Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: At_chr10 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 95480121 ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31 Warning! 2980117 characters in sequence are not A, C, G, or T File 222 of 284 Found at i:73932224 original size:18 final size:19 Alignment explanation
Indices: 73932170--73932227 Score: 66 Period size: 19 Copynumber: 3.1 Consensus size: 19 73932160 AAATTACAAA * 73932170 AAAAATTTAAAATAATTT-T 1 AAAAATTCAAAAT-ATTTAT 73932189 CAAAAATTCAAAATATTTAT 1 -AAAAATTCAAAATATTTAT * 73932209 AAAAATTCCAAA-ATTTAT 1 AAAAATTCAAAATATTTAT 73932227 A 1 A 73932228 TTTTTTAAAA Statistics Matches: 35, Mismatches: 2, Indels: 4 0.85 0.05 0.10 Matches are distributed among these distances: 18 7 0.20 19 15 0.43 20 13 0.37 ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36 Consensus pattern (19 bp): AAAAATTCAAAATATTTAT Found at i:73939201 original size:39 final size:40 Alignment explanation
Indices: 73939123--73939261 Score: 221 Period size: 39 Copynumber: 3.5 Consensus size: 40 73939113 TTCGGATGAC 73939123 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT 1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT 73939163 ATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACTAT 1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT * * 73939202 ATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTG-CTAT 1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT * 73939242 ATCC-GGCTAAATCCCGAAGG 1 ATCCGGGCTAAGTCCCGAAGG 73939262 TACTTGGGTT Statistics Matches: 93, Mismatches: 4, Indels: 5 0.91 0.04 0.05 Matches are distributed among these distances: 39 52 0.56 40 39 0.42 41 2 0.02 ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26 Consensus pattern (40 bp): ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT Found at i:73940839 original size:16 final size:16 Alignment explanation
Indices: 73940820--73940858 Score: 78 Period size: 16 Copynumber: 2.4 Consensus size: 16 73940810 CACTGGCATA 73940820 AAGCCTGCTAGGCAAT 1 AAGCCTGCTAGGCAAT 73940836 AAGCCTGCTAGGCAAT 1 AAGCCTGCTAGGCAAT 73940852 AAGCCTG 1 AAGCCTG 73940859 ATATCATATA Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 23 1.00 ACGTcount: A:0.31, C:0.26, G:0.26, T:0.18 Consensus pattern (16 bp): AAGCCTGCTAGGCAAT Found at i:73940844 original size:57 final size:58 Alignment explanation
Indices: 73940780--73940900 Score: 176 Period size: 58 Copynumber: 2.1 Consensus size: 58 73940770 ACTGACACAG * * 73940780 AGCCTGCTAGGTAATAAACCTGAT-TCA-ATACACTGGCAT-AAAGCCTGCTAGGCAATA 1 AGCCTGCTAGGCAATAAACCTGATATCATATAC-C-AGCATCAAAGCCTGCTAGGCAATA * 73940837 AGCCTGCTAGGCAATAAGCCTGATATCATATACCAGCATCAAAGCCTGCTAGGCAATA 1 AGCCTGCTAGGCAATAAACCTGATATCATATACCAGCATCAAAGCCTGCTAGGCAATA 73940895 AGCCTG 1 AGCCTG 73940901 ATATATCACT Statistics Matches: 58, Mismatches: 3, Indels: 5 0.88 0.05 0.08 Matches are distributed among these distances: 57 26 0.45 58 28 0.48 59 4 0.07 ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21 Consensus pattern (58 bp): AGCCTGCTAGGCAATAAACCTGATATCATATACCAGCATCAAAGCCTGCTAGGCAATA Found at i:73947437 original size:39 final size:39 Alignment explanation
Indices: 73947383--73947459 Score: 145 Period size: 39 Copynumber: 2.0 Consensus size: 39 73947373 TGAGACTAGT 73947383 GTTGCAAATTTTGCGGGATAAGCAGTTATATGCTAAGTC 1 GTTGCAAATTTTGCGGGATAAGCAGTTATATGCTAAGTC * 73947422 GTTGCAAATTTTGCGGTATAAGCAGTTATATGCTAAGT 1 GTTGCAAATTTTGCGGGATAAGCAGTTATATGCTAAGT 73947460 TCAGTAAGTG Statistics Matches: 37, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 39 37 1.00 ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35 Consensus pattern (39 bp): GTTGCAAATTTTGCGGGATAAGCAGTTATATGCTAAGTC Found at i:73951390 original size:39 final size:40 Alignment explanation
Indices: 73951287--73951471 Score: 200 Period size: 40 Copynumber: 4.7 Consensus size: 40 73951277 TTGAATGATG * * * 73951287 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT * * 73951326 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT 1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT * * 73951367 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT * * 73951406 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT * * 73951445 AACCGGGCTATGTCCCGAAGGCATTTG 1 -TCCGGGCTAAGTCCCGAAGGCATTTG 73951472 AACGAGTAGC Statistics Matches: 122, Mismatches: 17, Indels: 12 0.81 0.11 0.08 Matches are distributed among these distances: 39 35 0.29 40 77 0.63 41 10 0.08 ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25 Consensus pattern (40 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT Found at i:73951424 original size:79 final size:81 Alignment explanation
Indices: 73951287--73951471 Score: 218 Period size: 79 Copynumber: 2.3 Consensus size: 81 73951277 TTGAATGATG * * 73951287 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT 73951351 TGTGCGAGATACTA-A 66 TGTGCGAGATACTATA * * * * ** 73951366 TTCCGGGCTAAG-CCTGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA 1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA * 73951428 ATTGTGCGAGTTACTATA 64 ATTGTGCGAGATACTATA * * 73951446 ACCGGGCTATGTCCCGAAGGCATTTG 1 TCCGGGCTAAGTCCCGAAGGCATTTG 73951472 AACGAGTAGC Statistics Matches: 89, Mismatches: 12, Indels: 8 0.82 0.11 0.07 Matches are distributed among these distances: 78 1 0.01 79 56 0.63 80 32 0.36 ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25 Consensus pattern (81 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT TGTGCGAGATACTATA Found at i:73951493 original size:79 final size:79 Alignment explanation
Indices: 73951340--73951494 Score: 190 Period size: 79 Copynumber: 2.0 Consensus size: 79 73951330 GGACTAAGAT * * * ** 73951340 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTTGTGCGAGTTACTAA 1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA 73951405 ATCCGGGTTAAGTC 66 ATCCGGGTTAAGTC * * 73951419 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC 1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C * 73951482 TATATCC-GGTTAA 63 TAAATCCGGGTTAA 73951495 ATTCCGAATG Statistics Matches: 65, Mismatches: 8, Indels: 6 0.82 0.10 0.08 Matches are distributed among these distances: 78 2 0.03 79 39 0.60 80 24 0.37 ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26 Consensus pattern (79 bp): CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA ATCCGGGTTAAGTC Found at i:73953727 original size:110 final size:110 Alignment explanation
Indices: 73953534--73953754 Score: 424 Period size: 110 Copynumber: 2.0 Consensus size: 110 73953524 CGGAAGGAAT 73953534 TTCTTGAGCTTAAGCAAGGTTCCATGTCGGTTACTGATTACGAGCAAAAATTTGTTAGACGTAGC 1 TTCTTGAGCTTAAGCAAGGTTCCATGTCGGTTACTGATTACGAGCAAAAATTTGTTAGACGTAGC 73953599 AAATACGCTCGGGAATGTGTTTCGTCCGAGGCTATCATGTGTAAA 66 AAATACGCTCGGGAATGTGTTTCGTCCGAGGCTATCATGTGTAAA * * 73953644 TTCTTGAGCTTAAGCAAGGTTCCATGTCGGTTACTGATTACGAGCGAAAATTTGTTAGACTTAGC 1 TTCTTGAGCTTAAGCAAGGTTCCATGTCGGTTACTGATTACGAGCAAAAATTTGTTAGACGTAGC 73953709 AAATACGCTCGGGAATGTGTTTCGTCCGAGGCTATCATGTGTAAA 66 AAATACGCTCGGGAATGTGTTTCGTCCGAGGCTATCATGTGTAAA 73953754 T 1 T 73953755 GCTTCGAGGA Statistics Matches: 109, Mismatches: 2, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 110 109 1.00 ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32 Consensus pattern (110 bp): TTCTTGAGCTTAAGCAAGGTTCCATGTCGGTTACTGATTACGAGCAAAAATTTGTTAGACGTAGC AAATACGCTCGGGAATGTGTTTCGTCCGAGGCTATCATGTGTAAA Found at i:73953945 original size:41 final size:41 Alignment explanation
Indices: 73953899--73953980 Score: 155 Period size: 41 Copynumber: 2.0 Consensus size: 41 73953889 ACTGGAGAGT 73953899 TTCGTAAAAGATCTTCGAGAAAGTCTCTTCAACAGGCATCA 1 TTCGTAAAAGATCTTCGAGAAAGTCTCTTCAACAGGCATCA * 73953940 TTCGTAAAAGATCTTCGGGAAAGTCTCTTCAACAGGCATCA 1 TTCGTAAAAGATCTTCGAGAAAGTCTCTTCAACAGGCATCA 73953981 AAGAAATTTC Statistics Matches: 40, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 41 40 1.00 ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27 Consensus pattern (41 bp): TTCGTAAAAGATCTTCGAGAAAGTCTCTTCAACAGGCATCA Found at i:73959530 original size:79 final size:81 Alignment explanation
Indices: 73959394--73959578 Score: 236 Period size: 79 Copynumber: 2.3 Consensus size: 81 73959384 TTGAATGATG * 73959394 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT 73959458 TGTGCGAGATACTA-A 66 TGTGCGAGATACTATA * * * ** 73959473 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA 1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA * 73959535 TTTGTGCGAGTTACTATA 64 TTTGTGCGAGATACTATA * * 73959553 ACCGGGCTATGTCCCGAAGGCATTTG 1 TCCGGGCTAAGTCCCGAAGGCATTTG 73959579 AACGAGTAGC Statistics Matches: 92, Mismatches: 9, Indels: 8 0.84 0.08 0.07 Matches are distributed among these distances: 78 1 0.01 79 58 0.63 80 33 0.36 ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25 Consensus pattern (81 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT TGTGCGAGATACTATA Found at i:73959592 original size:40 final size:40 Alignment explanation
Indices: 73959395--73959578 Score: 216 Period size: 40 Copynumber: 4.6 Consensus size: 40 73959385 TGAATGATGT * * * * 73959395 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA * * * 73959435 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT 1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A 73959475 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA * 73959513 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA 1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA * 73959554 CCGGGCTATGTCCCGAAGGCATTTG 1 CCGGGCTAAGTCCCGAAGGCATTTG 73959579 AACGAGTAGC Statistics Matches: 126, Mismatches: 11, Indels: 14 0.83 0.07 0.09 Matches are distributed among these distances: 39 35 0.28 40 81 0.64 41 10 0.08 ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA Found at i:73959600 original size:79 final size:79 Alignment explanation
Indices: 73959447--73959611 Score: 210 Period size: 79 Copynumber: 2.1 Consensus size: 79 73959437 GGACTAAGAT * ** 73959447 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA 1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA * 73959512 ATCCGGGTTAAGTC 66 ATCCGGGTTAAATC * * 73959526 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC 1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C * * 73959589 TATATCC-GGTTAAATT 63 TAAATCCGGGTTAAATC 73959605 CCGAAGG 1 CCGAAGG 73959612 TACGTGATTT Statistics Matches: 75, Mismatches: 8, Indels: 6 0.84 0.09 0.07 Matches are distributed among these distances: 78 2 0.03 79 48 0.64 80 25 0.33 ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25 Consensus pattern (79 bp): CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA ATCCGGGTTAAATC Found at i:73962725 original size:91 final size:91 Alignment explanation
Indices: 73962570--73962751 Score: 364 Period size: 91 Copynumber: 2.0 Consensus size: 91 73962560 ATTTCGATAG 73962570 CTCCGTATCGTATGGCACCAACCGAGTTAAAGGAATTGAAAACTCAATTGCAAGAGTTGACGGAT 1 CTCCGTATCGTATGGCACCAACCGAGTTAAAGGAATTGAAAACTCAATTGCAAGAGTTGACGGAT 73962635 AGAGGTTTCGCTCGACAAAGTTTCTT 66 AGAGGTTTCGCTCGACAAAGTTTCTT 73962661 CTCCGTATCGTATGGCACCAACCGAGTTAAAGGAATTGAAAACTCAATTGCAAGAGTTGACGGAT 1 CTCCGTATCGTATGGCACCAACCGAGTTAAAGGAATTGAAAACTCAATTGCAAGAGTTGACGGAT 73962726 AGAGGTTTCGCTCGACAAAGTTTCTT 66 AGAGGTTTCGCTCGACAAAGTTTCTT 73962752 ACCTTGGGGT Statistics Matches: 91, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 91 91 1.00 ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26 Consensus pattern (91 bp): CTCCGTATCGTATGGCACCAACCGAGTTAAAGGAATTGAAAACTCAATTGCAAGAGTTGACGGAT AGAGGTTTCGCTCGACAAAGTTTCTT Found at i:73965028 original size:20 final size:20 Alignment explanation
Indices: 73965003--73965047 Score: 56 Period size: 20 Copynumber: 2.2 Consensus size: 20 73964993 TATCTTAAAC 73965003 CACATAGTTCATATACATTT- 1 CACATAGTTCA-ATACATTTA * * 73965023 CACATATTTCAATTCATTTA 1 CACATAGTTCAATACATTTA 73965043 CACAT 1 CACAT 73965048 GTAGCATATT Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 19 7 0.32 20 15 0.68 ACGTcount: A:0.36, C:0.22, G:0.02, T:0.40 Consensus pattern (20 bp): CACATAGTTCAATACATTTA Found at i:73965341 original size:42 final size:43 Alignment explanation
Indices: 73965243--73965412 Score: 184 Period size: 43 Copynumber: 4.0 Consensus size: 43 73965233 TCAAACAATA * * 73965243 CCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATG 1 CCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCGATG ** 73965286 CC-ACTGTCCCAGACAAGGTCTTACACGAAATCAAATAT-GATG 1 CCAAC-GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATG * * 73965328 CCAACGTACCAGACGTGGTCTTACACGTAAATCATAA-GTCGATG 1 CCAACGTCCCAGACGTGGTCTTACACG-AAATCA-AATATCGATG * * * * * * 73965372 CCAATGTCCCAGATGTGTTCTAACACGAAAACACATATCGA 1 CCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCGA 73965413 ATCCTTTGTC Statistics Matches: 105, Mismatches: 16, Indels: 12 0.79 0.12 0.09 Matches are distributed among these distances: 42 28 0.27 43 49 0.47 44 28 0.27 ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23 Consensus pattern (43 bp): CCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCGATG Found at i:73970345 original size:22 final size:22 Alignment explanation
Indices: 73970318--73970362 Score: 90 Period size: 22 Copynumber: 2.0 Consensus size: 22 73970308 TGAATCTCGT 73970318 ACGTACTTGAGCTATTTAACTC 1 ACGTACTTGAGCTATTTAACTC 73970340 ACGTACTTGAGCTATTTAACTC 1 ACGTACTTGAGCTATTTAACTC 73970362 A 1 A 73970363 TTCACACATT Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 22 23 1.00 ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36 Consensus pattern (22 bp): ACGTACTTGAGCTATTTAACTC Found at i:73977573 original size:61 final size:61 Alignment explanation
Indices: 73977505--73977628 Score: 230 Period size: 61 Copynumber: 2.0 Consensus size: 61 73977495 AAGCAAGAAG * 73977505 AAAAAGAAGAGAGGTGAAATCGACCAAACAACAAAGAAGGAAACCAAAATCCCGAGAGGTC 1 AAAAAGAAGAGAGGTGAAATCGACCAAACAACAAAGAAGGAAACCAAAAACCCGAGAGGTC * 73977566 AAAAAGAAGAGATGTGAAATCGACCAAACAACAAAGAAGGAAACCAAAAACCCGAGAGGTC 1 AAAAAGAAGAGAGGTGAAATCGACCAAACAACAAAGAAGGAAACCAAAAACCCGAGAGGTC 73977627 AA 1 AA 73977629 TTTCAAAATA Statistics Matches: 61, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 61 61 1.00 ACGTcount: A:0.54, C:0.18, G:0.22, T:0.06 Consensus pattern (61 bp): AAAAAGAAGAGAGGTGAAATCGACCAAACAACAAAGAAGGAAACCAAAAACCCGAGAGGTC Found at i:73983279 original size:20 final size:18 Alignment explanation
Indices: 73983254--73983318 Score: 64 Period size: 16 Copynumber: 3.6 Consensus size: 18 73983244 CATGACCACT 73983254 TTTTGGTAGCTTGTCTACAA 1 TTTTGGT-G-TTGTCTACAA 73983274 TTTT-G-GTTGTCTACAA 1 TTTTGGTGTTGTCTACAA 73983290 TTTTGGTGGATTGTCTACAA 1 TTTTGGT-G-TTGTCTACAA * 73983310 -ATTGGTGTT 1 TTTTGGTGTT 73983319 ATTGGTTGGA Statistics Matches: 40, Mismatches: 1, Indels: 11 0.77 0.02 0.21 Matches are distributed among these distances: 16 14 0.35 17 4 0.10 18 1 0.03 19 7 0.17 20 14 0.35 ACGTcount: A:0.18, C:0.11, G:0.23, T:0.48 Consensus pattern (18 bp): TTTTGGTGTTGTCTACAA Found at i:73983285 original size:16 final size:16 Alignment explanation
Indices: 73983264--73983296 Score: 66 Period size: 16 Copynumber: 2.1 Consensus size: 16 73983254 TTTTGGTAGC 73983264 TTGTCTACAATTTTGG 1 TTGTCTACAATTTTGG 73983280 TTGTCTACAATTTTGG 1 TTGTCTACAATTTTGG 73983296 T 1 T 73983297 GGATTGTCTA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 17 1.00 ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52 Consensus pattern (16 bp): TTGTCTACAATTTTGG Found at i:73987187 original size:30 final size:30 Alignment explanation
Indices: 73987152--73987209 Score: 98 Period size: 30 Copynumber: 1.9 Consensus size: 30 73987142 TAGATATAAA * 73987152 GAAAAAGACAAATTTATAATCATAAGATAT 1 GAAAAAGACAAATATATAATCATAAGATAT * 73987182 GAAAAAGATAAATATATAATCATAAGAT 1 GAAAAAGACAAATATATAATCATAAGAT 73987210 GGAAAGAAGT Statistics Matches: 26, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 30 26 1.00 ACGTcount: A:0.59, C:0.05, G:0.10, T:0.26 Consensus pattern (30 bp): GAAAAAGACAAATATATAATCATAAGATAT Found at i:73993164 original size:15 final size:15 Alignment explanation
Indices: 73993132--73993160 Score: 51 Period size: 14 Copynumber: 2.0 Consensus size: 15 73993122 ATATTCTATG 73993132 TTTACTATGTGTGAA 1 TTTACTATGTGTGAA 73993147 TTTA-TATGTGTGAA 1 TTTACTATGTGTGAA 73993161 ATTTTCATGA Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 14 10 0.71 15 4 0.29 ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48 Consensus pattern (15 bp): TTTACTATGTGTGAA Found at i:73993411 original size:23 final size:21 Alignment explanation
Indices: 73993359--73993413 Score: 56 Period size: 23 Copynumber: 2.4 Consensus size: 21 73993349 ATTCATATTA 73993359 TATAATAAAGGTTAAATATGT 1 TATAATAAAGGTTAAATATGT * * 73993380 AATTAAATAATATGTTAATATATGT 1 TA-T-AATAA-AGGTTAA-ATATGT 73993405 TATAATAAA 1 TATAATAAA 73993414 ACATAAAATA Statistics Matches: 27, Mismatches: 3, Indels: 7 0.73 0.08 0.19 Matches are distributed among these distances: 21 1 0.04 22 2 0.07 23 10 0.37 24 7 0.26 25 7 0.26 ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40 Consensus pattern (21 bp): TATAATAAAGGTTAAATATGT Found at i:73994695 original size:24 final size:24 Alignment explanation
Indices: 73994663--73994712 Score: 100 Period size: 24 Copynumber: 2.1 Consensus size: 24 73994653 ATATGTGCAC 73994663 TTGCAAAGCTTATTTGGCTATAGG 1 TTGCAAAGCTTATTTGGCTATAGG 73994687 TTGCAAAGCTTATTTGGCTATAGG 1 TTGCAAAGCTTATTTGGCTATAGG 73994711 TT 1 TT 73994713 TTGTATATGT Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 26 1.00 ACGTcount: A:0.24, C:0.12, G:0.24, T:0.40 Consensus pattern (24 bp): TTGCAAAGCTTATTTGGCTATAGG Found at i:73997539 original size:3 final size:3 Alignment explanation
Indices: 73997499--73997654 Score: 76 Period size: 3 Copynumber: 51.7 Consensus size: 3 73997489 ATTTGTATAA * * * 73997499 ATT ATT ATAT ATT ATAT CTT TTT ATT ATT CATT A-T ATT ATT TTT ATT 1 ATT ATT AT-T ATT AT-T ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT * * * 73997546 -TT ACT A-T ATC ATT -TT ATT ATT AATT ATT ATT ATGT ATA ATT ATAT 1 ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT AT-T ATT ATT AT-T * * * * * 73997591 CTT TTT ATT ATT CATT A-T ATT ATT TTT ATT -TT ACT A-T ATC ATT 1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT 73997634 -TT ATT ATT AATT ATTT ATT AT 1 ATT ATT ATT -ATT A-TT ATT AT 73997655 GTATAATTTT Statistics Matches: 118, Mismatches: 18, Indels: 34 0.69 0.11 0.20 Matches are distributed among these distances: 2 16 0.14 3 77 0.65 4 25 0.21 ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63 Consensus pattern (3 bp): ATT Found at i:73997554 original size:39 final size:39 Alignment explanation
Indices: 73997511--73997652 Score: 177 Period size: 39 Copynumber: 3.7 Consensus size: 39 73997501 TATTATATAT * 73997511 TATATCTTTTTATTATTCATTATATTATTTTTATTTTAC 1 TATATCATTTTATTATTCATTATATTATTTTTATTTTAC * * * * 73997550 TATATCATTTTATTATT-AAT-TATTATTATGTA--TAAT 1 TATATCATTTTATTATTCATTATATTATT-TTTATTTTAC * 73997586 TATATCTTTTTATTATTCATTATATTATTTTTATTTTAC 1 TATATCATTTTATTATTCATTATATTATTTTTATTTTAC * 73997625 TATATCATTTTATTATTAATTAT-TTATT 1 TATATCATTTTATTATTCATTATATTATT 73997653 ATGTATAATT Statistics Matches: 86, Mismatches: 12, Indels: 11 0.79 0.11 0.10 Matches are distributed among these distances: 36 18 0.21 37 12 0.14 38 17 0.20 39 39 0.45 ACGTcount: A:0.30, C:0.06, G:0.01, T:0.64 Consensus pattern (39 bp): TATATCATTTTATTATTCATTATATTATTTTTATTTTAC Found at i:73997594 original size:75 final size:76 Alignment explanation
Indices: 73997499--73997662 Score: 305 Period size: 75 Copynumber: 2.2 Consensus size: 76 73997489 ATTTGTATAA 73997499 ATTAT-TATATATTATATCTTTTTATTATTCATTATATTATTTTTATTTTACTATATCATTTTAT 1 ATTATGTATA-ATTATATCTTTTTATTATTCATTATATTATTTTTATTTTACTATATCATTTTAT 73997563 TATTAATTA-TT 65 TATTAATTATTT 73997574 ATTATGTATAATTATATCTTTTTATTATTCATTATATTATTTTTATTTTACTATATCATTTTATT 1 ATTATGTATAATTATATCTTTTTATTATTCATTATATTATTTTTATTTTACTATATCATTTTATT 73997639 ATTAATTATTT 66 ATTAATTATTT 73997650 ATTATGTATAATT 1 ATTATGTATAATT 73997663 TTAAAAATTT Statistics Matches: 87, Mismatches: 0, Indels: 3 0.97 0.00 0.03 Matches are distributed among these distances: 75 68 0.78 76 19 0.22 ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63 Consensus pattern (76 bp): ATTATGTATAATTATATCTTTTTATTATTCATTATATTATTTTTATTTTACTATATCATTTTATT ATTAATTATTT Found at i:73997640 original size:21 final size:21 Alignment explanation
Indices: 73997586--73997641 Score: 55 Period size: 19 Copynumber: 2.8 Consensus size: 21 73997576 TATGTATAAT * * 73997586 TATATCTTTTTATTA-TTCAT 1 TATATCATTTTATTATTTCAC * * 73997606 TATATTA-TTT-TTATTTTAC 1 TATATCATTTTATTATTTCAC 73997625 TATATCATTTTATTATT 1 TATATCATTTTATTATT 73997642 AATTATTTAT Statistics Matches: 28, Mismatches: 5, Indels: 5 0.74 0.13 0.13 Matches are distributed among these distances: 18 3 0.11 19 12 0.43 20 8 0.29 21 5 0.18 ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66 Consensus pattern (21 bp): TATATCATTTTATTATTTCAC Found at i:73997650 original size:27 final size:26 Alignment explanation
Indices: 73997506--73997649 Score: 99 Period size: 26 Copynumber: 5.6 Consensus size: 26 73997496 TAAATTATTA * 73997506 TATATTA-TATCT-TTTTATTATTCAT 1 TATATTATTAT-TATTTTACTATTCAT * 73997531 TATATTATTTTTATTTTACTATATCA- 1 TATATTATTATTATTTTACTAT-TCAT * * 73997557 T-T-TTATTATTA-ATTATTATT-AT 1 TATATTATTATTATTTTACTATTCAT * 73997579 GTATAATTA-TATCT-TTTTATTATTCAT 1 -TAT-ATTATTAT-TATTTTACTATTCAT * 73997606 TATATTATTTTTATTTTACTATATCAT 1 TATATTATTATTATTTTACTAT-TCAT * 73997633 TTTATTATTAATTATTT 1 TATATTATT-ATTATTT 73997650 ATTATGTATA Statistics Matches: 94, Mismatches: 10, Indels: 27 0.72 0.08 0.21 Matches are distributed among these distances: 21 1 0.01 22 1 0.01 23 7 0.07 24 9 0.10 25 17 0.18 26 36 0.38 27 17 0.18 28 6 0.06 ACGTcount: A:0.30, C:0.06, G:0.01, T:0.64 Consensus pattern (26 bp): TATATTATTATTATTTTACTATTCAT Found at i:74005798 original size:45 final size:46 Alignment explanation
Indices: 74005749--74006155 Score: 260 Period size: 45 Copynumber: 9.1 Consensus size: 46 74005739 GTAGATCACT * 74005749 GATAGCAGATTTGGCATCTCTGTATTAGA-CGGGGAGCAGATCGAA 1 GATAGCAGATTTGGCATCTCTGTATTACATCGGGGAGCAGATCGAA * * * * * * 74005794 GATAGCAGATCTGACAT-TCGTGTGTTTACATC--GAAGTAGATCAAA 1 GATAGCAGATTTGGCATCTC-TGT-ATTACATCGGGGAGCAGATCGAA * * 74005839 GAT-GACAGATTTGGCGTCTCTGTATTAGA-CGGGGAGCAGATCG-A 1 GATAG-CAGATTTGGCATCTCTGTATTACATCGGGGAGCAGATCGAA * * * * * 74005883 GATAGCAAATCTGACAT-TCGTGTGTTTACATC--GAAGCAGATCGAA 1 GATAGCAGATTTGGCATCTC-TGT-ATTACATCGGGGAGCAGATCGAA * * 74005928 GAT-GACAGATTTGGCATCTCTGTATTAGA-CGGGGAGCAGATCGAG 1 GATAG-CAGATTTGGCATCTCTGTATTACATCGGGGAGCAGATCGAA * * * * * * * 74005973 GATAGTAAATTTGACATTTGTGTGTTTACATC--GAAGCAGATCGAA 1 GATAGCAGATTTGGCATCTCTGT-ATTACATCGGGGAGCAGATCGAA * * 74006018 GAT-GACAGATTTGGCATCTCTGTATTAGA-CGGGGAGCAGATCGAG 1 GATAG-CAGATTTGGCATCTCTGTATTACATCGGGGAGCAGATCGAA * * * * * * * 74006063 GATAGTAAATTTGACATTTGTGTGTTTACATC--GAAGCAGATCGAA 1 GATAGCAGATTTGGCATCTCTGT-ATTACATCGGGGAGCAGATCGAA * * * * 74006108 GAT-GATAGATTTGGCGTCTCTGTATTA-AGCGGGGAGCAGATCAAA 1 GATAG-CAGATTTGGCATCTCTGTATTACATCGGGGAGCAGATCGAA 74006153 GAT 1 GAT 74006156 TTCAGCATGG Statistics Matches: 269, Mismatches: 65, Indels: 56 0.69 0.17 0.14 Matches are distributed among these distances: 43 7 0.03 44 46 0.17 45 194 0.72 46 19 0.07 47 3 0.01 ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28 Consensus pattern (46 bp): GATAGCAGATTTGGCATCTCTGTATTACATCGGGGAGCAGATCGAA Found at i:74006025 original size:90 final size:90 Alignment explanation
Indices: 74005754--74006149 Score: 652 Period size: 90 Copynumber: 4.4 Consensus size: 90 74005744 TCACTGATAG * * 74005754 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT 1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAGGATAGCAAATCTGACATTCGTGTGT * * 74005819 TTACATCGAAGTAGATCAAAGATGA 66 TTACATCGAAGCAGATCGAAGATGA * 74005844 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGA-GATAGCAAATCTGACATTCGTGTGT 1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAGGATAGCAAATCTGACATTCGTGTGT 74005908 TTACATCGAAGCAGATCGAAGATGA 66 TTACATCGAAGCAGATCGAAGATGA * * * 74005933 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAGGATAGTAAATTTGACATTTGTGTGT 1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAGGATAGCAAATCTGACATTCGTGTGT 74005998 TTACATCGAAGCAGATCGAAGATGA 66 TTACATCGAAGCAGATCGAAGATGA * * * 74006023 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAGGATAGTAAATTTGACATTTGTGTGT 1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAGGATAGCAAATCTGACATTCGTGTGT 74006088 TTACATCGAAGCAGATCGAAGATGA 66 TTACATCGAAGCAGATCGAAGATGA * * 74006113 TAGATTTGGCGTCTCTGTATTA-AGCGGGGAGCAGATC 1 CAGATTTGGCATCTCTGTATTAGA-CGGGGAGCAGATC 74006150 AAAGATTTCA Statistics Matches: 294, Mismatches: 10, Indels: 4 0.95 0.03 0.01 Matches are distributed among these distances: 89 86 0.29 90 208 0.71 ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28 Consensus pattern (90 bp): CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAGGATAGCAAATCTGACATTCGTGTGT TTACATCGAAGCAGATCGAAGATGA Found at i:74006054 original size:179 final size:180 Alignment explanation
Indices: 74005754--74006155 Score: 655 Period size: 179 Copynumber: 2.2 Consensus size: 180 74005744 TCACTGATAG * 74005754 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT 1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAAATCTGACATTCGTGTGT * * 74005819 TTACATCGAAGTAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGA- 66 TTACATCGAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAG 74005883 GATAGCAAATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGA 131 GATAGCAAATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGA * * * * 74005933 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAGGATAGTAAATTTGACATTTGTGTGT 1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAAATCTGACATTCGTGTGT * 74005998 TTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAG 66 TTACATCGAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAG * * * 74006063 GATAGTAAATTTGACATTTGTGTGTTTACATCGAAGCAGATCGAAGATGA 131 GATAGCAAATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGA * * * 74006113 TAGATTTGGCGTCTCTGTATTA-AGCGGGGAGCAGATCAAAGAT 1 CAGATTTGGCATCTCTGTATTAGA-CGGGGAGCAGATCGAAGAT 74006156 TTCAGCATGG Statistics Matches: 206, Mismatches: 15, Indels: 3 0.92 0.07 0.01 Matches are distributed among these distances: 179 122 0.59 180 84 0.41 ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28 Consensus pattern (180 bp): CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAAATCTGACATTCGTGTGT TTACATCGAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAG GATAGCAAATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGA Found at i:74007735 original size:20 final size:20 Alignment explanation
Indices: 74007712--74007765 Score: 74 Period size: 20 Copynumber: 2.7 Consensus size: 20 74007702 TGTGTAAAAA * 74007712 TTATTATAT-ATTATATCCTT 1 TTATTAT-TCATTATATCATT 74007732 TTATTATTCATTATATCATT 1 TTATTATTCATTATATCATT * 74007752 TTATTATTAATTAT 1 TTATTATTCATTAT 74007766 TTATTATGTA Statistics Matches: 31, Mismatches: 2, Indels: 2 0.89 0.06 0.06 Matches are distributed among these distances: 19 1 0.03 20 30 0.97 ACGTcount: A:0.31, C:0.07, G:0.00, T:0.61 Consensus pattern (20 bp): TTATTATTCATTATATCATT Found at i:74009513 original size:27 final size:27 Alignment explanation
Indices: 74009475--74009539 Score: 80 Period size: 28 Copynumber: 2.4 Consensus size: 27 74009465 TGTCAAAAAA 74009475 TATAATATAATTA-TAAAATAATTAATT 1 TATAATA-AATTATTAAAATAATTAATT * * 74009502 TATAATTAAATTATTAACATATTTAATT 1 TATAA-TAAATTATTAAAATAATTAATT 74009530 T-TAATAAATT 1 TATAATAAATT 74009540 TTATATTAAA Statistics Matches: 34, Mismatches: 2, Indels: 5 0.83 0.05 0.12 Matches are distributed among these distances: 26 6 0.18 27 13 0.38 28 15 0.44 ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48 Consensus pattern (27 bp): TATAATAAATTATTAAAATAATTAATT Found at i:74009551 original size:22 final size:22 Alignment explanation
Indices: 74009520--74009563 Score: 70 Period size: 22 Copynumber: 2.0 Consensus size: 22 74009510 AATTATTAAC * 74009520 ATATTTAATTTTAATAAATTTT 1 ATATTAAATTTTAATAAATTTT * 74009542 ATATTAAATTTTCATAAATTTT 1 ATATTAAATTTTAATAAATTTT 74009564 GATTTATTTT Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 22 20 1.00 ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57 Consensus pattern (22 bp): ATATTAAATTTTAATAAATTTT Found at i:74011815 original size:14 final size:14 Alignment explanation
Indices: 74011796--74011823 Score: 56 Period size: 14 Copynumber: 2.0 Consensus size: 14 74011786 CACATGGCAA 74011796 GAGTTAGTAGAATG 1 GAGTTAGTAGAATG 74011810 GAGTTAGTAGAATG 1 GAGTTAGTAGAATG 74011824 ATTCTTTATG Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 14 1.00 ACGTcount: A:0.36, C:0.00, G:0.36, T:0.29 Consensus pattern (14 bp): GAGTTAGTAGAATG Found at i:74016620 original size:10 final size:10 Alignment explanation
Indices: 74016607--74016631 Score: 50 Period size: 10 Copynumber: 2.5 Consensus size: 10 74016597 TTAAAAGATT 74016607 AAAAAAATGG 1 AAAAAAATGG 74016617 AAAAAAATGG 1 AAAAAAATGG 74016627 AAAAA 1 AAAAA 74016632 TATGTTCATC Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 15 1.00 ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08 Consensus pattern (10 bp): AAAAAAATGG Found at i:74020979 original size:15 final size:15 Alignment explanation
Indices: 74020956--74020989 Score: 59 Period size: 15 Copynumber: 2.3 Consensus size: 15 74020946 TTACTTGTGC * 74020956 AAATTACTTTTCCAT 1 AAATAACTTTTCCAT 74020971 AAATAACTTTTCCAT 1 AAATAACTTTTCCAT 74020986 AAAT 1 AAAT 74020990 TCTGATTGTC Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 15 18 1.00 ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41 Consensus pattern (15 bp): AAATAACTTTTCCAT Found at i:74026661 original size:31 final size:31 Alignment explanation
Indices: 74026614--74026722 Score: 166 Period size: 31 Copynumber: 3.5 Consensus size: 31 74026604 TTTAACGGTT 74026614 ACTGGG-CGAAGCCTTTTCATAAATCAAATC 1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC * 74026644 ACTGGGCCGAAGTCTTTTCATAAATCAAATC 1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC * 74026675 ACTGGGCCGAAGCCTTTTCATAAATCATATC 1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC * ** 74026706 ACTAGGCTAAAGCCTTT 1 ACTGGGCCGAAGCCTTT 74026723 ACTATAAACG Statistics Matches: 72, Mismatches: 6, Indels: 1 0.91 0.08 0.01 Matches are distributed among these distances: 30 6 0.08 31 66 0.92 ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28 Consensus pattern (31 bp): ACTGGGCCGAAGCCTTTTCATAAATCAAATC Found at i:74026896 original size:26 final size:25 Alignment explanation
Indices: 74026835--74026971 Score: 193 Period size: 25 Copynumber: 5.4 Consensus size: 25 74026825 CTCTCCACAT 74026835 AAGCCCTTTTCGGTAAACTGGGGCA 1 AAGCCCTTTTCGGTAAACTGGGGCA ** * 74026860 AAGCCCTTTTCAATAAACTAGGGCA 1 AAGCCCTTTTCGGTAAACTGGGGCA 74026885 TAAGCCCTTTTCGGTAAACTGGGGCA 1 -AAGCCCTTTTCGGTAAACTGGGGCA ** * 74026911 AAGCCCTTTTCAATAAACTAGGGCA 1 AAGCCCTTTTCGGTAAACTGGGGCA 74026936 TAAGCCCTTTTCGGTAAACTGGGGCA 1 -AAGCCCTTTTCGGTAAACTGGGGCA * 74026962 GAGCCCTTTT 1 AAGCCCTTTT 74026972 AGCACTTCCT Statistics Matches: 97, Mismatches: 13, Indels: 4 0.85 0.11 0.04 Matches are distributed among these distances: 25 53 0.55 26 44 0.45 ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26 Consensus pattern (25 bp): AAGCCCTTTTCGGTAAACTGGGGCA Found at i:74026908 original size:51 final size:51 Alignment explanation
Indices: 74026832--74026971 Score: 271 Period size: 51 Copynumber: 2.7 Consensus size: 51 74026822 CTACTCTCCA 74026832 CATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTAGGG 1 CATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTAGGG 74026883 CATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTAGGG 1 CATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTAGGG * 74026934 CATAAGCCCTTTTCGGTAAACTGGGGCAGAGCCCTTTT 1 CATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTT 74026972 AGCACTTCCT Statistics Matches: 88, Mismatches: 1, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 51 88 1.00 ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26 Consensus pattern (51 bp): CATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTAGGG Found at i:74027801 original size:27 final size:26 Alignment explanation
Indices: 74027766--74027853 Score: 79 Period size: 27 Copynumber: 3.3 Consensus size: 26 74027756 GGGCATATTC 74027766 GTCATTTTACCATATAGGGGTATTACA 1 GTCATTTTACC-TATAGGGGTATTACA * * * 74027793 GTCACTTTACCCTACAGGGGCT-TTACG 1 GTCATTTTA-CCTATAGGGG-TATTACA * ** 74027820 GTCTTTTTACCTATTAGGGGTATTTTA 1 GTCATTTTACCTA-TAGGGGTATTACA 74027847 GTCATTT 1 GTCATTT 74027854 CATCCTACAA Statistics Matches: 47, Mismatches: 10, Indels: 8 0.72 0.15 0.12 Matches are distributed among these distances: 26 5 0.11 27 39 0.83 28 3 0.06 ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41 Consensus pattern (26 bp): GTCATTTTACCTATAGGGGTATTACA Found at i:74027914 original size:27 final size:27 Alignment explanation
Indices: 74027861--74028166 Score: 197 Period size: 27 Copynumber: 11.3 Consensus size: 27 74027851 TTTCATCCTA * * * * * 74027861 CAAGGGTGTTTTGGTAAATCTACAAAC 1 CAAGGGTATTTTAGTAATTTTATAAAC * 74027888 CAAGGGTATTTTAGTAATTTTGTAAAC 1 CAAGGGTATTTTAGTAATTTTATAAAC * * * * 74027915 TAATGGTATTTCTA-TAATTTTTAAAAAGT 1 CAAGGGTATTT-TAGTAA-TTTTATAAA-C * * * 74027944 CAAGGGTATTTTGGTAATTTTACAAAT 1 CAAGGGTATTTTAGTAATTTTATAAAC ** * * * 74027971 TGATGGTATTTCAGTAATTTTA-AAAA 1 CAAGGGTATTTTAGTAATTTTATAAAC * ** * 74027997 CTAGTGGTATTTCGGTAATTTTACAAAC 1 CAAG-GGTATTTTAGTAATTTTATAAAC * * * 74028025 TAAGGGTATTTTGGTAATTTTACAAAC 1 CAAGGGTATTTTAGTAATTTTATAAAC * * * * 74028052 CAGGGGTATTTTAGCAATTTTACAGA- 1 CAAGGGTATTTTAGTAATTTTATAAAC * * * * 74028078 CTAGGGTATTTTGGTAATTTTACT-GAT 1 CAAGGGTATTTTAGTAATTTTA-TAAAC * * 74028105 CGAGGGTATTTTGGTAATTTTATAAAC 1 CAAGGGTATTTTAGTAATTTTATAAAC * * 74028132 CAAGGGTATTTTAGTAATTTTGTAAAT 1 CAAGGGTATTTTAGTAATTTTATAAAC * 74028159 CGAGGGTA 1 CAAGGGTA 74028167 AAACGGTAAT Statistics Matches: 223, Mismatches: 47, Indels: 18 0.77 0.16 0.06 Matches are distributed among these distances: 26 25 0.11 27 163 0.73 28 23 0.10 29 12 0.05 ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40 Consensus pattern (27 bp): CAAGGGTATTTTAGTAATTTTATAAAC Found at i:74028005 original size:83 final size:81 Alignment explanation
Indices: 74027892--74028050 Score: 228 Period size: 83 Copynumber: 1.9 Consensus size: 81 74027882 ACAAACCAAG * ** * * 74027892 GGTATTTTAGTAATTTTGTAAACTAATGGTATTTCTATAATTTTTAAAAAGTCAAGGGTATTTTG 1 GGTATTTCAGTAATTTTAAAAACTAATGGTATTTCGATAA-TTTTAAAAACT-AAGGGTATTTTG 74027957 GTAATTTTACAAATTGAT 64 GTAATTTTACAAATTGAT * * * 74027975 GGTATTTCAGTAATTTTAAAAACTAGTGGTATTTCGGTAATTTTACAAACTAAGGGTATTTTGGT 1 GGTATTTCAGTAATTTTAAAAACTAATGGTATTTCGATAATTTTAAAAACTAAGGGTATTTTGGT 74028040 AATTTTACAAA 66 AATTTTACAAA 74028051 CCAGGGGTAT Statistics Matches: 68, Mismatches: 8, Indels: 2 0.87 0.10 0.03 Matches are distributed among these distances: 81 25 0.37 82 9 0.13 83 34 0.50 ACGTcount: A:0.34, C:0.06, G:0.16, T:0.43 Consensus pattern (81 bp): GGTATTTCAGTAATTTTAAAAACTAATGGTATTTCGATAATTTTAAAAACTAAGGGTATTTTGGT AATTTTACAAATTGAT Found at i:74028071 original size:81 final size:81 Alignment explanation
Indices: 74027861--74028152 Score: 336 Period size: 80 Copynumber: 3.6 Consensus size: 81 74027851 TTTCATCCTA * * * ** * 74027861 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAACTAATGGTATTT 1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTAAAAACTAGTGGTATTT ** * 74027926 CTATAATTTTTAAAAAGT 66 CGGTAA-TTTTACAAA-T *** * * 74027944 CAAGGGTATTTTGGTAATTTTACAAATTGATGGTATTTCAGTAATTTTAAAAACTAGTGGTATTT 1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTAAAAACTAGTGGTATTT 74028009 CGGTAATTTTACAAA- 66 CGGTAATTTTACAAAT * * * * 74028024 CTAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACAGACTAG-GGTATT 1 C-AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTAAAAACTAGTGGTATT * ** 74028088 TTGGTAATTTTACTGAT 65 TCGGTAATTTTACAAAT * * 74028105 CGAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTT 1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT 74028153 GTAAATCGAG Statistics Matches: 177, Mismatches: 30, Indels: 7 0.83 0.14 0.03 Matches are distributed among these distances: 80 63 0.36 81 48 0.27 82 8 0.05 83 58 0.33 ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41 Consensus pattern (81 bp): CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTAAAAACTAGTGGTATTT CGGTAATTTTACAAAT Found at i:74028161 original size:54 final size:53 Alignment explanation
Indices: 74027890--74028166 Score: 229 Period size: 54 Copynumber: 5.1 Consensus size: 53 74027880 CTACAAACCA * ** * * 74027890 AGGGTATTTTAGTAATTTTGTAAACTAATGGTATTTCTA-TAATTTTTAAAAAGTCA 1 AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT-TAGTAATTTTT--AAA-TCG * * * * * * * 74027946 AGGGTATTTTGGTAATTTTACAAATTGATGGTATTTCAGTAATTTTAAAAACT 1 AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTTAAATCG * * * * 74027999 AGTGGTATTTCGGTAATTTTACAAACTAAGGGTATTTTGGTAA-TTTTACAAACC 1 AG-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTTA-AATCG * * * * * 74028053 AGGGGTATTTTAGCAATTTTACAGACT-AGGGTATTTTGGTAA-TTTTACTGATCG 1 A-GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTTA--AATCG * * 74028107 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTGTAAATCG 1 AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTT-TAAATCG 74028161 AGGGTA 1 AGGGTA 74028167 AAACGGTAAT Statistics Matches: 181, Mismatches: 32, Indels: 18 0.78 0.14 0.08 Matches are distributed among these distances: 53 47 0.26 54 89 0.49 55 5 0.03 56 40 0.22 ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42 Consensus pattern (53 bp): AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTTAAATCG Found at i:74028215 original size:55 final size:54 Alignment explanation
Indices: 74028145--74028248 Score: 163 Period size: 55 Copynumber: 1.9 Consensus size: 54 74028135 GGGTATTTTA * * * 74028145 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTTGTAAATCGAGGGTAAAATG 1 GTAATTCTATAAATCGAGGGTAAAACGGTAA-TTCTGTAAATCGAGGGTAAAATG * 74028200 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTA 1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA 74028249 CTTTGGTAAT Statistics Matches: 45, Mismatches: 4, Indels: 1 0.90 0.08 0.02 Matches are distributed among these distances: 54 16 0.36 55 29 0.64 ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32 Consensus pattern (54 bp): GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG Found at i:74028267 original size:27 final size:27 Alignment explanation
Indices: 74027946--74028287 Score: 206 Period size: 27 Copynumber: 12.7 Consensus size: 27 74027936 TAAAAAGTCA * 74027946 AGGGTATTTTGGTAATTTTACAAATTG 1 AGGGTATTTTGGTAATTTTACAAATCG * ** * * 74027973 ATGGTATTTCAGTAATTTTA-AAAACT 1 AGGGTATTTTGGTAATTTTACAAATCG * * 74027999 AGTGGTATTTCGGTAATTTTACAAA-CTA 1 AG-GGTATTTTGGTAATTTTACAAATC-G * 74028027 AGGGTATTTTGGTAATTTTACAAA-CC 1 AGGGTATTTTGGTAATTTTACAAATCG * * * * 74028053 AGGGGTATTTTAGCAATTTTACAGA-CT 1 A-GGGTATTTTGGTAATTTTACAAATCG ** 74028080 AGGGTATTTTGGTAATTTTACTGATCG 1 AGGGTATTTTGGTAATTTTACAAATCG * * * 74028107 AGGGTATTTTGGTAATTTTATAAACCA 1 AGGGTATTTTGGTAATTTTACAAATCG * ** 74028134 AGGGTATTTTAGTAATTTTGTAAATCG 1 AGGGTATTTTGGTAATTTTACAAATCG **** ** 74028161 AGGGTAAAACGGTAATTTTTGTAAATCG 1 AGGGTATTTTGGTAA-TTTTACAAATCG *** * * 74028189 AGGGTAAAATGGTAATTCTATAAATCG 1 AGGGTATTTTGGTAATTTTACAAATCG **** * ** * 74028216 AGGGTAAAACGGTAATTCTGTAAATTG 1 AGGGTATTTTGGTAATTTTACAAATCG * * * 74028243 AGGGTACTTTGGTAATTTTAAAAATTG 1 AGGGTATTTTGGTAATTTTACAAATCG ** * 74028270 AGGACATTTTAGTAATTT 1 AGGGTATTTTGGTAATTT 74028288 GGTAAACTAA Statistics Matches: 259, Mismatches: 50, Indels: 12 0.81 0.16 0.04 Matches are distributed among these distances: 26 25 0.10 27 203 0.78 28 31 0.12 ACGTcount: A:0.33, C:0.07, G:0.21, T:0.39 Consensus pattern (27 bp): AGGGTATTTTGGTAATTTTACAAATCG Found at i:74028502 original size:20 final size:20 Alignment explanation
Indices: 74028471--74028516 Score: 85 Period size: 20 Copynumber: 2.4 Consensus size: 20 74028461 TGGGCCCGTA 74028471 GGCCCA-CATGGCCCTTTTC 1 GGCCCATCATGGCCCTTTTC 74028490 GGCCCATCATGGCCCTTTTC 1 GGCCCATCATGGCCCTTTTC 74028510 GGCCCAT 1 GGCCCAT 74028517 AACGACCCGA Statistics Matches: 26, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 19 6 0.23 20 20 0.77 ACGTcount: A:0.11, C:0.41, G:0.22, T:0.26 Consensus pattern (20 bp): GGCCCATCATGGCCCTTTTC Found at i:74045002 original size:19 final size:20 Alignment explanation
Indices: 74044978--74045015 Score: 60 Period size: 19 Copynumber: 1.9 Consensus size: 20 74044968 TAGTCGTAAA * 74044978 ATAAAATAA-AAGTAAAAAC 1 ATAAAATAATAAATAAAAAC 74044997 ATAAAATAATAAATAAAAA 1 ATAAAATAATAAATAAAAA 74045016 TTTTTAAACA Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 19 9 0.53 20 8 0.47 ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18 Consensus pattern (20 bp): ATAAAATAATAAATAAAAAC Found at i:74052263 original size:38 final size:38 Alignment explanation
Indices: 74052128--74052263 Score: 148 Period size: 38 Copynumber: 3.5 Consensus size: 38 74052118 AAACCCAAAC * * * * * 74052128 ATAACACCAGCACAAAGCCTACGAGACTTTAAACTCAGAT 1 ATAATACCAGCACTAAGCCTGCGAGA-TTT-AACCCGGAT * * 74052168 ATAATACCAGCACTAGGCCTGCGAGATTTAACCCGTAT 1 ATAATACCAGCACTAAGCCTGCGAGATTTAACCCGGAT * * 74052206 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT 1 ATAATACCAGCACTAAGCCTGCGAGATTTAACCCGGAT * 74052244 ATATTACCAGCA-TATAGCCT 1 ATAATACCAGCACTA-AGCCT 74052264 ACTGGTCTTT Statistics Matches: 82, Mismatches: 13, Indels: 4 0.83 0.13 0.04 Matches are distributed among these distances: 37 1 0.01 38 56 0.68 39 3 0.04 40 22 0.27 ACGTcount: A:0.35, C:0.26, G:0.17, T:0.21 Consensus pattern (38 bp): ATAATACCAGCACTAAGCCTGCGAGATTTAACCCGGAT Found at i:74055594 original size:46 final size:46 Alignment explanation
Indices: 74055527--74055697 Score: 306 Period size: 46 Copynumber: 3.7 Consensus size: 46 74055517 TGTAACCCGC * * * * 74055527 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 74055573 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 74055619 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 74055665 CCATAAGTGAACTCGGACTCAACTCAACGAGTT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT 74055698 TGGATGCTCA Statistics Matches: 121, Mismatches: 4, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 46 121 1.00 ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20 Consensus pattern (46 bp): CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT Found at i:74065253 original size:14 final size:14 Alignment explanation
Indices: 74065231--74065262 Score: 55 Period size: 14 Copynumber: 2.3 Consensus size: 14 74065221 TAAAATATAC * 74065231 CATGTTTATAAACT 1 CATGCTTATAAACT 74065245 CATGCTTATAAACT 1 CATGCTTATAAACT 74065259 CATG 1 CATG 74065263 TTTTATTCAT Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 17 1.00 ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38 Consensus pattern (14 bp): CATGCTTATAAACT Found at i:74066126 original size:29 final size:29 Alignment explanation
Indices: 74066089--74066169 Score: 101 Period size: 29 Copynumber: 2.8 Consensus size: 29 74066079 CAAAATACTA * ** 74066089 ATAT-CATGGCCCGAAGCCAAATTAGTTG 1 ATATGCATGGCCCGAAGCCAAATCAGCCG 74066117 ATATGCATGGCCCGAAGCCAAATCAGCCG 1 ATATGCATGGCCCGAAGCCAAATCAGCCG * * * 74066146 ATAAGCATAGCCCAAAGCCAAATC 1 ATATGCATGGCCCGAAGCCAAATC 74066170 GATTTATCTT Statistics Matches: 46, Mismatches: 6, Indels: 1 0.87 0.11 0.02 Matches are distributed among these distances: 28 4 0.09 29 42 0.91 ACGTcount: A:0.36, C:0.27, G:0.20, T:0.17 Consensus pattern (29 bp): ATATGCATGGCCCGAAGCCAAATCAGCCG Found at i:74071182 original size:47 final size:47 Alignment explanation
Indices: 74071119--74071429 Score: 443 Period size: 47 Copynumber: 6.6 Consensus size: 47 74071109 CCCTTCGGGA * * * 74071119 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC 1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC 74071166 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC * 74071213 CTTATCTCATATATGA-A-TGTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATAT-ACACT-TTCACATTCATCACATTGGCCATTCGGC * * * 74071260 CTTATCACACATACA-AATGTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC * 74071307 CTTATCACACATACT-CA-TGTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATA-TACACT-TTCACATTCATCACATTGGCCATTCGGC * 74071354 CTTATCTCATATATGTACACTTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATA--TACACTTTCACATTCATCACATTGGCCATTCGGC 74071403 CTTATCACATATATACACTTTCACATT 1 CTTATCACATATATACACTTTCACATT 74071430 TATTCAAATA Statistics Matches: 244, Mismatches: 12, Indels: 16 0.90 0.04 0.06 Matches are distributed among these distances: 46 3 0.01 47 195 0.80 48 3 0.01 49 42 0.17 50 1 0.00 ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34 Consensus pattern (47 bp): CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC Found at i:74072941 original size:56 final size:56 Alignment explanation
Indices: 74072874--74072993 Score: 231 Period size: 56 Copynumber: 2.1 Consensus size: 56 74072864 TATTAGTTTA 74072874 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT 1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT * 74072930 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT 1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT 74072986 TTGCCCAT 1 TTGCCCAT 74072994 CATCCCTTGT Statistics Matches: 63, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 56 63 1.00 ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45 Consensus pattern (56 bp): TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT Found at i:74074306 original size:40 final size:40 Alignment explanation
Indices: 74074260--74074496 Score: 214 Period size: 40 Copynumber: 5.9 Consensus size: 40 74074250 CCGAATACAC * * * 74074260 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATAT 1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT * ** * 74074300 AACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATAT 1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT * * * 74074340 ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAC 1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT * * * 74074380 ATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTAT 1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT * * * * 74074420 AGTAACTC-GCACAAATGC-CTTC-GGATCTTAGTCTGGATAT 1 A-TCAC-CAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT * * * 74074460 GGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA 1 -ATCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA 74074497 CATCATTCGA Statistics Matches: 160, Mismatches: 31, Indels: 12 0.79 0.15 0.06 Matches are distributed among these distances: 39 3 0.02 40 139 0.87 41 18 0.11 ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25 Consensus pattern (40 bp): ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT Found at i:74074482 original size:120 final size:120 Alignment explanation
Indices: 74074258--74074496 Score: 276 Period size: 120 Copynumber: 2.0 Consensus size: 120 74074248 GCCCGAATAC * * 74074258 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCG 1 ACATCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCG * * 74074323 GGGTTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT 66 GGATTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGAT * * * 74074378 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATAGTAAC-TC-GCACAAATGC-CT 1 ACATCACCAGCATGAATGCTCTTCGGGACCTAGCCCGG--ATA-TAACACCAGCACAAATGCTCT * * * 74074440 TC-GGATCTTAGTC-TGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA 63 TCGGGAT-TTAG-CACGGATAT-ATCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA 74074497 CATCATTCGA Statistics Matches: 102, Mismatches: 10, Indels: 14 0.81 0.08 0.11 Matches are distributed among these distances: 119 3 0.03 120 67 0.66 121 18 0.18 122 10 0.10 123 4 0.04 ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25 Consensus pattern (120 bp): ACATCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCG GGATTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGAT Found at i:74075829 original size:258 final size:258 Alignment explanation
Indices: 74075372--74075886 Score: 811 Period size: 258 Copynumber: 2.0 Consensus size: 258 74075362 TTTCCAAATT * 74075372 CGGAACAGGGAATCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATA 1 CGGAACAGGGAATCCAGAAACCGTTCTGGCCCTGTCTCACGAAAACCTGAATATCTCTTAACATA ** * * * * 74075437 CTGTCCATATGATCGTTTCGTTACTTTTCTATGAAAATAGATTCATCAAGGTTCACTTACATAAT 66 CACTCCATATGACCATTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCACTTAAATAAT * * * 74075502 TTATTCACTATTTAATTCCATTATTACTATTTTTAGTGATTTTTCACATCCACATCACTGCTGCT 131 TTATTCACTATTTAATTCCATTACTACTATTTTTAGTGATTTTCCAAATCCACATCACTGCTGCT 74075567 GTCAGCATCTGCCTTTAAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCG 196 GTCAGCATCTGCCTTTAAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCG * * 74075630 CGGAACAGGGAATCCAGAAACTGTTCTGGCCCTGTTTCACGAAAACCT-AATTATCTCTTAACAT 1 CGGAACAGGGAATCCAGAAACCGTTCTGGCCCTGTCTCACGAAAACCTGAA-TATCTCTTAACAT * * * * * 74075694 ACCACT-CATATGACCATTTCGTTTC-TTCCATATGAAAGTGGATTCATCCAGGTTCATTTAAAT 65 A-CACTCCATATGACCATTTCGTTACTTTCC-TATGAAAATAGATTCATCAAGGTTCACTTAAAT * * 74075757 AATTTATTCACTATTTAATTCCATTCCTACTATTTTTAGTGATTTTCCAAATCTACATCACTGCT 128 AATTTATTCACTATTTAATTCCATTACTACTATTTTTAGTGATTTTCCAAATCCACATCACTGCT 74075822 GCTGTCAGCATCTGCCTTTAAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCC 193 GCTGTCAGCATCTGCCTTTAAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCC 74075887 TTTTAGCATA Statistics Matches: 235, Mismatches: 19, Indels: 6 0.90 0.07 0.02 Matches are distributed among these distances: 257 5 0.02 258 228 0.97 259 2 0.01 ACGTcount: A:0.27, C:0.23, G:0.13, T:0.36 Consensus pattern (258 bp): CGGAACAGGGAATCCAGAAACCGTTCTGGCCCTGTCTCACGAAAACCTGAATATCTCTTAACATA CACTCCATATGACCATTTCGTTACTTTCCTATGAAAATAGATTCATCAAGGTTCACTTAAATAAT TTATTCACTATTTAATTCCATTACTACTATTTTTAGTGATTTTCCAAATCCACATCACTGCTGCT GTCAGCATCTGCCTTTAAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCG Found at i:74076249 original size:16 final size:16 Alignment explanation
Indices: 74076228--74076263 Score: 72 Period size: 16 Copynumber: 2.2 Consensus size: 16 74076218 TTTGGTTCGC 74076228 TGTATTGGATTAGAGG 1 TGTATTGGATTAGAGG 74076244 TGTATTGGATTAGAGG 1 TGTATTGGATTAGAGG 74076260 TGTA 1 TGTA 74076264 ATAGCTAATC Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 20 1.00 ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39 Consensus pattern (16 bp): TGTATTGGATTAGAGG Found at i:74076328 original size:44 final size:45 Alignment explanation
Indices: 74076244--74076334 Score: 121 Period size: 45 Copynumber: 2.0 Consensus size: 45 74076234 GGATTAGAGG * * * 74076244 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA 1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA *** 74076289 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA 1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA 74076333 TG 1 TG 74076335 GAATAGAGGT Statistics Matches: 40, Mismatches: 6, Indels: 1 0.85 0.13 0.02 Matches are distributed among these distances: 44 19 0.47 45 21 0.52 ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37 Consensus pattern (45 bp): TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA Found at i:74076519 original size:16 final size:16 Alignment explanation
Indices: 74076482--74076536 Score: 53 Period size: 15 Copynumber: 3.4 Consensus size: 16 74076472 TTAATCATAT * 74076482 TTAAACATA-ATTATAA 1 TTAAA-ATATATTTTAA 74076498 TT-AAATATATTTTAA 1 TTAAAATATATTTTAA 74076513 TTAAAATATATAATTTAA 1 TTAAAATATAT--TTTAA 74076531 -TAAAAT 1 TTAAAAT 74076537 TCTTAATAAT Statistics Matches: 34, Mismatches: 1, Indels: 7 0.81 0.02 0.17 Matches are distributed among these distances: 14 3 0.09 15 10 0.29 16 10 0.29 17 6 0.18 18 5 0.15 ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44 Consensus pattern (16 bp): TTAAAATATATTTTAA Found at i:74076529 original size:18 final size:18 Alignment explanation
Indices: 74076488--74076536 Score: 61 Period size: 16 Copynumber: 2.9 Consensus size: 18 74076478 ATATTTAAAC 74076488 ATAATTATAATT-AAATAT 1 ATAATT-TAATTAAAATAT 74076506 AT--TTTAATTAAAATAT 1 ATAATTTAATTAAAATAT 74076522 ATAATTTAA-TAAAAT 1 ATAATTTAATTAAAAT 74076537 TCTTAATAAT Statistics Matches: 28, Mismatches: 0, Indels: 7 0.80 0.00 0.20 Matches are distributed among these distances: 15 5 0.18 16 10 0.36 17 6 0.21 18 7 0.25 ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45 Consensus pattern (18 bp): ATAATTTAATTAAAATAT Found at i:74076643 original size:18 final size:17 Alignment explanation
Indices: 74076622--74076656 Score: 52 Period size: 18 Copynumber: 2.0 Consensus size: 17 74076612 TTATTATTAA * 74076622 ATATATTTTAATTAAAAT 1 ATATAATTTAA-TAAAAT 74076640 ATATAATTTAATAAAAT 1 ATATAATTTAATAAAAT 74076657 TCTTAATAAT Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 17 6 0.38 18 10 0.62 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (17 bp): ATATAATTTAATAAAAT Found at i:74076698 original size:120 final size:120 Alignment explanation
Indices: 74076485--74076897 Score: 670 Period size: 120 Copynumber: 3.4 Consensus size: 120 74076475 ATCATATTTA * 74076485 AACATAATTATAATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA 1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA 74076550 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT 66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT 74076605 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA 1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA * * 74076670 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT 66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT * * 74076725 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAACAATTA 1 -AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA * *** * * 74076789 ATATTCTTATATTAAGAGATCTCCAAA-C-TAATATATGATATTGTAAAATATAAATT 65 ATATTCTTATATGAATTTA-CT-CAAATCATAATATATGATACTATAAAATATAAATT * 74076845 AACATAAATATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT 1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT 74076898 NNNNNNNNNN Statistics Matches: 274, Mismatches: 15, Indels: 8 0.92 0.05 0.03 Matches are distributed among these distances: 119 2 0.01 120 263 0.96 121 5 0.02 122 4 0.01 ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42 Consensus pattern (120 bp): AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT Found at i:74076769 original size:18 final size:17 Alignment explanation
Indices: 74076742--74076776 Score: 52 Period size: 18 Copynumber: 2.0 Consensus size: 17 74076732 TTAATATTAA * 74076742 ATATATTTTAATTAAAAT 1 ATATAATTTAA-TAAAAT 74076760 ATATAATTTAATAAAAT 1 ATATAATTTAATAAAAT 74076777 TCTTAACAAT Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 17 6 0.38 18 10 0.62 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (17 bp): ATATAATTTAATAAAAT Found at i:74076883 original size:18 final size:17 Alignment explanation
Indices: 74076862--74076896 Score: 52 Period size: 18 Copynumber: 2.0 Consensus size: 17 74076852 ATATTATTAA * 74076862 ATATATTTTAATTAAAAT 1 ATATAATTTAA-TAAAAT 74076880 ATATAATTTAATAAAAT 1 ATATAATTTAATAAAAT 74076897 TNNNNNNNNN Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 17 6 0.38 18 10 0.62 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (17 bp): ATATAATTTAATAAAAT Found at i:74079806 original size:13 final size:13 Alignment explanation
Indices: 74079788--74079813 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 74079778 CAGCTAAACT 74079788 GAAACAGAAGGAA 1 GAAACAGAAGGAA 74079801 GAAACAGAAGGAA 1 GAAACAGAAGGAA 74079814 CAGCTAAACT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.62, C:0.08, G:0.31, T:0.00 Consensus pattern (13 bp): GAAACAGAAGGAA Found at i:74079819 original size:36 final size:36 Alignment explanation
Indices: 74079778--74079856 Score: 131 Period size: 36 Copynumber: 2.2 Consensus size: 36 74079768 GGTTGTGAAG * 74079778 CAGCTAAACTGAAACAGAAGGAAGAAACAGAAGGAA 1 CAGCTAAACTGAAACAGAAAGAAGAAACAGAAGGAA * 74079814 CAGCTAAACTGAAACAGAAAGAAGAAATAGAAGGAA 1 CAGCTAAACTGAAACAGAAAGAAGAAACAGAAGGAA * 74079850 CGGCTAA 1 CAGCTAA 74079857 GTTGTGAAGT Statistics Matches: 40, Mismatches: 3, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 36 40 1.00 ACGTcount: A:0.54, C:0.14, G:0.24, T:0.08 Consensus pattern (36 bp): CAGCTAAACTGAAACAGAAAGAAGAAACAGAAGGAA Found at i:74081822 original size:22 final size:22 Alignment explanation
Indices: 74081792--74081838 Score: 67 Period size: 22 Copynumber: 2.1 Consensus size: 22 74081782 CTTGGTTTTC 74081792 TTTAGGAATATTCTGTAAATAT 1 TTTAGGAATATTCTGTAAATAT * * * 74081814 TTTATGAATATTTTGTAGATAT 1 TTTAGGAATATTCTGTAAATAT 74081836 TTT 1 TTT 74081839 TTTCTTAAAA Statistics Matches: 22, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 22 22 1.00 ACGTcount: A:0.32, C:0.02, G:0.13, T:0.53 Consensus pattern (22 bp): TTTAGGAATATTCTGTAAATAT Found at i:74086425 original size:22 final size:22 Alignment explanation
Indices: 74086394--74086438 Score: 63 Period size: 22 Copynumber: 2.0 Consensus size: 22 74086384 AGGGGGAGTG * 74086394 TAGGAGTATTCTGTAAATATTT 1 TAGGAATATTCTGTAAATATTT * * 74086416 TAGGAATATTTTGTAGATATTT 1 TAGGAATATTCTGTAAATATTT 74086438 T 1 T 74086439 TTTATTAAAA Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 22 20 1.00 ACGTcount: A:0.31, C:0.02, G:0.18, T:0.49 Consensus pattern (22 bp): TAGGAATATTCTGTAAATATTT Found at i:74087689 original size:16 final size:15 Alignment explanation
Indices: 74087668--74087722 Score: 65 Period size: 16 Copynumber: 3.5 Consensus size: 15 74087658 TGAATTACTG 74087668 ATTACAGCTCTATTCA 1 ATTACAGC-CTATTCA * 74087684 ATTACAACCCTATTCA 1 ATTAC-AGCCTATTCA * 74087700 ATTACAGCCTTATTCT 1 ATTACAGCC-TATTCA 74087716 ATTACAG 1 ATTACAG 74087723 TGAACCAAAC Statistics Matches: 34, Mismatches: 3, Indels: 4 0.83 0.07 0.10 Matches are distributed among these distances: 15 3 0.09 16 29 0.85 17 2 0.06 ACGTcount: A:0.33, C:0.25, G:0.05, T:0.36 Consensus pattern (15 bp): ATTACAGCCTATTCA Found at i:74090053 original size:9 final size:9 Alignment explanation
Indices: 74090039--74090078 Score: 53 Period size: 9 Copynumber: 4.4 Consensus size: 9 74090029 ACACTAATTT * 74090039 ATTATTTGA 1 ATTATTCGA 74090048 ATTATTCGA 1 ATTATTCGA * * 74090057 GTTGTTCGA 1 ATTATTCGA 74090066 ATTATTCGA 1 ATTATTCGA 74090075 ATTA 1 ATTA 74090079 CAAAATTCAA Statistics Matches: 26, Mismatches: 5, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 9 26 1.00 ACGTcount: A:0.30, C:0.07, G:0.15, T:0.47 Consensus pattern (9 bp): ATTATTCGA Found at i:74105201 original size:22 final size:21 Alignment explanation
Indices: 74105176--74105257 Score: 89 Period size: 20 Copynumber: 3.9 Consensus size: 21 74105166 TTTTTAAAAA 74105176 TTTAAAATATATAAAAATTATT 1 TTTAAAA-ATATAAAAATTATT * 74105198 TTTAAAAATCATTAAAATTA-- 1 TTTAAAAAT-ATAAAAATTATT 74105218 TTTAAAAAGTATAAAAA-TATT 1 TTTAAAAA-TATAAAAATTATT * * 74105239 TTTAAAATTAAAAAAATTA 1 TTTAAAAATATAAAAATTA 74105258 ATTAAATGTT Statistics Matches: 51, Mismatches: 4, Indels: 11 0.77 0.06 0.17 Matches are distributed among these distances: 19 2 0.04 20 21 0.41 21 12 0.24 22 16 0.31 ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40 Consensus pattern (21 bp): TTTAAAAATATAAAAATTATT Found at i:74107562 original size:18 final size:18 Alignment explanation
Indices: 74107541--74107597 Score: 51 Period size: 18 Copynumber: 3.0 Consensus size: 18 74107531 CGGAAGCCCG 74107541 AAAGCTAACTGAAGCACA 1 AAAGCTAACTGAAGCACA * * * 74107559 AAAGTGCTAAACGGAAGCCCG 1 AAA--GCT-AACTGAAGCACA * 74107580 AAGGCTAACTGAAGCACA 1 AAAGCTAACTGAAGCACA 74107598 TAAGTGCTAA Statistics Matches: 29, Mismatches: 7, Indels: 6 0.69 0.17 0.14 Matches are distributed among these distances: 18 12 0.41 19 3 0.10 20 3 0.10 21 11 0.38 ACGTcount: A:0.44, C:0.23, G:0.23, T:0.11 Consensus pattern (18 bp): AAAGCTAACTGAAGCACA Found at i:74107621 original size:39 final size:39 Alignment explanation
Indices: 74107498--74107713 Score: 203 Period size: 39 Copynumber: 5.5 Consensus size: 39 74107488 TGATTTGAAA * * * * * 74107498 CCCGAAGTCTAGCTGAAGTACATAACTACTAAACGGAAG 1 CCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAG * * 74107537 CCCGAAAGCTAACTGAAGCACAAAAGTGCTAAACGGAAG 1 CCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAG 74107576 CCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAG 1 CCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAG * ** * 74107615 CCCGAAGTCTGTGTGCTAAACAGAAGC-CCGAAG-GCT-AACTGAAG 1 CCCGAA------G-GCT-AACTGAAGCACATAAGTGCTAAACGGAAG * 74107659 --C--AGGCTAACTGAAGCACACAAGTGCTAAACGGAAG 1 CCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAG 74107694 CCCGAAGGCTAACTGAAGCA 1 CCCGAAGGCTAACTGAAGCA 74107714 GGCTAACTGA Statistics Matches: 145, Mismatches: 17, Indels: 30 0.76 0.09 0.16 Matches are distributed among these distances: 32 8 0.06 33 7 0.05 34 4 0.03 35 7 0.05 37 1 0.01 39 90 0.62 40 1 0.01 42 1 0.01 44 7 0.05 45 4 0.03 46 7 0.05 47 8 0.06 ACGTcount: A:0.38, C:0.24, G:0.25, T:0.13 Consensus pattern (39 bp): CCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAG Found at i:74107665 original size:14 final size:14 Alignment explanation
Indices: 74107646--74107674 Score: 58 Period size: 14 Copynumber: 2.1 Consensus size: 14 74107636 AGAAGCCCGA 74107646 AGGCTAACTGAAGC 1 AGGCTAACTGAAGC 74107660 AGGCTAACTGAAGC 1 AGGCTAACTGAAGC 74107674 A 1 A 74107675 CACAAGTGCT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.38, C:0.21, G:0.28, T:0.14 Consensus pattern (14 bp): AGGCTAACTGAAGC Found at i:74107696 original size:53 final size:53 Alignment explanation
Indices: 74107544--74107766 Score: 284 Period size: 53 Copynumber: 4.0 Consensus size: 53 74107534 AAGCCCGAAA * 74107544 GCTAACTGAAGCACAAAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCACATAAG 1 GCTAACTGAAGCACACAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAG--C---AG * * ** * 74107602 TGCTAAACGGAAGCCCGAAGTCTGTGTGCTAAACAGAAGCCCGAAGGCTAACTGAAGCAG 1 -GCT-AACTGAAGCAC--A--C-AAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCAG 74107662 GCTAACTGAAGCACACAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCAG 1 GCTAACTGAAGCACACAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCAG 74107715 GCTAACTGAAGCACACAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCA 1 GCTAACTGAAGCACACAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCA 74107767 CATAAGTGTT Statistics Matches: 147, Mismatches: 11, Indels: 18 0.84 0.06 0.10 Matches are distributed among these distances: 53 86 0.59 54 1 0.01 56 1 0.01 58 9 0.06 59 6 0.04 60 11 0.07 62 1 0.01 63 1 0.01 65 31 0.21 ACGTcount: A:0.38, C:0.24, G:0.26, T:0.13 Consensus pattern (53 bp): GCTAACTGAAGCACACAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCAG Found at i:74107718 original size:14 final size:14 Alignment explanation
Indices: 74107699--74107727 Score: 58 Period size: 14 Copynumber: 2.1 Consensus size: 14 74107689 GGAAGCCCGA 74107699 AGGCTAACTGAAGC 1 AGGCTAACTGAAGC 74107713 AGGCTAACTGAAGC 1 AGGCTAACTGAAGC 74107727 A 1 A 74107728 CACAAGTGCT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.38, C:0.21, G:0.28, T:0.14 Consensus pattern (14 bp): AGGCTAACTGAAGC Found at i:74107758 original size:39 final size:39 Alignment explanation
Indices: 74107713--74107804 Score: 166 Period size: 39 Copynumber: 2.4 Consensus size: 39 74107703 TAACTGAAGC 74107713 AGGCTAACTGAAGCACACAAGTGCTAAACGGAAGCCCGA 1 AGGCTAACTGAAGCACACAAGTGCTAAACGGAAGCCCGA * * 74107752 AGGCTAACTGAAGCACATAAGTGTTAAACGGAAGCCCGA 1 AGGCTAACTGAAGCACACAAGTGCTAAACGGAAGCCCGA 74107791 AGGCTAACTGAAGC 1 AGGCTAACTGAAGC 74107805 TCATCAGAGT Statistics Matches: 51, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 39 51 1.00 ACGTcount: A:0.38, C:0.23, G:0.26, T:0.13 Consensus pattern (39 bp): AGGCTAACTGAAGCACACAAGTGCTAAACGGAAGCCCGA Found at i:74111384 original size:39 final size:39 Alignment explanation
Indices: 74111341--74111436 Score: 120 Period size: 39 Copynumber: 2.5 Consensus size: 39 74111331 ATCGTGATCT * * * 74111341 GAAGCCTGAAATCTAGCTAAAGCACATAAGTACTAAACG 1 GAAGCCCGAAAGCTAACTAAAGCACATAAGTACTAAACG * * * 74111380 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG 1 GAAGCCCGAAAGCTAACTAAAGCACATAAGTACTAAACG * * 74111419 GAAGCCCGGAGGCTAACT 1 GAAGCCCGAAAGCTAACT 74111437 GAAGTCATCA Statistics Matches: 50, Mismatches: 7, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 39 50 1.00 ACGTcount: A:0.39, C:0.23, G:0.24, T:0.15 Consensus pattern (39 bp): GAAGCCCGAAAGCTAACTAAAGCACATAAGTACTAAACG Found at i:74111437 original size:39 final size:39 Alignment explanation
Indices: 74111360--74111440 Score: 144 Period size: 39 Copynumber: 2.1 Consensus size: 39 74111350 AATCTAGCTA 74111360 AAGCACATAAGTACTAAACGGAAGCCCGAAGGCTAACTG 1 AAGCACATAAGTACTAAACGGAAGCCCGAAGGCTAACTG * * 74111399 AAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAACTG 1 AAGCACATAAGTACTAAACGGAAGCCCGAAGGCTAACTG 74111438 AAG 1 AAG 74111441 TCATCAGAGC Statistics Matches: 40, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 39 40 1.00 ACGTcount: A:0.40, C:0.22, G:0.26, T:0.12 Consensus pattern (39 bp): AAGCACATAAGTACTAAACGGAAGCCCGAAGGCTAACTG Found at i:74113489 original size:23 final size:24 Alignment explanation
Indices: 74113463--74113508 Score: 85 Period size: 23 Copynumber: 2.0 Consensus size: 24 74113453 TTTTTAGTAT 74113463 ACTATTCACAATTTC-AAATTTTC 1 ACTATTCACAATTTCAAAATTTTC 74113486 ACTATTCACAATTTCAAAATTTT 1 ACTATTCACAATTTCAAAATTTT 74113509 TCCTAACTTC Statistics Matches: 22, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 23 15 0.68 24 7 0.32 ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43 Consensus pattern (24 bp): ACTATTCACAATTTCAAAATTTTC Found at i:74114964 original size:22 final size:22 Alignment explanation
Indices: 74114937--74114994 Score: 98 Period size: 22 Copynumber: 2.6 Consensus size: 22 74114927 GTCAAGAAGA 74114937 CCACACGGGCGTGTCGCCCCTT 1 CCACACGGGCGTGTCGCCCCTT * * 74114959 CTACACGAGCGTGTCGCCCCTT 1 CCACACGGGCGTGTCGCCCCTT 74114981 CCACACGGGCGTGT 1 CCACACGGGCGTGT 74114995 GCCTCTGTTT Statistics Matches: 32, Mismatches: 4, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 22 32 1.00 ACGTcount: A:0.12, C:0.41, G:0.28, T:0.19 Consensus pattern (22 bp): CCACACGGGCGTGTCGCCCCTT Found at i:74122816 original size:22 final size:23 Alignment explanation
Indices: 74122791--74122836 Score: 76 Period size: 22 Copynumber: 2.0 Consensus size: 23 74122781 ATACAGAGGG * 74122791 AAAATAAAATAA-AAACAACGAA 1 AAAATAAAATAATAAACAAAGAA 74122813 AAAATAAAATAATAAACAAAGAA 1 AAAATAAAATAATAAACAAAGAA 74122836 A 1 A 74122837 TATCTAGAAG Statistics Matches: 22, Mismatches: 1, Indels: 1 0.92 0.04 0.04 Matches are distributed among these distances: 22 12 0.55 23 10 0.45 ACGTcount: A:0.78, C:0.07, G:0.04, T:0.11 Consensus pattern (23 bp): AAAATAAAATAATAAACAAAGAA Found at i:74123736 original size:30 final size:30 Alignment explanation
Indices: 74123700--74123762 Score: 117 Period size: 30 Copynumber: 2.1 Consensus size: 30 74123690 TCACCTGCTA * 74123700 CAAAATTTAGAATATTGATATTGTATTCAC 1 CAAAATTTAAAATATTGATATTGTATTCAC 74123730 CAAAATTTAAAATATTGATATTGTATTCAC 1 CAAAATTTAAAATATTGATATTGTATTCAC 74123760 CAA 1 CAA 74123763 TTATAGGAGC Statistics Matches: 32, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 30 32 1.00 ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38 Consensus pattern (30 bp): CAAAATTTAAAATATTGATATTGTATTCAC Found at i:74123974 original size:27 final size:27 Alignment explanation
Indices: 74123920--74123974 Score: 74 Period size: 27 Copynumber: 2.0 Consensus size: 27 74123910 TGGGCCCCAC * ** 74123920 CACAACCATTTGCGCCTCTGAGGTAGG 1 CACAACCATTTGCGCCTCAGAGAAAGG * 74123947 CACAATCATTTGCGCCTCAGAGAAAGG 1 CACAACCATTTGCGCCTCAGAGAAAGG 74123974 C 1 C 74123975 TCGATTAGCC Statistics Matches: 24, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 27 24 1.00 ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20 Consensus pattern (27 bp): CACAACCATTTGCGCCTCAGAGAAAGG Found at i:74126892 original size:29 final size:29 Alignment explanation
Indices: 74126847--74126933 Score: 147 Period size: 29 Copynumber: 3.0 Consensus size: 29 74126837 ATAGGGTCAC * 74126847 ATGCTCGTGTGAGCGTAAGGACAAGCTTG 1 ATGCTCGTGTGAACGTAAGGACAAGCTTG 74126876 ATGCTCGTGTGAACGTAAGGACAAGCTTG 1 ATGCTCGTGTGAACGTAAGGACAAGCTTG * * 74126905 ATGTTCGTGTGAACATAAGGACAAGCTTG 1 ATGCTCGTGTGAACGTAAGGACAAGCTTG 74126934 TGTTCCCCTT Statistics Matches: 55, Mismatches: 3, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 29 55 1.00 ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25 Consensus pattern (29 bp): ATGCTCGTGTGAACGTAAGGACAAGCTTG Found at i:74128181 original size:48 final size:48 Alignment explanation
Indices: 74128114--74128227 Score: 167 Period size: 48 Copynumber: 2.4 Consensus size: 48 74128104 CGTTGATGCC * * * 74128114 ATGCTATGTCCCATACATGGGTTTACACAGGTACATATAACATTGTCG 1 ATGCTATGTCTCAGACATGGGTTTACACAGGTAAATATAACATTGTCG * * 74128162 ATG-TCATGTCTCAGACATGGTTTTACACAGGTAAATATATCATTGTCG 1 ATGCT-ATGTCTCAGACATGGGTTTACACAGGTAAATATAACATTGTCG 74128210 ATGCTATGTCTCAGACAT 1 ATGCTATGTCTCAGACAT 74128228 AATCTTACAC Statistics Matches: 59, Mismatches: 5, Indels: 4 0.87 0.07 0.06 Matches are distributed among these distances: 47 1 0.02 48 57 0.97 49 1 0.02 ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33 Consensus pattern (48 bp): ATGCTATGTCTCAGACATGGGTTTACACAGGTAAATATAACATTGTCG Found at i:74128236 original size:48 final size:48 Alignment explanation
Indices: 74128136--74128239 Score: 147 Period size: 48 Copynumber: 2.2 Consensus size: 48 74128126 ATACATGGGT * ** * 74128136 TTACACAGGTACATATAACATTGTCGATGTCATGTCTCAGACATGGTT 1 TTACACAGGTAAATATAACATTGTCGATGTCATGTCTCAGACATAATC * 74128184 TTACACAGGTAAATATATCATTGTCGATG-CTATGTCTCAGACATAATC 1 TTACACAGGTAAATATAACATTGTCGATGTC-ATGTCTCAGACATAATC 74128232 TTACACAG 1 TTACACAG 74128240 AATATCATTT Statistics Matches: 50, Mismatches: 5, Indels: 2 0.88 0.09 0.04 Matches are distributed among these distances: 47 1 0.02 48 49 0.98 ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33 Consensus pattern (48 bp): TTACACAGGTAAATATAACATTGTCGATGTCATGTCTCAGACATAATC Found at i:74133633 original size:43 final size:42 Alignment explanation
Indices: 74133585--74133681 Score: 117 Period size: 43 Copynumber: 2.3 Consensus size: 42 74133575 AGCTCGAGTG * 74133585 GATGAGGCACTATATGCGTCGTAATATTGCTTCGGA-T-AATTC 1 GATGAGGCACTATATGC--CGTAATATTGCTTCGAATTAAATTC * * 74133627 TGATGAGGCACTATGTGCCGTAGTATTGCTTCGAATTAAATTC 1 -GATGAGGCACTATATGCCGTAATATTGCTTCGAATTAAATTC * 74133670 GATGAGGTACTA 1 GATGAGGCACTA 74133682 AGTACGGATT Statistics Matches: 48, Mismatches: 4, Indels: 5 0.84 0.07 0.09 Matches are distributed among these distances: 41 15 0.31 42 12 0.25 43 21 0.44 ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33 Consensus pattern (42 bp): GATGAGGCACTATATGCCGTAATATTGCTTCGAATTAAATTC Found at i:74134834 original size:16 final size:16 Alignment explanation
Indices: 74134813--74134844 Score: 64 Period size: 16 Copynumber: 2.0 Consensus size: 16 74134803 CACGATTAAG 74134813 TCCCGATTTGTTTCTA 1 TCCCGATTTGTTTCTA 74134829 TCCCGATTTGTTTCTA 1 TCCCGATTTGTTTCTA 74134845 ACATGTGAAT Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 16 1.00 ACGTcount: A:0.12, C:0.25, G:0.12, T:0.50 Consensus pattern (16 bp): TCCCGATTTGTTTCTA Found at i:74141353 original size:53 final size:53 Alignment explanation
Indices: 74141295--74141395 Score: 175 Period size: 53 Copynumber: 1.9 Consensus size: 53 74141285 TTATATATAT * 74141295 AACACGCATATATATGTATACTACCAACTCCCCCATTTATATATTATAAACAC 1 AACACGCATATATATGTATACTACCAACTCCCCCAGTTATATATTATAAACAC * * 74141348 AACACGCATATATATGTATATTGCCAACTCCCCCAGTTATATATTATA 1 AACACGCATATATATGTATACTACCAACTCCCCCAGTTATATATTATA 74141396 TATATAACCT Statistics Matches: 45, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 53 45 1.00 ACGTcount: A:0.38, C:0.25, G:0.06, T:0.32 Consensus pattern (53 bp): AACACGCATATATATGTATACTACCAACTCCCCCAGTTATATATTATAAACAC Found at i:74141391 original size:55 final size:54 Alignment explanation
Indices: 74141277--74141395 Score: 161 Period size: 53 Copynumber: 2.2 Consensus size: 54 74141267 GCCGCACTCA * * * * 74141277 TATATATTTTATATATATAACACGCATATATATGTATACTACCAACTCCCCCAT 1 TATATATATTATAAACACAACACGCATATATATGTATACTACCAACTCCCCCAT * * * 74141331 T-TATATATTATAAACACAACACGCATATATATGTATATTGCCAACTCCCCCAG 1 TATATATATTATAAACACAACACGCATATATATGTATACTACCAACTCCCCCAT 74141384 T-TATATATTATA 1 TATATATATTATA 74141396 TATATAACCT Statistics Matches: 58, Mismatches: 7, Indels: 1 0.88 0.11 0.02 Matches are distributed among these distances: 53 57 0.98 54 1 0.02 ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36 Consensus pattern (54 bp): TATATATATTATAAACACAACACGCATATATATGTATACTACCAACTCCCCCAT Found at i:74145061 original size:58 final size:57 Alignment explanation
Indices: 74144992--74145164 Score: 163 Period size: 61 Copynumber: 2.9 Consensus size: 57 74144982 TTTTTATAAT * * 74144992 ATTATATATTATGATTTTTTAATTCATA-TT-ATAATAATTATATTAAAAATATTATTAA 1 ATTATATATTAT-ATTTTTAAATT-ATATTTAATAATAATTATATT-AAAATATAATTAA * * * 74145050 ATTATATATTAT-TCTATTAAATTGTATTTAATAATAATTATGTTAAAATATAATTAA 1 ATTATATATTATAT-TTTTAAATTATATTTAATAATAATTATATTAAAATATAATTAA * * * * * 74145107 ATTATTTATTATTATTTTTATTAAAATATATTTAACAATAATTTTATTAAAATTTAAT 1 ATTA--TA-TATTATATTT-TTAAATTATATTTAATAATAATTATATTAAAATATAAT 74145165 AATAATAACA Statistics Matches: 95, Mismatches: 12, Indels: 13 0.79 0.10 0.11 Matches are distributed among these distances: 56 3 0.03 57 25 0.26 58 25 0.26 59 2 0.02 60 7 0.07 61 33 0.35 ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52 Consensus pattern (57 bp): ATTATATATTATATTTTTAAATTATATTTAATAATAATTATATTAAAATATAATTAA Found at i:74145147 original size:61 final size:57 Alignment explanation
Indices: 74145024--74145164 Score: 165 Period size: 61 Copynumber: 2.4 Consensus size: 57 74145014 TTCATATTAT * * * * 74145024 AATAATTATATTAAAAATATTATTAAATTATATATTATTCTATTAAATTGTATTTAAT 1 AATAATTATATT-AAAATATAATTAAATTATATATTATTCTATTAAAATATATTTAAC * * 74145082 AATAATTATGTTAAAATATAATTAAATTATTTATTATTATTTTTATTAAAATATATTTAAC 1 AATAATTATATTAAAATATAATTAAATTA--TA-TATTA-TTCTATTAAAATATATTTAAC * * 74145143 AATAATTTTATTAAAATTTAAT 1 AATAATTATATTAAAATATAAT 74145165 AATAATAACA Statistics Matches: 70, Mismatches: 9, Indels: 5 0.83 0.11 0.06 Matches are distributed among these distances: 57 16 0.23 58 11 0.16 59 2 0.03 60 5 0.07 61 36 0.51 ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50 Consensus pattern (57 bp): AATAATTATATTAAAATATAATTAAATTATATATTATTCTATTAAAATATATTTAAC Found at i:74146068 original size:14 final size:14 Alignment explanation
Indices: 74146049--74146097 Score: 64 Period size: 14 Copynumber: 3.6 Consensus size: 14 74146039 CTTATTTTAT 74146049 TTAAAATAACTAAA 1 TTAAAATAACTAAA * 74146063 TTAAAA-AAATAAA 1 TTAAAATAACTAAA * 74146076 TTAAAATAACCAAA 1 TTAAAATAACTAAA * 74146090 ATAAAATA 1 TTAAAATA 74146098 GACCCTATTT Statistics Matches: 30, Mismatches: 4, Indels: 2 0.83 0.11 0.06 Matches are distributed among these distances: 13 12 0.40 14 18 0.60 ACGTcount: A:0.69, C:0.06, G:0.00, T:0.24 Consensus pattern (14 bp): TTAAAATAACTAAA Found at i:74146077 original size:13 final size:14 Alignment explanation
Indices: 74146049--74146084 Score: 56 Period size: 13 Copynumber: 2.6 Consensus size: 14 74146039 CTTATTTTAT * 74146049 TTAAAATAACTAAA 1 TTAAAATAAATAAA 74146063 TTAAAA-AAATAAA 1 TTAAAATAAATAAA 74146076 TTAAAATAA 1 TTAAAATAA 74146085 CCAAAATAAA Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 13 12 0.60 14 8 0.40 ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28 Consensus pattern (14 bp): TTAAAATAAATAAA Found at i:74148336 original size:26 final size:26 Alignment explanation
Indices: 74148300--74148352 Score: 106 Period size: 26 Copynumber: 2.0 Consensus size: 26 74148290 GTTGGTACTT 74148300 ATAAAAGCTACTTTGACATCCATACC 1 ATAAAAGCTACTTTGACATCCATACC 74148326 ATAAAAGCTACTTTGACATCCATACC 1 ATAAAAGCTACTTTGACATCCATACC 74148352 A 1 A 74148353 ATTTATTCTT Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 26 27 1.00 ACGTcount: A:0.40, C:0.26, G:0.08, T:0.26 Consensus pattern (26 bp): ATAAAAGCTACTTTGACATCCATACC Found at i:74151099 original size:56 final size:56 Alignment explanation
Indices: 74151013--74151119 Score: 196 Period size: 56 Copynumber: 1.9 Consensus size: 56 74151003 AGCATCCACA * 74151013 TAAAGCAGGTAGAAGAAACAATTAGAAAGACTTGCATACCTTTCATGCTCAACATT 1 TAAAGCAGGTAGAAGAAACAATTAAAAAGACTTGCATACCTTTCATGCTCAACATT * 74151069 TAAAGCAGGTAGAAGAAATAATTAAAAAGACTTGCATACCTTTCATGCTCA 1 TAAAGCAGGTAGAAGAAACAATTAAAAAGACTTGCATACCTTTCATGCTCA 74151120 GAAGCCAAAT Statistics Matches: 49, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 56 49 1.00 ACGTcount: A:0.42, C:0.17, G:0.16, T:0.25 Consensus pattern (56 bp): TAAAGCAGGTAGAAGAAACAATTAAAAAGACTTGCATACCTTTCATGCTCAACATT Found at i:74154644 original size:31 final size:31 Alignment explanation
Indices: 74154609--74154670 Score: 97 Period size: 31 Copynumber: 2.0 Consensus size: 31 74154599 ATGTAATGTA * * 74154609 ATGATCCATTAGAGGGAATGTTTTCTTGAGT 1 ATGATCCATTAGAGAGAATGCTTTCTTGAGT * 74154640 ATGATGCATTAGAGAGAATGCTTTCTTGAGT 1 ATGATCCATTAGAGAGAATGCTTTCTTGAGT 74154671 TTTAACTGTG Statistics Matches: 28, Mismatches: 3, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 31 28 1.00 ACGTcount: A:0.27, C:0.10, G:0.26, T:0.37 Consensus pattern (31 bp): ATGATCCATTAGAGAGAATGCTTTCTTGAGT Found at i:74158733 original size:42 final size:42 Alignment explanation
Indices: 74158670--74158796 Score: 170 Period size: 42 Copynumber: 3.0 Consensus size: 42 74158660 CTTCGTTTTC ** * * 74158670 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA 1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A * 74158713 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA 1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA 74158754 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA 1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA 74158795 TC 1 TC 74158797 TCACTGATGC Statistics Matches: 76, Mismatches: 6, Indels: 6 0.86 0.07 0.07 Matches are distributed among these distances: 41 10 0.13 42 64 0.84 43 2 0.03 ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30 Consensus pattern (42 bp): TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA Found at i:74158823 original size:46 final size:47 Alignment explanation
Indices: 74158714--74158874 Score: 151 Period size: 42 Copynumber: 3.6 Consensus size: 47 74158704 TTCACATAAT * * * 74158714 GATGCCATAGCCCAGCTATGGTCTTACAC-AT---AT-TCAT-ATATC 1 GATGCCATATCCCAGATATGGTCTTACACAATAGCATAT-ATCACATC * * * 74158756 GATGCCATAGCCCAGCTATGGTCTTACACGAATCA-CATATCTCAC-T- 1 GATGCCATATCCCAGATATGGTCTTACAC-AAT-AGCATATATCACATC * * 74158802 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACATC 1 GATGCCATATCCCAGATATGGTCTTACACAATAGCATATATCACATC * 74158849 GATGCCATATCCCATATATGGTCTTA 1 GATGCCATATCCCAGATATGGTCTTA 74158875 TACGGAAATC Statistics Matches: 101, Mismatches: 8, Indels: 15 0.81 0.06 0.12 Matches are distributed among these distances: 42 29 0.29 44 3 0.03 45 11 0.11 46 27 0.27 47 29 0.29 48 2 0.02 ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30 Consensus pattern (47 bp): GATGCCATATCCCAGATATGGTCTTACACAATAGCATATATCACATC Found at i:74158858 original size:47 final size:48 Alignment explanation
Indices: 74158753--74158878 Score: 161 Period size: 47 Copynumber: 2.7 Consensus size: 48 74158743 ATATTCATAT * * * * 74158753 ATCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC 1 ATCGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC * 74158801 -T-GATGCCATATCCCAGATATGGTCTTATAC-AGT-AGCATATATCAC 1 ATCGATGCCATATCCCAGATATGGTCTTATACGAATCA-CATATATCAC * 74158846 ATCGATGCCATATCCCATATATGGTCTTATACG 1 ATCGATGCCATATCCCAGATATGGTCTTATACG 74158879 GAAATCACTT Statistics Matches: 68, Mismatches: 6, Indels: 8 0.83 0.07 0.10 Matches are distributed among these distances: 44 1 0.01 45 11 0.16 46 27 0.40 47 29 0.43 ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29 Consensus pattern (48 bp): ATCGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC Found at i:74158939 original size:31 final size:31 Alignment explanation
Indices: 74158904--74159075 Score: 281 Period size: 31 Copynumber: 5.5 Consensus size: 31 74158894 TTTTAGCAGA * * 74158904 AGCTACCACTATTCACTGATTAGGTAGCCGG 1 AGCTACCACTTTTCACTGATCAGGTAGCCGG * 74158935 AGCTACCATTTTTCACTGATCAGGTAGCCGG 1 AGCTACCACTTTTCACTGATCAGGTAGCCGG 74158966 AGCTACCACTTTTCACTGATCAGGTAGCCGG 1 AGCTACCACTTTTCACTGATCAGGTAGCCGG * * 74158997 AGCTACCACTTTTCACTGATCAGGTAGCAGA 1 AGCTACCACTTTTCACTGATCAGGTAGCCGG * * 74159028 AGCTACCACTTTTCACTGATCAGGTAGCTGA 1 AGCTACCACTTTTCACTGATCAGGTAGCCGG 74159059 AGCTACCACTTTTCACT 1 AGCTACCACTTTTCACT 74159076 TGTCATTTGT Statistics Matches: 134, Mismatches: 7, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 31 134 1.00 ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28 Consensus pattern (31 bp): AGCTACCACTTTTCACTGATCAGGTAGCCGG Found at i:74159157 original size:50 final size:51 Alignment explanation
Indices: 74159051--74159179 Score: 199 Period size: 50 Copynumber: 2.5 Consensus size: 51 74159041 CACTGATCAG * * * 74159051 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT 1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT * 74159102 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT 1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT 74159152 GTAGCCGAAGCTATCACTTATCACTTGT 1 GTAGCCGAAGCTATCACTTATCACTTGT 74159180 TGCCATGGTC Statistics Matches: 72, Mismatches: 4, Indels: 4 0.90 0.05 0.05 Matches are distributed among these distances: 50 45 0.62 51 27 0.38 ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36 Consensus pattern (51 bp): GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT Found at i:74165876 original size:30 final size:30 Alignment explanation
Indices: 74165842--74165903 Score: 124 Period size: 30 Copynumber: 2.1 Consensus size: 30 74165832 ACTGTGGCGA 74165842 TTGAAAAAACTTGTGTAAATGCTCTAATTG 1 TTGAAAAAACTTGTGTAAATGCTCTAATTG 74165872 TTGAAAAAACTTGTGTAAATGCTCTAATTG 1 TTGAAAAAACTTGTGTAAATGCTCTAATTG 74165902 TT 1 TT 74165904 CCTTAGTGAA Statistics Matches: 32, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 30 32 1.00 ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39 Consensus pattern (30 bp): TTGAAAAAACTTGTGTAAATGCTCTAATTG Found at i:74167066 original size:42 final size:41 Alignment explanation
Indices: 74167007--74167101 Score: 145 Period size: 42 Copynumber: 2.3 Consensus size: 41 74166997 TCCTAATTGG * 74167007 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAGA 1 GAAAAT-ATTCCCTTATTCTAATAAACTACTAAAACATAAAA * 74167049 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA 1 GAAAATA-TTCCCTTATTCTAATAAACTACTAAAACATAAAA * 74167091 TAAAATATTCC 1 GAAAATATTCC 74167102 TAGAATATGA Statistics Matches: 49, Mismatches: 3, Indels: 3 0.89 0.05 0.05 Matches are distributed among these distances: 41 5 0.10 42 44 0.90 ACGTcount: A:0.49, C:0.16, G:0.05, T:0.29 Consensus pattern (41 bp): GAAAATATTCCCTTATTCTAATAAACTACTAAAACATAAAA Found at i:74167135 original size:19 final size:19 Alignment explanation
Indices: 74167111--74167152 Score: 75 Period size: 19 Copynumber: 2.2 Consensus size: 19 74167101 CTAGAATATG 74167111 AATAAAACTTATCTACCTA 1 AATAAAACTTATCTACCTA * 74167130 AATAAAATTTATCTACCTA 1 AATAAAACTTATCTACCTA 74167149 AATA 1 AATA 74167153 TATTTAAAAT Statistics Matches: 22, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 19 22 1.00 ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33 Consensus pattern (19 bp): AATAAAACTTATCTACCTA Found at i:74168854 original size:17 final size:16 Alignment explanation
Indices: 74168814--74168864 Score: 61 Period size: 18 Copynumber: 3.1 Consensus size: 16 74168804 TGTAAAACTA 74168814 ATGTATGATACTTTTTTT 1 ATGTATGATA--TTTTTT 74168832 ATGTATGATATTTTTT 1 ATGTATGATATTTTTT 74168848 ATGGTATG-T-TTTTTT 1 AT-GTATGATATTTTTT 74168863 AT 1 AT 74168865 TAAAGTGTCT Statistics Matches: 32, Mismatches: 0, Indels: 5 0.86 0.00 0.14 Matches are distributed among these distances: 15 8 0.25 16 9 0.28 17 5 0.16 18 10 0.31 ACGTcount: A:0.22, C:0.02, G:0.14, T:0.63 Consensus pattern (16 bp): ATGTATGATATTTTTT Found at i:74173946 original size:20 final size:21 Alignment explanation
Indices: 74173907--74173948 Score: 59 Period size: 22 Copynumber: 2.0 Consensus size: 21 74173897 AACTAAATCG 74173907 ATTTAAATATATCCATATTATT 1 ATTTAAATATAT-CATATTATT * 74173929 ATTTAATTATAT-ATATTATT 1 ATTTAAATATATCATATTATT 74173949 TAATATCTAG Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 20 8 0.42 22 11 0.58 ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55 Consensus pattern (21 bp): ATTTAAATATATCATATTATT Found at i:74173947 original size:17 final size:16 Alignment explanation
Indices: 74173921--74173952 Score: 55 Period size: 17 Copynumber: 1.9 Consensus size: 16 74173911 AAATATATCC 74173921 ATATTATTATTTAATT 1 ATATTATTATTTAATT 74173937 ATATATATTATTTAAT 1 ATAT-TATTATTTAAT 74173953 ATCTAGTAAT Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 16 4 0.27 17 11 0.73 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (16 bp): ATATTATTATTTAATT Found at i:74174274 original size:23 final size:23 Alignment explanation
Indices: 74174248--74174291 Score: 70 Period size: 23 Copynumber: 1.9 Consensus size: 23 74174238 GATATAAATT * 74174248 ATATAATATAAAATTAAAAAAGA 1 ATATAATAAAAAATTAAAAAAGA * 74174271 ATATATTAAAAAATTAAAAAA 1 ATATAATAAAAAATTAAAAAA 74174292 AATGAGCCAA Statistics Matches: 19, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 23 19 1.00 ACGTcount: A:0.70, C:0.00, G:0.02, T:0.27 Consensus pattern (23 bp): ATATAATAAAAAATTAAAAAAGA Found at i:74180041 original size:9 final size:9 Alignment explanation
Indices: 74180027--74180086 Score: 59 Period size: 9 Copynumber: 6.3 Consensus size: 9 74180017 CTCTCTGAAT 74180027 AAAAATTTA 1 AAAAATTTA 74180036 AAAAA-TTA 1 AAAAATTTA * 74180044 AAATAATTTTT 1 AAA-AA-TTTA 74180055 AAAAATTTA 1 AAAAATTTA * 74180064 AAATATTTA 1 AAAAATTTA 74180073 TAAAAATTCTA 1 -AAAAATT-TA 74180084 AAA 1 AAA 74180087 TTTATATTTT Statistics Matches: 42, Mismatches: 4, Indels: 9 0.76 0.07 0.16 Matches are distributed among these distances: 8 6 0.14 9 18 0.43 10 11 0.26 11 7 0.17 ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37 Consensus pattern (9 bp): AAAAATTTA Found at i:74180057 original size:20 final size:19 Alignment explanation
Indices: 74180032--74180078 Score: 67 Period size: 20 Copynumber: 2.4 Consensus size: 19 74180022 TGAATAAAAA 74180032 TTTAAAAAATTAAAATAATT 1 TTTAAAAAATTAAAAT-ATT * 74180052 TTTAAAAATTTAAAATATT 1 TTTAAAAAATTAAAATATT * 74180071 TATAAAAA 1 TTTAAAAA 74180079 TTCTAAAATT Statistics Matches: 25, Mismatches: 2, Indels: 1 0.89 0.07 0.04 Matches are distributed among these distances: 19 10 0.40 20 15 0.60 ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40 Consensus pattern (19 bp): TTTAAAAAATTAAAATATT Found at i:74180085 original size:20 final size:19 Alignment explanation
Indices: 74180026--74180087 Score: 76 Period size: 19 Copynumber: 3.3 Consensus size: 19 74180016 ACTCTCTGAA 74180026 TAAAA-ATTTA-AAAAA-T 1 TAAAATATTTATAAAAATT * 74180042 TAAAATAATTTTTAAAAATT 1 TAAAAT-ATTTATAAAAATT 74180062 TAAAATATTTATAAAAATT 1 TAAAATATTTATAAAAATT 74180081 CTAAAAT 1 -TAAAAT 74180088 TTATATTTTT Statistics Matches: 39, Mismatches: 2, Indels: 6 0.83 0.04 0.13 Matches are distributed among these distances: 16 5 0.13 18 4 0.10 19 17 0.44 20 13 0.33 ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39 Consensus pattern (19 bp): TAAAATATTTATAAAAATT Found at i:74180086 original size:27 final size:27 Alignment explanation
Indices: 74180056--74180120 Score: 78 Period size: 26 Copynumber: 2.4 Consensus size: 27 74180046 ATAATTTTTA * 74180056 AAAATTTAAAATATTTATAAAAATTCT 1 AAAATTTAAAATATTTATAAAAATTAT * * * 74180083 AAAATTT-ATATTTTTTTAAAAATTAT 1 AAAATTTAAAATATTTATAAAAATTAT 74180109 ACAAATTTAAAA 1 A-AAATTTAAAA 74180121 AATTCTAAAG Statistics Matches: 31, Mismatches: 5, Indels: 3 0.79 0.13 0.08 Matches are distributed among these distances: 26 16 0.52 27 13 0.42 28 2 0.06 ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43 Consensus pattern (27 bp): AAAATTTAAAATATTTATAAAAATTAT Found at i:74180142 original size:44 final size:45 Alignment explanation
Indices: 74180050--74180157 Score: 116 Period size: 44 Copynumber: 2.4 Consensus size: 45 74180040 ATTAAAATAA ** 74180050 TTTTTAAAAATTTAAAATATTTATAAAAATTCTAAAATTTATATT 1 TTTTTAAAAATTTAAAATATTTATAAAAATTCTAAAAAGTATATT * 74180095 TTTTTAAAAATTATACAA-ATTTA-AAAAATTCTAAAGAAAGT-TA-T 1 TTTTTAAAAATT-TAAAATATTTATAAAAATTCT-AA-AAAGTATATT ** 74180139 TTTTTAAATTTTTAAAATA 1 TTTTTAAAAATTTAAAATA 74180158 ATAATTTTGT Statistics Matches: 53, Mismatches: 6, Indels: 9 0.78 0.09 0.13 Matches are distributed among these distances: 43 4 0.08 44 21 0.40 45 21 0.40 46 7 0.13 ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46 Consensus pattern (45 bp): TTTTTAAAAATTTAAAATATTTATAAAAATTCTAAAAAGTATATT Found at i:74181438 original size:20 final size:18 Alignment explanation
Indices: 74181413--74181452 Score: 53 Period size: 18 Copynumber: 2.1 Consensus size: 18 74181403 TAGAGTCAAA * 74181413 TATTTAAGATATTAGAATTT 1 TATTTAA-ATACTA-AATTT 74181433 TATTTAAATACTAAATTT 1 TATTTAAATACTAAATTT 74181451 TA 1 TA 74181453 ATATTATATC Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 18 7 0.37 19 5 0.26 20 7 0.37 ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50 Consensus pattern (18 bp): TATTTAAATACTAAATTT Found at i:74192628 original size:27 final size:27 Alignment explanation
Indices: 74192598--74192681 Score: 98 Period size: 27 Copynumber: 3.1 Consensus size: 27 74192588 CTATTGTAGG 74192598 ATTCGCCACAAAGGTGATTCTTTCATA 1 ATTCGCCACAAAGGTGATTCTTTCATA * * * ** 74192625 ATTCACAACAAAGGTGATTCTTGCAGG 1 ATTCGCCACAAAGGTGATTCTTTCATA * 74192652 ATTCGCCACAAAGACT-ATTCTTTCATA 1 ATTCGCCACAAAG-GTGATTCTTTCATA 74192679 ATT 1 ATT 74192682 TTCTAAAAAT Statistics Matches: 45, Mismatches: 11, Indels: 2 0.78 0.19 0.03 Matches are distributed among these distances: 27 44 0.98 28 1 0.02 ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32 Consensus pattern (27 bp): ATTCGCCACAAAGGTGATTCTTTCATA Done.