCATAAATGAACTCGGACTCAACTAAA
1 GAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTAAA
73370850 CGAGTTCAGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * * *
73370878 GAACTCGGAATCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTAAA
*
73370943 CGAGTTCGGATGC
66 CGAGTTCAGATGC
73370956 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTAAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:73385443 original size:11 final size:11
Alignment explanation
Indices: 73385427--73385451 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73385417 ATGTTCAAAA
73385427 TTAGATTTAGT
1 TTAGATTTAGT
73385438 TTAGATTTAGT
1 TTAGATTTAGT
73385449 TTA
1 TTA
73385452 TGGGCATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (11 bp):
TTAGATTTAGT
Found at i:73387289 original size:13 final size:14
Alignment explanation
Indices: 73387250--73387290 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
73387240 AACATATATA
*
73387250 ACTATACCAAAATG
1 ACTATACTAAAATG
73387264 ACTATACTAAAATG
1 ACTATACTAAAATG
73387278 A-TCATA-TAAAATG
1 ACT-ATACTAAAATG
73387291 CAATCTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 8 0.32
14 17 0.68
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.27
Consensus pattern (14 bp):
ACTATACTAAAATG
Found at i:73421599 original size:28 final size:28
Alignment explanation
Indices: 73421555--73421612 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
73421545 AACATGAAAT
73421555 AATTAAATAAAACTAATAATA-AAAATGA
1 AATTAAATAAAACTAATAATAGAAAA-GA
* *
73421583 AATTAAAGT-AAAGTAATTATAGAAAAGA
1 AATTAAA-TAAAACTAATAATAGAAAAGA
73421611 AA
1 AA
73421613 AATAGAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.24
Consensus pattern (28 bp):
AATTAAATAAAACTAATAATAGAAAAGA
Found at i:73434492 original size:44 final size:44
Alignment explanation
Indices: 73434439--73434526 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
73434429 TTCGACGAGC
*
73434439 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTTTAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTTCAGAT
*
73434483 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAATTTCAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTTCAGAT
73434527 ATTATCTCCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (44 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTTCAGAT
Found at i:73434842 original size:89 final size:89
Alignment explanation
Indices: 73434749--73435136 Score: 699
Period size: 89 Copynumber: 4.4 Consensus size: 89
73434739 AAATGGCGAG
* * *
73434749 TCTTATCTCTATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTT-TGAGGTAGC
1 TCTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCT-TTCTGAGGTAGC
73434813 -AAGAGAGCAGACTAAAAATTACAGA
65 AAAGA-AGCAGACTAAAAATTACAGA
73434838 TCTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCA
73434903 AAGAAGCAGACTAAAAATTACAGA
66 AAGAAGCAGACTAAAAATTACAGA
73434927 TCTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCA
73434992 AAGAAGCAGACTAAAAATTACAGA
66 AAGAAGCAGACTAAAAATTACAGA
73435016 TCTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCA
73435081 AAGAAGCAGACTAAAAATTACAGA
66 AAGAAGCAGACTAAAAATTACAGA
* *
73435105 TCTTATCTCCATGTATCAGCTATGGAACAGAT
1 TCTTATCTCCATGTATCGGCTATGGATCAGAT
73435137 CAAAAAGGGC
Statistics
Matches: 292, Mismatches: 5, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
88 2 0.01
89 286 0.98
90 4 0.01
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.29
Consensus pattern (89 bp):
TCTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCA
AAGAAGCAGACTAAAAATTACAGA
Found at i:73435201 original size:178 final size:176
Alignment explanation
Indices: 73434839--73435381 Score: 499
Period size: 178 Copynumber: 3.1 Consensus size: 176
73434829 AATTACAGAT
73434839 CTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAA
1 CTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAA
* *** **
73434904 AGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTATGGATCAGAT-TTTAGCCAC
66 AGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATC-GCTATGGAACAGATCAAAAG-GGC
* * * * * * * * *** *** **
73434968 CAGCCTTATCTTTC-TG-AGGTAGCAAAGAAGCAGACTAAAAATTACAGAT
129 GAGTCTTATC-TCCATGTA-TTAGCTATGGAGTAGA-TTTTAGCCACAGGC
73435017 CTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAA
1 CTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAA
73435082 AGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCAGCTATGGAACAGATCAAAAAGGGC
66 AGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATC-GCTATGGAACAGATC-AAAAGGGC
* *
73435147 GAGTCTTATCTCCATGTATTGGCTATGGAGTAGATTTTAGCCACTGGC
129 GAGTCTTATCTCCATGTATTAGCTATGGAGTAGATTTTAGCCACAGGC
** * * * * ** ** * *
73435195 CTTATCTCTTTG-AGGT-AGC-AAGAGAGCAGGTTGAAGATACAAGTCTTATC-TTCTTGAGGTA
1 CTTATCTCCATGTA--TCGGCTATG-GATCAGATTTTAGCCACCAGCCTTATCTTTC-TGAGGTA
* * * *
73435256 GCAAGGAAGCAGAC-AGAAAATTACAGATTTTATCTCCATGTATCGTCTATGGAGCAAATCGAAA
62 GCAAAGAAGCAGACTA-AAAATTACAGATCTTATCTCCATGTATCG-CTATGGAACAGATC-AAA
* * * * *
73435320 ATGGTGAGTCTTATCTCCATGTATCAACTATGGAGTAGATTTTAGCCACCGGC
124 AGGGCGAGTCTTATCTCCATGTATTAGCTATGGAGTAGATTTTAGCCACAGGC
73435373 CTTATCTCC
1 CTTATCTCC
73435382 CTGAAGTAGC
Statistics
Matches: 306, Mismatches: 49, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
177 8 0.03
178 273 0.89
179 22 0.07
180 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (176 bp):
CTTATCTCCATGTATCGGCTATGGATCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAA
AGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGCTATGGAACAGATCAAAAGGGCGA
GTCTTATCTCCATGTATTAGCTATGGAGTAGATTTTAGCCACAGGC
Found at i:73435393 original size:178 final size:178
Alignment explanation
Indices: 73435061--73435465 Score: 582
Period size: 178 Copynumber: 2.3 Consensus size: 178
73435051 AGCCACCAGC
*
73435061 CTTATCTT-TCTGAGGTAGCAAAGAAGCAGACTA-AAAATTACAGATCTTATCTCCATGTATCAG
1 CTTATCTTCT-TGAGGTAGCAAGGAAGCAGAC-AGAAAATTACAGATCTTATCTCCATGTATCAG
* ***
73435124 CTATGGAACAGATCAAAAAGGGCGAGTCTTATCTCCATGTATTGGCTATGGAGTAGATTTTAGCC
64 CTATGGAACAAATCAAAAAGGGCGAGTCTTATCTCCATGTATCAACTATGGAGTAGATTTTAGCC
* ** * *
73435189 ACTGGCCTTATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGT
129 ACCGGCCTTATCTCCCTGAAGTAGCAAGAGAGCAGGTCGAAGATACAAGT
*
73435239 CTTATCTTCTTGAGGTAGCAAGGAAGCAGACAGAAAATTACAGATTTTATCTCCATGTATC-GTC
1 CTTATCTTCTTGAGGTAGCAAGGAAGCAGACAGAAAATTACAGATCTTATCTCCATGTATCAG-C
* * * *
73435303 TATGGAGCAAATCGAAAATGGTGAGTCTTATCTCCATGTATCAACTATGGAGTAGATTTTAGCCA
65 TATGGAACAAATCAAAAAGGGCGAGTCTTATCTCCATGTATCAACTATGGAGTAGATTTTAGCCA
73435368 CCGGCCTTATCTCCCTGAAGTAGCAAGAGAGCAGGTCGAAGATACAAGT
130 CCGGCCTTATCTCCCTGAAGTAGCAAGAGAGCAGGTCGAAGATACAAGT
* * * * *
73435417 CTTATCTTCCTCAGGTAGCAAGGAAGTAGACTGAAAATTTCAGATCTTA
1 CTTATCTTCTTGAGGTAGCAAGGAAGCAGACAGAAAATTACAGATCTTA
73435466 CCTCTCTAAG
Statistics
Matches: 203, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
177 2 0.01
178 200 0.99
179 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (178 bp):
CTTATCTTCTTGAGGTAGCAAGGAAGCAGACAGAAAATTACAGATCTTATCTCCATGTATCAGCT
ATGGAACAAATCAAAAAGGGCGAGTCTTATCTCCATGTATCAACTATGGAGTAGATTTTAGCCAC
CGGCCTTATCTCCCTGAAGTAGCAAGAGAGCAGGTCGAAGATACAAGT
Found at i:73435539 original size:44 final size:44
Alignment explanation
Indices: 73435448--73435613 Score: 151
Period size: 44 Copynumber: 3.8 Consensus size: 44
73435438 GGAAGTAGAC
* * * *
73435448 TGAAAATTTCAGATCTTACCTCTCTAAGCAGTAGGGTAACA-AGT
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGGGAAACAGA-T
* *
73435492 TGAAAATTACAGATCTTATCTCCATAAGCAGTAGCGG-AGCAGAT
1 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAG-GGAAACAGAT
*** * * **
73435536 TGAAAACCGCA-AGTCTTATCCCCCTTAGCAGTAGGGAAACAGGC
1 TGAAAATTACAGA-TCTTATCTCCCTAAGCAGTAGGGAAACAGAT
73435580 T-AGAAATTACAGATCTTATCTCCCTAAGCAGTAG
1 TGA-AAATTACAGATCTTATCTCCCTAAGCAGTAG
73435614 TGGAGCAGAT
Statistics
Matches: 97, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
43 4 0.04
44 89 0.92
45 4 0.04
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (44 bp):
TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGGGAAACAGAT
Found at i:73435808 original size:88 final size:88
Alignment explanation
Indices: 73435471--73435805 Score: 440
Period size: 88 Copynumber: 3.8 Consensus size: 88
73435461 TCTTACCTCT
* * * *
73435471 CTAAGCAGTAGGGTAACAAGTTGAAAATTACAGATCTTATCTCCATAAGCAGTAGCGGAGCAGAT
1 CTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * * ** *
73435536 TGAAAACCGCAAGTCTTATCCCC
66 CGAAGACGGTGAGTCTTAACCCC
* *
73435559 CTTAGCAGTAGGGAAACAGGCT-AGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CTAAGCAGTAGGGTAACAGGCTGA-AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
*
73435623 TCAAAGACGGTGAGTCTTAACCCAC
65 TCGAAGACGGTGAGTCTTAACCC-C
* * * * *
73435648 C-AAGCAGTAGGGTAATAGGCTGGAAATTACAGATCTTATCTCCTTAAGTAGTAGTGGAGTAGAT
1 CTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* *
73435712 CGAAGATGGTGAGCCTTAACCCC
66 CGAAGACGGTGAGTCTTAACCCC
* *
73435735 CTAAGCAGTAGGGTAACAGGCTGAAAATTACAAATCTTATCTCCCTAAGCAATAGTGGAGCAGAT
1 CTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
73435800 CGAAGA
66 CGAAGA
73435806 TGGCGAATCT
Statistics
Matches: 213, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
87 3 0.01
88 208 0.98
89 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (88 bp):
CTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
CGAAGACGGTGAGTCTTAACCCC
Found at i:73438636 original size:19 final size:19
Alignment explanation
Indices: 73438604--73438650 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
73438594 ACTTGGGTTG
* *
73438604 AGAATTGGCCAAATGGGCC
1 AGAATGGGCTAAATGGGCC
73438623 AGAATGGGCTAAATGGGCC
1 AGAATGGGCTAAATGGGCC
*
73438642 TG-ATGGGCT
1 AGAATGGGCT
73438651 GTTGGGCCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 7 0.28
19 18 0.72
ACGTcount: A:0.28, C:0.17, G:0.36, T:0.19
Consensus pattern (19 bp):
AGAATGGGCTAAATGGGCC
Found at i:73438766 original size:29 final size:29
Alignment explanation
Indices: 73438721--73438806 Score: 102
Period size: 30 Copynumber: 3.0 Consensus size: 29
73438711 GAGCATAAGT
*
73438721 ATAAA-GTGATTTAGGCCTAATGGGCCAC
1 ATAAATGTGATTTGGGCCTAATGGGCCAC
* *
73438749 ATAAATGTGATTTGGGCCTAAAGGGGCCAT
1 ATAAATGTGATTTGGGCCT-AATGGGCCAC
* * *
73438779 ATGAATGTGAGTTGGGCCTAGTGGGCCA
1 ATAAATGTGATTTGGGCCTAATGGGCCA
73438807 TAAGAATATG
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
28 5 0.10
29 19 0.39
30 25 0.51
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
ATAAATGTGATTTGGGCCTAATGGGCCAC
Found at i:73438823 original size:29 final size:29
Alignment explanation
Indices: 73438734--73438857 Score: 101
Period size: 29 Copynumber: 4.3 Consensus size: 29
73438724 AAGTGATTTA
* * * * *
73438734 GGCCTAATGGGCCACATAAATGTGATTTG
1 GGCCTAGTGGGCCATATGAATATGAATTG
* *
73438763 GGCCTAAAG-GGGCCATATGAATGTGAGTTG
1 GGCCT--AGTGGGCCATATGAATATGAATTG
* *
73438793 GGCCTAGTGGGCCATAAGAATATGAACTG
1 GGCCTAGTGGGCCATATGAATATGAATTG
* *
73438822 GG-CTAGATGGGTCATATGAATAAG-ATTG
1 GGCCTAG-TGGGCCATATGAATATGAATTG
73438850 GGCCTAGT
1 GGCCTAGT
73438858 ATATGATGAC
Statistics
Matches: 78, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
28 12 0.15
29 42 0.54
30 23 0.29
31 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (29 bp):
GGCCTAGTGGGCCATATGAATATGAATTG
Found at i:73446497 original size:46 final size:46
Alignment explanation
Indices: 73446444--73446534 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
73446434 TATATATACA
** * *
73446444 CATCTCATACATGTCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
73446490 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
73446535 ATACACATCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:73447638 original size:47 final size:47
Alignment explanation
Indices: 73446514--73447607 Score: 1949
Period size: 47 Copynumber: 23.3 Consensus size: 47
73446504 TTCGCATTAA
* ** *
73446514 CCATTCGGCTTTCCCACATATATACA--CATCCACGTTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGC-T-CACATTCATCACATTGG
* * * * *
73446561 CCATTCTGCCTTATCACATGTATGCATGTTCACATTTATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
* * * * *
73446608 CCATTCGGCCTTATCTCATATATGCATGTTCATATTCTTCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
* * *
73446655 CCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73446702 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73446749 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73446796 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73446843 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73446890 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73446937 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73446984 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447031 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447078 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447125 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447172 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447219 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447266 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447313 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447360 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447407 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447454 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447501 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
* * * * * *
73447548 CCATTCGGTCTTATCACACAAATGCATGTTCACATTCATCACATTTG
1 CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
73447595 CCATTCGGCCTTA
1 CCATTCGGCCTTA
73447608 GCTCATGTAT
Statistics
Matches: 1016, Mismatches: 29, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
47 1015 1.00
48 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGG
Found at i:73458909 original size:39 final size:40
Alignment explanation
Indices: 73458808--73458909 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 40
73458798 TATTCGAATG
* *
73458808 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTGACT
*
73458848 AGATCCGGGCTAAGA-CCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAA-ATCCCGAAGGCATTTGTGCGAG-TGACT
73458888 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGG
73458910 TACTTGGGTT
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
38 1 0.02
39 14 0.25
40 38 0.69
41 2 0.04
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTGACT
Found at i:73459065 original size:116 final size:116
Alignment explanation
Indices: 73458861--73459094 Score: 468
Period size: 116 Copynumber: 2.0 Consensus size: 116
73458851 TCCGGGCTAA
73458861 GACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGGTACTTGGGTTTGGAAG
1 GACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGGTACTTGGGTTTGGAAG
73458926 TGAGCGACCTTGCTGTAATAATTTCAATTAATACGCTCATAAAATCCAAAC
66 TGAGCGACCTTGCTGTAATAATTTCAATTAATACGCTCATAAAATCCAAAC
73458977 GACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGGTACTTGGGTTTGGAAG
1 GACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGGTACTTGGGTTTGGAAG
73459042 TGAGCGACCTTGCTGTAATAATTTCAATTAATACGCTCATAAAATCCAAAC
66 TGAGCGACCTTGCTGTAATAATTTCAATTAATACGCTCATAAAATCCAAAC
73459093 GA
1 GA
73459095 TAAGGTATGT
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
116 118 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (116 bp):
GACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGGTACTTGGGTTTGGAAG
TGAGCGACCTTGCTGTAATAATTTCAATTAATACGCTCATAAAATCCAAAC
Found at i:73462671 original size:43 final size:43
Alignment explanation
Indices: 73462623--73462729 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
73462613 TACCCCATAT
* ** * * *
73462623 ATGGTCTTACATGTTATCACATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGAAATCACATAACGAAGCCAATCTCCCAGAC
*
73462666 ATGGTCTTACACGAAATCATATAACGAAGCCAATCTCCCAGAC
1 ATGGTCTTACACGAAATCACATAACGAAGCCAATCTCCCAGAC
73462709 ATGGTCTTACACGTAAA-CACA
1 ATGGTCTTACACG-AAATCACA
73462730 ATACAATACA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 52 0.95
44 3 0.05
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCACATAACGAAGCCAATCTCCCAGAC
Found at i:73462765 original size:48 final size:44
Alignment explanation
Indices: 73462649--73462765 Score: 130
Period size: 43 Copynumber: 2.6 Consensus size: 44
73462639 TCACATATCG
* *
73462649 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATAACGA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAACATAAAACGA
*
73462693 A-GCCAATCTCCCAGACATGGTCTTACACGTAAACACAATACAATAC-A
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAA-AC-ATA-AA-ACGA
**
73462740 ATGCCAATGTCCTGGACATGGTCTTA
1 ATGCCAATGTCCCAGACATGGTCTTA
73462766 TATAACATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
43 27 0.44
44 4 0.07
45 1 0.02
46 3 0.05
47 3 0.05
48 23 0.38
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.23
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAAACATAAAACGA
Found at i:73468471 original size:21 final size:20
Alignment explanation
Indices: 73468428--73468471 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
73468418 ATTTCCCACG
* *
73468428 TTGGCCCATTTTCTCTGTTT
1 TTGGCCCATTTTCGCTCTTT
*
73468448 TTGGCTCATTTCTCGCTCTTT
1 TTGGCCCATTT-TCGCTCTTT
73468469 TTG
1 TTG
73468472 CCCTCCTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.05, C:0.25, G:0.16, T:0.55
Consensus pattern (20 bp):
TTGGCCCATTTTCGCTCTTT
Found at i:73469501 original size:21 final size:21
Alignment explanation
Indices: 73469464--73469503 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
73469454 GCCTTTATCA
*
73469464 TCTTGACATATCAAATCAACG
1 TCTTGACATAGCAAATCAACG
73469485 TCTTGACAT-GCATAATCAA
1 TCTTGACATAGCA-AATCAA
73469504 GCAATTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (21 bp):
TCTTGACATAGCAAATCAACG
Found at i:73477724 original size:71 final size:70
Alignment explanation
Indices: 73477590--73477719 Score: 176
Period size: 71 Copynumber: 1.9 Consensus size: 70
73477580 AGCCAATTTA
* * *
73477590 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATT
73477655 TATCTC
65 TATCTC
* *
73477661 TCTCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC
73477720 TACATAGTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
68 22 0.42
70 2 0.04
71 29 0.55
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (70 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATTT
ATCTC
Done.