Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 223 of 284
Found at i:74194278 original size:27 final size:27
Alignment explanation
Indices: 74194248--74194331 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
74194238 CTATTGTAGG
74194248 ATTCGCCACAAAGGTGATTCTTTCATA
1 ATTCGCCACAAAGGTGATTCTTTCATA
* * * **
74194275 ATTCACAACAAAGGTGATTCTTGCAGG
1 ATTCGCCACAAAGGTGATTCTTTCATA
*
74194302 ATTCGCCACAAAGACT-ATTCTTTCATA
1 ATTCGCCACAAAG-GTGATTCTTTCATA
74194329 ATT
1 ATT
74194332 TTCTAAAAAT
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
27 44 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (27 bp):
ATTCGCCACAAAGGTGATTCTTTCATA
Found at i:74194372 original size:27 final size:27
Alignment explanation
Indices: 74194306--74194378 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
74194296 TGCAGGATTC
* **
74194306 GCCACAAAGACTATTCTTTCATAATTT
1 GCCACAAAGGCTATTCTTTCATAATAA
* * * * *
74194333 TCTAAAAATGCTATTCTTTCGTAATAA
1 GCCACAAAGGCTATTCTTTCATAATAA
74194360 GCCACAAAGGCTATTCTTT
1 GCCACAAAGGCTATTCTTT
74194379 TTTAACATGT
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.37
Consensus pattern (27 bp):
GCCACAAAGGCTATTCTTTCATAATAA
Found at i:74199372 original size:32 final size:32
Alignment explanation
Indices: 74199336--74199399 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
74199326 ATATTTATGC
74199336 GTGATGATGCAATATAATTAGAAATTTTAGTT
1 GTGATGATGCAATATAATTAGAAATTTTAGTT
*
74199368 GTGATGATGCAATATAATTAGCAATTTTAGTT
1 GTGATGATGCAATATAATTAGAAATTTTAGTT
74199400 TAAAAGTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.41
Consensus pattern (32 bp):
GTGATGATGCAATATAATTAGAAATTTTAGTT
Found at i:74205228 original size:20 final size:20
Alignment explanation
Indices: 74205194--74205233 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
74205184 TTTTGTTCTA
*
74205194 CTTTGTTCTATTCTGCTCTG
1 CTTTGTTCTACTCTGCTCTG
* *
74205214 CTTTGTTCTGCTCTGTTCTG
1 CTTTGTTCTACTCTGCTCTG
74205234 TTATGTTGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.03, C:0.25, G:0.17, T:0.55
Consensus pattern (20 bp):
CTTTGTTCTACTCTGCTCTG
Found at i:74205235 original size:15 final size:15
Alignment explanation
Indices: 74205182--74205235 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
74205172 ATATATTTGT
* * *
74205182 TGTTTTGTTCTACTT
1 TGTTCTGTTCTGCTC
*
74205197 TGTTCTATTCTGCTC
1 TGTTCTGTTCTGCTC
74205212 TGCTT-TGTTCTGCTC
1 TG-TTCTGTTCTGCTC
74205227 TGTTCTGTT
1 TGTTCTGTT
74205236 ATGTTGTACT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
14 2 0.06
15 28 0.88
16 2 0.06
ACGTcount: A:0.04, C:0.20, G:0.17, T:0.59
Consensus pattern (15 bp):
TGTTCTGTTCTGCTC
Found at i:74206586 original size:20 final size:20
Alignment explanation
Indices: 74206552--74206591 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
74206542 TTTTGTTCTA
*
74206552 CTTTGTTCTATTCTGCTCTG
1 CTTTGTTCTACTCTGCTCTG
* *
74206572 CTTTGTTCTGCTCTGTTCTG
1 CTTTGTTCTACTCTGCTCTG
74206592 TTATGTTGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.03, C:0.25, G:0.17, T:0.55
Consensus pattern (20 bp):
CTTTGTTCTACTCTGCTCTG
Found at i:74206593 original size:15 final size:15
Alignment explanation
Indices: 74206540--74206593 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
74206530 ATATATTTGT
* * *
74206540 TGTTTTGTTCTACTT
1 TGTTCTGTTCTGCTC
*
74206555 TGTTCTATTCTGCTC
1 TGTTCTGTTCTGCTC
74206570 TGCTT-TGTTCTGCTC
1 TG-TTCTGTTCTGCTC
74206585 TGTTCTGTT
1 TGTTCTGTT
74206594 ATGTTGTACT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
14 2 0.06
15 28 0.88
16 2 0.06
ACGTcount: A:0.04, C:0.20, G:0.17, T:0.59
Consensus pattern (15 bp):
TGTTCTGTTCTGCTC
Found at i:74210666 original size:2 final size:2
Alignment explanation
Indices: 74210659--74210693 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
74210649 TTGAGTTGTT
* *
74210659 TA TA TA TA TC TA TA TA TC TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
74210694 CTTTAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:74216174 original size:21 final size:20
Alignment explanation
Indices: 74216148--74216205 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
74216138 TTATACTAAT
*
74216148 TTTTTTAAATTTTTATTTTTA
1 TTTTTT-AATTTTTATTTTGA
* *
74216169 TTTTTTTAATCTTAATTTTGA
1 -TTTTTTAATTTTTATTTTGA
*
74216190 TTTATTTTATTTTTAT
1 TTT-TTTAATTTTTAT
74216206 AATTTTTGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 3 0.10
21 20 0.69
22 6 0.21
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTTTTAATTTTTATTTTGA
Found at i:74222995 original size:6 final size:6
Alignment explanation
Indices: 74222984--74223008 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
74222974 GTAATGGTAG
74222984 CAGTAA CAGTAA CAGTAA CAGTAA C
1 CAGTAA CAGTAA CAGTAA CAGTAA C
74223009 GGTATTCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.20, G:0.16, T:0.16
Consensus pattern (6 bp):
CAGTAA
Found at i:74223086 original size:45 final size:45
Alignment explanation
Indices: 74222992--74223102 Score: 132
Period size: 45 Copynumber: 2.5 Consensus size: 45
74222982 AGCAGTAACA
* * * ** **
74222992 GTAACAGTAACAGTAACGGTATTCAACATACAAAATGTTGAATCT
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAATGTCAAATAG
* *
74223037 GTAACAGTAACGGTAATAGTATTCAACACACAAAGTGTCAAATAG
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAATGTCAAATAG
*
74223082 GTAACAGTAAAGGTAACAGTA
1 GTAACAGTAACGGTAACAGTA
74223103 ACAATATTCG
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.44, C:0.14, G:0.18, T:0.23
Consensus pattern (45 bp):
GTAACAGTAACGGTAACAGTATTCAACACACAAAATGTCAAATAG
Found at i:74223119 original size:51 final size:49
Alignment explanation
Indices: 74223056--74223226 Score: 189
Period size: 45 Copynumber: 3.6 Consensus size: 49
74223046 ACGGTAATAG
* *
74223056 TATTCAACACACAAAGTGTCAAATAGGTAACAGTAAAGGTAACAGTAACAA
1 TATTCGACACACAAAGTGCCAAATAGGTAACAGT--AGGTAACAGTAACAA
*
74223107 TATTCGACACACAAAGTGCCAAATCGGT-A-A-T-GGTAACAGTAACAA
1 TATTCGACACACAAAGTGCCAAATAGGTAACAGTAGGTAACAGTAACAA
*
74223152 TATTCGACACACAAAGTGCCGAATCA-GTAAC-G-A--TAACAGTAACAA
1 TATTCGACACACAAAGTGCCAAAT-AGGTAACAGTAGGTAACAGTAACAA
* * *
74223197 TATTCGACATACAAAGTGCTAAATCGGTAA
1 TATTCGACACACAAAGTGCCAAATAGGTAA
74223227 TGGTAGCAGT
Statistics
Matches: 105, Mismatches: 9, Indels: 18
0.80 0.07 0.14
Matches are distributed among these distances:
45 76 0.72
46 1 0.01
48 1 0.01
49 1 0.01
50 1 0.01
51 25 0.24
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.20
Consensus pattern (49 bp):
TATTCGACACACAAAGTGCCAAATAGGTAACAGTAGGTAACAGTAACAA
Found at i:74223144 original size:45 final size:45
Alignment explanation
Indices: 74223088--74223237 Score: 228
Period size: 45 Copynumber: 3.3 Consensus size: 45
74223078 ATAGGTAACA
*
74223088 GTAAAGGTAACAGTAACAATATTCGACACACAAAGTGCCAAATCG
1 GTAATGGTAACAGTAACAATATTCGACACACAAAGTGCCAAATCG
* *
74223133 GTAATGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCA
1 GTAATGGTAACAGTAACAATATTCGACACACAAAGTGCCAAATCG
* * * *
74223178 GTAACGATAACAGTAACAATATTCGACATACAAAGTGCTAAATCG
1 GTAATGGTAACAGTAACAATATTCGACACACAAAGTGCCAAATCG
*
74223223 GTAATGGTAGCAGTA
1 GTAATGGTAACAGTA
74223238 GTGGTAACAG
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.21
Consensus pattern (45 bp):
GTAATGGTAACAGTAACAATATTCGACACACAAAGTGCCAAATCG
Found at i:74226384 original size:8 final size:8
Alignment explanation
Indices: 74226342--74226366 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
74226332 ATATAGACTA
74226342 AATAAAAT
1 AATAAAAT
74226350 AATAAAAT
1 AATAAAAT
74226358 AATAAAAT
1 AATAAAAT
74226366 A
1 A
74226367 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:74226390 original size:29 final size:31
Alignment explanation
Indices: 74226339--74226411 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 31
74226329 TATATATAGA
*
74226339 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAATAATTAT
* *
74226368 CTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAATTAT
74226399 CTAATT-AAATAAT
1 CTAATTAAAATAAT
74226412 TATAAAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
28 6 0.17
29 14 0.39
30 6 0.17
31 10 0.28
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAATTAT
Found at i:74226416 original size:29 final size:30
Alignment explanation
Indices: 74226346--74226417 Score: 71
Period size: 31 Copynumber: 2.4 Consensus size: 30
74226336 AGACTAAATA
*
74226346 AAATAA-TA-AAATAATAAAATATCTTATT
1 AAATAATTATAAATAATAAAATATCTAATT
*
74226374 AAA-ATATTAAATAAATAAT-AATTATCTAATT
1 AAATA-ATT--ATAAATAATAAAATATCTAATT
74226405 AAATAATTATAAA
1 AAATAATTATAAA
74226418 ATATCACCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
27 1 0.03
28 4 0.11
29 6 0.17
31 17 0.47
32 8 0.22
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (30 bp):
AAATAATTATAAATAATAAAATATCTAATT
Found at i:74226794 original size:14 final size:14
Alignment explanation
Indices: 74226775--74226801 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
74226765 GACATAACTC
74226775 AATTTTCCTCTTCA
1 AATTTTCCTCTTCA
74226789 AATTTTCCTCTTC
1 AATTTTCCTCTTC
74226802 TTGTCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.30, G:0.00, T:0.52
Consensus pattern (14 bp):
AATTTTCCTCTTCA
Found at i:74232209 original size:13 final size:13
Alignment explanation
Indices: 74232193--74232218 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74232183 TTAAATTACT
74232193 TAATTAATCTTTA
1 TAATTAATCTTTA
74232206 TAATTAATCTTTA
1 TAATTAATCTTTA
74232219 ATATAGTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
TAATTAATCTTTA
Found at i:74234730 original size:29 final size:31
Alignment explanation
Indices: 74234667--74234737 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 31
74234657 ATGTTAATAG
* *
74234667 GTGACTGATTTGTCACTTTTTGATAACGTTA
1 GTGACTAATTTGTCACTTTTTGATAAAGTTA
74234698 GTGACTAATTTGTCA-TTTTT-A-AAAGTTGA
1 GTGACTAATTTGTCACTTTTTGATAAAGTT-A
74234727 GTGACTGAATT
1 GTGACT-AATT
74234738 GAAATCAGAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
28 5 0.14
29 8 0.22
30 9 0.25
31 14 0.39
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.44
Consensus pattern (31 bp):
GTGACTAATTTGTCACTTTTTGATAAAGTTA
Found at i:74241319 original size:19 final size:19
Alignment explanation
Indices: 74241295--74241331 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
74241285 AATGTTTGGT
*
74241295 TGGAATGAATCTCGTTCCA
1 TGGAATGAATCTCATTCCA
74241314 TGGAATGAATCTCATTCC
1 TGGAATGAATCTCATTCC
74241332 TCCCTTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (19 bp):
TGGAATGAATCTCATTCCA
Found at i:74250692 original size:46 final size:47
Alignment explanation
Indices: 74250618--74250787 Score: 130
Period size: 46 Copynumber: 3.6 Consensus size: 47
74250608 ACATATCAAA
* ** *
74250618 CCGATGCAATGTCTCAGAAATGGTCTTACACTAGCTTGCACA-ACGCGG
1 CCGATGC-ATGTCCCAGAAAT-GTCTTACACTAGCACGCACACACGAGG
** * * *
74250666 TTGATGCATGTCCCAGATATGTCTTACACTAGCACGCATATCTCGAGG
1 CCGATGCATGTCCCAGAAATGTCTTACACTAGCACGCACA-CACGAGG
* * * * * * *
74250714 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCA--AAG
1 CCGATGCATGTCCCAGAAATGTCTTACACTAGCACGC-ACACACGAGG
*
74250760 CCGATGCATGTCCCAGACATGTCTTACA
1 CCGATGCATGTCCCAGAAATGTCTTACA
74250788 TAGACACACA
Statistics
Matches: 99, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 47 0.47
47 11 0.11
48 41 0.41
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (47 bp):
CCGATGCATGTCCCAGAAATGTCTTACACTAGCACGCACACACGAGG
Found at i:74250728 original size:48 final size:48
Alignment explanation
Indices: 74250668--74250801 Score: 166
Period size: 46 Copynumber: 2.8 Consensus size: 48
74250658 CAACGCGGTT
* * * *
74250668 GATGCATGTCCCAGATATGTCTTACACTAGCACGCATATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACATATCTCAAAGCC
* * * *
74250716 GATGCATGTCCCAGACATGTCTTACACTGGCTCTC--GTCTCAAAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACATATCTCAAAGCC
74250762 GATGCATGTCCCAGACATGTCTTACA-TAGACACACATATC
1 GATGCATGTCCCAGACATGTCTTACACTAG-CACACATATC
74250802 ACCTGCACTG
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
45 2 0.03
46 37 0.51
48 33 0.46
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACACATATCTCAAAGCC
Found at i:74253395 original size:21 final size:20
Alignment explanation
Indices: 74253356--74253395 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
74253346 ACATGCACTT
* *
74253356 ATAAAATCATATTATAACAC
1 ATAAAATAATATTAAAACAC
74253376 ATAAAATAATCATTAAAACA
1 ATAAAATAAT-ATTAAAACA
74253396 ATTTATTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAAAATAATATTAAAACAC
Found at i:74258843 original size:6 final size:6
Alignment explanation
Indices: 74258832--74258878 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
74258822 AGCAACTCAA
*
74258832 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTATATAT ATTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT-T-TAT TTTTAT TTT
74258879 CTTTATTTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 31 0.84
7 2 0.05
8 4 0.11
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:74266440 original size:20 final size:20
Alignment explanation
Indices: 74266412--74266460 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
74266402 TTTTTTTTAT
*
74266412 TTTTCTTTTATTATTTATTA
1 TTTTATTTTATTATTTATTA
*
74266432 TTTTATTTTATTGTTTATTA
1 TTTTATTTTATTATTTATTA
*
74266452 CTTTATTTT
1 TTTTATTTT
74266461 GTTTGGATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTATTTTATTATTTATTA
Found at i:74267763 original size:14 final size:14
Alignment explanation
Indices: 74267746--74267777 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
74267736 AAAAAAAGAG
*
74267746 AAAAAAATAAAAAT
1 AAAAAAATAAAAAC
74267760 AAAAAAATAAAAAC
1 AAAAAAATAAAAAC
74267774 AAAA
1 AAAA
74267778 GAAACGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.88, C:0.03, G:0.00, T:0.09
Consensus pattern (14 bp):
AAAAAAATAAAAAC
Found at i:74276173 original size:25 final size:23
Alignment explanation
Indices: 74276154--74276220 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 23
74276144 TTTCCTATTA
* *
74276154 TATGGTTCTTGTGAGCTTCCCAT
1 TATGGCTCTTATGAGCTTCCCAT
74276177 TATGGCTCTTATGAGCTTCCCGAT
1 TATGGCTCTTATGAGCTTCCC-AT
*
74276201 AATTGGCTCTTCA-GAGCTTC
1 TA-TGGCTCTT-ATGAGCTTC
74276221 TCGATAACTG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 19 0.50
24 3 0.08
25 15 0.39
26 1 0.03
ACGTcount: A:0.16, C:0.24, G:0.21, T:0.39
Consensus pattern (23 bp):
TATGGCTCTTATGAGCTTCCCAT
Found at i:74276186 original size:23 final size:24
Alignment explanation
Indices: 74276154--74276260 Score: 83
Period size: 25 Copynumber: 4.4 Consensus size: 24
74276144 TTTCCTATTA
* *
74276154 TATGGTTCTTGTGAGCTTCCC-AT
1 TATGGCTCTTATGAGCTTCCCGAT
74276177 TATGGCTCTTATGAGCTTCCCGAT
1 TATGGCTCTTATGAGCTTCCCGAT
* *
74276201 AATTGGCTCTTCA-GAGCTTCTCGAT
1 TA-TGGCTCTT-ATGAGCTTCCCGAT
* * * * *
74276226 AACTGGCTATTATGAGTTTACCTAT
1 TA-TGGCTCTTATGAGCTTCCCGAT
74276251 TAATGGCTCT
1 T-ATGGCTCT
74276261 CCAGAGCTTC
Statistics
Matches: 67, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
23 19 0.28
24 4 0.06
25 42 0.63
26 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (24 bp):
TATGGCTCTTATGAGCTTCCCGAT
Found at i:74276225 original size:25 final size:25
Alignment explanation
Indices: 74276179--74276282 Score: 83
Period size: 25 Copynumber: 4.2 Consensus size: 25
74276169 CTTCCCATTA
*
74276179 TGGCTCTTATGAGCTTCCCGATAAT
1 TGGCTCTTATGAGCTTCTCGATAAT
*
74276204 TGGCTCTTCA-GAGCTTCTCGATAAC
1 TGGCTCTT-ATGAGCTTCTCGATAAT
* * *
74276229 TGGCTATTATGAGTTTAC-CTATTAA-
1 TGGCTCTTATGAGCTT-CTCGA-TAAT
*
74276254 TGGCTCTCCA-GAGCTTCTCGAT-AT
1 TGGCTCT-TATGAGCTTCTCGATAAT
74276278 TGGCT
1 TGGCT
74276283 TACTTGAACT
Statistics
Matches: 63, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
23 1 0.02
24 8 0.13
25 48 0.76
26 6 0.10
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (25 bp):
TGGCTCTTATGAGCTTCTCGATAAT
Found at i:74276239 original size:50 final size:50
Alignment explanation
Indices: 74276179--74276276 Score: 135
Period size: 50 Copynumber: 2.0 Consensus size: 50
74276169 CTTCCCATTA
* * *
74276179 TGGCTCTTATGAGCTTCCCGA-TAATTGGCTCTTCAGAGCTTCTCGATAAC
1 TGGCTATTATGAGCTTACCGATTAA-TGGCTCTCCAGAGCTTCTCGATAAC
* *
74276229 TGGCTATTATGAGTTTACCTATTAATGGCTCTCCAGAGCTTCTCGATA
1 TGGCTATTATGAGCTTACCGATTAATGGCTCTCCAGAGCTTCTCGATA
74276277 TTGGCTTACT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 39 0.93
51 3 0.07
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (50 bp):
TGGCTATTATGAGCTTACCGATTAATGGCTCTCCAGAGCTTCTCGATAAC
Found at i:74276318 original size:24 final size:24
Alignment explanation
Indices: 74276264--74276319 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
74276254 TGGCTCTCCA
* * *
74276264 GAGCTTCTCGATATTGGCTTACTT
1 GAGCTTCCCGATATTAGCTCACTT
*
74276288 GAACTTCCCGATATTAGCTCA-TAT
1 GAGCTTCCCGATATTAGCTCACT-T
74276312 GAGCTTCC
1 GAGCTTCC
74276320 TGTTTAAGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (24 bp):
GAGCTTCCCGATATTAGCTCACTT
Found at i:74281802 original size:29 final size:28
Alignment explanation
Indices: 74281743--74281807 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 28
74281733 ATCCCTTTTG
* *
74281743 TTTATTTAGTTATTTATTTTAAATATGA
1 TTTATTTAATTATTTATTTAAAATATGA
* *
74281771 TTTTATTTAATGTA-TTATTTAAAATCTTA
1 -TTTATTTAAT-TATTTATTTAAAATATGA
74281800 TTTATTTA
1 TTTATTTA
74281808 TTTAATTGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 8 0.26
29 21 0.68
30 2 0.06
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.62
Consensus pattern (28 bp):
TTTATTTAATTATTTATTTAAAATATGA
Found at i:74281994 original size:12 final size:12
Alignment explanation
Indices: 74281977--74282011 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
74281967 AAATTTAGAT
74281977 TTATTATTATTG
1 TTATTATTATTG
74281989 TTATTATTATTG
1 TTATTATTATTG
*
74282001 TTATCATTATT
1 TTATTATTATT
74282012 ATTTCATTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (12 bp):
TTATTATTATTG
Found at i:74287441 original size:53 final size:51
Alignment explanation
Indices: 74287377--74287567 Score: 220
Period size: 53 Copynumber: 3.6 Consensus size: 51
74287367 TTACTTCAAA
* *
74287377 AAAAAAGTTTTTGAGGTTTGGTGGAAGTAAATGTTTTGGGGAAAAGTAAAAAG
1 AAAAAAG-TTTTGAGGTTTGGGGGAAGTAAAAGTTTTGGGGAAAA-TAAAAAG
* *
74287430 AAAAATATTTTTGGGGTTTGGGGGAAGTAAAAGTTTTGGAGAGAAAATAAAAAG
1 AAAAA-AGTTTTGAGGTTTGGGGGAAGTAAAAGTTTTGG-G-GAAAATAAAAAG
* * * ** *
74287484 AAAAAAGTTTTAAGAGTTTAGGGGAAGTAAAAGTTTGGGGGGGAATAAAATG
1 AAAAAAGTTTTGAG-GTTTGGGGGAAGTAAAAGTTTTGGGGAAAATAAAAAG
74287536 AAAAAAGTTTTGAGGATTTTGGGGGAAGTAAA
1 AAAAAAGTTTTGAGG--TTTGGGGGAAGTAAA
74287568 TTTGTTAGGG
Statistics
Matches: 118, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
51 1 0.01
52 22 0.19
53 54 0.46
54 36 0.31
55 5 0.04
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.28
Consensus pattern (51 bp):
AAAAAAGTTTTGAGGTTTGGGGGAAGTAAAAGTTTTGGGGAAAATAAAAAG
Found at i:74288306 original size:23 final size:23
Alignment explanation
Indices: 74288272--74288332 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
74288262 TAAGTCTTTG
*
74288272 TATTTTTTAAAATTTTGTAAT-TT
1 TATTTTTCAAAATTTTGT-ATCTT
*
74288295 TATTTTTCAAAATTTAGTATCTT
1 TATTTTTCAAAATTTTGTATCTT
74288318 TATTTTTC-AAATTTT
1 TATTTTTCAAAATTTT
74288333 AAAATTTGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 8 0.24
23 26 0.76
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (23 bp):
TATTTTTCAAAATTTTGTATCTT
Found at i:74291682 original size:46 final size:45
Alignment explanation
Indices: 74291572--74291744 Score: 204
Period size: 46 Copynumber: 3.8 Consensus size: 45
74291562 CTCTGATATA
* * **
74291572 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCTGATGTG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGATGACATG
* * *
74291617 AAATGTGTAAGACCATGGTTGAAAGATACCATGGTAGTGTGACATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAG-ATGACATG
* *
74291663 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-G
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGC-AGATGACATG
* * *
74291708 AAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 -AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
74291745 TCACGTCAAA
Statistics
Matches: 112, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
45 38 0.34
46 73 0.65
47 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.22
Consensus pattern (45 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGATGACATG
Found at i:74291763 original size:91 final size:89
Alignment explanation
Indices: 74291579--74291767 Score: 202
Period size: 91 Copynumber: 2.1 Consensus size: 89
74291569 ATAAAATGTG
* * * * * *
74291579 TAAGACCATGGTTGAAAGATACCATGGCAGCTGATGTGAAATGTGTAAGACCATGGTTGAAAGAT
1 TAAGACCATGGTTGAAAGATACCATGGCAACTGAAGTAAAATGAGTAAGACCATAGTTGAAAGAC
* * * *
74291644 ACCATGGTAGTGTGACATGAAATGAA
66 ACCATGGCA--GTCACATAAAATAAA
74291670 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAG-AAAATGAGTAAGACCATAGTTGAAAG
1 TAAGACCATGGTTGAAAGATACCATGGCAAC-TGA-AGTAAAATGAGTAAGACCATAGTTGAAAG
* *
74291734 ACACTATGGCA-TCACGTCAAAGATAAA
64 ACACCATGGCAGTCACAT-AAA-ATAAA
74291761 TAAGACC
1 TAAGACC
74291768 GTGGAAGAGA
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
89 4 0.05
90 2 0.02
91 41 0.50
92 34 0.41
93 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (89 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACTGAAGTAAAATGAGTAAGACCATAGTTGAAAGAC
ACCATGGCAGTCACATAAAATAAA
Found at i:74301410 original size:14 final size:14
Alignment explanation
Indices: 74301391--74301430 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
74301381 TTGATTGCCA
74301391 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
74301405 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
74301419 GGAAAATGTTTT
1 GTAAAATGTTTT
74301431 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:74301439 original size:20 final size:20
Alignment explanation
Indices: 74301414--74301453 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
74301404 CGTAAAATGA
*
74301414 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
74301434 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
74301454 GAAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:74301443 original size:34 final size:35
Alignment explanation
Indices: 74301399--74301465 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
74301389 CAGTAAAATG
* *
74301399 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
*
74301433 TTTTCTGTAAAATGATTTACTGAAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTT
74301466 CTGGTGTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
Found at i:74306278 original size:11 final size:11
Alignment explanation
Indices: 74306243--74306279 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
74306233 GACAAGTGAG
74306243 TTTATATTTGCT
1 TTTAT-TTTGCT
*
74306255 TCTATTTTGCT
1 TTTATTTTGCT
74306266 TTTATTTTGCT
1 TTTATTTTGCT
74306277 TTT
1 TTT
74306280 CATGCAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.11, C:0.11, G:0.08, T:0.70
Consensus pattern (11 bp):
TTTATTTTGCT
Found at i:74312679 original size:7 final size:7
Alignment explanation
Indices: 74312667--74313300 Score: 1268
Period size: 7 Copynumber: 90.6 Consensus size: 7
74312657 AGTCGTTTCA
74312667 TATTTAG
1 TATTTAG
74312674 TATTTAG
1 TATTTAG
74312681 TATTTAG
1 TATTTAG
74312688 TATTTAG
1 TATTTAG
74312695 TATTTAG
1 TATTTAG
74312702 TATTTAG
1 TATTTAG
74312709 TATTTAG
1 TATTTAG
74312716 TATTTAG
1 TATTTAG
74312723 TATTTAG
1 TATTTAG
74312730 TATTTAG
1 TATTTAG
74312737 TATTTAG
1 TATTTAG
74312744 TATTTAG
1 TATTTAG
74312751 TATTTAG
1 TATTTAG
74312758 TATTTAG
1 TATTTAG
74312765 TATTTAG
1 TATTTAG
74312772 TATTTAG
1 TATTTAG
74312779 TATTTAG
1 TATTTAG
74312786 TATTTAG
1 TATTTAG
74312793 TATTTAG
1 TATTTAG
74312800 TATTTAG
1 TATTTAG
74312807 TATTTAG
1 TATTTAG
74312814 TATTTAG
1 TATTTAG
74312821 TATTTAG
1 TATTTAG
74312828 TATTTAG
1 TATTTAG
74312835 TATTTAG
1 TATTTAG
74312842 TATTTAG
1 TATTTAG
74312849 TATTTAG
1 TATTTAG
74312856 TATTTAG
1 TATTTAG
74312863 TATTTAG
1 TATTTAG
74312870 TATTTAG
1 TATTTAG
74312877 TATTTAG
1 TATTTAG
74312884 TATTTAG
1 TATTTAG
74312891 TATTTAG
1 TATTTAG
74312898 TATTTAG
1 TATTTAG
74312905 TATTTAG
1 TATTTAG
74312912 TATTTAG
1 TATTTAG
74312919 TATTTAG
1 TATTTAG
74312926 TATTTAG
1 TATTTAG
74312933 TATTTAG
1 TATTTAG
74312940 TATTTAG
1 TATTTAG
74312947 TATTTAG
1 TATTTAG
74312954 TATTTAG
1 TATTTAG
74312961 TATTTAG
1 TATTTAG
74312968 TATTTAG
1 TATTTAG
74312975 TATTTAG
1 TATTTAG
74312982 TATTTAG
1 TATTTAG
74312989 TATTTAG
1 TATTTAG
74312996 TATTTAG
1 TATTTAG
74313003 TATTTAG
1 TATTTAG
74313010 TATTTAG
1 TATTTAG
74313017 TATTTAG
1 TATTTAG
74313024 TATTTAG
1 TATTTAG
74313031 TATTTAG
1 TATTTAG
74313038 TATTTAG
1 TATTTAG
74313045 TATTTAG
1 TATTTAG
74313052 TATTTAG
1 TATTTAG
74313059 TATTTAG
1 TATTTAG
74313066 TATTTAG
1 TATTTAG
74313073 TATTTAG
1 TATTTAG
74313080 TATTTAG
1 TATTTAG
74313087 TATTTAG
1 TATTTAG
74313094 TATTTAG
1 TATTTAG
74313101 TATTTAG
1 TATTTAG
74313108 TATTTAG
1 TATTTAG
74313115 TATTTAG
1 TATTTAG
74313122 TATTTAG
1 TATTTAG
74313129 TATTTAG
1 TATTTAG
74313136 TATTTAG
1 TATTTAG
74313143 TATTTAG
1 TATTTAG
74313150 TATTTAG
1 TATTTAG
74313157 TATTTAG
1 TATTTAG
74313164 TATTTAG
1 TATTTAG
74313171 TATTTAG
1 TATTTAG
74313178 TATTTAG
1 TATTTAG
74313185 TATTTAG
1 TATTTAG
74313192 TATTTAG
1 TATTTAG
74313199 TATTTAG
1 TATTTAG
74313206 TATTTAG
1 TATTTAG
74313213 TATTTAG
1 TATTTAG
74313220 TATTTAG
1 TATTTAG
74313227 TATTTAG
1 TATTTAG
74313234 TATTTAG
1 TATTTAG
74313241 TATTTAG
1 TATTTAG
74313248 TATTTAG
1 TATTTAG
74313255 TATTTAG
1 TATTTAG
74313262 TATTTAG
1 TATTTAG
74313269 TATTTAG
1 TATTTAG
74313276 TATTTAG
1 TATTTAG
74313283 TATTTAG
1 TATTTAG
74313290 TATTTAG
1 TATTTAG
74313297 TATT
1 TATT
74313301 ATTATATAAC
Statistics
Matches: 627, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 627 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (7 bp):
TATTTAG
Found at i:74317213 original size:30 final size:31
Alignment explanation
Indices: 74317166--74317224 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
74317156 CACCCTTAAA
* *
74317166 ATATTTGCACTATTAATCCTTCAACTTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTTC
74317197 ATATTTACACT-TTAATCCTTCAAATTTT
1 ATATTTACACTATTAATCCTTCAAATTTT
74317225 GAGTATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.29, C:0.20, G:0.02, T:0.49
Consensus pattern (31 bp):
ATATTTACACTATTAATCCTTCAAATTTTTC
Found at i:74317232 original size:30 final size:31
Alignment explanation
Indices: 74317166--74317234 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 31
74317156 CACCCTTAAA
* *
74317166 ATATTTGCACTATTAATCCTTCAACTTTTTC
1 ATATTTACACTATTAATCCTTCAACATTTTC
*
74317197 ATATTTACACT-TTAATCCTTCAA-ATTTTG
1 ATATTTACACTATTAATCCTTCAACATTTTC
74317226 AGTATTTAC
1 A-TATTTAC
74317235 TTTTAGGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 5 0.15
30 19 0.56
31 10 0.29
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.48
Consensus pattern (31 bp):
ATATTTACACTATTAATCCTTCAACATTTTC
Found at i:74318361 original size:25 final size:24
Alignment explanation
Indices: 74318303--74318357 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
74318293 CGGACTTATA
74318303 AAAAATCTTAGGAACTAAACATGC
1 AAAAATCTTAGGAACTAAACATGC
74318327 AAAAATCTTAGGAACTAAACATGC
1 AAAAATCTTAGGAACTAAACATGC
74318351 AAAAATC
1 AAAAATC
74318358 CTTAACCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.53, C:0.16, G:0.11, T:0.20
Consensus pattern (24 bp):
AAAAATCTTAGGAACTAAACATGC
Found at i:74323156 original size:26 final size:25
Alignment explanation
Indices: 74323125--74323175 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
74323115 GAGAAAGTGA
*
74323125 TGATGACGACGACGACGACGATGAT
1 TGATGACGACAACGACGACGATGAT
74323150 NTGATGACGACAACGACGACGATGAT
1 -TGATGACGACAACGACGACGATGAT
74323176 GGTGATGATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.29, T:0.16
Consensus pattern (25 bp):
TGATGACGACAACGACGACGATGAT
Found at i:74324631 original size:74 final size:75
Alignment explanation
Indices: 74324461--74324656 Score: 308
Period size: 75 Copynumber: 2.6 Consensus size: 75
74324451 GAGATTTATT
*
74324461 TTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGACTTTCTTTTCTCTGATTTTGAG
1 TTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGACTTTCTTTTCTCTGATTTTGAA
74324526 CATAAAAAAG
66 CATAAAAAAG
* *
74324536 TTTTCAATTGAGGACATAAAACACTCCAATTGACAAGGAAGGAC-TTCTTCTTCT-T-ATTTTGA
1 TTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGACTTTCTT-TTCTCTGATTTTGA
*
74324598 ACATAACAAAG
65 ACATAAAAAAG
*
74324609 ATTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGGCTTT
1 -TTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGACTTT
74324657 TCCAATTTTA
Statistics
Matches: 111, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
73 16 0.14
74 47 0.42
75 48 0.43
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (75 bp):
TTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGACTTTCTTTTCTCTGATTTTGAA
CATAAAAAAG
Found at i:74327392 original size:23 final size:22
Alignment explanation
Indices: 74327340--74327392 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
74327330 CGGTTGTTCC
*
74327340 ATAATTTTATTTGATTGTTTTT
1 ATAATTTTATTAGATTGTTTTT
* *
74327362 ATATTTTTCATTAGTTTGTTTTT
1 ATAATTTT-ATTAGATTGTTTTT
*
74327385 GTAATTTT
1 ATAATTTT
74327393 GCTTCAATTG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.21, C:0.02, G:0.09, T:0.68
Consensus pattern (22 bp):
ATAATTTTATTAGATTGTTTTT
Found at i:74330648 original size:9 final size:9
Alignment explanation
Indices: 74330631--74330699 Score: 52
Period size: 9 Copynumber: 7.4 Consensus size: 9
74330621 GGCTGACTCA
74330631 TATTATTTT
1 TATTATTTT
74330640 TATT-TTTT
1 TATTATTTT
* *
74330648 TAAATATTTA
1 T-ATTATTTT
74330658 TATTATTTT
1 TATTATTTT
*
74330667 AATTAATATTT
1 TATT-AT-TTT
*
74330678 AATTA-TTT
1 TATTATTTT
74330686 TATATATTTT
1 TAT-TATTTT
74330696 TATT
1 TATT
74330700 GAAAATTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
8 10 0.21
9 18 0.38
10 13 0.27
11 7 0.15
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TATTATTTT
Found at i:74349994 original size:21 final size:21
Alignment explanation
Indices: 74349970--74350014 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
74349960 AAATTGTGAC
74349970 AATCAATTTAATTCTTCATAA
1 AATCAATTTAATTCTTCATAA
*
74349991 AATCTATTTAATTCTTCATAA
1 AATCAATTTAATTCTTCATAA
74350012 AAT
1 AAT
74350015 TTTAACAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.44
Consensus pattern (21 bp):
AATCAATTTAATTCTTCATAA
Found at i:74352296 original size:3 final size:3
Alignment explanation
Indices: 74352290--74352617 Score: 101
Period size: 3 Copynumber: 111.7 Consensus size: 3
74352280 GATGATGATG
* ** ** *
74352290 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A AGA GCA GCA A-A A-A AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
74352335 AGTA CTA AAA ATA ATA TTA ACA GTA ATA ATA ATG GTA ATA ATAA ATA
1 A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* * * * *
74352382 ATG GTA AAA ATA ATA ATA ATA ATA ATA GTA A-A ATA AT- ATA TTA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
74352427 TTA GTTA AT- ATA ATA ATA A-A A-A ATA GTG ATAA ATA TATA A-A ATA
1 ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA -ATA ATA ATA
* * * * *
74352471 ATA GTA ACA GTA ATA A-A ATA A-A TATA ATA ATA ACA ATA AGA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
* * ** * * * *
74352515 AAA ATA AT- ATC ACG TTA CTA ATG ATA ATA ATA ATA ATA ATTA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
** * * * *
74352560 ATA ATA TATA ATA ATA ACG GTA ATA A-A ATA ATA ATA GTG ACA ATA
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
74352605 TTA A-A ATA ATA AT
1 ATA ATA ATA ATA AT
74352618 CTTAAAATAG
Statistics
Matches: 233, Mismatches: 71, Indels: 42
0.67 0.21 0.12
Matches are distributed among these distances:
2 28 0.12
3 187 0.80
4 18 0.08
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:74352418 original size:20 final size:20
Alignment explanation
Indices: 74352393--74352615 Score: 83
Period size: 20 Copynumber: 10.8 Consensus size: 20
74352383 TGGTAAAAAT
74352393 AATAATAATAATAATAGTAA
1 AATAATAATAATAATAGTAA
*
74352413 AATAATATATTAA-ATTAGTTAA
1 AATAATA-A-TAATAATAG-TAA
* *
74352435 TATAATAATAAAAAATAGTGATA
1 AATAATAAT-AATAATAGT-A-A
74352458 AATATATAA-AATAATAGTAA
1 AATA-ATAATAATAATAGTAA
*
74352478 CAGTAATAA-AATAAATA-TAA
1 -AATAATAATAAT-AATAGTAA
* *
74352498 TAATAACAATAAGAATA--AA
1 -AATAATAATAATAATAGTAA
* *
74352517 AATAATATCACGTTACTAAT-G-AT
1 AATAATA--A---TAATAATAGTAA
74352540 AATAATAATAATAATTAGTAA
1 AATAATAATAATAA-TAGTAA
**
74352561 TAATATATAATAATAACGGT--
1 -AATA-ATAATAATAATAGTAA
*
74352581 AATAA-AATAATAATAGTGAC
1 AATAATAATAATAATAGT-AA
*
74352601 AATATTAA-AATAATA
1 AATAATAATAATAATA
74352616 ATCTTAAAAT
Statistics
Matches: 156, Mismatches: 21, Indels: 52
0.68 0.09 0.23
Matches are distributed among these distances:
17 10 0.06
18 12 0.08
19 7 0.04
20 42 0.27
21 23 0.15
22 31 0.20
23 27 0.17
24 4 0.03
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (20 bp):
AATAATAATAATAATAGTAA
Found at i:74352453 original size:22 final size:22
Alignment explanation
Indices: 74352370--74352475 Score: 76
Period size: 22 Copynumber: 4.8 Consensus size: 22
74352360 ATAATAATGG
* * *
74352370 TAATAATAAATAATGGTAAAAA
1 TAATAATAAAAAATAGTTAAAA
74352392 TAATAATAATAATAATAG-TAAAA
1 TAATAATAA-AA-AATAGTTAAAA
* * *
74352415 TAAT-ATATTAAATTAGTTAATA
1 TAATAATA-AAAAATAGTTAAAA
*
74352437 TAATAATAAAAAATAGTGATAAA
1 TAATAATAAAAAATAGTTA-AAA
74352460 T-AT-ATAAAATAATAGT
1 TAATAATAAAA-AATAGT
74352476 AACAGTAATA
Statistics
Matches: 67, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
21 10 0.15
22 38 0.57
23 15 0.22
24 4 0.06
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (22 bp):
TAATAATAAAAAATAGTTAAAA
Found at i:74352575 original size:10 final size:10
Alignment explanation
Indices: 74352538--74352575 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
74352528 GTTACTAATG
74352538 ATAATAATA-
1 ATAATAATAT
74352547 ATAATAAT-T
1 ATAATAATAT
74352556 AGTAATAATAT
1 A-TAATAATAT
74352567 ATAATAATA
1 ATAATAATA
74352576 ACGGTAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.35
10 15 0.58
11 2 0.08
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (10 bp):
ATAATAATAT
Found at i:74353964 original size:23 final size:23
Alignment explanation
Indices: 74353932--74353975 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
74353922 ACTACCATTT
74353932 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
74353955 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
74353976 ATAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:74353968 original size:13 final size:11
Alignment explanation
Indices: 74353936--74353978 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
74353926 CCATTTTCTA
*
74353936 AATAAAATAAT
1 AATAAAATATT
74353947 AAT-AAATATCT
1 AATAAAATAT-T
74353958 AAGTAAAATATT
1 AA-TAAAATATT
74353970 AATAAAATA
1 AATAAAATA
74353979 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:74355155 original size:20 final size:19
Alignment explanation
Indices: 74355130--74355181 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
74355120 TGATTTTTGA
*
74355130 TAAAATTAATTATAATCAAG
1 TAAAATTAA-AATAATCAAG
*
74355150 TAAAATTAAAATAATCAAA
1 TAAAATTAAAATAATCAAG
*
74355169 T-TAATTAAAATAA
1 TAAAATTAAAATAA
74355182 ATATGATATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 11 0.38
19 9 0.31
20 9 0.31
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAAATTAAAATAATCAAG
Found at i:74355670 original size:31 final size:30
Alignment explanation
Indices: 74355628--74355732 Score: 104
Period size: 31 Copynumber: 3.4 Consensus size: 30
74355618 AATATTAAAT
*
74355628 TTAATTCAATATTTATCTAAATAGTATTTTA
1 TTAATTTAATATTTATCTAAATA-TATTTTA
* * * * **
74355659 TTAATTGAATATTAATATGAA-ATATTAAA
1 TTAATTTAATATTTATCTAAATATATTTTA
*
74355688 TTTAATTTAATATTTATCTAGATATTATTTTA
1 -TTAATTTAATATTTATCTAAATA-TATTTTA
74355720 TTAATTTAATATT
1 TTAATTTAATATT
74355733 AATGTGATTA
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
29 5 0.09
30 17 0.29
31 31 0.53
32 5 0.09
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (30 bp):
TTAATTTAATATTTATCTAAATATATTTTA
Found at i:74355693 original size:61 final size:61
Alignment explanation
Indices: 74355618--74355735 Score: 200
Period size: 61 Copynumber: 1.9 Consensus size: 61
74355608 TAATAAATTT
74355618 AATATTAAATTTAATTCAATATTTATCTAAATAGTATTTTATTAATTGAATATTAATATGA
1 AATATTAAATTTAATTCAATATTTATCTAAATAGTATTTTATTAATTGAATATTAATATGA
* * * *
74355679 AATATTAAATTTAATTTAATATTTATCTAGATATTATTTTATTAATTTAATATTAAT
1 AATATTAAATTTAATTCAATATTTATCTAAATAGTATTTTATTAATTGAATATTAAT
74355736 GTGATTAATT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (61 bp):
AATATTAAATTTAATTCAATATTTATCTAAATAGTATTTTATTAATTGAATATTAATATGA
Found at i:74355821 original size:12 final size:12
Alignment explanation
Indices: 74355804--74355837 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
74355794 ATTTCAAGAA
74355804 ATTATTCTCAAC
1 ATTATTCTCAAC
74355816 ATTATTCTCAAC
1 ATTATTCTCAAC
74355828 ATTATTCTCA
1 ATTATTCTCA
74355838 TACACTTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (12 bp):
ATTATTCTCAAC
Found at i:74358242 original size:117 final size:117
Alignment explanation
Indices: 74358055--74358282 Score: 420
Period size: 117 Copynumber: 1.9 Consensus size: 117
74358045 TAAGAGACAA
*
74358055 AACTCAAAATTAAGATCTGCTAATTTTCCCTGAAACTAGACTTACATATATTATTACCATAAAAT
1 AACTCAAAATTAAGATCCGCTAATTTTCCCTGAAACTAGACTTACATATATTATTACCATAAAAT
*
74358120 TTTCAGAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTGCC
66 TTTCAGAATTTTTGGTTTAGCCAATAAATACAGTTTATTCTTTAAAGTTGCC
* *
74358172 AACTCGAAATTAAGATCCGCTAATTTTCCCTGAAACTAGACTTACTTATATTATTACCATAAAAT
1 AACTCAAAATTAAGATCCGCTAATTTTCCCTGAAACTAGACTTACATATATTATTACCATAAAAT
74358237 TTTCAGAATTTTTGGTTTAGCCAATAAATACAGTTTATTCTTTAAA
66 TTTCAGAATTTTTGGTTTAGCCAATAAATACAGTTTATTCTTTAAA
74358283 CTTATCCCTG
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 107 1.00
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.39
Consensus pattern (117 bp):
AACTCAAAATTAAGATCCGCTAATTTTCCCTGAAACTAGACTTACATATATTATTACCATAAAAT
TTTCAGAATTTTTGGTTTAGCCAATAAATACAGTTTATTCTTTAAAGTTGCC
Found at i:74359145 original size:20 final size:20
Alignment explanation
Indices: 74359120--74359159 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
74359110 CCAGCTTAAG
74359120 GGAACTCTTCCATGGTGTTT
1 GGAACTCTTCCATGGTGTTT
*
74359140 GGAACTCTTGCATGGTGTTT
1 GGAACTCTTCCATGGTGTTT
74359160 TTTCTGATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.17, G:0.28, T:0.40
Consensus pattern (20 bp):
GGAACTCTTCCATGGTGTTT
Found at i:74363291 original size:21 final size:20
Alignment explanation
Indices: 74363261--74363308 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
74363251 TTAAGAATTG
* *
74363261 TTTTAGTATTATTTTTATTT
1 TTTTAATATTATTTTTATGT
*
74363281 ATTTTAATATTTGTTTTTATGT
1 -TTTTAATA-TTATTTTTATGT
74363303 TTTTAA
1 TTTTAA
74363309 ATATATTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (20 bp):
TTTTAATATTATTTTTATGT
Found at i:74366377 original size:14 final size:14
Alignment explanation
Indices: 74366345--74366378 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
74366335 ATATTTTCAA
74366345 AATATTAAAATATG
1 AATATTAAAATATG
74366359 AATATATAAAATATG
1 AATAT-TAAAATATG
74366374 -ATATT
1 AATATT
74366379 TTACTAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 9 0.47
15 9 0.47
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (14 bp):
AATATTAAAATATG
Found at i:74372411 original size:23 final size:23
Alignment explanation
Indices: 74372379--74372425 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
74372369 TCTAATAGGC
74372379 ATTTAACTAACATGCATGAATGT
1 ATTTAACTAACATGCATGAATGT
* * *
74372402 ATTTATCTAAGATGCATGTATGT
1 ATTTAACTAACATGCATGAATGT
74372425 A
1 A
74372426 CTAGGTATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (23 bp):
ATTTAACTAACATGCATGAATGT
Found at i:74374569 original size:20 final size:20
Alignment explanation
Indices: 74374546--74374588 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
74374536 TTTCTTTTTA
*
74374546 ATTGTTAATATTTA-TTAATT
1 ATTGTTAA-ATTTAGTTAAAT
74374566 ATTGTTAAATTTAGTTAAAT
1 ATTGTTAAATTTAGTTAAAT
74374586 ATT
1 ATT
74374589 TTGAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
ATTGTTAAATTTAGTTAAAT
Found at i:74379314 original size:22 final size:21
Alignment explanation
Indices: 74379273--74379314 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
74379263 ATGTTAGTGA
*
74379273 TATTTTATATTATTTAATTAT
1 TATTTTATAATATTTAATTAT
*
74379294 TATTTTAATAATATTTTATTA
1 TATTTT-ATAATATTTAATTA
74379315 ATTAAATTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TATTTTATAATATTTAATTAT
Found at i:74381760 original size:15 final size:15
Alignment explanation
Indices: 74381740--74381769 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
74381730 TACCTATTAT
74381740 AATCCAAGTATAAAA
1 AATCCAAGTATAAAA
74381755 AATCCAAGTATAAAA
1 AATCCAAGTATAAAA
74381770 TATGTGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (15 bp):
AATCCAAGTATAAAA
Found at i:74393892 original size:154 final size:154
Alignment explanation
Indices: 74393612--74393918 Score: 605
Period size: 154 Copynumber: 2.0 Consensus size: 154
74393602 CTAGAAAAGA
74393612 TGGAAAGCCAGCAGCCGTCTGAATAAGTTGAGAAGCATTCAAGCAATAAGCCGTTAGAGAAAATT
1 TGGAAAGCCAGCAGCCGTCTGAATAAGTTGAGAAGCATTCAAGCAATAAGCCGTTAGAGAAAATT
74393677 AAAATGCAAAGCTTTGTATTCCCTTTTCTTTTGTTTAAGGTGCAATGTATAGAAATGAAGGATGA
66 AAAATGCAAAGCTTTGTATTCCCTTTTCTTTTGTTTAAGGTGCAATGTATAGAAATGAAGGATGA
74393742 GGTGTTAGATGGAGCAGGCTAAGG
131 GGTGTTAGATGGAGCAGGCTAAGG
*
74393766 TGGAAAGCCAGCAGCGGTCTGAATAAGTTGAGAAGCATTCAAGCAATAAGCCGTTAGAGAAAATT
1 TGGAAAGCCAGCAGCCGTCTGAATAAGTTGAGAAGCATTCAAGCAATAAGCCGTTAGAGAAAATT
74393831 AAAATGCAAAGCTTTGTATTCCCTTTTCTTTTGTTTAAGGTGCAATGTATAGAAATGAAGGATGA
66 AAAATGCAAAGCTTTGTATTCCCTTTTCTTTTGTTTAAGGTGCAATGTATAGAAATGAAGGATGA
74393896 GGTGTTAGATGGAGCAGGCTAAG
131 GGTGTTAGATGGAGCAGGCTAAG
74393919 TAGTTGCGGA
Statistics
Matches: 152, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
154 152 1.00
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (154 bp):
TGGAAAGCCAGCAGCCGTCTGAATAAGTTGAGAAGCATTCAAGCAATAAGCCGTTAGAGAAAATT
AAAATGCAAAGCTTTGTATTCCCTTTTCTTTTGTTTAAGGTGCAATGTATAGAAATGAAGGATGA
GGTGTTAGATGGAGCAGGCTAAGG
Found at i:74394049 original size:54 final size:54
Alignment explanation
Indices: 74393967--74394076 Score: 204
Period size: 54 Copynumber: 2.0 Consensus size: 54
74393957 CTTCGTCACC
74393967 GTCAATATGAAATTTCTTGTATGCAAGAACCAAGCTCCATTATTTTCCTAAATT
1 GTCAATATGAAATTTCTTGTATGCAAGAACCAAGCTCCATTATTTTCCTAAATT
74394021 GTCAATATGAAATTTCTTGTA-GACAAGAACCAAGCTCCATTATTTTCCTAAATT
1 GTCAATATGAAATTTCTTGTATG-CAAGAACCAAGCTCCATTATTTTCCTAAATT
74394075 GT
1 GT
74394077 ATATAGATTT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
53 1 0.02
54 54 0.98
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (54 bp):
GTCAATATGAAATTTCTTGTATGCAAGAACCAAGCTCCATTATTTTCCTAAATT
Found at i:74397799 original size:139 final size:139
Alignment explanation
Indices: 74397549--74397827 Score: 558
Period size: 139 Copynumber: 2.0 Consensus size: 139
74397539 TTTTCAACTC
74397549 TTACTTCTGTCACGTTCTTAGTTAATTAGATAATTAGTTTTAGTTAAAAACATTCCTTTAATTTT
1 TTACTTCTGTCACGTTCTTAGTTAATTAGATAATTAGTTTTAGTTAAAAACATTCCTTTAATTTT
74397614 TAGGCTAGATAACAAAAATATAGTAATTACTAGTACTTTTAGTCCTTGTGGATACGATATTTCCG
66 TAGGCTAGATAACAAAAATATAGTAATTACTAGTACTTTTAGTCCTTGTGGATACGATATTTCCG
74397679 ATCTCACCA
131 ATCTCACCA
74397688 TTACTTCTGTCACGTTCTTAGTTAATTAGATAATTAGTTTTAGTTAAAAACATTCCTTTAATTTT
1 TTACTTCTGTCACGTTCTTAGTTAATTAGATAATTAGTTTTAGTTAAAAACATTCCTTTAATTTT
74397753 TAGGCTAGATAACAAAAATATAGTAATTACTAGTACTTTTAGTCCTTGTGGATACGATATTTCCG
66 TAGGCTAGATAACAAAAATATAGTAATTACTAGTACTTTTAGTCCTTGTGGATACGATATTTCCG
74397818 ATCTCACCA
131 ATCTCACCA
74397827 T
1 T
74397828 AACTATACTA
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
139 140 1.00
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (139 bp):
TTACTTCTGTCACGTTCTTAGTTAATTAGATAATTAGTTTTAGTTAAAAACATTCCTTTAATTTT
TAGGCTAGATAACAAAAATATAGTAATTACTAGTACTTTTAGTCCTTGTGGATACGATATTTCCG
ATCTCACCA
Found at i:74401456 original size:14 final size:14
Alignment explanation
Indices: 74401423--74401462 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
74401413 CTACCCCCCA
74401423 CCCTTTCTTTCTTC
1 CCCTTTCTTTCTTC
**
74401437 TTCTTTCTTTCTTC
1 CCCTTTCTTTCTTC
74401451 CCCTTTCCTTTC
1 CCCTTT-CTTTC
74401463 CCTTTTCCTC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (14 bp):
CCCTTTCTTTCTTC
Found at i:74401781 original size:5 final size:6
Alignment explanation
Indices: 74401762--74401836 Score: 59
Period size: 6 Copynumber: 12.3 Consensus size: 6
74401752 TTTGAGTCTA
*
74401762 TTTATT TTTATT TTTATT TTTATCT TTT-TCGCT TTT-CT TTTATCT TTTA-T
1 TTTATT TTTATT TTTATT TTTAT-T TTTAT---T TTTATT TTTAT-T TTTATT
*
74401812 TTTATT TTTA-T TTTATG TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
74401837 ACAAACTTGT
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
5 14 0.24
6 30 0.52
7 9 0.16
8 5 0.09
ACGTcount: A:0.13, C:0.07, G:0.03, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:74401822 original size:11 final size:11
Alignment explanation
Indices: 74401762--74401837 Score: 71
Period size: 12 Copynumber: 6.4 Consensus size: 11
74401752 TTTGAGTCTA
74401762 TTTATTTTTATT
1 TTTATTTTTA-T
74401774 TTTATTTTTAT
1 TTTATTTTTAT
* *
74401785 CTTTTTCGCTTTTCT
1 -TTTAT---TTTTAT
74401800 TTTATCTTTTAT
1 TTTAT-TTTTAT
74401812 TTTATTTTTAT
1 TTTATTTTTAT
*
74401823 TTTATGTTTAT
1 TTTATTTTTAT
74401834 TTTA
1 TTTA
74401838 CAAACTTGTC
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
11 21 0.38
12 25 0.45
14 4 0.07
15 5 0.09
ACGTcount: A:0.14, C:0.07, G:0.03, T:0.76
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:74406488 original size:51 final size:49
Alignment explanation
Indices: 74406365--74406510 Score: 184
Period size: 51 Copynumber: 2.9 Consensus size: 49
74406355 TAGCCAAAGC
* * * * *
74406365 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACAAGT
**
74406414 TATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-AAGT
* * *
74406465 TATCGGGTACACATAGTATCCTGCACTTAGTACGACACACGTGACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACA
74406511 TCACAATAGA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
49 39 0.47
50 2 0.02
51 42 0.51
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACAAGT
Found at i:74414171 original size:23 final size:23
Alignment explanation
Indices: 74414144--74414206 Score: 101
Period size: 22 Copynumber: 2.8 Consensus size: 23
74414134 AATGACTCGT
74414144 GTATAAATTGATCACATGCCCGA
1 GTATAAATTGATCACATGCCCGA
* *
74414167 TTAT-AATCGATCACATGCCCGA
1 GTATAAATTGATCACATGCCCGA
74414189 GTATAAATTGATCACATG
1 GTATAAATTGATCACATG
74414207 ACTCGTGTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 20 0.57
23 15 0.43
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (23 bp):
GTATAAATTGATCACATGCCCGA
Found at i:74414569 original size:50 final size:50
Alignment explanation
Indices: 74414494--74414770 Score: 500
Period size: 50 Copynumber: 5.5 Consensus size: 50
74414484 CCATGGCAAC
74414494 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
74414544 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
74414594 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
74414644 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
74414694 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
74414744 CAAGTGAAAAGTGGTAGCTTCTGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
74414771 CTGATCAGTG
Statistics
Matches: 219, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
50 196 0.89
51 23 0.11
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:74414784 original size:31 final size:31
Alignment explanation
Indices: 74414746--74414832 Score: 147
Period size: 31 Copynumber: 2.8 Consensus size: 31
74414736 ACAAATGACA
*
74414746 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
74414777 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
74414808 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
74414833 AAGTGACAAG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 52 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:74415010 original size:49 final size:48
Alignment explanation
Indices: 74414939--74415063 Score: 172
Period size: 49 Copynumber: 2.7 Consensus size: 48
74414929 GCATTAGTGA
*
74414939 GATATGTGATTCGTGTAAGACCATAGCTGGGCTACAGCATCGATATGT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTACAGCATCGATATAT
**
74414987 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGATATAT
1 GATATGTGATT-CGTGTAAGACCATAGCTGGGCTACAGCATCGATATAT
74415036 GA-A--T-A-T-GTGTAAGACCATAGCTGGGCTA
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTA
74415064 TGGCATCATT
Statistics
Matches: 73, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
42 22 0.30
44 1 0.01
45 1 0.01
46 1 0.01
48 12 0.16
49 36 0.49
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCTGGGCTACAGCATCGATATAT
Found at i:74415046 original size:42 final size:43
Alignment explanation
Indices: 74414951--74415114 Score: 172
Period size: 42 Copynumber: 3.7 Consensus size: 43
74414941 TATGTGATTC
** *
74414951 GTGTAAGACCATAGCTGGGCTACAGCATCGATATGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATGAAGA-T
*
74414998 ACGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
74415042 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
74415084 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
74415115 GAAAACGAAG
Statistics
Matches: 103, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 64 0.62
43 1 0.01
44 6 0.06
45 2 0.02
47 1 0.01
49 28 0.27
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:74432338 original size:27 final size:27
Alignment explanation
Indices: 74432300--74432354 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
74432290 AGGATAATTT
74432300 TATTCATTCGCCACAAAATGTTTTATA
1 TATTCATTCGCCACAAAATGTTTTATA
74432327 TATTCATTCGCCACAAAATGTTTTATA
1 TATTCATTCGCCACAAAATGTTTTATA
74432354 T
1 T
74432355 CAAGCTGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (27 bp):
TATTCATTCGCCACAAAATGTTTTATA
Found at i:74438659 original size:23 final size:23
Alignment explanation
Indices: 74438613--74438680 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 23
74438603 GTTATTAATT
*
74438613 AAAAATATT--TTAAATATAAT-A
1 AAAAATATTAATTATATA-AATAA
* *
74438634 AAATATATTATTTATATAAATAA
1 AAAAATATTAATTATATAAATAA
*
74438657 AAAAATATTAATTA-AAAAATAA
1 AAAAATATTAATTATATAAATAA
74438679 AA
1 AA
74438681 TAAAAGAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 8 0.21
22 12 0.31
23 19 0.49
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAAATATTAATTATATAAATAA
Found at i:74440556 original size:20 final size:20
Alignment explanation
Indices: 74440531--74440570 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
74440521 AAATTAAAAA
74440531 TTAAAAATCATTAAATTTAT
1 TTAAAAATCATTAAATTTAT
*
74440551 TTAAAAATTATTAAATTTAT
1 TTAAAAATCATTAAATTTAT
74440571 AAAAAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
TTAAAAATCATTAAATTTAT
Found at i:74440581 original size:21 final size:20
Alignment explanation
Indices: 74440533--74440577 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
74440523 ATTAAAAATT
* **
74440533 AAAAATCATTAAATTTATTT
1 AAAAATTATTAAATTTATAA
74440553 AAAAATTATTAAATTTATAA
1 AAAAATTATTAAATTTATAA
74440573 AAAAA
1 AAAAA
74440578 ATTAATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATTATTAAATTTATAA
Found at i:74441641 original size:7 final size:7
Alignment explanation
Indices: 74441631--74441655 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
74441621 GTTTATTGTT
74441631 TATTGAA
1 TATTGAA
74441638 TATTGAA
1 TATTGAA
74441645 TATTGAA
1 TATTGAA
74441652 TATT
1 TATT
74441656 CTTAAATTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (7 bp):
TATTGAA
Found at i:74442448 original size:12 final size:13
Alignment explanation
Indices: 74442428--74442466 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
74442418 GATTAAATGA
74442428 AATAATTAATAAT
1 AATAATTAATAAT
74442441 AA-AATTAA-ATAT
1 AATAATTAATA-AT
74442453 AATAATTAATAAT
1 AATAATTAATAAT
74442466 A
1 A
74442467 CATTTAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
11 1 0.04
12 10 0.43
13 11 0.48
14 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AATAATTAATAAT
Found at i:74442448 original size:25 final size:25
Alignment explanation
Indices: 74442419--74442476 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
74442409 ATTTTCTAAG
74442419 ATTAAATGA-AATAATTAATAATAAA
1 ATTAAAT-ATAATAATTAATAATAAA
*
74442444 ATTAAATATAATAATTAATAATACA
1 ATTAAATATAATAATTAATAATAAA
*
74442469 TTTAAATA
1 ATTAAATA
74442477 CATTTATGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 1 0.03
25 29 0.97
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (25 bp):
ATTAAATATAATAATTAATAATAAA
Found at i:74444003 original size:20 final size:20
Alignment explanation
Indices: 74443966--74444003 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
74443956 AGTTTAGGAT
*
74443966 TAGCTTTGATGATTAAACTA
1 TAGCTTTGATGATGAAACTA
74443986 TAGCTTTAGAT-ATGAAAC
1 TAGCTTT-GATGATGAAAC
74444004 ATCACGTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (20 bp):
TAGCTTTGATGATGAAACTA
Found at i:74449122 original size:35 final size:36
Alignment explanation
Indices: 74449056--74449126 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
74449046 AATAATATAA
*
74449056 TTTATCCAAAAAATTGACTCAAATTTATTTTTATTT
1 TTTATCCAAAAAATTGACTCAAAATTATTTTTATTT
*
74449092 TTTATCCAAAAAATTTACTCAAAATT-TTTTTATTT
1 TTTATCCAAAAAATTGACTCAAAATTATTTTTATTT
74449127 GTAGGAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
35 9 0.27
36 24 0.73
ACGTcount: A:0.37, C:0.11, G:0.01, T:0.51
Consensus pattern (36 bp):
TTTATCCAAAAAATTGACTCAAAATTATTTTTATTT
Found at i:74450958 original size:22 final size:22
Alignment explanation
Indices: 74450928--74450971 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
74450918 TAGTTATATA
74450928 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
74450950 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
74450972 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:74453701 original size:15 final size:15
Alignment explanation
Indices: 74453681--74453737 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
74453671 ATTCAATATT
74453681 AATATTTTAATAATA
1 AATATTTTAATAATA
*
74453696 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
74453715 AATATATTAATAATA
1 AATATTTTAATAATA
*
74453730 AATGTTTT
1 AATATTTT
74453738 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:74456964 original size:18 final size:18
Alignment explanation
Indices: 74456941--74456976 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
74456931 TGTCAGATGC
*
74456941 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
74456959 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
74456977 ATTTCCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.08, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:74456983 original size:18 final size:18
Alignment explanation
Indices: 74456942--74456983 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
74456932 GTCAGATGCG
* *
74456942 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATA
74456960 TATCCTAACCCTTATATA
1 TATCCTAACCCTTATATA
*
74456978 TTTCCT
1 TATCCT
74456984 TTTCTCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (18 bp):
TATCCTAACCCTTATATA
Found at i:74458245 original size:37 final size:33
Alignment explanation
Indices: 74458212--74458313 Score: 118
Period size: 33 Copynumber: 3.1 Consensus size: 33
74458202 GATTAAATTT
* *
74458212 AACCTTAAATCCTAATTTAATTAATTTATTTAAA
1 AACCATAAACCCTAATTT-ATTAATTTATTTAAA
*
74458246 ACCCATAAACCCTAATTTATTAATTTATTT-AA
1 AACCATAAACCCTAATTTATTAATTTATTTAAA
* *
74458278 AACATATAAACCCTAATTTAATTAATTT-TTAAAA
1 AAC-CATAAACCCTAATTT-ATTAATTTATTTAAA
74458312 AA
1 AA
74458314 GAACAATAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
32 4 0.07
33 28 0.47
34 27 0.46
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (33 bp):
AACCATAAACCCTAATTTATTAATTTATTTAAA
Found at i:74458273 original size:33 final size:34
Alignment explanation
Indices: 74458217--74458305 Score: 144
Period size: 33 Copynumber: 2.6 Consensus size: 34
74458207 AATTTAACCT
* *
74458217 TAAATCCTAATTTAATTAATTTATTTAAAACCCA
1 TAAACCCTAATTTAATTAATTTATTTAAAACACA
*
74458251 TAAACCCTAATTT-ATTAATTTATTTAAAACATA
1 TAAACCCTAATTTAATTAATTTATTTAAAACACA
74458284 TAAACCCTAATTTAATTAATTT
1 TAAACCCTAATTTAATTAATTT
74458306 TTAAAAAAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
33 31 0.61
34 20 0.39
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.43
Consensus pattern (34 bp):
TAAACCCTAATTTAATTAATTTATTTAAAACACA
Found at i:74461760 original size:16 final size:16
Alignment explanation
Indices: 74461739--74461795 Score: 78
Period size: 16 Copynumber: 3.6 Consensus size: 16
74461729 TTTGGTTCGC
*
74461739 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
74461755 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
74461771 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
*
74461787 TGTAATGGA
1 TGTATTGGA
74461796 AAAGCTGTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.33
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:74462062 original size:18 final size:17
Alignment explanation
Indices: 74462041--74462075 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
74462031 TTATTATTAA
*
74462041 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
74462059 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
74462076 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:74464698 original size:14 final size:15
Alignment explanation
Indices: 74464679--74464712 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
74464669 ATTATTTTTA
*
74464679 AAATTCAAA-TTTCC
1 AAATTCAAAGGTTCC
74464693 AAATTCAAAGGTTCC
1 AAATTCAAAGGTTCC
74464708 AAATT
1 AAATT
74464713 GCCATGTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (15 bp):
AAATTCAAAGGTTCC
Found at i:74465630 original size:22 final size:22
Alignment explanation
Indices: 74465602--74465646 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
74465592 ATGGACCACC
*
74465602 TCGCTTTCTATTAGGTCTGTAA
1 TCGCTTTCTATTAGGTCCGTAA
74465624 TCGCTTTCTATTAGGTCCGTAA
1 TCGCTTTCTATTAGGTCCGTAA
74465646 T
1 T
74465647 GGTAGTGACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.44
Consensus pattern (22 bp):
TCGCTTTCTATTAGGTCCGTAA
Found at i:74472243 original size:34 final size:34
Alignment explanation
Indices: 74472201--74472274 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
74472191 TAGCAGCTGA
*
74472201 AAAAAGTGAGTGAATGTTGAGAAAAAAAA-AGAAG
1 AAAAAGTGAGCGAATGTTGAGAAAAAAAAGA-AAG
* *
74472235 AAAAAGTGAGCGAGTGTTGAGAAGAAAAAGAAAG
1 AAAAAGTGAGCGAATGTTGAGAAAAAAAAGAAAG
74472269 AAAAAG
1 AAAAAG
74472275 AGTGAGAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 35 0.97
35 1 0.03
ACGTcount: A:0.58, C:0.01, G:0.28, T:0.12
Consensus pattern (34 bp):
AAAAAGTGAGCGAATGTTGAGAAAAAAAAGAAAG
Found at i:74473151 original size:12 final size:12
Alignment explanation
Indices: 74473134--74473159 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74473124 GGTACAAGCA
74473134 ATCATTGAGGAT
1 ATCATTGAGGAT
74473146 ATCATTGAGGAT
1 ATCATTGAGGAT
74473158 AT
1 AT
74473160 AGAGGCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.35
Consensus pattern (12 bp):
ATCATTGAGGAT
Found at i:74477587 original size:25 final size:25
Alignment explanation
Indices: 74477553--74477603 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
74477543 TTGTCCAATG
74477553 ACCTCGTCATGTGTGTGTTACCCTC
1 ACCTCGTCATGTGTGTGTTACCCTC
74477578 ACCTCGTCATGTGTGTGTTACCCTC
1 ACCTCGTCATGTGTGTGTTACCCTC
74477603 A
1 A
74477604 TATGATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.14, C:0.31, G:0.20, T:0.35
Consensus pattern (25 bp):
ACCTCGTCATGTGTGTGTTACCCTC
Found at i:74479070 original size:34 final size:34
Alignment explanation
Indices: 74479028--74479102 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
74479018 AATCGCAGCT
*
74479028 AAAA-AAAAGTGAGTG-GATGTTGAGATA-AAAAAG
1 AAAAGAAAAGTGAGTGAG-TGTTAAGA-AGAAAAAG
74479061 AAAAGAAAAGTGAGTGAGTGTTAAGAAGAAAAAG
1 AAAAGAAAAGTGAGTGAGTGTTAAGAAGAAAAAG
74479095 -AAAGAAAA
1 AAAAGAAAA
74479103 AAAAAATGAG
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
33 13 0.34
34 24 0.63
35 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.27, T:0.15
Consensus pattern (34 bp):
AAAAGAAAAGTGAGTGAGTGTTAAGAAGAAAAAG
Found at i:74481070 original size:17 final size:17
Alignment explanation
Indices: 74481048--74481080 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74481038 TGTGGGTATG
*
74481048 ATATTTCAAATATTTTT
1 ATATTTAAAATATTTTT
74481065 ATATTTAAAATATTTT
1 ATATTTAAAATATTTT
74481081 AATTATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTAAAATATTTTT
Found at i:74482026 original size:28 final size:26
Alignment explanation
Indices: 74481979--74482038 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 26
74481969 TAATTAATTT
74481979 TTAAAATTAAAAAATATTTTAAAATA
1 TTAAAATTAAAAAATATTTTAAAATA
* *
74482005 TTAAAATTATAAAAAATATTTTTAAATT
1 TTAAAA-T-TAAAAAATATTTTAAAATA
74482033 TTAAAA
1 TTAAAA
74482039 ACTTAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 6 0.20
27 1 0.03
28 23 0.77
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
TTAAAATTAAAAAATATTTTAAAATA
Found at i:74485685 original size:12 final size:12
Alignment explanation
Indices: 74485664--74485701 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
74485654 TGATCATCAT
74485664 CAGCAACAGCAG
1 CAGCAACAGCAG
*
74485676 CAGCACCAGCAG
1 CAGCAACAGCAG
*
74485688 CAGCAACAACAG
1 CAGCAACAGCAG
74485700 CA
1 CA
74485702 ACAGCAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.37, G:0.21, T:0.00
Consensus pattern (12 bp):
CAGCAACAGCAG
Found at i:74486433 original size:3 final size:3
Alignment explanation
Indices: 74486425--74486481 Score: 51
Period size: 3 Copynumber: 19.0 Consensus size: 3
74486415 TGTATAAAAT
* * * * * * *
74486425 GCA GCA GCA GCA GCA GCA GCT GCA TCA ACA ACA GCA GCA ACA ACA ACA
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA
74486473 GCA GCA GCA
1 GCA GCA GCA
74486482 ACATTATAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.40, C:0.33, G:0.23, T:0.04
Consensus pattern (3 bp):
GCA
Found at i:74486459 original size:15 final size:15
Alignment explanation
Indices: 74486426--74486484 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
74486416 GTATAAAATG
* * *
74486426 CAGCAGCAGCAGCAG
1 CAGCAGCAACAACAA
* *
74486441 CAGCTGCATCAACAA
1 CAGCAGCAACAACAA
74486456 CAGCAGCAACAACAA
1 CAGCAGCAACAACAA
*
74486471 CAGCAGCAGCAACA
1 CAGCAGCAACAACA
74486485 TTATAAACTG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.42, C:0.34, G:0.20, T:0.03
Consensus pattern (15 bp):
CAGCAGCAACAACAA
Found at i:74487980 original size:10 final size:9
Alignment explanation
Indices: 74487938--74488005 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 9
74487928 ACAAAAGGGA
*
74487938 AAAAAAAAG
1 AAAAGAAAG
74487947 AAGAAG-AAG
1 AA-AAGAAAG
74487956 AAGAAGAAAG
1 AA-AAGAAAG
*
74487966 TAAAGTAAAG
1 AAAAG-AAAG
74487976 AAAAGAAA-
1 AAAAGAAAG
* *
74487984 AGAAGAAAA
1 AAAAGAAAG
*
74487993 AAAAGCAAG
1 AAAAGAAAG
74488002 AAAA
1 AAAA
74488006 AAGGCTGGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
8 7 0.15
9 27 0.56
10 14 0.29
ACGTcount: A:0.75, C:0.01, G:0.21, T:0.03
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:74488005 original size:12 final size:12
Alignment explanation
Indices: 74487938--74488007 Score: 68
Period size: 12 Copynumber: 5.5 Consensus size: 12
74487928 ACAAAAGGGA
74487938 AAAAAAAAGAAG
1 AAAAAAAAGAAG
* *
74487950 AAGAAGAAGAAG
1 AAAAAAAAGAAG
**
74487962 AAAGTAAAGTAAAG
1 AAAAAAAAG--AAG
74487976 AAAAGAAAAGAAG
1 AAAA-AAAAGAAG
74487989 AAAAAAAAGCAAG
1 AAAAAAAAG-AAG
74488002 AAAAAA
1 AAAAAA
74488008 GGCTGGTCTC
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
12 20 0.43
13 16 0.35
14 6 0.13
15 4 0.09
ACGTcount: A:0.76, C:0.01, G:0.20, T:0.03
Consensus pattern (12 bp):
AAAAAAAAGAAG
Found at i:74496969 original size:18 final size:18
Alignment explanation
Indices: 74496946--74497009 Score: 56
Period size: 20 Copynumber: 3.3 Consensus size: 18
74496936 AATCACCAAT
74496946 AAATATTTATTATATAAA
1 AAATATTTATTATATAAA
* *
74496964 AAATATTAATTAAAAATAAA
1 AAATATTTATT--ATATAAA
* *
74496984 ATATATTTATAAATATAAA
1 AAATATTTAT-TATATAAA
74497003 AATATAT
1 AA-ATAT
74497010 AGTTACATAT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
18 10 0.29
19 7 0.20
20 18 0.51
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATATTTATTATATAAA
Found at i:74496984 original size:20 final size:19
Alignment explanation
Indices: 74496959--74497009 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
74496949 TATTTATTAT
74496959 ATAAAAAATATTAATTAAAA
1 ATAAAAAATATTAA-TAAAA
* * *
74496979 ATAAAATATATTTATAAAT
1 ATAAAAAATATTAATAAAA
74496998 ATAAAAATATAT
1 ATAAAAA-ATAT
74497010 AGTTACATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
ATAAAAAATATTAATAAAA
Found at i:74502126 original size:116 final size:116
Alignment explanation
Indices: 74501830--74502178 Score: 621
Period size: 115 Copynumber: 3.0 Consensus size: 116
74501820 GTGTGTTTTT
* *
74501830 TTTCTATACCATAAATCCTACCAAAAGCAAAGAAAACGCATTCATTCGAATCTTATCCGATTCAT
1 TTTCTATACCATTAATCCTACCAAAAGCAAAGAAAGCGCATTCATTCGAATCTTATCCGATTCAT
*
74501895 GGTGTTAAGAAAAAAAACGAGGACAGGGTTGACGTACATAGCCGAACCCGTGA
66 GGTGTT-A-AAAAAAAACGAGGACAGGGTTGACGTACATACCCGAACCCGTGA
*
74501948 TTTCTATACCATTAATCCTACC-AAAGCAAAGAAAGCGCATTCATTCAAATCTTATCCGATTCAT
1 TTTCTATACCATTAATCCTACCAAAAGCAAAGAAAGCGCATTCATTCGAATCTTATCCGATTCAT
74502012 GGTGTTAAAAAAAAACGAGGACAGGGTTGACGTACATACCCGAACCCGTGA
66 GGTGTTAAAAAAAAACGAGGACAGGGTTGACGTACATACCCGAACCCGTGA
74502063 TTTCTATACCATTAATCCTACCAAAAGCAAAGAAAGCGCATTCATTCGAATCTTATCCGATTCAT
1 TTTCTATACCATTAATCCTACCAAAAGCAAAGAAAGCGCATTCATTCGAATCTTATCCGATTCAT
*
74502128 GGTGTTAAAAAAAAA-GAGGGCAGGGTTGACGTACATACCCGAACCCGTGA
66 GGTGTTAAAAAAAAACGAGGACAGGGTTGACGTACATACCCGAACCCGTGA
74502178 T
1 T
74502179 CCCGATAGTA
Statistics
Matches: 224, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
115 100 0.45
116 57 0.25
117 46 0.21
118 21 0.09
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (116 bp):
TTTCTATACCATTAATCCTACCAAAAGCAAAGAAAGCGCATTCATTCGAATCTTATCCGATTCAT
GGTGTTAAAAAAAAACGAGGACAGGGTTGACGTACATACCCGAACCCGTGA
Found at i:74504804 original size:11 final size:11
Alignment explanation
Indices: 74504767--74504819 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
74504757 AATATTCCCT
*
74504767 TCAAAAATCTA
1 TCAAAATTCTA
*
74504778 TCAAATTTC-A
1 TCAAAATTCTA
* * *
74504788 TTAAAATTTTC
1 TCAAAATTCTA
74504799 TCAAAATTCTA
1 TCAAAATTCTA
74504810 TCAAAATTCT
1 TCAAAATTCT
74504820 TTGTTTAAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
10 7 0.22
11 25 0.78
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (11 bp):
TCAAAATTCTA
Found at i:74505016 original size:47 final size:48
Alignment explanation
Indices: 74504954--74505064 Score: 156
Period size: 47 Copynumber: 2.3 Consensus size: 48
74504944 AGTGATAATT
74504954 TTAAAATTTCAATACTATTCGATATTTT-TTAATTTATGTAAATT-TAA
1 TTAAAATTTCAATACTATTCGATATTTTATTAATTTATG-AAATTATAA
* * *
74505001 TT-AAATTTGCAATACTATTTGATATTTTATTCATTTATGCAATTATAA
1 TTAAAATTT-CAATACTATTCGATATTTTATTAATTTATGAAATTATAA
74505049 TTAAAATTTCAATACT
1 TTAAAATTTCAATACT
74505065 GCTTGATTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
46 6 0.11
47 24 0.42
48 21 0.37
49 6 0.11
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.50
Consensus pattern (48 bp):
TTAAAATTTCAATACTATTCGATATTTTATTAATTTATGAAATTATAA
Found at i:74505062 original size:48 final size:47
Alignment explanation
Indices: 74504954--74505087 Score: 164
Period size: 48 Copynumber: 2.8 Consensus size: 47
74504944 AGTGATAATT
* *
74504954 TTAAAATTTCAATACTATTCGATATTTTTTAATTTATGTAAATTTAA
1 TTAAAATTTCAATACTATTTGATATTTTTTCATTTATGTAAATTTAA
*
74505001 TT-AAATTTGCAATACTATTTGATATTTTATTCATTTATG-CAATTATAA
1 TTAAAATTT-CAATACTATTTGATATTTT-TTCATTTATGTAAATT-TAA
** *
74505049 TTAAAATTTCAATACTGCTTGATTTGTTTTTCATTTATG
1 TTAAAATTTCAATACTATTTGATAT-TTTTTCATTTATG
74505088 ATGTTTGCAT
Statistics
Matches: 76, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
46 6 0.08
47 24 0.32
48 37 0.49
49 9 0.12
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (47 bp):
TTAAAATTTCAATACTATTTGATATTTTTTCATTTATGTAAATTTAA
Found at i:74506076 original size:7 final size:7
Alignment explanation
Indices: 74506064--74506089 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
74506054 TAGTCGTTTC
74506064 GTATTTA
1 GTATTTA
74506071 GTATTTA
1 GTATTTA
74506078 GTATTTA
1 GTATTTA
74506085 GTATT
1 GTATT
74506090 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:74506700 original size:18 final size:18
Alignment explanation
Indices: 74506677--74506718 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
74506667 GCTAGGTGCT
*
74506677 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
74506695 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
*
74506713 TTTCCT
1 TATCCT
74506719 TTTCTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:74512416 original size:127 final size:125
Alignment explanation
Indices: 74512184--74512629 Score: 694
Period size: 126 Copynumber: 3.5 Consensus size: 125
74512174 TTATAGCCTC
* *
74512184 ATTTTTCTACGAACTACTGTAGCAAAAGAGCTTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
1 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGT-GGAGCTTTTTTCAGAAATTTTGCTG
* * * * *
74512249 ATAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAAAAAAGTCTACTTAGAATT
65 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
74512310 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTAGGAGCTTTTTTTCAGAAATTTTGCT
1 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGT-GGAGC-TTTTTTCAGAAATTTTGCT
* * *
74512375 GACAGTGTATCCTGCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATT
64 GACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
*
74512437 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGAAATTTTGCTG
1 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTGG-AGCTTTTTTCAGAAATTTTGCTG
* *
74512502 AAAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTTAGAAACGTCTACTCAGAATT
65 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * *
74512563 ATTTTTCTGCAAACTACTGTAGCAAAAAAGCGTCTACATGAGAGCTTTTTTCAGAAATTTTGCTG
1 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTG-GAGCTTTTTTCAGAAATTTTGCTG
74512628 AC
65 AC
74512630 TTCAGAAACG
Statistics
Matches: 294, Mismatches: 23, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
126 179 0.61
127 115 0.39
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (125 bp):
ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCACGTGGAGCTTTTTTCAGAAATTTTGCTGA
CAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:74512844 original size:8 final size:8
Alignment explanation
Indices: 74512833--74512877 Score: 60
Period size: 8 Copynumber: 6.0 Consensus size: 8
74512823 TTAATGAATT
74512833 AACCCTAA
1 AACCCTAA
74512841 AACCCTAA
1 AACCCTAA
74512849 AACCCT-A
1 AACCCTAA
*
74512856 AA-CCTTA
1 AACCCTAA
74512863 AACCCT-A
1 AACCCTAA
74512870 AACCCTAA
1 AACCCTAA
74512878 TTCAATTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 3 0.09
7 13 0.38
8 18 0.53
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.16
Consensus pattern (8 bp):
AACCCTAA
Done.