Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 224 of 284
Found at i:74512864 original size:7 final size:7
Alignment explanation
Indices: 74512833--74512877 Score: 63
Period size: 7 Copynumber: 6.1 Consensus size: 7
74512823 TTAATGAATT
74512833 AACCCTAA
1 AACCCT-A
74512841 AACCCTAA
1 AACCCT-A
74512849 AACCCTA
1 AACCCTA
*
74512856 AACCTTA
1 AACCCTA
74512863 AACCCTA
1 AACCCTA
74512870 AACCCTA
1 AACCCTA
74512877 A
1 A
74512878 TTCAATTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
7 21 0.60
8 14 0.40
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.16
Consensus pattern (7 bp):
AACCCTA
Found at i:74513261 original size:20 final size:18
Alignment explanation
Indices: 74513216--74513265 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 18
74513206 ACAATTATGT
74513216 ATCAATTAAACCTAAATTA
1 ATCAATT-AACCTAAATTA
*
74513235 ATTAATTAACTCTAAATTTA
1 ATCAATTAAC-CTAAA-TTA
74513255 ATCAATTAACC
1 ATCAATTAACC
74513266 CTAACACCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 3 0.11
19 12 0.44
20 12 0.44
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (18 bp):
ATCAATTAACCTAAATTA
Found at i:74513269 original size:20 final size:19
Alignment explanation
Indices: 74513216--74513269 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 19
74513206 ACAATTATGT
*
74513216 ATCAATTAAACCTAAATTA
1 ATCAATTAACCCTAAATTA
* *
74513235 ATTAATTAACTCTAAATTTA
1 ATCAATTAACCCTAAA-TTA
74513255 ATCAATTAACCCTAA
1 ATCAATTAACCCTAA
74513270 CACCCTAAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (19 bp):
ATCAATTAACCCTAAATTA
Found at i:74513418 original size:22 final size:23
Alignment explanation
Indices: 74513383--74513428 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
74513373 ATACCCTGAC
*
74513383 CCTAAAAAACCCTAACCTTAAAT
1 CCTAAAAAACCCTAACCATAAAT
74513406 CCTAAAAAA-CCTAACCATAAAT
1 CCTAAAAAACCCTAACCATAAAT
74513428 C
1 C
74513429 AAGTAAACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (23 bp):
CCTAAAAAACCCTAACCATAAAT
Found at i:74515851 original size:30 final size:31
Alignment explanation
Indices: 74515800--74515860 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 31
74515790 GGTTTCATTT
* *
74515800 CAGTCACTCAACTTTTGAAAAA-TAACAAAA
1 CAGTCACTCAACTTATAAAAAAGTAACAAAA
*
74515830 CAGTCACT-AACGTTATAAAAAAGTGACAAAA
1 CAGTCACTCAAC-TTATAAAAAAGTAACAAAA
74515861 TAATCACTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 3 0.12
30 16 0.62
31 7 0.27
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.21
Consensus pattern (31 bp):
CAGTCACTCAACTTATAAAAAAGTAACAAAA
Found at i:74517947 original size:21 final size:20
Alignment explanation
Indices: 74517923--74517967 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
74517913 CTATGTGGCA
74517923 AGTTAACTAT-CCACATCAGC
1 AGTTAACT-TGCCACATCAGC
74517943 TAGTTAACTTGCCACATCAGC
1 -AGTTAACTTGCCACATCAGC
74517964 AGTT
1 AGTT
74517968 CTGTTAAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (20 bp):
AGTTAACTTGCCACATCAGC
Found at i:74532704 original size:22 final size:21
Alignment explanation
Indices: 74532663--74532713 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
74532653 CCTAAGAATT
*
74532663 AAAAAAGAAAATCAATTTGAAC
1 AAAAAA-AAAATCAAATTGAAC
* *
74532685 AAGAAAAAAAATTAAATTGAAT
1 AA-AAAAAAAATCAAATTGAAC
74532707 AAAAAAA
1 AAAAAAA
74532714 TTAAGCTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 5 0.20
22 16 0.64
23 4 0.16
ACGTcount: A:0.71, C:0.04, G:0.08, T:0.18
Consensus pattern (21 bp):
AAAAAAAAAATCAAATTGAAC
Found at i:74535316 original size:43 final size:43
Alignment explanation
Indices: 74535269--74535418 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 43
74535259 ATTACCGAGA
74535269 TGTGATTACATGTAAGACCATGTCTGGGACATTGGAATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGAATTGTAT
***
74535312 TGTGATTACGCCTAAGACCATGTCTGGGACATT-GACATCAT-TA-
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGA-AT--TGTAT
* * * * * **
74535355 TATGATTTCGTGTAAGACTATGTCTGGGACATTGGCACCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGAATTGTAT
*
74535397 ATGTGATAACATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
74535419 ATCTAGGATA
Statistics
Matches: 84, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 77 0.92
44 3 0.04
45 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGAATTGTAT
Found at i:74542746 original size:24 final size:24
Alignment explanation
Indices: 74542718--74542769 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
74542708 TTTGTAGGTC
* * *
74542718 AAATAAATTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
74542742 AAATACACTATACTACTAAATACT
1 AAATAAACTATACTAATAAATACT
74542766 AAAT
1 AAAT
74542770 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.13, G:0.04, T:0.31
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:74547929 original size:54 final size:54
Alignment explanation
Indices: 74547847--74547969 Score: 246
Period size: 54 Copynumber: 2.3 Consensus size: 54
74547837 NNNNNNNNNN
74547847 TGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCC
1 TGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCC
74547901 TGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCC
1 TGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCC
74547955 TGGACTGGTAATCCC
1 TGGACTGGTAATCCC
74547970 ACTGTAAGGA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (54 bp):
TGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCC
Found at i:74548055 original size:46 final size:46
Alignment explanation
Indices: 74548003--74548230 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
74547993 AGTGTGCTCT
* *
74548003 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
74548049 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
74548095 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
74548141 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
74548187 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
74548231 TCACGTCAAA
Statistics
Matches: 168, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 167 0.99
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:74548536 original size:23 final size:25
Alignment explanation
Indices: 74548491--74548537 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
74548481 AATAAATATA
*
74548491 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
74548516 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
74548538 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:74549841 original size:23 final size:25
Alignment explanation
Indices: 74549815--74549861 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
74549805 TATCATTCAT
*
74549815 TTCATTATATC-A-ATATTTTATGC
1 TTCATCATATCTATATATTTTATGC
*
74549838 TTCATCATTTCTATATATTTTATG
1 TTCATCATATCTATATATTTTATG
74549862 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.28, C:0.13, G:0.04, T:0.55
Consensus pattern (25 bp):
TTCATCATATCTATATATTTTATGC
Found at i:74550184 original size:46 final size:46
Alignment explanation
Indices: 74550132--74550387 Score: 332
Period size: 46 Copynumber: 5.7 Consensus size: 46
74550122 TGCCGTAGTG
* * * *
74550132 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCAAGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
** * * * *
74550178 TCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATAGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
74550224 TCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
74550270 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
74550316 TCTTTCAACCATGGTCTT--ACA---C--A-CAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
74550354 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
74550388 AAAGCACACT
Statistics
Matches: 186, Mismatches: 15, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
38 33 0.18
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 139 0.75
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:74550352 original size:38 final size:38
Alignment explanation
Indices: 74550301--74550376 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
74550291 CATTTCATAT
74550301 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
74550339 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
74550377 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:74553662 original size:205 final size:207
Alignment explanation
Indices: 74553295--74553714 Score: 754
Period size: 205 Copynumber: 2.0 Consensus size: 207
74553285 TTTTGGACCA
*
74553295 AAAACAGGGGATATTCATTGACTAGGAAATAGCACCACATTTGATAAAACAACAGCGGTATTGGA
1 AAAACAGGGGACATTCATTGACTAGGAAATAGCACCACATTTGAT--AACAACAGCGGTATTGGA
*
74553360 CATCATATACACTTCTCATCAATACCATACCAAGAAACTAGAAGGCAGCAGCAAGTTCTTCCCCA
64 CATCATATACACTTCTCATCAATACCATACCAAAAAACTAGAAGGCAGCAGCAAGTTCTTCCCCA
* *
74553425 CCAAAAATTTATTAAATACTTTCATGCCAGACCCCTGAACTGTCATGAAATCGATGCATCCAACA
129 CCAAAAATTTATTAAATACTTTCATGCCAGACCCCTCAACTGCCATGAAATCGATGCATCCAACA
74553490 CCTTTTCGGGGTTT
194 CCTTTTCGGGGTTT
74553504 AAAACA-GGGACATTCATTGACTAGGAAATAGCACCACATTTGAT-ACAACAGCGGTATTGGACA
1 AAAACAGGGGACATTCATTGACTAGGAAATAGCACCACATTTGATAACAACAGCGGTATTGGACA
74553567 TCATATACACTTCTCATCAATACCATACCAAAAAACTAGAAGGCAGCAGCAAGTTCTTCCCCACC
66 TCATATACACTTCTCATCAATACCATACCAAAAAACTAGAAGGCAGCAGCAAGTTCTTCCCCACC
* *
74553632 ACAAATTTATTGAATACTTTCATGCCAGACCCCTCAACTGCCATGAAATCGATGCATCCAACACC
131 AAAAATTTATTAAATACTTTCATGCCAGACCCCTCAACTGCCATGAAATCGATGCATCCAACACC
74553697 TTTTCGGGGTTT
196 TTTTCGGGGTTT
74553709 AAAACA
1 AAAACA
74553715 AATGAGACTA
Statistics
Matches: 205, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
205 162 0.79
208 37 0.18
209 6 0.03
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (207 bp):
AAAACAGGGGACATTCATTGACTAGGAAATAGCACCACATTTGATAACAACAGCGGTATTGGACA
TCATATACACTTCTCATCAATACCATACCAAAAAACTAGAAGGCAGCAGCAAGTTCTTCCCCACC
AAAAATTTATTAAATACTTTCATGCCAGACCCCTCAACTGCCATGAAATCGATGCATCCAACACC
TTTTCGGGGTTT
Found at i:74561546 original size:22 final size:22
Alignment explanation
Indices: 74561519--74561572 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
74561509 ATTAGTCCTT
74561519 AAACTTTAAACATTCTAATTAC
1 AAACTTTAAACATTCTAATTAC
74561541 AAACTTTAAACATTCTAATTAC
1 AAACTTTAAACATTCTAATTAC
*
74561563 -AACATTAAAC
1 AAACTTTAAAC
74561573 TGTCGATGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 9 0.29
22 22 0.71
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (22 bp):
AAACTTTAAACATTCTAATTAC
Found at i:74563997 original size:20 final size:19
Alignment explanation
Indices: 74563974--74564018 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
74563964 TCCTTCTTTC
* *
74563974 TTTCTTTTTTCTTTATTTTA
1 TTTCTTTATTCTTT-TATTA
74563994 TTTCTTTATTCTTTTATTA
1 TTTCTTTATTCTTTTATTA
74564013 TTTCTT
1 TTTCTT
74564019 CAATTATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTCTTTATTCTTTTATTA
Found at i:74567572 original size:13 final size:13
Alignment explanation
Indices: 74567554--74567579 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74567544 AAGAAAGAAG
74567554 AACCTTTCTCACA
1 AACCTTTCTCACA
74567567 AACCTTTCTCACA
1 AACCTTTCTCACA
74567580 CATATATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31
Consensus pattern (13 bp):
AACCTTTCTCACA
Found at i:74572532 original size:17 final size:17
Alignment explanation
Indices: 74572492--74572525 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
74572482 TTATATAAAA
* *
74572492 TTATTATTATTATGGTT
1 TTATAATTATTATGATT
74572509 TTATAATTATTATGATT
1 TTATAATTATTATGATT
74572526 ATTTAATGGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (17 bp):
TTATAATTATTATGATT
Found at i:74574124 original size:41 final size:40
Alignment explanation
Indices: 74574076--74574181 Score: 110
Period size: 38 Copynumber: 2.7 Consensus size: 40
74574066 TCGACCTCGA
*
74574076 GTCGATGAGACACTGGGTGTCACTATTTTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCACTATTTTACTTAGGATAG
* ** * *
74574116 ATTCGATGAGGTACT-GG-GT-ACCATTTTACTTAGGCTAG
1 -GTCGATGAGACACTGGGTGTCACTATTTTACTTAGGATAG
*
74574154 GCCGATGAGACACTGGGTGTCAACTATT
1 GTCGATGAGACACTGGGTGTC-ACTATT
74574182 GCTTCGAACT
Statistics
Matches: 50, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
37 10 0.20
38 18 0.36
39 4 0.08
40 2 0.04
41 16 0.32
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (40 bp):
GTCGATGAGACACTGGGTGTCACTATTTTACTTAGGATAG
Found at i:74576909 original size:40 final size:40
Alignment explanation
Indices: 74576860--74576936 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
74576850 ACGGTACCAT
* * *
74576860 TTGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATAC
1 TTGGAGTGTAGGGCTGGATGGGTCGATTTTATCCCCATAC
*
74576900 TTGGAGTGTAGGGCTGGGTGGGTCGATTTTATCCCCA
1 TTGGAGTGTAGGGCTGGATGGGTCGATTTTATCCCCA
74576937 CATGGTGTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.14, C:0.14, G:0.35, T:0.36
Consensus pattern (40 bp):
TTGGAGTGTAGGGCTGGATGGGTCGATTTTATCCCCATAC
Found at i:74605396 original size:129 final size:131
Alignment explanation
Indices: 74605049--74605400 Score: 414
Period size: 132 Copynumber: 2.7 Consensus size: 131
74605039 ATCAAACTGC
*
74605049 TTAAGTGGAA-TCACGATTGTAAATTGATGAACTCTTTAAGAAGTGTTCATAATCATAAATCAAT
1 TTAAGT-GAAGTCACGATTGTAAATTGATGAACTCTTTAAGAAGTGTTCATGATCATAAATCAAT
* * *
74605113 AAACTGAAGTCGTGATCGTAAATCAACAGGCTTTAAACATGACAATCGTGATCCTAAATCAGTGA
65 GAACTGAAGTCGTGATCGTAAATCAACAGGCTTTAAAAATGACAATCGTGAT-CT-AATCAGCGA
74605178 AATG
128 AATG
* * * * *
74605182 TTAATTGTAGTCATGATTG-AAAATCAGTGAACTC-TTAAGAAGTGTTCATGATCATAAATCAAT
1 TTAAGTGAAGTCACGATTGTAAATTGA-TGAACTCTTTAAGAAGTGTTCATGATCATAAATCAAT
* * * *
74605245 GAACTGAAGTCGTGATTGTAAATCAGC-GAGCTTTAAAAATGACAGTCGTGAT-T-GT-AGCGAA
65 GAACTGAAGTCGTGATCGTAAATCAACAG-GCTTTAAAAATGACAATCGTGATCTAATCAGCGAA
74605306 CTAT-
129 --ATG
* * *
74605310 TTAAGTGAAGTCGCGATTGTAAATTGATGAATTCTTTAAGAAGTGTTCATGATCATAAATTAATG
1 TTAAGTGAAGTCACGATTGTAAATTGATGAACTCTTTAAGAAGTGTTCATGATCATAAATCAATG
* * *
74605375 AACTGGAGCCGTGATCATAAATCAAC
66 AACTGAAGTCGTGATCGTAAATCAAC
74605401 GAATTGTTAG
Statistics
Matches: 186, Mismatches: 26, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
127 5 0.03
128 22 0.12
129 57 0.31
130 1 0.01
131 1 0.01
132 80 0.43
133 20 0.11
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (131 bp):
TTAAGTGAAGTCACGATTGTAAATTGATGAACTCTTTAAGAAGTGTTCATGATCATAAATCAATG
AACTGAAGTCGTGATCGTAAATCAACAGGCTTTAAAAATGACAATCGTGATCTAATCAGCGAAAT
G
Found at i:74605452 original size:39 final size:37
Alignment explanation
Indices: 74605409--74605530 Score: 129
Period size: 39 Copynumber: 3.2 Consensus size: 37
74605399 ACGAATTGTT
*
74605409 AGAAAATAAGAGGTCGTGATCGTAAATCAGCGGACCGTA
1 AGAAAATAAGA--TCATGATCGTAAATCAGCGGACCGTA
** **
74605448 AGAAAGCCGAAGATCATGATCGTAAATCAGTAGACCGTA
1 AGAAA--ATAAGATCATGATCGTAAATCAGCGGACCGTA
*
74605487 AGAAAGTCGAAGATCATGATCGTAAATCAGCGGACCGTA
1 AGAAAAT--AAGATCATGATCGTAAATCAGCGGACCGTA
74605526 A-AAAA
1 AGAAAA
74605531 GCCAAAGGTC
Statistics
Matches: 69, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
38 3 0.04
39 62 0.90
41 4 0.06
ACGTcount: A:0.42, C:0.16, G:0.25, T:0.17
Consensus pattern (37 bp):
AGAAAATAAGATCATGATCGTAAATCAGCGGACCGTA
Found at i:74605543 original size:39 final size:39
Alignment explanation
Indices: 74605425--74605546 Score: 190
Period size: 39 Copynumber: 3.1 Consensus size: 39
74605415 TAAGAGGTCG
74605425 TGATCGTAAATCAGCGGACCGTAAGAAAGCCGAAGATCA
1 TGATCGTAAATCAGCGGACCGTAAGAAAGCCGAAGATCA
** *
74605464 TGATCGTAAATCAGTAGACCGTAAGAAAGTCGAAGATCA
1 TGATCGTAAATCAGCGGACCGTAAGAAAGCCGAAGATCA
* * *
74605503 TGATCGTAAATCAGCGGACCGTAAAAAAGCCAAAGGTCA
1 TGATCGTAAATCAGCGGACCGTAAGAAAGCCGAAGATCA
74605542 TGATC
1 TGATC
74605547 ATATAAATTA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.18
Consensus pattern (39 bp):
TGATCGTAAATCAGCGGACCGTAAGAAAGCCGAAGATCA
Found at i:74607996 original size:18 final size:18
Alignment explanation
Indices: 74607931--74608045 Score: 97
Period size: 18 Copynumber: 6.3 Consensus size: 18
74607921 AGCAATTAAT
*
74607931 CAATCAGTAATATTCATTAA
1 CAATCAGT--TATTCAGTAA
* *
74607951 CAATCAGTCAATCAG-AA
1 CAATCAGTTATTCAGTAA
* *
74607968 CAATTATTTATTCAGTAA
1 CAATCAGTTATTCAGTAA
* *
74607986 CAGTCAGTTATTCGGTAA
1 CAATCAGTTATTCAGTAA
* *
74608004 CAATCAATTATTCAATAA
1 CAATCAGTTATTCAGTAA
* * *
74608022 TAATAAGTTATTCAGTAT
1 CAATCAGTTATTCAGTAA
74608040 CAATCA
1 CAATCA
74608046 ATTGATCGGT
Statistics
Matches: 72, Mismatches: 22, Indels: 4
0.73 0.22 0.04
Matches are distributed among these distances:
17 13 0.18
18 51 0.71
20 8 0.11
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.34
Consensus pattern (18 bp):
CAATCAGTTATTCAGTAA
Found at i:74608081 original size:18 final size:18
Alignment explanation
Indices: 74608055--74608124 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
74608045 AATTGATCGG
*
74608055 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
*
74608073 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
* * * *
74608091 -TATACAATAACAATTAAA
1 TTATTCAGTAAC-AGTCAA
74608109 TTATTCAGTAACAGTC
1 TTATTCAGTAACAGTC
74608125 GATCTTTCTA
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
17 12 0.32
18 14 0.37
19 12 0.32
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:74609462 original size:5 final size:5
Alignment explanation
Indices: 74609452--74609485 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
74609442 TTTCTTTACT
74609452 TAATA TAATA TAATA TAATA TAATA TAATA TAAT
1 TAATA TAATA TAATA TAATA TAATA TAATA TAAT
74609486 TAAAACATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:74611021 original size:56 final size:57
Alignment explanation
Indices: 74610917--74611029 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 57
74610907 TAGTTTACAA
74610917 TATATCTACTCTATCGGAGGCATCACAAAAATATCCCTTTTCTCATTCATCACATAT
1 TATATCTACTCTATCGGAGGCATCACAAAAATATCCCTTTTCTCATTCATCACATAT
74610974 TATATCTACTCTATCGGAGGCATC-CAAAAATATCCCTTTTCTCATTCATCACATAT
1 TATATCTACTCTATCGGAGGCATCACAAAAATATCCCTTTTCTCATTCATCACATAT
74611030 AAGAATTTAC
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 32 0.57
57 24 0.43
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (57 bp):
TATATCTACTCTATCGGAGGCATCACAAAAATATCCCTTTTCTCATTCATCACATAT
Found at i:74613201 original size:34 final size:34
Alignment explanation
Indices: 74613153--74613223 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
74613143 CTGAATTTAG
*
74613153 CATATAGTTGCTTTTTACGCAGAGTTTGCAACAC
1 CATATAGTTACTTTTTACGCAGAGTTTGCAACAC
74613187 CATATAGTTACTTTTTACGCAGAGTTTGCAACAC
1 CATATAGTTACTTTTTACGCAGAGTTTGCAACAC
74613221 CAT
1 CAT
74613224 TCTCACATAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.35
Consensus pattern (34 bp):
CATATAGTTACTTTTTACGCAGAGTTTGCAACAC
Found at i:74621621 original size:69 final size:68
Alignment explanation
Indices: 74621398--74621634 Score: 219
Period size: 69 Copynumber: 3.5 Consensus size: 68
74621388 TGACATTCGA
* * * *
74621398 GTCATATTAAGGCTTGTA-AGC-GAAGAGTCGCAGCCTCCAACACAATTTGTGAGAGCAAAGCTC
1 GTCATATTAAGGC-T-TACAGCTGAAGAGCCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTC
*
74621461 TACCT
64 CACCT
* * * * * * * * * *
74621466 GTCATATTAAGGCTCATAGGTGAAAAGCCGTAACCTTCAACATAGTTAGCGAGAACAAAGCTAAC
1 GTCATATTAAGGCTTACAGCTGAAGAGCCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCT-CC
*
74621531 AGCT
65 ACCT
* * *
74621535 GTTATATTAAGGTTTACAGCTGAAGAGCCACAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCC
1 GTCATATTAAGGCTTACAGCTGAAGAGCCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCT-CC
74621600 ACCT
65 ACCT
* *
74621604 GTCATACTAAAGCTTACAGAC-GAAGAGCCGC
1 GTCATATTAAGGCTTACAG-CTGAAGAGCCGC
74621635 TGCTTCTAAT
Statistics
Matches: 130, Mismatches: 35, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
66 1 0.01
67 3 0.02
68 44 0.34
69 81 0.62
70 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (68 bp):
GTCATATTAAGGCTTACAGCTGAAGAGCCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCCA
CCT
Found at i:74621845 original size:58 final size:58
Alignment explanation
Indices: 74621749--74621949 Score: 294
Period size: 58 Copynumber: 3.5 Consensus size: 58
74621739 ATTATGTTAC
* * *
74621749 CTTTCAAAATTTTCACAAGTATAAAACAGCTCGGGGATTCACATCCCCAGTTGGTTAT
1 CTTTCAAAATTTTCACAAGTATAAAACAGCTCGTGGATTCACATCCCCAATTGATTAT
* * * *
74621807 CTTTCAAAATTTTCACAAGTATAAAACAGCTCATGGATTCGCATCCCCATTTAATTAT
1 CTTTCAAAATTTTCACAAGTATAAAACAGCTCGTGGATTCACATCCCCAATTGATTAT
* * * *
74621865 CTTTCAGAATTTTCACAAGTATAAAATAGCTTGTAGATTCACATCCCCAATTGATTAT
1 CTTTCAAAATTTTCACAAGTATAAAACAGCTCGTGGATTCACATCCCCAATTGATTAT
*
74621923 CTTTCAAATTTTTCACAAGTATAAAAC
1 CTTTCAAAATTTTCACAAGTATAAAAC
74621950 TATTCGCGGA
Statistics
Matches: 126, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 126 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (58 bp):
CTTTCAAAATTTTCACAAGTATAAAACAGCTCGTGGATTCACATCCCCAATTGATTAT
Found at i:74625192 original size:22 final size:22
Alignment explanation
Indices: 74625164--74625226 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
74625154 TTTGAAGTTT
74625164 ATAGAGAATGTCAGTACTAGGA
1 ATAGAGAATGTCAGTACTAGGA
* *
74625186 ATAGAGAATGTCAGTACCAGGG
1 ATAGAGAATGTCAGTACTAGGA
*
74625208 ATAGAGAATGTCAATACTA
1 ATAGAGAATGTCAGTACTA
74625227 AGGGTAGTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.25, T:0.22
Consensus pattern (22 bp):
ATAGAGAATGTCAGTACTAGGA
Found at i:74633735 original size:26 final size:26
Alignment explanation
Indices: 74633685--74633735 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
74633675 GAGTAACAAT
* *
74633685 TAGTTAATCAGTTACTCATCTGTTAG
1 TAGTTAATCAGTTACTCAACAGTTAG
* *
74633711 TAGTTAATCAGTTAGTTAACAGTTA
1 TAGTTAATCAGTTACTCAACAGTTA
74633736 CTTCTCATCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (26 bp):
TAGTTAATCAGTTACTCAACAGTTAG
Found at i:74654550 original size:44 final size:45
Alignment explanation
Indices: 74654455--74654734 Score: 153
Period size: 45 Copynumber: 6.3 Consensus size: 45
74654445 GATCAAAGAT
* * *
74654455 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAA
1 GCAGATCTTGTCTTCACATATTGGTCGCGAAATAGATCGAAGAAA
** * **
74654500 GCAGATCTTGTCTTCATGTATTGG-CGTGAAATAGATCGAAGGTA
1 GCAGATCTTGTCTTCACATATTGGTCGCGAAATAGATCGAAGAAA
* * * * * * *
74654544 GCAGATCCTATCTTC-CTATATTGGTAG-GAAGTGGATCGACG-AT
1 GCAGATCTTGTCTTCAC-ATATTGGTCGCGAAATAGATCGAAGAAA
* * * * * * * *
74654587 GCAGGTCCTATCTTC-CTATATTGGTAG-GAAGTGGATCGACG-AT
1 GCAGATCTTGTCTTCAC-ATATTGGTCGCGAAATAGATCGAAGAAA
* * * *
74654630 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
1 GCAGATCTTGTCTTCACATATTGGTCGCGAAATAGATCGAAGAAA
* ** * * * * *
74654675 GCAGATCTTATCTTCATGTATTTGACGTGAAGTAGATCGAAGATTA
1 GCAGATCTTGTCTTCACATATTGGTCGCGAAATAGATCGAAGA-AA
*
74654721 -CAGATCTTGCCTTC
1 GCAGATCTTGTCTTC
74654735 CTGTATTTGG
Statistics
Matches: 190, Mismatches: 39, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
43 62 0.33
44 58 0.31
45 69 0.36
46 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (45 bp):
GCAGATCTTGTCTTCACATATTGGTCGCGAAATAGATCGAAGAAA
Found at i:74654603 original size:43 final size:44
Alignment explanation
Indices: 74654417--74654718 Score: 254
Period size: 43 Copynumber: 6.9 Consensus size: 44
74654407 CGTAAATAGG
* *
74654417 TCCTATCTTCCTATATTGGTAG-GAAGTGGATCAAAGATGCAGA
1 TCCTATCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGA
* * * * *
74654460 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGA
1 TCCTATCTTCCTATATTGGTAGCGAAGTAGATCGAAG-ATGCAGA
* * * * * * * *
74654505 TCTTGTCTTCATGTATTGG-CGTGAAATAGATCGAAGGTAGCAGA
1 TCCTATCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT-GCAGA
* * *
74654549 TCCTATCTTCCTATATTGGTAG-GAAGTGGATCGACGATGCAGG
1 TCCTATCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGA
* *
74654592 TCCTATCTTCCTATATTGGTAG-GAAGTGGATCGACGATGCAGA
1 TCCTATCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGA
* * * * * *
74654635 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGA
1 TCCTATCTTCCTATATTGGTAGCGAAGTAGATCGAAG-ATGCAGA
* * * * *
74654680 TCTTATCTTCATGTATTTG-ACGTGAAGTAGATCGAAGAT
1 TCCTATCTTCCTATATTGGTA-GCGAAGTAGATCGAAGAT
74654719 TACAGATCTT
Statistics
Matches: 209, Mismatches: 43, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
43 81 0.39
44 71 0.34
45 57 0.27
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (44 bp):
TCCTATCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGA
Found at i:74654725 original size:45 final size:45
Alignment explanation
Indices: 74654658--74654743 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
74654648 TACTGGTGGC
*
74654658 GAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTTGACGT
1 GAAGTAGATCGAAGAAAGCAGATCTTACCTTCATGTATTTGACGT
* * *
74654703 GAAGTAGATCGAAGATTA-CAGATCTTGCCTTCCTGTATTTG
1 GAAGTAGATCGAAGA-AAGCAGATCTTACCTTCATGTATTTG
74654744 GCAGCGAAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
45 35 0.97
46 1 0.03
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (45 bp):
GAAGTAGATCGAAGAAAGCAGATCTTACCTTCATGTATTTGACGT
Found at i:74659669 original size:24 final size:24
Alignment explanation
Indices: 74659637--74659686 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
74659627 TACTTCTTCT
74659637 GATCAATCCATTCCTCCAGTTCAG
1 GATCAATCCATTCCTCCAGTTCAG
*
74659661 GATCAATCCATTCCTCTAGTTCAG
1 GATCAATCCATTCCTCCAGTTCAG
74659685 GA
1 GA
74659687 CTCTTATTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (24 bp):
GATCAATCCATTCCTCCAGTTCAG
Found at i:74668270 original size:13 final size:13
Alignment explanation
Indices: 74668252--74668285 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
74668242 TATTTTATTA
74668252 ATATTTTAATAAG
1 ATATTTTAATAAG
74668265 ATATTTTAATAAG
1 ATATTTTAATAAG
74668278 ATATTTTA
1 ATATTTTA
74668286 TTATTTTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (13 bp):
ATATTTTAATAAG
Found at i:74670954 original size:93 final size:93
Alignment explanation
Indices: 74670774--74671151 Score: 702
Period size: 93 Copynumber: 4.1 Consensus size: 93
74670764 TTTTATATAT
* * *
74670774 AAATACATTCTTATATTTCAATTATGAACTATAGGAGTACCTTTTTTTCCTTGCTTTCTTGGACG
1 AAATACATTCTTATATTTCAATGATGAACTATAAGAGTACC-TTTATTCCTTGCTTTCTTGGACG
74670839 AAATCGTATAAATACTCATCGCAATTAAA
65 AAATCGTATAAATACTCATCGCAATTAAA
74670868 AAATACATTCTTATATTTCAATGATGAACTATAAGAGTACCTTTATTCCTTGCTTTCTTGGACGA
1 AAATACATTCTTATATTTCAATGATGAACTATAAGAGTACCTTTATTCCTTGCTTTCTTGGACGA
74670933 AATCGTATAAATACTCATCGCAATTAAA
66 AATCGTATAAATACTCATCGCAATTAAA
74670961 AAATACATTCTTATATTTCAATGATGAACTATAAGAGTACCTTTATTCCTTGCTTTCTTGGACGA
1 AAATACATTCTTATATTTCAATGATGAACTATAAGAGTACCTTTATTCCTTGCTTTCTTGGACGA
74671026 AATCGTATAAATACTCATCGCAATTAAA
66 AATCGTATAAATACTCATCGCAATTAAA
74671054 AAATACATTCTTATATTTCAATGATGAACTATAAGAGTACCTTTATTCCTTGCTTTCTTGGACGA
1 AAATACATTCTTATATTTCAATGATGAACTATAAGAGTACCTTTATTCCTTGCTTTCTTGGACGA
* *
74671119 AATAGTATAAATACTCACCGCAATTAAA
66 AATCGTATAAATACTCATCGCAATTAAA
74671147 AAATA
1 AAATA
74671152 TTTTGTTTTA
Statistics
Matches: 279, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
93 240 0.86
94 39 0.14
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.37
Consensus pattern (93 bp):
AAATACATTCTTATATTTCAATGATGAACTATAAGAGTACCTTTATTCCTTGCTTTCTTGGACGA
AATCGTATAAATACTCATCGCAATTAAA
Found at i:74675417 original size:14 final size:12
Alignment explanation
Indices: 74675387--74675434 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
74675377 TCAATCCACA
*
74675387 ATTTCACATTTC
1 ATTTCTCATTTC
74675399 ATTTCTCATTTCCC
1 ATTTCTCATTT--C
**
74675413 ATTTCAAATTTC
1 ATTTCTCATTTC
74675425 ATTTCTCATT
1 ATTTCTCATT
74675435 CTTTTTGCCA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
12 19 0.66
14 10 0.34
ACGTcount: A:0.23, C:0.25, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTCTCATTTC
Found at i:74684578 original size:23 final size:23
Alignment explanation
Indices: 74684548--74684593 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
74684538 TAGATGAATG
74684548 TTAAATTTGATTTTATTTTAAAT
1 TTAAATTTGATTTTATTTTAAAT
*
74684571 TTAAATTTTATTTTATTTTAAAT
1 TTAAATTTGATTTTATTTTAAAT
74684594 GAAAGCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (23 bp):
TTAAATTTGATTTTATTTTAAAT
Found at i:74690162 original size:25 final size:26
Alignment explanation
Indices: 74690134--74690184 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
74690124 CTTATTTCAT
*
74690134 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
74690159 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
74690185 AAAAAATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:74690205 original size:21 final size:21
Alignment explanation
Indices: 74690173--74690222 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
74690163 TCAAATATAT
*
74690173 TTAAAA-ACATAAAAAAAATA
1 TTAAAACAAATAAAAAAAATA
**
74690193 TTAAAACAAATAAAAATGATA
1 TTAAAACAAATAAAAAAAATA
*
74690214 CTAAAACAA
1 TTAAAACAA
74690223 TTCTTAAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.70, C:0.08, G:0.02, T:0.20
Consensus pattern (21 bp):
TTAAAACAAATAAAAAAAATA
Found at i:74690770 original size:29 final size:29
Alignment explanation
Indices: 74690727--74690789 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
74690717 GAATAGGGCA
* *
74690727 ACACGGTCTCCCACACGGGTGTGTAAACC
1 ACACGGTCTCCCACAAGGGCGTGTAAACC
** **
74690756 ACACGGTCTTTCACAAGGGCGTGTGGACC
1 ACACGGTCTCCCACAAGGGCGTGTAAACC
74690785 ACACG
1 ACACG
74690790 ACCCCTCACC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (29 bp):
ACACGGTCTCCCACAAGGGCGTGTAAACC
Found at i:74691548 original size:91 final size:91
Alignment explanation
Indices: 74691389--74691554 Score: 215
Period size: 91 Copynumber: 1.8 Consensus size: 91
74691379 AGTTTATCTA
* * * ** ** *
74691389 CAAACACTGGTGGTTTACCCACAAACTTACTAGCAGTTTTTATCTACAAAAATGTTGTGTATTTA
1 CAAACACTGGTGGTTTACCAAAAAACTTACTAGCAGCTTTTATCTACAAAAACATTGTACATTCA
74691454 CAACCTACTGGCAGTGTATTAACCTG
66 CAACCTACTGGCAGTGTATTAACCTG
* * * **
74691480 CAAACACTGGTGGTTTATCAAAAAATTTACTAGCAGCTTTTATCTGCAAACCCATTGTACATTCA
1 CAAACACTGGTGGTTTACCAAAAAACTTACTAGCAGCTTTTATCTACAAAAACATTGTACATTCA
74691545 CAACCTACTG
66 CAACCTACTG
74691555 ACAACATATG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
91 62 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (91 bp):
CAAACACTGGTGGTTTACCAAAAAACTTACTAGCAGCTTTTATCTACAAAAACATTGTACATTCA
CAACCTACTGGCAGTGTATTAACCTG
Found at i:74693374 original size:42 final size:42
Alignment explanation
Indices: 74693315--74693404 Score: 119
Period size: 42 Copynumber: 2.1 Consensus size: 42
74693305 ATGTCCTCAT
**
74693315 CCGTGTAACTCTCTGAGT-AGGTTCACATACCCGTGTGCCAAG
1 CCGTGTAACTCTCTGAGTCACCTT-ACATACCCGTGTGCCAAG
* **
74693357 CCGTGTAACTTTCTGAGTCACCTTACATGTCCGTGTGCCAAG
1 CCGTGTAACTCTCTGAGTCACCTTACATACCCGTGTGCCAAG
74693399 CCGTGT
1 CCGTGT
74693405 GTTAGATCGT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 39 0.93
43 3 0.07
ACGTcount: A:0.19, C:0.29, G:0.23, T:0.29
Consensus pattern (42 bp):
CCGTGTAACTCTCTGAGTCACCTTACATACCCGTGTGCCAAG
Found at i:74696956 original size:21 final size:21
Alignment explanation
Indices: 74696930--74696969 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
74696920 TATCTATGAT
74696930 ATTATTATTAAGATTTTATAC
1 ATTATTATTAAGATTTTATAC
74696951 ATTATTATTAAGATTTTAT
1 ATTATTATTAAGATTTTAT
74696970 CTAAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (21 bp):
ATTATTATTAAGATTTTATAC
Found at i:74699883 original size:29 final size:29
Alignment explanation
Indices: 74699846--74699902 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
74699836 CACCTTGACA
* * *
74699846 CGAATTCTCAATGAACAAGTTCTTCATCG
1 CGAACTCTCAACGAACAAGTTCTCCATCG
74699875 CGAACTCTCAACGAACAAGTTCTCCATC
1 CGAACTCTCAACGAACAAGTTCTCCATC
74699903 TATTCCATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (29 bp):
CGAACTCTCAACGAACAAGTTCTCCATCG
Found at i:74701588 original size:22 final size:23
Alignment explanation
Indices: 74701560--74701606 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
74701550 ATGAAGGGAA
*
74701560 AAAAATTACCTAGAGCAACTCGG
1 AAAATTTACCTAGAGCAACTCGG
*
74701583 AAAATTTTACCTAGAGCAATTCGG
1 AAAA-TTTACCTAGAGCAACTCGG
74701607 CATTCATCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.23
Consensus pattern (23 bp):
AAAATTTACCTAGAGCAACTCGG
Found at i:74703796 original size:47 final size:45
Alignment explanation
Indices: 74703743--74703863 Score: 136
Period size: 47 Copynumber: 2.6 Consensus size: 45
74703733 TGGCCATGAT
74703743 ATGTGATAAGGCCGAATGGCCAATGTGATGA-ATGTGGAAGTGCATAC
1 ATGTGATAAGGCCGAATGGCCAATGTGAT-ATATGTGGAAGTG-A-AC
* ** * * *
74703790 ATGTGATAAGGCCGGATGGTTAATGTGATATATGTGTACGTGAAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATATATGTGGAAGTGAAC
*
74703835 ATGTGATAAGGCCGAATGACCAATTGTGA
1 ATGTGATAAGGCCGAATGGCCAA-TGTGA
74703864 AAAGCGTGCA
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 20 0.32
46 7 0.11
47 35 0.56
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (45 bp):
ATGTGATAAGGCCGAATGGCCAATGTGATATATGTGGAAGTGAAC
Found at i:74703994 original size:39 final size:40
Alignment explanation
Indices: 74703935--74704019 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
74703925 AAATGAATTG
* * * * *
74703935 TGCTGAGATTGTATCTGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
*
74703974 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
74704014 TGCTGG
1 TGCTGG
74704020 TAAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.20, G:0.32, T:0.31
Consensus pattern (40 bp):
TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:74709070 original size:9 final size:9
Alignment explanation
Indices: 74709056--74709083 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
74709046 TGATTCCACC
74709056 TTTAGAATT
1 TTTAGAATT
74709065 TTTAGAATT
1 TTTAGAATT
74709074 TTTAGAATT
1 TTTAGAATT
74709083 T
1 T
74709084 CAACTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TTTAGAATT
Found at i:74710419 original size:24 final size:24
Alignment explanation
Indices: 74710392--74710438 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
74710382 AAGAAACTGA
*
74710392 TAAATTT-ATTTAAATGAATTAAAC
1 TAAATTTGATGTAAA-GAATTAAAC
74710416 TAAATTTGATGTAAAGAATTAAA
1 TAAATTTGATGTAAAGAATTAAA
74710439 GATGTGGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.38
Consensus pattern (24 bp):
TAAATTTGATGTAAAGAATTAAAC
Found at i:74717886 original size:2 final size:2
Alignment explanation
Indices: 74717879--74717915 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
74717869 ATCTAAAATA
74717879 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
74717916 AAAGCTTAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:74722763 original size:64 final size:64
Alignment explanation
Indices: 74722686--74722816 Score: 253
Period size: 64 Copynumber: 2.0 Consensus size: 64
74722676 TTTATAAAAA
74722686 TTGCTGGAAAGTTATATTATCATGTTTGGTTCACTAAATACTTTTTTTAAAATGTAATGAAGCT
1 TTGCTGGAAAGTTATATTATCATGTTTGGTTCACTAAATACTTTTTTTAAAATGTAATGAAGCT
*
74722750 TTGCTGGAAAGTTATATTATCATGTTTGGTTCACTAAATACTTTTTTTAAAATGTAATGAATCT
1 TTGCTGGAAAGTTATATTATCATGTTTGGTTCACTAAATACTTTTTTTAAAATGTAATGAAGCT
74722814 TTG
1 TTG
74722817 GATTAAATAT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (64 bp):
TTGCTGGAAAGTTATATTATCATGTTTGGTTCACTAAATACTTTTTTTAAAATGTAATGAAGCT
Found at i:74723968 original size:17 final size:17
Alignment explanation
Indices: 74723948--74723980 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
74723938 AAGTTTTATT
74723948 TTATTTTATT-TATAATC
1 TTATTTT-TTATATAATC
74723965 TTATTTTTTATATAAT
1 TTATTTTTTATATAAT
74723981 TAATAATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATTTTTTATATAATC
Found at i:74724609 original size:51 final size:51
Alignment explanation
Indices: 74724533--74724635 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
74724523 ATAGATGTAA
74724533 TAAAGTTTGCATAAAAATGTTAAAATGTACAAAATAAATTAAAACAAAACT
1 TAAAGTTTGCATAAAAATGTTAAAATGTACAAAATAAATTAAAACAAAACT
74724584 TAAAGTTTGCATAAAAATGTTAAAATGTACAAAATAAATTAAAACAAAACT
1 TAAAGTTTGCATAAAAATGTTAAAATGTACAAAATAAATTAAAACAAAACT
74724635 T
1 T
74724636 TTGTTGCAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (51 bp):
TAAAGTTTGCATAAAAATGTTAAAATGTACAAAATAAATTAAAACAAAACT
Found at i:74725056 original size:70 final size:69
Alignment explanation
Indices: 74724975--74725115 Score: 174
Period size: 70 Copynumber: 2.0 Consensus size: 69
74724965 TTTTCGTAAT
* * *
74724975 TTCATCAATTGAATTGGTGTCACTTGACTCCTAATACCAAACTCAATCAAGGCTTTAATATTAGT
1 TTCATCAATTGAATTGGTCTCACTTGACTACTAACACCAAACTCAATCAAGGCTTTAA-ATTAGT
*
74725040 AGAGA
65 AAAGA
* * * ** * *
74725045 TTCATTAATTGAGTTGGTCTCACTTGACTAGTAACATGAAACTCAATCAGGGTTTTAAATTAGTA
1 TTCATCAATTGAATTGGTCTCACTTGACTACTAACACCAAACTCAATCAAGGCTTTAAATTAGTA
74725110 AAGA
66 AAGA
74725114 TT
1 TT
74725116 ATCGATATAT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
69 12 0.20
70 48 0.80
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Consensus pattern (69 bp):
TTCATCAATTGAATTGGTCTCACTTGACTACTAACACCAAACTCAATCAAGGCTTTAAATTAGTA
AAGA
Found at i:74730522 original size:15 final size:17
Alignment explanation
Indices: 74730502--74730533 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
74730492 GGCAGTAGGG
74730502 GCGGCGG-TG-GTGTGC
1 GCGGCGGCTGTGTGTGC
74730517 GCGGCGGCTGTGTGTGC
1 GCGGCGGCTGTGTGTGC
74730534 AGCAGCGGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 2 0.13
17 6 0.40
ACGTcount: A:0.00, C:0.22, G:0.56, T:0.22
Consensus pattern (17 bp):
GCGGCGGCTGTGTGTGC
Found at i:74730522 original size:18 final size:18
Alignment explanation
Indices: 74730501--74730554 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
74730491 TGGCAGTAGG
74730501 GGCGGCGGTGGTGTGCGC
1 GGCGGCGGTGGTGTGCGC
*
74730519 GGCGGCTGT-GTGTGCAGC
1 GGCGGCGGTGGTGTGC-GC
* *
74730537 AGCGGCGCTGGTGGTGCG
1 GGCGGCGGTGGT-GTGCG
74730555 TCACAGGATA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 6 0.21
18 16 0.55
19 3 0.10
20 4 0.14
ACGTcount: A:0.04, C:0.22, G:0.56, T:0.19
Consensus pattern (18 bp):
GGCGGCGGTGGTGTGCGC
Found at i:74732760 original size:18 final size:17
Alignment explanation
Indices: 74732728--74732762 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
74732718 AGGTTCAATG
*
74732728 TTCAAATTGAATTTGGT
1 TTCAAATTCAATTTGGT
74732745 TTCAATATTCAATTTGGT
1 TTCAA-ATTCAATTTGGT
74732763 ACCTAAACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.49
Consensus pattern (17 bp):
TTCAAATTCAATTTGGT
Found at i:74737044 original size:7 final size:7
Alignment explanation
Indices: 74737032--74737068 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
74737022 CGGAATTTCG
74737032 CTTTCTT
1 CTTTCTT
74737039 CTTTC-T
1 CTTTCTT
74737045 -TTT-TT
1 CTTTCTT
74737050 CTTTCTT
1 CTTTCTT
74737057 CTTTCTT
1 CTTTCTT
74737064 CTTTC
1 CTTTC
74737069 AGTTTTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 4 0.15
6 4 0.15
7 19 0.70
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (7 bp):
CTTTCTT
Found at i:74737055 original size:18 final size:18
Alignment explanation
Indices: 74737032--74737068 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
74737022 CGGAATTTCG
*
74737032 CTTTCTTCTTTCTTTTTT
1 CTTTCTTCTTTCTTCTTT
74737050 CTTTCTTCTTTCTTCTTT
1 CTTTCTTCTTTCTTCTTT
74737068 C
1 C
74737069 AGTTTTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (18 bp):
CTTTCTTCTTTCTTCTTT
Found at i:74747444 original size:3 final size:3
Alignment explanation
Indices: 74747436--74747462 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
74747426 ATAGTTAGTA
74747436 TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG
74747463 AAATAGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:74747776 original size:21 final size:21
Alignment explanation
Indices: 74747713--74747777 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
74747703 CGATTTTTTA
* *
74747713 AAATTAATTCTTTGCTTATTT
1 AAATCAATTATTTGCTTATTT
*
74747734 CAATCAATTATTTG-TTATTTT
1 AAATCAATTATTTGCTTA-TTT
* *
74747755 AAATCGATTATTTGCTTCTTT
1 AAATCAATTATTTGCTTATTT
74747776 AA
1 AA
74747778 TTGATTCATT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 3 0.08
21 31 0.86
22 2 0.06
ACGTcount: A:0.29, C:0.11, G:0.06, T:0.54
Consensus pattern (21 bp):
AAATCAATTATTTGCTTATTT
Found at i:74747809 original size:20 final size:20
Alignment explanation
Indices: 74747780--74747825 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
74747770 TTCTTTAATT
74747780 GATTCATTATTGTTTGAA-TC
1 GATTCATTATTGTTT-AACTC
*
74747800 GATTCTTTATTGTTTAACTC
1 GATTCATTATTGTTTAACTC
74747820 GATTCA
1 GATTCA
74747826 AACTCCAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.50
Consensus pattern (20 bp):
GATTCATTATTGTTTAACTC
Found at i:74750100 original size:27 final size:26
Alignment explanation
Indices: 74750040--74750194 Score: 184
Period size: 27 Copynumber: 5.7 Consensus size: 26
74750030 TGGCTGCCAG
* *
74750040 AATGTGACAGAGTCACCAGATACAGAT
1 AATGTGGCAGAGCCACCAGA-ACAGAT
74750067 AATTGTGGCAGAGCCACCAGAACAGAT
1 AA-TGTGGCAGAGCCACCAGAACAGAT
*
74750094 ATATGTGGCAGAGCCACCAGATCAGAT
1 A-ATGTGGCAGAGCCACCAGAACAGAT
*
74750121 AATCGTGGCATAGCCACCAGAACAGAT
1 AAT-GTGGCAGAGCCACCAGAACAGAT
* *
74750148 ATATGTGGCAAAGCCACCAGATCAGAT
1 A-ATGTGGCAGAGCCACCAGAACAGAT
* *
74750175 AATTGTGACATAGCCACCAG
1 AA-TGTGGCAGAGCCACCAG
74750195 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 9, Indels: 10
0.86 0.07 0.08
Matches are distributed among these distances:
26 3 0.03
27 92 0.81
28 19 0.17
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
AATGTGGCAGAGCCACCAGAACAGAT
Found at i:74750136 original size:54 final size:54
Alignment explanation
Indices: 74750041--74750194 Score: 245
Period size: 54 Copynumber: 2.8 Consensus size: 54
74750031 GGCTGCCAGA
* * *
74750041 ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCACCAGAACAGATAT
1 ATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATAT
*
74750096 ATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATAT
1 ATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATAT
* *
74750150 ATGTGGCAAAGCCACCAGATCAGATAATTGTGACATAGCCACCAG
1 ATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
74750195 GACGCTTCCT
Statistics
Matches: 92, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
54 74 0.80
55 18 0.20
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
ATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATAT
Found at i:74751805 original size:26 final size:26
Alignment explanation
Indices: 74751774--74751881 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
74751764 TGAAATGCCC
*
74751774 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
74751800 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
74751826 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
74751852 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74751878 ATCA
1 ATCA
74751882 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:74753875 original size:33 final size:33
Alignment explanation
Indices: 74753807--74753956 Score: 111
Period size: 33 Copynumber: 4.7 Consensus size: 33
74753797 TTTATTTGTA
* * * **
74753807 TTAATTATTTTATGTATCATTATATCAAACCAT
1 TTAAATATTTCATGTATCATTATATTAAGTCAT
*
74753840 TTAAATATTTCATGTATCATTATATTAAGTTAT
1 TTAAATATTTCATGTATCATTATATTAAGTCAT
* *
74753873 TTAAATA--CCAT-TTTCATTATATTATA-TCAT
1 TTAAATATTTCATGTATCATTATATTA-AGTCAT
*
74753903 TTAAATATAATTCAT-TA-C--TATATTTAAG-CTT
1 TTAAATAT--TTCATGTATCATTATA-TTAAGTCAT
74753934 TTAAAATATTTCATGTATCATTA
1 TT-AAATATTTCATGTATCATTA
74753957 ATTTTACAAA
Statistics
Matches: 93, Mismatches: 12, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
30 27 0.29
31 15 0.16
32 10 0.11
33 35 0.38
34 6 0.06
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.49
Consensus pattern (33 bp):
TTAAATATTTCATGTATCATTATATTAAGTCAT
Found at i:74756479 original size:18 final size:18
Alignment explanation
Indices: 74756458--74756502 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
74756448 AGAGGAAGAG
*
74756458 AGAAAAAGAGAAAAAAAA
1 AGAAGAAGAGAAAAAAAA
74756476 AGAAGAAGAGAAAAAAAA
1 AGAAGAAGAGAAAAAAAA
74756494 AGAAGAAGA
1 AGAAGAAGA
74756503 AATAAATGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (18 bp):
AGAAGAAGAGAAAAAAAA
Found at i:74758263 original size:15 final size:16
Alignment explanation
Indices: 74758236--74758265 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74758226 AACATTTAAA
74758236 ATTTTTTATAATATTC
1 ATTTTTTATAATATTC
74758252 ATTTTTTA-AATATT
1 ATTTTTTATAATATT
74758266 TTGTCATACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (16 bp):
ATTTTTTATAATATTC
Found at i:74767237 original size:17 final size:17
Alignment explanation
Indices: 74767215--74767253 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
74767205 TATAATTAAT
74767215 TTTAAAAGGTTAATATA
1 TTTAAAAGGTTAATATA
**
74767232 TTTAAAATTTTAATATA
1 TTTAAAAGGTTAATATA
*
74767249 CTTAA
1 TTTAA
74767254 TATATATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (17 bp):
TTTAAAAGGTTAATATA
Found at i:74767313 original size:9 final size:9
Alignment explanation
Indices: 74767301--74767397 Score: 51
Period size: 10 Copynumber: 10.7 Consensus size: 9
74767291 TAATATATTT
74767301 AAAATTTTA
1 AAAATTTTA
74767310 AAAATTTTAA
1 AAAATTTT-A
*
74767320 AAAAATTTA
1 AAAATTTTA
* *
74767329 AATATATTA
1 AAAATTTTA
*
74767338 GAAAATGTT-
1 -AAAATTTTA
*
74767347 -AAA-TATA
1 AAAATTTTA
*
74767354 ACTAATTTT-
1 A-AAATTTTA
74767363 AAAATTTT-
1 AAAATTTTA
74767371 AAAATATTTA
1 AAAAT-TTTA
74767381 AAATATTTTA
1 AAA-ATTTTA
74767391 AGAAATT
1 A-AAATT
74767398 AAATATATTA
Statistics
Matches: 67, Mismatches: 11, Indels: 19
0.69 0.11 0.20
Matches are distributed among these distances:
6 1 0.01
7 3 0.04
8 11 0.16
9 21 0.31
10 27 0.40
11 4 0.06
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (9 bp):
AAAATTTTA
Found at i:74767342 original size:19 final size:19
Alignment explanation
Indices: 74767292--74767424 Score: 59
Period size: 18 Copynumber: 7.3 Consensus size: 19
74767282 AGATTTTCTT
* *
74767292 AATATATT-TAAAATTTTA
1 AATATATTAAAAAAATTTA
* *
74767310 AAAATTTTAAAAAAATTTA
1 AATATATTAAAAAAATTTA
*
74767329 AATATATT-AGAAAATGTT-
1 AATATATTAAAAAAAT-TTA
** *
74767347 AA-ATA-TAACTAATTTTA
1 AATATATTAAAAAAATTTA
* *
74767364 AA-AT-TTTAAAATATTTA
1 AATATATTAAAAAAATTTA
* *
74767381 AA-ATATTTTAAGAAA-TTA
1 AATATA-TTAAAAAAATTTA
74767399 AATATATTAAAAAAATGTTA
1 AATATATTAAAAAAAT-TTA
*
74767419 AGTATA
1 AATATA
74767425 ACCAATTTTA
Statistics
Matches: 85, Mismatches: 20, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
16 3 0.04
17 22 0.26
18 26 0.31
19 26 0.31
20 8 0.09
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.41
Consensus pattern (19 bp):
AATATATTAAAAAAATTTA
Found at i:74767400 original size:70 final size:72
Alignment explanation
Indices: 74767298--74767449 Score: 204
Period size: 71 Copynumber: 2.2 Consensus size: 72
74767288 TCTTAATATA
* *
74767298 TTTAAAAT-TTTAAAAATTTTAAAAAAATTTAAATATATT-AGAAAATGTTAAATATAACTAATT
1 TTTAAAATATTTAAAAATTTTAAAAAAATTTAAATATATTAAAAAAATGTTAAATATAACCAATT
74767361 TTAAAAT
66 TTAAAAT
* *
74767368 TTTAAAATATTTAAAATATTTT-AAGAAA-TTAAATATATTAAAAAAATGTTAAGTATAACCAAT
1 TTTAAAATATTTAAAA-ATTTTAAAAAAATTTAAATATATTAAAAAAATGTTAAATATAACCAAT
**
74767431 TTTAATTT
65 TTTAAAAT
*
74767439 TTTAATATATT
1 TTTAAAATATT
74767450 CAATATTTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
70 19 0.26
71 48 0.67
72 5 0.07
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.43
Consensus pattern (72 bp):
TTTAAAATATTTAAAAATTTTAAAAAAATTTAAATATATTAAAAAAATGTTAAATATAACCAATT
TTAAAAT
Found at i:74767643 original size:69 final size:69
Alignment explanation
Indices: 74767553--74767703 Score: 198
Period size: 70 Copynumber: 2.2 Consensus size: 69
74767543 CCTATTAAAA
* * * *
74767553 AATATATTAAAATATTAAAATTTT-AAATTTGGTTATACTTAA-ATTTTTTTTAAAATGTTCAAA
1 AATATATTAAAATATTAAAATTTTAAAATAT-GTTATACTCAACATTTTCTTTAAAATATTCAAA
74767616 ATTTT
65 ATTTT
* * *
74767621 AATATATTAAGTATATTAAAATTTTAAAATATGTTATACTCAACATTTTCTTTAACATATTTAAA
1 AATATATTAA-AATATTAAAATTTTAAAATATGTTATACTCAACATTTTCTTTAAAATATTCAAA
74767686 ATTTT
65 ATTTT
*
74767691 AATATATTTAAAT
1 AATATATTAAAAT
74767704 TTTTTTTGTG
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
68 10 0.14
69 25 0.35
70 36 0.51
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (69 bp):
AATATATTAAAATATTAAAATTTTAAAATATGTTATACTCAACATTTTCTTTAAAATATTCAAAA
TTTT
Found at i:74767707 original size:17 final size:17
Alignment explanation
Indices: 74767671--74767706 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
74767661 CAACATTTTC
74767671 TTTAACATATTTAAAAT
1 TTTAACATATTTAAAAT
*
74767688 TTTAATATATTT-AAAT
1 TTTAACATATTTAAAAT
74767704 TTT
1 TTT
74767707 TTTTGTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTAACATATTTAAAAT
Found at i:74767973 original size:18 final size:17
Alignment explanation
Indices: 74767927--74767965 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
74767917 AAAATATATA
*
74767927 TTAAGTATATTAAAATT
1 TTAAATATATTAAAATT
74767944 TTAAATATATTAAAATT
1 TTAAATATATTAAAATT
74767961 TTAAA
1 TTAAA
74767966 ATTAATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
TTAAATATATTAAAATT
Found at i:74767996 original size:42 final size:41
Alignment explanation
Indices: 74767926--74768006 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 41
74767916 AAAAATATAT
74767926 ATTAAGTATATTAAAATTTTAAATATA-TTAAAATTTTAAA
1 ATTAAGTATATTAAAATTTTAAATATATTTAAAATTTTAAA
* * * *
74767966 ATTAATTATACTTAATATTTTTTAATATATTTAAACTTTTA
1 ATTAAGTATA-TTAA-AATTTTAAATATATTTAAAATTTTA
74768007 GAAAATAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 9 0.26
41 4 0.12
42 11 0.32
43 10 0.29
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (41 bp):
ATTAAGTATATTAAAATTTTAAATATATTTAAAATTTTAAA
Found at i:74768006 original size:146 final size:152
Alignment explanation
Indices: 74767714--74768006 Score: 355
Period size: 146 Copynumber: 2.0 Consensus size: 152
74767704 TTTTTTTGTG
*
74767714 TTTTTTAAAATTTTAAATATATTAAAAAATCTTTTTTCTCTTTACCTATTAAAAATCTATTAAAA
1 TTTTTTAAAATTTTAAATATATTAAAAAATCTTTTTTCTCTTTACCTATTAAAAATATATTAAAA
* * * * **
74767779 ATTTAAAATACATTTTTAAAAAAGATATTGAATATATTAAAATTTGTTATACTTAACATTTTTTA
66 ATGTAAAATAAAATTTT--AAAAGATATTGAAAATATTAAAATTAATTATACTTAACATTTTTTA
**
74767844 ATATATTTAATTTTTTAAAATATA
129 ATATATTTAAACTTTTAAAATATA
** * **
74767868 TTTTTTAAAATTTTAAATATATT-ACGAAT-TTTTTTGTCTTTACCTATTAAAAATATA-TATTA
1 TTTTTTAAAATTTTAAATATATTAAAAAATCTTTTTTCTCTTTACCTATTAAAAATATATTAAAA
* * * * *
74767930 A-GTATATTAAAATTTT-AAATATATT-AAAATTTTAAAATTAATTATACTTAATATTTTTTAAT
66 ATGTAAAATAAAATTTTAAAAGATATTGAAAATATTAAAATTAATTATACTTAACATTTTTTAAT
74767992 ATATTTAAACTTTTA
131 ATATTTAAACTTTTA
74768007 GAAAATAAAA
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
146 45 0.38
147 8 0.07
150 10 0.08
151 4 0.03
152 26 0.22
153 4 0.03
154 23 0.19
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (152 bp):
TTTTTTAAAATTTTAAATATATTAAAAAATCTTTTTTCTCTTTACCTATTAAAAATATATTAAAA
ATGTAAAATAAAATTTTAAAAGATATTGAAAATATTAAAATTAATTATACTTAACATTTTTTAAT
ATATTTAAACTTTTAAAATATA
Found at i:74782231 original size:53 final size:53
Alignment explanation
Indices: 74782174--74782387 Score: 428
Period size: 53 Copynumber: 4.0 Consensus size: 53
74782164 ATTTTATGTT
74782174 ATTTTTTTTTATTTTTTTACTTAGATAGTGGATATGTCATAGTACTAATATTG
1 ATTTTTTTTTATTTTTTTACTTAGATAGTGGATATGTCATAGTACTAATATTG
74782227 ATTTTTTTTTATTTTTTTACTTAGATAGTGGATATGTCATAGTACTAATATTG
1 ATTTTTTTTTATTTTTTTACTTAGATAGTGGATATGTCATAGTACTAATATTG
74782280 ATTTTTTTTTATTTTTTTACTTAGATAGTGGATATGTCATAGTACTAATATTG
1 ATTTTTTTTTATTTTTTTACTTAGATAGTGGATATGTCATAGTACTAATATTG
74782333 ATTTTTTTTTATTTTTTTACTTAGATAGTGGATATGTCATAGTACTAATATTG
1 ATTTTTTTTTATTTTTTTACTTAGATAGTGGATATGTCATAGTACTAATATTG
74782386 AT
1 AT
74782388 AATATATAAT
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 161 1.00
ACGTcount: A:0.27, C:0.06, G:0.13, T:0.55
Consensus pattern (53 bp):
ATTTTTTTTTATTTTTTTACTTAGATAGTGGATATGTCATAGTACTAATATTG
Found at i:74782586 original size:16 final size:16
Alignment explanation
Indices: 74782541--74782587 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
74782531 AAATTTACAA
**
74782541 AAAAAAAATTAAACCT
1 AAAAAAAATTAAATTT
74782557 AAAAAAAATT--ATTT
1 AAAAAAAATTAAATTT
74782571 AAAAAAAATTAAATTT
1 AAAAAAAATTAAATTT
74782587 A
1 A
74782588 CTACTTCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 12 0.44
16 15 0.56
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAAAAAATTAAATTT
Found at i:74785119 original size:3 final size:3
Alignment explanation
Indices: 74785111--74785178 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
74785101 TGGGTTAGGG
74785111 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
74785159 GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GA
74785179 TGGACGCACC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:74788649 original size:61 final size:61
Alignment explanation
Indices: 74788546--74788691 Score: 147
Period size: 61 Copynumber: 2.4 Consensus size: 61
74788536 TTGGTCTAAT
* * * * *
74788546 AATAAATTTAGCTCTCTAATATTTACATATTGTATCAATTTAATCCTAAA-TGTAAAAAACCC
1 AATAAATTTAACCCTC-AATATTTAAAAATTGTATCAATTTAAT-CTAAATTCTAAAAAACCC
* * ***
74788608 AATAAATTTAACCCTCAATATTTATAAAATTG-ATCATTTTAATTTAAATTCTAAAAAGTTC
1 AATAAATTTAACCCTCAATATTTA-AAAATTGTATCAATTTAATCTAAATTCTAAAAAACCC
74788669 AATAAATTTAACCCT-AAT-TTTAA
1 AATAAATTTAACCCTCAATATTTAA
74788692 TTTTTAAAAA
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
58 1 0.01
59 4 0.06
60 7 0.10
61 41 0.57
62 19 0.26
ACGTcount: A:0.44, C:0.14, G:0.03, T:0.39
Consensus pattern (61 bp):
AATAAATTTAACCCTCAATATTTAAAAATTGTATCAATTTAATCTAAATTCTAAAAAACCC
Found at i:74808384 original size:523 final size:524
Alignment explanation
Indices: 74807662--74808618 Score: 1853
Period size: 523 Copynumber: 1.8 Consensus size: 524
74807652 ATCTTTGGTG
74807662 TACTGCGTATGCTCATGTTGATAATGGAAAATTGGATCCGAGATCCATTAAATGCGTCTTTCTTG
1 TACTGCGTATGCTCATGTTGATAATGGAAAATTGGATCCGAGATCCATTAAATGCGTCTTTCTTG
74807727 GTTATAAAGCTGGTGTAAAAGGGTATAAGTTATGGTGTCTTGAAAATAGAAAAGTTGTGATTAGC
66 GTTATAAAGCTGGTGTAAAAGGGTATAAGTTATGGTGTCTTGAAAATAGAAAAGTTGTGATTAGC
74807792 AGAGATGTTGTTTTTGATGAAACTACTATGCTACCTAACTTATCTCTTAAAGACTCTTCCAATAA
131 AGAGATGTTGTTTTTGATGAAACTACTATGCTACCTAACTTATCTCTTAAAGACTCTTCCAATAA
* * *
74807857 AGAAAATCAAAAGCAGGTGGAGTATCAGATTAATACAGAGTCAACTCTTCAAGCCAGTACAAAAA
196 AGAAAATCAAAAGCAGGTGGAGCATCAGATTAATACAGAGTCAACTCCTCAAGCCAGAACAAAAA
* *
74807922 TTGAGAATAGAGTTGCTTCTTTACCACAATACTCTATCGTC-AAAACAGAACTAGAAGAGAAATT
261 TTGAGAATAGAGTTGCTTCTTCACCACAATACTCTATCGCCAAAAACAGAACTAGAAGAGAAATT
74807986 AAACCTCCAAAGAAGTATGCCGAGGCTGATCTAGTTGCTTATGCTTTAAATGTGGCTGAAGATAT
326 AAACCTCCAAAGAAGTATGCCGAGGCTGATCTAGTTGCTTATGCTTTAAATGTGGCTGAAGATAT
74808051 AGATGCGAATCAAGAGCCATCTAATTATTCTGAGGCGGTTAGCTTTGTTGCAAAGGGTTATGGTC
391 AGATGCGAATCAAGAGCCATCTAATTATTCTGAGGCGGTTAGCTTTGTTGCAAAGGGTTATGGTC
74808116 AAATTCCAGGAGTGAACTTCACAGATGTGTTCTCCCTAGTTGTGAAGCATAGTTTGATTCGAGCT
456 AAATTCCAGGAGTGAACTTCACAGATGTGTTCTCCCTAGTTGTGAAGCATAGTTTGATTCGAGCT
74808181 TTGC
521 TTGC
74808185 TACTGCGTATGCTCATGTTGATAATGGAAAATTGGATCCGAGATCCATTAAATGCGTCTTTCTTG
1 TACTGCGTATGCTCATGTTGATAATGGAAAATTGGATCCGAGATCCATTAAATGCGTCTTTCTTG
74808250 GTTATAAAGCTGGTGTAAAAGGGTATAAGTTATGGTGTCTTGAAAATAGAAAAGTTGTGATTAGC
66 GTTATAAAGCTGGTGTAAAAGGGTATAAGTTATGGTGTCTTGAAAATAGAAAAGTTGTGATTAGC
*
74808315 AGAGATGTTGTTTTTGATGAAACTGCTATGCTACCTAACTTATCTCTTAAAGACTCTTCCAATAA
131 AGAGATGTTGTTTTTGATGAAACTACTATGCTACCTAACTTATCTCTTAAAGACTCTTCCAATAA
74808380 AGAAAATCAAAAGCAGGTGGAGCATCAGATTAATACAGAGTCAACTCCTCAAGCCAGAACAAAAA
196 AGAAAATCAAAAGCAGGTGGAGCATCAGATTAATACAGAGTCAACTCCTCAAGCCAGAACAAAAA
74808445 TTGAGAATAGAGTTGCTTCTTCACCACAATACTCTATCGCCAAAAACAGAACTAGAAGAGAAATT
261 TTGAGAATAGAGTTGCTTCTTCACCACAATACTCTATCGCCAAAAACAGAACTAGAAGAGAAATT
74808510 AAACCTCCAAAGAAGTATGCCGAGGCTGATCTAGTTGCTTATGCTTTAAATGTGGCTGAAGATAT
326 AAACCTCCAAAGAAGTATGCCGAGGCTGATCTAGTTGCTTATGCTTTAAATGTGGCTGAAGATAT
74808575 AGATGCGAATCAAGAGCCATCTAATTATTCTGAGGCGGTTAGCT
391 AGATGCGAATCAAGAGCCATCTAATTATTCTGAGGCGGTTAGCT
74808619 GTGAAGACTC
Statistics
Matches: 427, Mismatches: 6, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
523 295 0.69
524 132 0.31
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (524 bp):
TACTGCGTATGCTCATGTTGATAATGGAAAATTGGATCCGAGATCCATTAAATGCGTCTTTCTTG
GTTATAAAGCTGGTGTAAAAGGGTATAAGTTATGGTGTCTTGAAAATAGAAAAGTTGTGATTAGC
AGAGATGTTGTTTTTGATGAAACTACTATGCTACCTAACTTATCTCTTAAAGACTCTTCCAATAA
AGAAAATCAAAAGCAGGTGGAGCATCAGATTAATACAGAGTCAACTCCTCAAGCCAGAACAAAAA
TTGAGAATAGAGTTGCTTCTTCACCACAATACTCTATCGCCAAAAACAGAACTAGAAGAGAAATT
AAACCTCCAAAGAAGTATGCCGAGGCTGATCTAGTTGCTTATGCTTTAAATGTGGCTGAAGATAT
AGATGCGAATCAAGAGCCATCTAATTATTCTGAGGCGGTTAGCTTTGTTGCAAAGGGTTATGGTC
AAATTCCAGGAGTGAACTTCACAGATGTGTTCTCCCTAGTTGTGAAGCATAGTTTGATTCGAGCT
TTGC
Found at i:74811045 original size:36 final size:36
Alignment explanation
Indices: 74811005--74811077 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
74810995 GTAAGTTAAA
74811005 CAAGTAAAGTGTAAGTCTTTTAAAAATCTTGTAGTT
1 CAAGTAAAGTGTAAGTCTTTTAAAAATCTTGTAGTT
*
74811041 CAAGTAGAGTGTAAGTCTTTTAAAAATCTTGTAGTT
1 CAAGTAAAGTGTAAGTCTTTTAAAAATCTTGTAGTT
74811077 C
1 C
74811078 TTCTTGCATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (36 bp):
CAAGTAAAGTGTAAGTCTTTTAAAAATCTTGTAGTT
Found at i:74825770 original size:19 final size:20
Alignment explanation
Indices: 74825735--74825772 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
74825725 GTTTCTAAAT
74825735 TTTAATAAGTATTTATAATC
1 TTTAATAAGTATTTATAATC
*
74825755 TTTAATAA-TTTTTATAAT
1 TTTAATAAGTATTTATAAT
74825773 ATTTTGAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (20 bp):
TTTAATAAGTATTTATAATC
Found at i:74826313 original size:134 final size:136
Alignment explanation
Indices: 74826064--74826315 Score: 316
Period size: 134 Copynumber: 1.9 Consensus size: 136
74826054 AAAAGGCTAA
* *
74826064 TAGTGTGACTTTTTAAAAGATTTAATTGATTTTTTTTACTAAAAGTGTTTTATCCTTAAAACTAA
1 TAGTGTGAATTTTTAAAAGATTTAATTGAATTTTTTTACTAAAAGTGTTTTATCCTTAAAACTAA
** * ** *
74826129 AAAAAAAACGACAATACTCCTTTTTTTTCTAATATCAGGGGTCATTTTATTTTAATTTAATGATT
66 AAAAAAAACGACAATACTCCTTTAATTTCTAAGATCAGGGACCATCTTATTTTAATTTAATGATT
74826194 AAGGGC
131 AAGGGC
* * *
74826200 TAGTGTGAATTTTTAAAAGATTTAATT-AATTTTTTTACTAAGA-T-TTTTTTTCTATAAAACTA
1 TAGTGTGAATTTTTAAAAGATTTAATTGAATTTTTTTACTAAAAGTGTTTTATCCT-TAAAACTA
* * *
74826262 AAAAAAAAACGATAATACTTCTATTAATTTCTAACGA-GAGGGACCA-CTTATTTT
65 AAAAAAAAACGACAATACTCCT-TTAATTTCTAA-GATCAGGGACCATCTTATTTT
74826316 TATGATTAAG
Statistics
Matches: 99, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
133 7 0.07
134 36 0.36
135 29 0.29
136 27 0.27
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.43
Consensus pattern (136 bp):
TAGTGTGAATTTTTAAAAGATTTAATTGAATTTTTTTACTAAAAGTGTTTTATCCTTAAAACTAA
AAAAAAAACGACAATACTCCTTTAATTTCTAAGATCAGGGACCATCTTATTTTAATTTAATGATT
AAGGGC
Found at i:74827396 original size:22 final size:22
Alignment explanation
Indices: 74827355--74827413 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
74827345 GTTTTAATAA
* *
74827355 TTGTTTTAGTA-TCATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
74827376 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
74827398 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
74827414 GATTTATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.48
22 10 0.30
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.68
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:74827412 original size:20 final size:22
Alignment explanation
Indices: 74827368--74827413 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
74827358 TTTTAGTATC
* *
74827368 ATTTTTATTTGTTTTAATATTT
1 ATTTTTATGTGTTTTAATATAT
74827390 ATTTTTATGT-TTTTAA-ATAT
1 ATTTTTATGTGTTTTAATATAT
74827410 ATTT
1 ATTT
74827414 GATTTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 6 0.27
22 9 0.41
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (22 bp):
ATTTTTATGTGTTTTAATATAT
Found at i:74827430 original size:26 final size:24
Alignment explanation
Indices: 74827384--74827443 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
74827374 ATTTGTTTTA
*
74827384 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
74827408 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
74827434 TTTTTTATTT
1 ATATTTATTT
74827444 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:74831487 original size:21 final size:21
Alignment explanation
Indices: 74831434--74831496 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
74831424 AAGCTGCACA
* *
74831434 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGTTGAACG
* * *
74831455 GAAACCCGTAAGTGTTGAACG
1 GAAGCACATAAGTGTTGAACG
* *
74831476 GAAGCTCATAAGAGTTGAACG
1 GAAGCACATAAGTGTTGAACG
74831497 AAAAACCATA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.38, C:0.17, G:0.27, T:0.17
Consensus pattern (21 bp):
GAAGCACATAAGTGTTGAACG
Found at i:74831522 original size:42 final size:42
Alignment explanation
Indices: 74831476--74831582 Score: 137
Period size: 42 Copynumber: 2.6 Consensus size: 42
74831466 GTGTTGAACG
*
74831476 GAAGCTCATAAGAGTTGAAC-GAAAAACCATAAGGGTTAAACT
1 GAAGCTCATAAGAGTTGAACTG-AAAACCAGAAGGGTTAAACT
* * *
74831518 GAAGCTCAAAAGAGCTGAACTGAAACCCAGAAGGGTTAAACT
1 GAAGCTCATAAGAGTTGAACTGAAAACCAGAAGGGTTAAACT
* *
74831560 GAAACTCATATGAGTT-AACTGAA
1 GAAGCTCATAAGAGTTGAACTGAA
74831583 GCTCATGAGA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 7 0.12
42 48 0.86
43 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.19
Consensus pattern (42 bp):
GAAGCTCATAAGAGTTGAACTGAAAACCAGAAGGGTTAAACT
Found at i:74831576 original size:21 final size:21
Alignment explanation
Indices: 74831480--74831598 Score: 82
Period size: 21 Copynumber: 5.7 Consensus size: 21
74831470 TGAACGGAAG
*
74831480 CTCATAAGAGTTGAAC-GAAAAA
1 CTCATAAGAGTTAAACTG--AAA
* *
74831502 C-CATAAGGGTTAAACTGAAG
1 CTCATAAGAGTTAAACTGAAA
* * *
74831522 CTCAAAAGAGCTGAACTGAAA
1 CTCATAAGAGTTAAACTGAAA
* * *
74831543 CCCAGAAGGGTTAAACTGAAA
1 CTCATAAGAGTTAAACTGAAA
* *
74831564 CTCATATGAGTT-AACTGAAG
1 CTCATAAGAGTTAAACTGAAA
* *
74831584 CTCATGAGAGCTAAA
1 CTCATAAGAGTTAAA
74831599 TGGAAAGTAA
Statistics
Matches: 73, Mismatches: 21, Indels: 7
0.72 0.21 0.07
Matches are distributed among these distances:
20 19 0.26
21 52 0.71
22 2 0.03
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.19
Consensus pattern (21 bp):
CTCATAAGAGTTAAACTGAAA
Found at i:74833050 original size:2 final size:2
Alignment explanation
Indices: 74833045--74833074 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
74833035 TATATATATA
74833045 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
74833075 CAAATATGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:74836717 original size:57 final size:58
Alignment explanation
Indices: 74836619--74836779 Score: 225
Period size: 58 Copynumber: 2.8 Consensus size: 58
74836609 ATTGATTTAT
* *
74836619 TTTTGAATATATTTGTATAAACTATTTTTATATTGTTTCATTTAATAAAA-AAAAGTTC
1 TTTTGAATATATTTGTACAAATTA-TTTTATATTGTTTCATTTAATAAAATAAAAGTTC
* *
74836677 TTTTCAATATTTTTGTACAAATTATTTTATATTGTTTCATTTAATAAAATAAAAGTTC
1 TTTTGAATATATTTGTACAAATTATTTTATATTGTTTCATTTAATAAAATAAAAGTTC
* ** *
74836735 TTTTGAATATGTTCATACAAATTATTTTTTCATTGTTTCATTTAA
1 TTTTGAATATATTTGTACAAATTATTTTAT-ATTGTTTCATTTAA
74836780 CAAATTAGAA
Statistics
Matches: 92, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
57 25 0.27
58 53 0.58
59 14 0.15
ACGTcount: A:0.35, C:0.07, G:0.06, T:0.52
Consensus pattern (58 bp):
TTTTGAATATATTTGTACAAATTATTTTATATTGTTTCATTTAATAAAATAAAAGTTC
Found at i:74837165 original size:16 final size:16
Alignment explanation
Indices: 74837144--74837175 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74837134 AACCTCATTC
*
74837144 ATGATGCTGTATTGCT
1 ATGATGCTATATTGCT
74837160 ATGATGCTATATTGCT
1 ATGATGCTATATTGCT
74837176 TCAATGCACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.12, G:0.22, T:0.44
Consensus pattern (16 bp):
ATGATGCTATATTGCT
Found at i:74838726 original size:156 final size:156
Alignment explanation
Indices: 74838408--74838726 Score: 414
Period size: 156 Copynumber: 2.1 Consensus size: 156
74838398 CCAATTGAGG
* * *
74838408 GCTTTTTTAGTACTTTTGCTGATAGTGCATCCTGCTTGAAGTATTTTTCAACCCCAACTATTAGA
1 GCTTTTTTAGTACTTTTCCTGATAGTGCATCCTGCTTGAAGCATTTTTAAACCCCAACTATTAGA
* * *
74838473 TTTCCCATGAATCCCGTGATATTCTTTCAGAACTATCTTCTCAATTTTTTTTTTCAGAATCAACT
66 TTTCCCATGAATCCCGGGATATTCTTTCAGAACCATATTCTCAATTTTTTTTTTCAGAATCAACT
* * *
74838538 GTACAAAAAAAAGCGTCCAGTTGGGA
131 GTACAAAAAAAAGAGTCCACTTGGAA
* * * *
74838564 GCTTTTTCAGTAC-TTTCCTTGATAGTGCATCTTGCTTGAAGCGTTTTTAAACCCTAACTATTAG
1 GCTTTTTTAGTACTTTTCC-TGATAGTGCATCCTGCTTGAAGCATTTTTAAACCCCAACTATTAG
* ***
74838628 ATTTCTCGA-GAATTTGGGGATACTT-TTTCAGAACCATATTCTCAATTTCTTTTTTT-AGAATC
65 ATTTC-CCATGAATCCCGGGATA-TTCTTTCAGAACCATATTCTCAATTT-TTTTTTTCAGAATC
74838690 AACTGTAC-AAAAAAAGAGTCCACTTGGAA
127 AACTGTACAAAAAAAAGAGTCCACTTGGAA
74838719 GCTTTTTT
1 GCTTTTTT
74838727 TTTGTACAAT
Statistics
Matches: 141, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
155 29 0.21
156 101 0.72
157 11 0.08
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.39
Consensus pattern (156 bp):
GCTTTTTTAGTACTTTTCCTGATAGTGCATCCTGCTTGAAGCATTTTTAAACCCCAACTATTAGA
TTTCCCATGAATCCCGGGATATTCTTTCAGAACCATATTCTCAATTTTTTTTTTCAGAATCAACT
GTACAAAAAAAAGAGTCCACTTGGAA
Found at i:74844547 original size:23 final size:23
Alignment explanation
Indices: 74844516--74844630 Score: 126
Period size: 23 Copynumber: 4.9 Consensus size: 23
74844506 CTGATTCGTA
*
74844516 AGAGCTTACTGTTTCAGCTCATT
1 AGAGCTTACTGTTTCAGCTCAAT
* *
74844539 GGAGCTTACTGATTCAGCTCGAA-
1 AGAGCTTACTGTTTCAGCTC-AAT
74844562 AGAGCTTACTG-TTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
* *
74844584 AGAGCTTACCGTTTTTAGCTCAAT
1 AGAGCTTACTG-TTTCAGCTCAAT
*
74844608 AGAGCTTATTGTTTATCAGCTCA
1 AGAGCTTACTG-TT-TCAGCTCA
74844631 GGAGGAGCGT
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
21 2 0.03
22 18 0.23
23 28 0.36
24 23 0.29
25 7 0.09
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:74844621 original size:24 final size:25
Alignment explanation
Indices: 74844574--74844630 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
74844564 AGCTTACTGT
74844574 TCAGCTCAATAGAGCTTACCGTTT-
1 TCAGCTCAATAGAGCTTACCGTTTA
* **
74844598 TTAGCTCAATAGAGCTTATTGTTTA
1 TCAGCTCAATAGAGCTTACCGTTTA
74844623 TCAGCTCA
1 TCAGCTCA
74844631 GGAGGAGCGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (25 bp):
TCAGCTCAATAGAGCTTACCGTTTA
Found at i:74848644 original size:21 final size:21
Alignment explanation
Indices: 74848620--74848684 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
74848610 AAGTTTAGCT
*
74848620 GAAGCACATAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACG
*
74848641 GAAGC-C-CGAAG-GCT-AACT
1 GAAGCACAC-AAGTGCTAAACG
74848659 GAAGCACACAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACG
74848680 GAAGC
1 GAAGC
74848685 CTAAAGGCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
18 8 0.22
19 7 0.19
20 8 0.22
21 13 0.36
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (21 bp):
GAAGCACACAAGTGCTAAACG
Found at i:74848661 original size:39 final size:39
Alignment explanation
Indices: 74848602--74848702 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
74848592 ATCGTGATCT
** * *
74848602 GAAGCCCGAAGTTTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
74848641 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
**
74848680 GAAGCCTAAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
74848703 TCATTGAGGT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.38, C:0.23, G:0.26, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:74851373 original size:15 final size:15
Alignment explanation
Indices: 74851350--74851391 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
74851340 GAGGCCCAGA
74851350 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
74851365 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
74851380 ATAAGGAAATCC
1 ATAAGGAAATCC
74851392 CATTTACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:74857611 original size:39 final size:39
Alignment explanation
Indices: 74857551--74857691 Score: 201
Period size: 39 Copynumber: 3.6 Consensus size: 39
74857541 ATCGTGATCT
* ** * *
74857551 GAAGCCCGAAGTCTAGTTGAAGCAAATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
74857590 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
74857629 GAAGCTCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
74857668 GAAGCCCCGAAGGCTAACTAAAGC
1 GAAG-CCCGAAGGCTAACTGAAGC
74857692 TCATCAAAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 74 0.81
40 17 0.19
ACGTcount: A:0.38, C:0.23, G:0.26, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:74857633 original size:21 final size:21
Alignment explanation
Indices: 74857569--74857672 Score: 78
Period size: 19 Copynumber: 5.2 Consensus size: 21
74857559 AAGTCTAGTT
* * *
74857569 GAAGCAAATAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAATG
*
74857590 GAAGC-C-CGAAG-GCTAACT-
1 GAAGCACAC-AAGTGCTAAATG
74857608 GAAGCACACAAGTGCTAAATG
1 GAAGCACACAAGTGCTAAATG
* * *
74857629 GAAGCTC-GAAG-GCTAACT-
1 GAAGCACACAAGTGCTAAATG
*
74857647 GAAGCACACAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAATG
74857668 GAAGC
1 GAAGC
74857673 CCCGAAGGCT
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
18 11 0.17
19 18 0.29
20 18 0.29
21 16 0.25
ACGTcount: A:0.40, C:0.21, G:0.26, T:0.12
Consensus pattern (21 bp):
GAAGCACACAAGTGCTAAATG
Found at i:74860402 original size:47 final size:46
Alignment explanation
Indices: 74860331--74860551 Score: 202
Period size: 47 Copynumber: 4.7 Consensus size: 46
74860321 GGTAAGGTAC
* *
74860331 CGATGACATGTCCCAAACATGGTCTTACACTGGCTCAT-ATCTCAAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-AGT
* * *
74860378 CGATGCGATGTCCCAGACACGGTCTTACACTAACT-ATCATCTCGTAGC
1 CGATGC-ATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC--AGT
* *
74860426 CGATGCATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTCAGT
1 CGATGCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAGT
* * * *
74860470 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTTCCATAATGT-GGT
1 --CGATG-CATGTCCCAGACATGGTCTTACACTAGC-T-CATCATCTCAGT
*
74860520 TGATGCATGTCCCAGACAT-GTCTTACACTAGC
1 CGATGCATGTCCCAGACATGGTCTTACACTAGC
74860552 ACACACAAGT
Statistics
Matches: 144, Mismatches: 19, Indels: 23
0.77 0.10 0.12
Matches are distributed among these distances:
44 2 0.01
46 38 0.26
47 74 0.51
48 24 0.17
50 3 0.02
51 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAGT
Found at i:74860498 original size:94 final size:94
Alignment explanation
Indices: 74860380--74860553 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 94
74860370 TCTCAAGTCG
* *
74860380 ATGCGATGTCCCAGACACGGTCTTACACTAACTAT-CAT-CTCGTAGCCGATGCATGTCCCAGAC
1 ATGCCATGTCCCAGACACGGTCTTACACTAACT-TCCATAAT-GTAGCCGATGCATGTCCCAGAC
74860443 ATGTCTTACACTAGCACTCGTCTCAGTGCCA
64 ATGTCTTACACTAGCACTCGTCTCAGTGCCA
* * * **
74860474 ATGCCATGTCCCAGACATGGTCTTACACTAGCTTCCATAATGTGGTTGATGCATGTCCCAGACAT
1 ATGCCATGTCCCAGACACGGTCTTACACTAACTTCCATAATGTAGCCGATGCATGTCCCAGACAT
74860539 GTCTTACACTAGCAC
66 GTCTTACACTAGCAC
74860554 ACACAAGTGA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
93 1 0.01
94 69 0.97
95 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (94 bp):
ATGCCATGTCCCAGACACGGTCTTACACTAACTTCCATAATGTAGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCACTCGTCTCAGTGCCA
Found at i:74866210 original size:27 final size:27
Alignment explanation
Indices: 74866162--74866320 Score: 177
Period size: 27 Copynumber: 5.9 Consensus size: 27
74866152 GCGAGGCTGC
* *
74866162 CAGATATTGTGACGA-AGTCACCAGATA
1 CAGATATTGTGGC-ATAGCCACCAGATA
74866189 CAGATATTGTGGCATAGCCACCAGA-A
1 CAGATATTGTGGCATAGCCACCAGATA
*
74866215 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCATAGCCACCAGATA
*
74866242 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCATAGCCACCAGATA
*
74866269 CAGATATATGTAGC-TGAGCCACCAGAT-
1 CAGATAT-TGTGGCAT-AGCCACCAGATA
74866296 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCATAGCCACCAG
74866321 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
26 12 0.11
27 97 0.85
28 5 0.04
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCATAGCCACCAGATA
Found at i:74866321 original size:54 final size:54
Alignment explanation
Indices: 74866180--74866323 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
74866170 GTGACGAAGT
* *
74866180 CACCAGATACAGAT-ATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTAGCAGAGC
*
74866234 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTAGCTGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTAGCAGAGC
74866288 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
74866324 GCTTCCTTCA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTAGCAGAGC
Found at i:74867093 original size:28 final size:28
Alignment explanation
Indices: 74867061--74867172 Score: 215
Period size: 28 Copynumber: 4.0 Consensus size: 28
74867051 CAAATCAAGT
74867061 GTTTACTGCTGCTGTCCCAAGCAGATTG
1 GTTTACTGCTGCTGTCCCAAGCAGATTG
74867089 GTTTACTGCTGCTGTCCCAAGCAGATTG
1 GTTTACTGCTGCTGTCCCAAGCAGATTG
74867117 GTTTACTGCTGCTGTCCCAAGCAGATTG
1 GTTTACTGCTGCTGTCCCAAGCAGATTG
74867145 GTTTACTGCTGCTGTCCCAAGCAAGATT
1 GTTTACTGCTGCTGTCCCAAGC-AGATT
74867173 TATTACCAAA
Statistics
Matches: 83, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
28 78 0.94
29 5 0.06
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.32
Consensus pattern (28 bp):
GTTTACTGCTGCTGTCCCAAGCAGATTG
Found at i:74870030 original size:22 final size:22
Alignment explanation
Indices: 74869967--74870047 Score: 92
Period size: 23 Copynumber: 3.6 Consensus size: 22
74869957 CTGATTCGTA
* *
74869967 AGAGCTTACTGTTTCAGCCCATT
1 AGAGCTTACTG-TTCAGCTCAAT
*
74869990 GGAGCTTACTGATTCAGCTCGAA-
1 AGAGCTTACTG-TTCAGCTC-AAT
*
74870013 AGAGCTCACTGTTCAGCTCAAT
1 AGAGCTTACTGTTCAGCTCAAT
74870035 AGAGCTTACTGTT
1 AGAGCTTACTGTT
74870048 TATCAGCTCA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
21 2 0.04
22 20 0.41
23 26 0.53
24 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (22 bp):
AGAGCTTACTGTTCAGCTCAAT
Found at i:74874751 original size:16 final size:15
Alignment explanation
Indices: 74874721--74874754 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
74874711 GGCAAGAGAT
74874721 AAGAAATTAGAAGGA
1 AAGAAATTAGAAGGA
*
74874736 AAGAAAGTTGGAAGGA
1 AAGAAA-TTAGAAGGA
74874752 AAG
1 AAG
74874755 TGAAAGATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.32, T:0.12
Consensus pattern (15 bp):
AAGAAATTAGAAGGA
Found at i:74875525 original size:7 final size:7
Alignment explanation
Indices: 74875513--74875548 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
74875503 GAGTTCAAAG
74875513 GATATAT
1 GATATAT
74875520 GATATAT
1 GATATAT
74875527 GATATAT
1 GATATAT
74875534 GATATAT
1 GATATAT
74875541 GATA-AT
1 GATATAT
74875547 GA
1 GA
74875549 AATGATTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 4 0.14
7 25 0.86
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.39
Consensus pattern (7 bp):
GATATAT
Found at i:74889196 original size:30 final size:30
Alignment explanation
Indices: 74889162--74889227 Score: 132
Period size: 30 Copynumber: 2.2 Consensus size: 30
74889152 ATAGAATAAG
74889162 AAATTAATGCTTAGTAAGTTCGTATAACAA
1 AAATTAATGCTTAGTAAGTTCGTATAACAA
74889192 AAATTAATGCTTAGTAAGTTCGTATAACAA
1 AAATTAATGCTTAGTAAGTTCGTATAACAA
74889222 AAATTA
1 AAATTA
74889228 TCTTACCATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.33
Consensus pattern (30 bp):
AAATTAATGCTTAGTAAGTTCGTATAACAA
Found at i:74900099 original size:25 final size:25
Alignment explanation
Indices: 74900064--74900167 Score: 95
Period size: 25 Copynumber: 4.2 Consensus size: 25
74900054 CACTCGTTCT
*
74900064 AGCCATATAACAGGAAGCTCATGTG
1 AGCCATGTAACAGGAAGCTCATGTG
* * *
74900089 AGCCATGTAACAGGAGGCTTATTTG
1 AGCCATGTAACAGGAAGCTCATGTG
* * * **
74900114 GGCCTTGTAACAGGAAGCTTATAAG
1 AGCCATGTAACAGGAAGCTCATGTG
*
74900139 AGCCA--TAATCAAGAAGCTCATGTG
1 AGCCATGTAA-CAGGAAGCTCATGTG
74900163 AGCCA
1 AGCCA
74900168 ATAACGGAAA
Statistics
Matches: 63, Mismatches: 15, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
23 3 0.05
24 16 0.25
25 44 0.70
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (25 bp):
AGCCATGTAACAGGAAGCTCATGTG
Found at i:74905263 original size:56 final size:58
Alignment explanation
Indices: 74905169--74905289 Score: 192
Period size: 56 Copynumber: 2.1 Consensus size: 58
74905159 ATAAAAATGG
74905169 TGAAAATAGAGAAATAAGAAATATTTGGAAATAAATGTGGTTTTCTCCAAAATGAAAA
1 TGAAAATAGAGAAATAAGAAATATTTGGAAATAAATGTGGTTTTCTCCAAAATGAAAA
* * * *
74905227 TGAAAATAGAGAAATGA-AAAT-TTTGGAAATGAATGTGGTTTTCTCCAAATTGAAAT
1 TGAAAATAGAGAAATAAGAAATATTTGGAAATAAATGTGGTTTTCTCCAAAATGAAAA
74905283 TGAAAAT
1 TGAAAAT
74905290 GACCTGAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
56 39 0.66
57 4 0.07
58 16 0.27
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.30
Consensus pattern (58 bp):
TGAAAATAGAGAAATAAGAAATATTTGGAAATAAATGTGGTTTTCTCCAAAATGAAAA
Found at i:74906854 original size:27 final size:27
Alignment explanation
Indices: 74906816--74906974 Score: 174
Period size: 27 Copynumber: 5.9 Consensus size: 27
74906806 GAATACTTTA
* * **
74906816 GTTTACAAAATTACCAAAGTACCATTG
1 GTTTATAAAATTACCAAAATACCCCTG
* * * *
74906843 GTTTGTAAAATTACTAAAATACCCTTT
1 GTTTATAAAATTACCAAAATACCCCTG
74906870 GTTTATAAAATTACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCCTG
* * *
74906897 GTTTGTAAAATTATCAAAATACCCCTA
1 GTTTATAAAATTACCAAAATACCCCTG
*
74906924 GTTTATAAAATTACCAAAATATCCCTG
1 GTTTATAAAATTACCAAAATACCCCTG
* * * *
74906951 ATTTGTGAAATTACTAAAATACCC
1 GTTTATAAAATTACCAAAATACCC
74906975 TCAACCTGTA
Statistics
Matches: 110, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.33
Consensus pattern (27 bp):
GTTTATAAAATTACCAAAATACCCCTG
Found at i:74906880 original size:54 final size:53
Alignment explanation
Indices: 74906811--74906975 Score: 215
Period size: 54 Copynumber: 3.0 Consensus size: 53
74906801 GTTTAGAATA
* * *
74906811 CTTTAGTTTACAAAATTACCAAAGTACCATTGGTTTGTAAAATTACTAAAATACC
1 CTTT-GTTTATAAAATTACCAAAATACC-CTGGTTTGTAAAATTACTAAAATACC
74906866 CTTTGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCAAAATACC
1 CTTTGTTTATAAAATTACCAAAATA-CCCTGGTTTGTAAAATTACT-AAAATACC
* * * *
74906920 CCTAGTTTATAAAATTACCAAAATATCCCTGATTTGTGAAATTACTAAAATACC
1 CTTTGTTTATAAAATTACCAAAATA-CCCTGGTTTGTAAAATTACTAAAATACC
74906974 CT
1 CT
74906976 CAACCTGTAA
Statistics
Matches: 98, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
53 1 0.01
54 90 0.92
55 7 0.07
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (53 bp):
CTTTGTTTATAAAATTACCAAAATACCCTGGTTTGTAAAATTACTAAAATACC
Done.