Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 225 of 284
Found at i:74906988 original size:27 final size:27
Alignment explanation
Indices: 74906958--74907028 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
74906948 CTGATTTGTG
74906958 AAATTACTAAAATACCCTCAACCTGTA
1 AAATTACTAAAATACCCTCAACCTGTA
* * * *
74906985 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCAACCTGTA
* *
74907012 AAATTACCAAAGTACCC
1 AAATTACTAAAATACCC
74907029 CTGATTTACA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCAACCTGTA
Found at i:74907414 original size:27 final size:27
Alignment explanation
Indices: 74907067--74907423 Score: 428
Period size: 27 Copynumber: 13.3 Consensus size: 27
74907057 CAATTTACAA
*
74907067 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
74907094 AAATACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
74907121 AAATACCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
74907148 AAATATCGAAATATCCCTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
74907175 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74907202 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
74907229 AAATATCGAAATACCCCTGTAGCGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * **
74907256 AAATACCAAAATACCCCTACAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74907283 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74907310 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
74907337 AA-TACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74907363 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
74907390 AATTACCGAGATATCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
74907417 AATTACC
1 AATTACC
74907424 ATTTTACCCC
Statistics
Matches: 283, Mismatches: 46, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 24 0.08
27 259 0.92
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:74907826 original size:6 final size:6
Alignment explanation
Indices: 74907815--74908007 Score: 128
Period size: 6 Copynumber: 31.3 Consensus size: 6
74907805 TTGCTTTCAC
* *
74907815 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTGCCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * *
74907865 ATTCTG ATTCTG GTTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * *
74907914 ATTCTG -TTACCTA ATTCCG ATTCTG ATTTTG ATTTTG ATTTTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
74907964 ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
74908008 AATGTTTCTT
Statistics
Matches: 148, Mismatches: 22, Indels: 34
0.73 0.11 0.17
Matches are distributed among these distances:
5 10 0.07
6 118 0.80
7 13 0.09
8 7 0.05
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:74907846 original size:19 final size:18
Alignment explanation
Indices: 74907843--74907913 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 18
74907833 TTACCTGATA
74907843 CTGATTCTGATTCTGTTGC
1 CTGATTCTGATTCTGTT-C
*
74907862 CTAATTCTGATTCTGGTT-
1 CTGATTCTGATTCT-GTTC
*
74907880 CTGATTCTAATTCTGTTAC
1 CTGATTCTGATTCTGTT-C
*
74907899 CTGATACTGATTCTG
1 CTGATTCTGATTCTG
74907914 ATTCTGTTAC
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 3 0.07
18 12 0.27
19 26 0.59
20 3 0.07
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (18 bp):
CTGATTCTGATTCTGTTC
Found at i:74907846 original size:25 final size:25
Alignment explanation
Indices: 74907818--74907882 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
74907808 CTTTCACATT
*
74907818 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
* *
74907843 CTGATTCTGATTCTGTTGCCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
74907868 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
74907883 ATTCTAATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:74907884 original size:37 final size:37
Alignment explanation
Indices: 74907837--74907919 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
74907827 ATTCTGTTAC
* * * *
74907837 CTGATACTGATTCTGATTCTGTTGCCTAATTCTGATT
1 CTGATTCTGATTCTAATTCTGTTACCTAATACTGATT
* *
74907874 CTGGTTCTGATTCTAATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTAATTCTGTTACCTAATACTGATT
74907911 CTGATTCTG
1 CTGATTCTG
74907920 TTACCTAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTAATTCTGTTACCTAATACTGATT
Found at i:74907913 original size:62 final size:61
Alignment explanation
Indices: 74907816--74908007 Score: 251
Period size: 62 Copynumber: 3.1 Consensus size: 61
74907806 TGCTTTCACA
74907816 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTGCCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTT-CCTAATTCTGATTCTGG
* * *
74907878 TTCTGATTCTAATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCCGATTCTGA
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTT-CCTAATTCTGATTCTGG
* * * * * * * *
74907940 TTTTGATTTTGATTTTGTCACCTGATTCTGATTCTGATTCTGATT-CTCATTTTGATTCTAG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG-TTCCTAATTCTGATTCTGG
74908001 TTCTGAT
1 TTCTGAT
74908008 AATGTTTCTT
Statistics
Matches: 113, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
61 17 0.15
62 94 0.83
63 2 0.02
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (61 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTCCTAATTCTGATTCTGG
Found at i:74907917 original size:25 final size:25
Alignment explanation
Indices: 74907880--74907941 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
74907870 GATTCTGGTT
* *
74907880 CTGATTCTAATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
74907905 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
74907930 CCGATTCTGATT
1 CTGATTCTGATT
74907942 TTGATTTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:74907930 original size:19 final size:19
Alignment explanation
Indices: 74907846--74907938 Score: 73
Period size: 19 Copynumber: 4.6 Consensus size: 19
74907836 CCTGATACTG
*
74907846 ATTCTGATTCTGTTGCCTA
1 ATTCTGATTCTGTTACCTA
*
74907865 ATTCTGATTCTGGTT--CTG
1 ATTCTGATTCT-GTTACCTA
*
74907883 ATTCTAATTCTGTTACCTGATA
1 ATTCTGATTCTGTTACC---TA
74907905 CTGATTCTGATTCTGTTACCTA
1 ---ATTCTGATTCTGTTACCTA
*
74907927 ATTCCGATTCTG
1 ATTCTGATTCTG
74907939 ATTTTGATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
17 3 0.05
18 12 0.20
19 23 0.38
20 3 0.05
22 3 0.05
25 16 0.27
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (19 bp):
ATTCTGATTCTGTTACCTA
Found at i:74907992 original size:37 final size:37
Alignment explanation
Indices: 74907899--74907993 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 37
74907889 ATTCTGTTAC
* * *
74907899 CTGATACTGATTCTGATTCTGTTACCTAATTCCGATT
1 CTGATTCTGATTCTGATTTTGTCACCTAATTCCGATT
* * * *
74907936 CTGATTTTGATTTTGATTTTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTTTGTCACCTAATTCCGATT
*
74907973 CTGATTCTGATTCTCATTTTG
1 CTGATTCTGATTCTGATTTTG
74907994 ATTCTAGTTC
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTTTGTCACCTAATTCCGATT
Found at i:74912390 original size:27 final size:26
Alignment explanation
Indices: 74912338--74912397 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
74912328 CCACATATAT
*
74912338 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
74912364 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
74912391 ATATCTG
1 ATATCTG
74912398 GCAACCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:74912526 original size:6 final size:6
Alignment explanation
Indices: 74912515--74912634 Score: 104
Period size: 6 Copynumber: 19.5 Consensus size: 6
74912505 TTTGCTTTCA
* *
74912515 GATTCT GATTCT GATTCT G-TTACCT GATACT GATTCT GATTTT GATTCT
1 GATTCT GATTCT GATTCT GATT--CT GATTCT GATTCT GATTCT GATTCT
* *
74912564 G-TTACCT GATACT GATTCT GATTCT GATTCT G-TCACCT GATTCT GATTCT
1 GATT--CT GATTCT GATTCT GATTCT GATTCT GAT--TCT GATTCT GATTCT
*
74912614 GATTTT GATTCT -AGTTCT GAT
1 GATTCT GATTCT GA-TTCT GAT
74912635 AATGTTTCTT
Statistics
Matches: 93, Mismatches: 10, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
5 6 0.06
6 74 0.80
7 10 0.11
8 3 0.03
ACGTcount: A:0.18, C:0.17, G:0.17, T:0.47
Consensus pattern (6 bp):
GATTCT
Found at i:74912547 original size:19 final size:19
Alignment explanation
Indices: 74912519--74912583 Score: 63
Period size: 19 Copynumber: 3.8 Consensus size: 19
74912509 CTTTCAGATT
*
74912519 CTGATTCTGATTCTGTTAC
1 CTGATACTGATTCTGTTAC
74912538 CTGATACTGATTCTG--A-
1 CTGATACTGATTCTGTTAC
*
74912554 -T--T-TTGATTCTGTTAC
1 CTGATACTGATTCTGTTAC
74912569 CTGATACTGATTCTG
1 CTGATACTGATTCTG
74912584 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 14
0.68 0.06 0.26
Matches are distributed among these distances:
12 8 0.22
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 22 0.61
ACGTcount: A:0.18, C:0.18, G:0.17, T:0.46
Consensus pattern (19 bp):
CTGATACTGATTCTGTTAC
Found at i:74912547 original size:25 final size:25
Alignment explanation
Indices: 74912519--74912614 Score: 90
Period size: 25 Copynumber: 3.6 Consensus size: 25
74912509 CTTTCAGATT
74912519 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
74912544 CTGATTCTGATTTTGATTCTGTTACCTGATA
1 CTGATTC------TGATTCTGTTACCTGATA
74912575 CTGATTCTGATTCTGATT--CTG-TCA
1 CTGATTCTGATTCTG-TTACCTGAT-A
74912599 CCTGATTCTGATTCTG
1 -CTGATTCTGATTCTG
74912615 ATTTTGATTC
Statistics
Matches: 62, Mismatches: 0, Indels: 18
0.77 0.00 0.22
Matches are distributed among these distances:
23 1 0.02
24 4 0.06
25 30 0.48
26 2 0.03
31 25 0.40
ACGTcount: A:0.18, C:0.20, G:0.17, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:74912550 original size:31 final size:31
Alignment explanation
Indices: 74912515--74912650 Score: 186
Period size: 31 Copynumber: 4.4 Consensus size: 31
74912505 TTTGCTTTCA
74912515 GATTCTGATTCTGATTCTGTTACCTGATACT
1 GATTCTGATTCTGATTCTGTTACCTGATACT
*
74912546 GATTCTGATTTTGATTCTGTTACCTGATACT
1 GATTCTGATTCTGATTCTGTTACCTGATACT
* *
74912577 GATTCTGATTCTGATTCTGTCACCTGATTCT
1 GATTCTGATTCTGATTCTGTTACCTGATACT
* *
74912608 GATTCTGATTTTGATTCTAGTT--CTGATAAT
1 GATTCTGATTCTGATTCT-GTTACCTGATACT
* *
74912638 GTTTCTTATTCTG
1 GATTCTGATTCTG
74912651 TAATGGGCTA
Statistics
Matches: 93, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
30 16 0.17
31 75 0.81
32 2 0.02
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (31 bp):
GATTCTGATTCTGATTCTGTTACCTGATACT
Found at i:74914176 original size:35 final size:35
Alignment explanation
Indices: 74914087--74914177 Score: 110
Period size: 35 Copynumber: 2.6 Consensus size: 35
74914077 CTACTGGTCC
*
74914087 TTCAAGGCAACACCATGTAAATGATATATAAGTCT
1 TTCAAGGCAACACCATGTAAATGATATATAAGTCA
* ** * * *
74914122 TTCAATGTGACATCGTGTAAATGGTATATAAGTCA
1 TTCAAGGCAACACCATGTAAATGATATATAAGTCA
*
74914157 TTCAGGGCAACACCATGTAAA
1 TTCAAGGCAACACCATGTAAA
74914178 CAAGATACAG
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (35 bp):
TTCAAGGCAACACCATGTAAATGATATATAAGTCA
Found at i:74921448 original size:3 final size:3
Alignment explanation
Indices: 74921440--74921483 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
74921430 TCAGTTAGAT
74921440 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
74921484 TTGTACCAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:74929027 original size:19 final size:20
Alignment explanation
Indices: 74929003--74929049 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
74928993 TGGTCGACTT
* *
74929003 TAATGCATATG-ATGTAATG
1 TAATGCAAATGAATGAAATG
74929022 TAATGCAAATGAATGAAATG
1 TAATGCAAATGAATGAAATG
74929042 -AATGCAAA
1 TAATGCAAA
74929050 ATGCGTTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGAATGAAATG
Found at i:74931000 original size:93 final size:93
Alignment explanation
Indices: 74930888--74931058 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
74930878 GCCCATAAGT
* *
74930888 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74930953 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
74930981 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
74931046 CGAGTTCGGATGC
66 CGAGCTCGGATGC
74931059 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:74931055 original size:46 final size:46
Alignment explanation
Indices: 74930880--74931055 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
74930870 TGTAACCCGC
* *
74930880 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
74930926 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
74930972 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
74931019 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
74931056 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:74933491 original size:30 final size:30
Alignment explanation
Indices: 74933447--74933535 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
74933437 CAAAGATAAC
*
74933447 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
74933476 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
74933506 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
74933536 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:74933495 original size:15 final size:14
Alignment explanation
Indices: 74933447--74933529 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
74933437 CAAAGATAAC
*
74933447 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
74933461 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
74933476 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
74933491 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
74933506 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
74933521 AAGAAACCC
1 AAGAAACCC
74933530 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:74933535 original size:15 final size:15
Alignment explanation
Indices: 74933458--74933535 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
74933448 AGAAAACCGA
74933458 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
74933473 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
74933487 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
74933502 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
74933518 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
74933533 ATA
1 ATA
74933536 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:74936565 original size:93 final size:93
Alignment explanation
Indices: 74936458--74936629 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74936448 GCCCATAAGT
* *
74936458 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74936523 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
74936551 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
74936616 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
74936630 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:74936625 original size:46 final size:46
Alignment explanation
Indices: 74936450--74936625 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
74936440 TGTAACCCGC
* *
74936450 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74936496 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
74936542 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
74936589 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74936626 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74949289 original size:33 final size:33
Alignment explanation
Indices: 74949234--74949310 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
74949224 TGACCCTGCC
* * * *
74949234 ATGGTCTTACATTCGTAGTGCCATAACTCAGTT
1 ATGGTCTTACAATCGGAGTGCCATAACCCAGCT
*
74949267 ATGGTCTTACAATCGG-GATGCCATAGCCCAGCT
1 ATGGTCTTACAATCGGAG-TGCCATAACCCAGCT
*
74949300 ATAGTCTTACA
1 ATGGTCTTACA
74949311 CATAAATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
32 1 0.03
33 36 0.97
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (33 bp):
ATGGTCTTACAATCGGAGTGCCATAACCCAGCT
Found at i:74955567 original size:115 final size:113
Alignment explanation
Indices: 74955432--74955680 Score: 241
Period size: 115 Copynumber: 2.2 Consensus size: 113
74955422 TCAGCAGTGT
* ** * * * * * * *
74955432 CGCTTGACAAACCAGTGACACCCACTAAAATTTTTTCCTTGATAGCCACTAGTGTCGCTTGACT-
1 CGCTTGACAGACCAACGACACCCACTAAAATTTTTTCCCTGATAGCCACCAATGCCACCT-AATA
* * *
74955496 GCGTGGTGGTACCAATTAAAATAATATATATTTTT-AAAAAATTAAAGGTGC
65 GCGTGGTGGCACAAATTAAAA-AA-ATAT-TTTTTAAAAAAATTAAAGGTAC
* * ** ** *
74955547 CGCTTGACAGACCGACGACACTCTTTAATTTTTTTTCCCTGATAGTCACCAATGCCACCTAATAG
1 CGCTTGACAGACCAACGACACCCACTAAAATTTTTTCCCTGATAGCCACCAATGCCACCTAATAG
*
74955612 CGTGGTGGCACAAATTAAAAAAATATTTTTTAAAAAAAATTAGAGGTAC
66 CGTGGTGGCACAAATTAAAAAAATATTTTTT-AAAAAAATTAAAGGTAC
*
74955661 CGCTTGACAGCCCAACGACA
1 CGCTTGACAGACCAACGACA
74955681 GACATTAAAT
Statistics
Matches: 108, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
112 5 0.05
113 4 0.04
114 36 0.33
115 63 0.58
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (113 bp):
CGCTTGACAGACCAACGACACCCACTAAAATTTTTTCCCTGATAGCCACCAATGCCACCTAATAG
CGTGGTGGCACAAATTAAAAAAATATTTTTTAAAAAAATTAAAGGTAC
Found at i:74956726 original size:5 final size:5
Alignment explanation
Indices: 74956716--74956762 Score: 80
Period size: 5 Copynumber: 9.8 Consensus size: 5
74956706 TCTAAGTTTA
74956716 AAATC AAATC AAATC AAATC AAAT- AAATC AAATC AAATC AAAT- AAAT
1 AAATC AAATC AAATC AAATC AAATC AAATC AAATC AAATC AAATC AAAT
74956763 ACGCACAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
4 8 0.20
5 33 0.80
ACGTcount: A:0.64, C:0.15, G:0.00, T:0.21
Consensus pattern (5 bp):
AAATC
Found at i:74956772 original size:19 final size:19
Alignment explanation
Indices: 74956716--74956762 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 19
74956706 TCTAAGTTTA
74956716 AAATCAAATCAAATCAAATC
1 AAAT-AAATCAAATCAAATC
74956736 AAATAAATCAAATCAAATC
1 AAATAAATCAAATCAAATC
74956755 AAATAAAT
1 AAATAAAT
74956763 ACGCACAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.64, C:0.15, G:0.00, T:0.21
Consensus pattern (19 bp):
AAATAAATCAAATCAAATC
Found at i:74958107 original size:26 final size:26
Alignment explanation
Indices: 74958078--74958185 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
74958068 TGATACAAAT
74958078 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74958104 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74958130 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74958156 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74958182 TGAT
1 TGAT
74958186 GGGCATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74959649 original size:27 final size:26
Alignment explanation
Indices: 74959604--74959677 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
74959594 AGTTTCCCCA
74959604 TGGCTCTGCCACGAT-TATCTGATCTGG
1 TGGCTCTG-CAC-ATATATCTGATCTGG
*
74959631 TGGCTCTGTCACATATATCTGTTCTGG
1 TGGCTCTG-CACATATATCTGATCTGG
74959658 TGGCTCTGCTACA-ATATCTG
1 TGGCTCTGC-ACATATATCTG
74959678 TATAATTTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
26 10 0.23
27 33 0.77
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
TGGCTCTGCACATATATCTGATCTGG
Found at i:74960698 original size:35 final size:34
Alignment explanation
Indices: 74960628--74960698 Score: 88
Period size: 35 Copynumber: 2.1 Consensus size: 34
74960618 CTAGAAACTT
* *
74960628 TTTTGAAATTTTTATAATCTTTTAAAAATATAAA
1 TTTTGAAATTTTTATAATATTTTAAAAATAAAAA
* **
74960662 TTTTGGAATTTTTATAAATATTTTAAATTTAAAAA
1 TTTTGAAATTTTTAT-AATATTTTAAAAATAAAAA
74960697 TT
1 TT
74960699 AATTTGAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
34 14 0.45
35 17 0.55
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.52
Consensus pattern (34 bp):
TTTTGAAATTTTTATAATATTTTAAAAATAAAAA
Found at i:74960703 original size:19 final size:20
Alignment explanation
Indices: 74960688--74960730 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
74960678 AATATTTTAA
74960688 ATTTAAAAATTAATTTGAAT
1 ATTTAAAAATTAATTTGAAT
* *
74960708 TTTTGAAAATTAATTTGATAT
1 ATTTAAAAATTAATTTGA-AT
74960729 AT
1 AT
74960731 ATTGTTTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (20 bp):
ATTTAAAAATTAATTTGAAT
Found at i:74961971 original size:52 final size:52
Alignment explanation
Indices: 74961893--74961998 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
74961883 GGTGTTAATT
74961893 TAATTGATATGCGTATTGTTGTTAATATAGAAGGATATAGTTTTAAGTATTG
1 TAATTGATATGCGTATTGTTGTTAATATAGAAGGATATAGTTTTAAGTATTG
74961945 TAATTGATATGCGTATTGTTGTTAATATAGAAGGATATAGTTTTAAGTATTG
1 TAATTGATATGCGTATTGTTGTTAATATAGAAGGATATAGTTTTAAGTATTG
74961997 TA
1 TA
74961999 TCAGAAATAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (52 bp):
TAATTGATATGCGTATTGTTGTTAATATAGAAGGATATAGTTTTAAGTATTG
Found at i:74962379 original size:22 final size:21
Alignment explanation
Indices: 74962354--74962398 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
74962344 GATCCACCTG
74962354 TTAAAAAGTATAACAATTATTT
1 TTAAAAAGTATAA-AATTATTT
* * *
74962376 TTAATAATTTTAAAATTATTT
1 TTAAAAAGTATAAAATTATTT
74962397 TT
1 TT
74962399 GTTGATGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
TTAAAAAGTATAAAATTATTT
Found at i:74975038 original size:41 final size:40
Alignment explanation
Indices: 74974981--74975064 Score: 150
Period size: 41 Copynumber: 2.1 Consensus size: 40
74974971 ATACACACAC
*
74974981 AAATTCAAAAACTTTTGAGCCATTTTCATGTGAGATGGAG
1 AAATTCAAAAACTTTTGAGCCAATTTCATGTGAGATGGAG
74975021 AAATTCAAAAAACTTTTGAGCCAATTTCATGTGAGATGGAG
1 AAATTC-AAAAACTTTTGAGCCAATTTCATGTGAGATGGAG
74975062 AAA
1 AAA
74975065 AGGTGAGTGT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 6 0.14
41 36 0.86
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (40 bp):
AAATTCAAAAACTTTTGAGCCAATTTCATGTGAGATGGAG
Found at i:74975247 original size:7 final size:7
Alignment explanation
Indices: 74975231--74975260 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
74975221 AATTGTCTTC
*
74975231 TTCTTCT
1 TTCTTTT
74975238 TTCTTTT
1 TTCTTTT
74975245 TTCTTTT
1 TTCTTTT
74975252 TTCTTTT
1 TTCTTTT
74975259 TT
1 TT
74975261 ATTTAATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
TTCTTTT
Found at i:74976158 original size:18 final size:18
Alignment explanation
Indices: 74976135--74976182 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
74976125 AAAACTAATT
*
74976135 TTTTATTTATATCTTCTA
1 TTTTATTTATATCTTATA
*
74976153 TTTTATTT-TAATTTTATA
1 TTTTATTTAT-ATCTTATA
74976171 TATTTATTTATA
1 T-TTTATTTATA
74976183 ATTAAATCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 1 0.04
18 15 0.60
19 8 0.32
20 1 0.04
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTATTTATATCTTATA
Found at i:74981060 original size:35 final size:34
Alignment explanation
Indices: 74981012--74981096 Score: 100
Period size: 35 Copynumber: 2.5 Consensus size: 34
74981002 TTATTCGTCG
** *
74981012 ATTTATCCAACTAGTTTTGGGCACA-ACTTCTGTCA
1 ATTTATCTGACTAGTGTTGGGCACACA-TT-TGTCA
*
74981047 ATTTATCTGACTAGTGTTGGGCACACATTTGTCG
1 ATTTATCTGACTAGTGTTGGGCACACATTTGTCA
*
74981081 GTTTATCTGACTAGTG
1 ATTTATCTGACTAGTG
74981097 CTAGGTATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
34 19 0.43
35 24 0.55
36 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (34 bp):
ATTTATCTGACTAGTGTTGGGCACACATTTGTCA
Found at i:74981091 original size:34 final size:34
Alignment explanation
Indices: 74981021--74981190 Score: 130
Period size: 34 Copynumber: 4.9 Consensus size: 34
74981011 GATTTATCCA
* **
74981021 ACTAGTTTTGGGCACA-ACTTCTGTCAATTTATCTG
1 ACTAGTGTTGGGCACACA-TT-TGTCGGTTTATCTG
74981056 ACTAGTGTTGGGCACACATTTGTCGGTTTATCTG
1 ACTAGTGTTGGGCACACATTTGTCGGTTTATCTG
* * * * *
74981090 ACTAGTGCTAGGTATATATTTGTCGGTTTATCTG
1 ACTAGTGTTGGGCACACATTTGTCGGTTTATCTG
* * * * *
74981124 GCTAGAGTTAGGTGCA-AC-TTCCGTCAGTTTATCTA
1 ACTAGTGTT-GG-GCACACATT-TGTCGGTTTATCTG
* * *
74981159 ACTAGTGCTAGGAACACATTTGTCGGTTTATC
1 ACTAGTGTTGGGCACACATTTGTCGGTTTATC
74981191 CGACAAACAT
Statistics
Matches: 105, Mismatches: 24, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
33 2 0.02
34 62 0.59
35 38 0.36
36 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (34 bp):
ACTAGTGTTGGGCACACATTTGTCGGTTTATCTG
Found at i:74981204 original size:69 final size:69
Alignment explanation
Indices: 74981081--74981209 Score: 161
Period size: 69 Copynumber: 1.9 Consensus size: 69
74981071 ACATTTGTCG
* * * * * * * * *
74981081 GTTTATCTGACTAGTGCTAGGTATATATTTGTCGGTTTATCTGGCTAGAGTTAGGTGCAACTTCC
1 GTTTATCTAACTAGTGCTAGGAACACATTTGTCGGTTTATCCGACTAAAATTAGGCGCAACTTCC
74981146 GTCA
66 GTCA
74981150 GTTTATCTAACTAGTGCTAGGAACACATTTGTCGGTTTATCCGAC-AAACATTAGGCGCAA
1 GTTTATCTAACTAGTGCTAGGAACACATTTGTCGGTTTATCCGACTAAA-ATTAGGCGCAA
74981210 ACTCTTCTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
68 2 0.04
69 48 0.96
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (69 bp):
GTTTATCTAACTAGTGCTAGGAACACATTTGTCGGTTTATCCGACTAAAATTAGGCGCAACTTCC
GTCA
Found at i:74986986 original size:25 final size:23
Alignment explanation
Indices: 74986943--74986989 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
74986933 AAAGTAGGTT
*
74986943 TATATATTATTTTTATAATATTA
1 TATATATGATTTTTATAATATTA
74986966 TATATTATGATTTTTATTAATATT
1 TATA-TATGATTTTTA-TAATATT
74986990 TTATTAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.19
24 10 0.48
25 7 0.33
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (23 bp):
TATATATGATTTTTATAATATTA
Found at i:74991890 original size:23 final size:23
Alignment explanation
Indices: 74991849--74991910 Score: 106
Period size: 23 Copynumber: 2.7 Consensus size: 23
74991839 GTTCAAACGG
*
74991849 TTAATTAAATTAAATTAGTATTAA
1 TTAATT-AATTAAACTAGTATTAA
74991873 TTAATTAATTAAACTAGTATTAA
1 TTAATTAATTAAACTAGTATTAA
74991896 TTAATTAATTAAACT
1 TTAATTAATTAAACT
74991911 TTTTAATTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
23 31 0.84
24 6 0.16
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (23 bp):
TTAATTAATTAAACTAGTATTAA
Found at i:74997298 original size:24 final size:24
Alignment explanation
Indices: 74997271--74997322 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
74997261 AATCAATGTC
* *
74997271 AAATATATTGTGCTAATAAATACT
1 AAATATATTCTACTAATAAATACT
74997295 AAATATATTCTACTAATAAATACT
1 AAATATATTCTACTAATAAATACT
74997319 AAAT
1 AAAT
74997323 CTTTTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTCTACTAATAAATACT
Found at i:74997462 original size:29 final size:29
Alignment explanation
Indices: 74997413--74997471 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
74997403 TTCACATTGA
* * *
74997413 CACGAATTCTCAATGATCAAGTTTTTCAC
1 CACGAACTCTCAACGAACAAGTTTTTCAC
74997442 CACGAACTCTCAACGAACAAGTTTTTCAC
1 CACGAACTCTCAACGAACAAGTTTTTCAC
74997471 C
1 C
74997472 TCTTCCATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.29
Consensus pattern (29 bp):
CACGAACTCTCAACGAACAAGTTTTTCAC
Found at i:75001526 original size:301 final size:301
Alignment explanation
Indices: 75000978--75001531 Score: 939
Period size: 301 Copynumber: 1.8 Consensus size: 301
75000968 ATCCATAAGT
* *
75000978 GAACTCGGACTCAACTCAACAAGTTTGGATGCCCAAATATCCGAATCTATTCCTAAGGTTCAACG
1 GAACTCGGACTCAACTCAACAAGTTCGGACGCCCAAATATCCGAATCTATTCCTAAGGTTCAACG
* *
75001043 GGACTTTCCTCGTTCGTACTCCTCTACCATTCTCCTTGGAATACCCATGACGATACTTCGATAGT
66 GGACTTTCCTCGTTCGTACTCATCTACCATTCTCCTTGGAATACCAATGACGATACTTCGATAGT
* *
75001108 CTTTCACATTTTTCACATAATTTATAAAATTTTTGCATGTTGTCCAACAATGACCACAAAGCATA
131 CTTTCACATTTTTCACATAATTCATAAAATTTTTGCATATTGTCCAACAATGACCACAAAGCATA
*
75001173 GAATTGCATGATAACAATCATAATATCGTATAAATAGCATTAAATGATTTAAAATAACTGAACTC
196 GAATTGCATGATAACAATCATAATATCGTATAAATAGCATTAAATAATTTAAAATAACTGAACTC
75001238 GGACTCAACTTAACAAGTTCGGATTCCCAGTTACATTTCAC
261 GGACTCAACTTAACAAGTTCGGATTCCCAGTTACATTTCAC
* *
75001279 GAACTCGGACTCAACTTAACGAGTTCGGACGCCCAAATAT-CGTAATCTATTCCTAAGGTTCAAC
1 GAACTCGGACTCAACTCAACAAGTTCGGACGCCCAAATATCCG-AATCTATTCCTAAGGTTCAAC
* * * * * *
75001343 GGGATTTTTCTCGTTCGTACTCATTTACCATTCTCCTTGGAATACTAATGATGATACTTCGGTAG
65 GGGACTTTCCTCGTTCGTACTCATCTACCATTCTCCTTGGAATACCAATGACGATACTTCGATAG
75001408 TCTTTCACATTTTTCACATAATTCATAAAATTTTTGCATATTGTCCAACAATGACCACAAAGCAT
130 TCTTTCACATTTTTCACATAATTCATAAAATTTTTGCATATTGTCCAACAATGACCACAAAGCAT
* *
75001473 AGAATTGCATGATAACAATCATAGTATCGTATAAATAGTATTAAATAATTTAAAATAAC
195 AGAATTGCATGATAACAATCATAATATCGTATAAATAGCATTAAATAATTTAAAATAAC
75001532 GGTTATATTA
Statistics
Matches: 235, Mismatches: 17, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
300 2 0.01
301 233 0.99
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.32
Consensus pattern (301 bp):
GAACTCGGACTCAACTCAACAAGTTCGGACGCCCAAATATCCGAATCTATTCCTAAGGTTCAACG
GGACTTTCCTCGTTCGTACTCATCTACCATTCTCCTTGGAATACCAATGACGATACTTCGATAGT
CTTTCACATTTTTCACATAATTCATAAAATTTTTGCATATTGTCCAACAATGACCACAAAGCATA
GAATTGCATGATAACAATCATAATATCGTATAAATAGCATTAAATAATTTAAAATAACTGAACTC
GGACTCAACTTAACAAGTTCGGATTCCCAGTTACATTTCAC
Found at i:75007178 original size:22 final size:22
Alignment explanation
Indices: 75007150--75007268 Score: 87
Period size: 22 Copynumber: 5.3 Consensus size: 22
75007140 GGACTCACCA
75007150 CAGCTCGTATGAGCTTACTGTT
1 CAGCTCGTATGAGCTTACTGTT
* *
75007172 CAGCTCGAAAGAGCTTACTGTTTT
1 CAGCTCGTATGAGCTTACTG--TT
* * **
75007196 TAGCTCAT-TGGAGCTTACCATT
1 CAGCTCGTAT-GAGCTTACTGTT
*
75007218 CAGCTCGTATGACCTTACTGTT
1 CAGCTCGTATGAGCTTACTGTT
* ** * *
75007240 CAACTCAAAAGAGCTTACCGTTT
1 CAGCTCGTATGAGCTTACTG-TT
75007263 CAGCTC
1 CAGCTC
75007269 AATAGAGCTT
Statistics
Matches: 72, Mismatches: 20, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
22 49 0.68
23 8 0.11
24 15 0.21
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (22 bp):
CAGCTCGTATGAGCTTACTGTT
Found at i:75014989 original size:23 final size:23
Alignment explanation
Indices: 75014917--75014997 Score: 92
Period size: 23 Copynumber: 3.5 Consensus size: 23
75014907 CAGCTCGTAT
*
75014917 GAGCTTACTG-TTCAGCTCAAAA
1 GAGCTTACTGTTTCAGCTCAATA
* * * *
75014939 GAGCTTATTGTTTTCAGTTCATTG
1 GAGCTTACTG-TTTCAGCTCAATA
*
75014963 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACTGTTTCAGCTCAATA
75014986 GAGCTTACTGTT
1 GAGCTTACTGTT
75014998 CATCAGCTTT
Statistics
Matches: 46, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
22 9 0.20
23 21 0.46
24 16 0.35
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATA
Found at i:75015010 original size:46 final size:45
Alignment explanation
Indices: 75014917--75015011 Score: 111
Period size: 47 Copynumber: 2.1 Consensus size: 45
75014907 CAGCTCGTAT
* * *
75014917 GAGCTTACTGTTCAGCTCAAAAGAGCTTATTGTTTTCAGTTCATTG
1 GAGCTTACCGTTCAGCTCAAAAGAGCTTACTGTTATCAG-TCATTG
* *
75014963 GAGCTTACCGTTTCAGCTCAATAGAGCTTACTGTTCATCAG-CTTTG
1 GAGCTTACCG-TTCAGCTCAAAAGAGCTTACTGTT-ATCAGTCATTG
75015009 GAG
1 GAG
75015012 GAGCTTACCG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
46 16 0.38
47 22 0.52
48 4 0.10
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (45 bp):
GAGCTTACCGTTCAGCTCAAAAGAGCTTACTGTTATCAGTCATTG
Found at i:75019236 original size:45 final size:45
Alignment explanation
Indices: 75019179--75019267 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
75019169 CGTCATGTTG
* * *
75019179 CCATAATGTCTTTCAACTATAGCCTTACTCGTTAGAATCGTGATT
1 CCATAACGTCTTTCAACCATAGCCTTACTCGATAGAATCGTGATT
* * *
75019224 CCATAACGTCTTTCAGCCATGGTCTTACTCGATAGAATCGTGAT
1 CCATAACGTCTTTCAACCATAGCCTTACTCGATAGAATCGTGAT
75019268 GTCATAATGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.35
Consensus pattern (45 bp):
CCATAACGTCTTTCAACCATAGCCTTACTCGATAGAATCGTGATT
Found at i:75019274 original size:45 final size:44
Alignment explanation
Indices: 75019202--75019292 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 44
75019192 CAACTATAGC
* *
75019202 CTTACTCGTTAGAATCGTGATTCCATAACGTCTTTCAGCCATGGT
1 CTTACTCGATAGAATCGTGATTCCATAACG-CCTTCAGCCATGGT
* *
75019247 CTTACTCGATAGAATCGTGATGT-CATAATGCCTTCAGCTATGGT
1 CTTACTCGATAGAATCGTGAT-TCCATAACGCCTTCAGCCATGGT
75019291 CT
1 CT
75019293 CACTTGTTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
44 14 0.34
45 26 0.63
46 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (44 bp):
CTTACTCGATAGAATCGTGATTCCATAACGCCTTCAGCCATGGT
Found at i:75020192 original size:16 final size:16
Alignment explanation
Indices: 75020154--75020186 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
75020144 CCATTTTGCC
*
75020154 ATTAAA-ATAACATAT
1 ATTAAATATAAAATAT
75020169 ATTAAATATAAAATAT
1 ATTAAATATAAAATAT
75020185 AT
1 AT
75020187 GTAATAACCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
ATTAAATATAAAATAT
Found at i:75020895 original size:95 final size:95
Alignment explanation
Indices: 75020722--75020900 Score: 216
Period size: 95 Copynumber: 1.9 Consensus size: 95
75020712 ATGAATCAAG
* * * *
75020722 CATTAACCATTACACGATGTTGCTCACATGAGCTGTGAAGAACCTGTAATACATGCAGAACCTTA
1 CATTAACCATTACACGATGCTACTCACATGAGCTATGAAGAACCTGCAATACATGCAGAACCTTA
**
75020787 ACCATCGGCAAGGTATCCAATAAGTCGAGA
66 ACCATCAACAAGGTATCCAATAAGTCGAGA
* * * * * *
75020817 CATTAACCGTTACACGATGCTACTCACATG-GGTCATGAAGAATCTGCAATATATGCAGGATCTT
1 CATTAACCATTACACGATGCTACTCACATGAGCT-ATGAAGAACCTGCAATACATGCAGAACCTT
* *
75020881 AGCCATCAATAAGGTATCCA
65 AACCATCAACAAGGTATCCA
75020901 CCACTGATAC
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
94 2 0.03
95 67 0.97
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (95 bp):
CATTAACCATTACACGATGCTACTCACATGAGCTATGAAGAACCTGCAATACATGCAGAACCTTA
ACCATCAACAAGGTATCCAATAAGTCGAGA
Found at i:75036826 original size:88 final size:88
Alignment explanation
Indices: 75036666--75036847 Score: 242
Period size: 88 Copynumber: 2.1 Consensus size: 88
75036656 TTAAGGGTGT
* * *
75036666 AAAAAGCCCTCAAACTTTTTCAAAAAAGCAATTAAGCCCCTGCTTTTTTTTTACACTTAATTGGG
1 AAAAAGCCCTCAAACTTTTTCAAAAAAGCAATTAAACCCCTACTTTTTTTTTACACTCAATTGGG
** ***
75036731 TTTTTGAAATTTTAAAATGCATC
66 TACTTGAAATGCAAAAATGCATC
*
75036754 AAAAAGACCCTTAAACTTTTTCAAAAAAAGCAATTAAACCCCTAC-TTTTTTTT-CACTCAATTG
1 AAAAAG-CCCTCAAACTTTTTC-AAAAAAGCAATTAAACCCCTACTTTTTTTTTACACTCAATTG
*
75036817 GGTACTTGAACTGCAAAAATGCATC
64 GGTACTTGAAATGCAAAAATGCATC
75036842 AAAAAG
1 AAAAAG
75036848 GCTCTTTGAC
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
88 40 0.49
89 22 0.27
90 20 0.24
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (88 bp):
AAAAAGCCCTCAAACTTTTTCAAAAAAGCAATTAAACCCCTACTTTTTTTTTACACTCAATTGGG
TACTTGAAATGCAAAAATGCATC
Found at i:75037106 original size:19 final size:18
Alignment explanation
Indices: 75037082--75037145 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 18
75037072 TTATAAAATT
75037082 TTATAAAATAGTAAGAAAA
1 TTATAAAATAGTAA-AAAA
75037101 TTATAAAA-AGTAAAGAAA
1 TTATAAAATAGTAAA-AAA
*
75037119 -TATAAAATTCGTAAAAAAA
1 TTATAAAA-TAGT-AAAAAA
75037138 TTATAAAA
1 TTATAAAA
75037146 ATTATCGTAC
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
17 8 0.21
18 8 0.21
19 13 0.33
20 10 0.26
ACGTcount: A:0.64, C:0.02, G:0.08, T:0.27
Consensus pattern (18 bp):
TTATAAAATAGTAAAAAA
Found at i:75037382 original size:8 final size:8
Alignment explanation
Indices: 75037371--75037464 Score: 53
Period size: 8 Copynumber: 10.6 Consensus size: 8
75037361 TTTACAATTT
75037371 TTTTTATA
1 TTTTTATA
*
75037379 TTTTTATGC
1 TTTTTAT-A
75037388 TTTTTATAA
1 TTTTTAT-A
75037397 TTTTTTATAA
1 -TTTTTAT-A
*
75037407 CTTTTAATA
1 -TTTTTATA
75037416 TTTTTTATA
1 -TTTTTATA
*
75037425 TTTTATTAAA
1 -TTT-TTATA
*
75037435 ATTTTATA
1 TTTTTATA
*
75037443 ATTTTATA
1 TTTTTATA
*
75037451 ATTTTATAA
1 TTTTTAT-A
75037460 TTTTT
1 TTTTT
75037465 TATAAATTTT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
8 26 0.37
9 26 0.37
10 19 0.27
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (8 bp):
TTTTTATA
Found at i:75037402 original size:19 final size:19
Alignment explanation
Indices: 75037313--75037423 Score: 62
Period size: 20 Copynumber: 5.6 Consensus size: 19
75037303 TAATAGTTAA
*
75037313 ATAACTTTTTTGATGCATTTT
1 ATAA-TTTTTT-ATGCTTTTT
* *
75037334 ATAATTTTTTTATGATATTT
1 ATAA-TTTTTTATGCTTTTT
** ***
75037354 ATAAAATTTTACAATTTTT
1 ATAATTTTTTATGCTTTTT
* *
75037373 TTTATATTTTTATGCTTTTT
1 ATAAT-TTTTTATGCTTTTT
* *
75037393 ATAATTTTTTATAACTTTTA
1 ATAATTTTTTAT-GCTTTTT
75037413 AT-ATTTTTTAT
1 ATAATTTTTTAT
75037424 ATTTTATTAA
Statistics
Matches: 68, Mismatches: 20, Indels: 6
0.72 0.21 0.06
Matches are distributed among these distances:
19 28 0.41
20 30 0.44
21 10 0.15
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.63
Consensus pattern (19 bp):
ATAATTTTTTATGCTTTTT
Found at i:75037402 original size:30 final size:31
Alignment explanation
Indices: 75037319--75037402 Score: 93
Period size: 30 Copynumber: 2.8 Consensus size: 31
75037309 TTAAATAACT
75037319 TTTTTGATGCATTTTATAATTTTTTTATGATA
1 TTTTT-ATGCATTTTATAATTTTTTTATGATA
* ** *
75037351 TTTATA-AAATTTTACAATTTTTTT-T-ATA
1 TTTTTATGCATTTTATAATTTTTTTATGATA
*
75037379 TTTTTATGCTTTTTATAATTTTTT
1 TTTTTATGCATTTTATAATTTTTT
75037403 ATAACTTTTA
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
28 8 0.19
29 14 0.33
30 15 0.36
31 1 0.02
32 4 0.10
ACGTcount: A:0.26, C:0.04, G:0.05, T:0.65
Consensus pattern (31 bp):
TTTTTATGCATTTTATAATTTTTTTATGATA
Found at i:75037411 original size:29 final size:29
Alignment explanation
Indices: 75037330--75037455 Score: 86
Period size: 29 Copynumber: 4.4 Consensus size: 29
75037320 TTTTGATGCA
*
75037330 TTTTATAATTTTTTTATGATATTTATAA-A-A
1 TTTTATAA-TTTTTTAT-ATATTT-TAATACT
* * * *
75037360 TTTTACAATTTTTTTTATATTTTTATGCT
1 TTTTATAATTTTTTATATATTTTAATACT
*
75037389 TTTTATAATTTTTTATA-ACTTTTAATATT
1 TTTTATAATTTTTTATATA-TTTTAATACT
* *
75037418 TTTTAT-ATTTTATTA-AAATTTT-ATA-A
1 TTTTATAATTTT-TTATATATTTTAATACT
75037444 TTTTATAATTTT
1 TTTTATAATTTT
75037456 ATAATTTTTT
Statistics
Matches: 79, Mismatches: 11, Indels: 15
0.75 0.10 0.14
Matches are distributed among these distances:
26 6 0.08
27 10 0.13
28 17 0.22
29 39 0.49
30 7 0.09
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (29 bp):
TTTTATAATTTTTTATATATTTTAATACT
Found at i:75037447 original size:26 final size:27
Alignment explanation
Indices: 75037389--75037474 Score: 77
Period size: 28 Copynumber: 3.1 Consensus size: 27
75037379 TTTTTATGCT
* * *
75037389 TTTTATAATTTTTTATAACTTTTA-ATA
1 TTTTATAATTTTATA-AAATTTTATAAA
*
75037416 TTTTTTATATTTTATTAAAATTTTAT-AA
1 TTTTATA-ATTTTA-TAAAATTTTATAAA
**
75037444 TTTTATAATTTTATAATTTTTTATAAA
1 TTTTATAATTTTATAAAATTTTATAAA
75037471 TTTT
1 TTTT
75037475 TTTGCCACAT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
26 9 0.19
27 18 0.38
28 19 0.40
29 2 0.04
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTTATAATTTTATAAAATTTTATAAA
Found at i:75037474 original size:11 final size:10
Alignment explanation
Indices: 75037330--75037476 Score: 82
Period size: 10 Copynumber: 15.4 Consensus size: 10
75037320 TTTTGATGCA
75037330 TTTTATAATTT
1 TTTTATAA-TT
*
75037341 TTTTATGA-T
1 TTTTATAATT
* **
75037350 ATTTATAAAA
1 TTTTATAATT
*
75037360 TTTTACAATT
1 TTTTATAATT
*
75037370 TTTT-TTATAT
1 TTTTATAAT-T
**
75037380 TTTTAT-GCT
1 TTTTATAATT
75037389 TTTTATAATT
1 TTTTATAATT
*
75037399 TTTTATAACT
1 TTTTATAATT
*
75037409 TTTAAT-ATT
1 TTTTATAATT
75037418 TTTTAT-ATT
1 TTTTATAATT
*
75037427 TTATTA-AA-A
1 TT-TTATAATT
75037436 TTTTATAA--
1 TTTTATAATT
75037444 TTTTATAA--
1 TTTTATAATT
75037452 TTTTATAATT
1 TTTTATAATT
75037462 TTTTATAAATT
1 TTTTAT-AATT
75037473 TTTT
1 TTTT
75037477 TGCCACATCA
Statistics
Matches: 107, Mismatches: 19, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
8 19 0.18
9 32 0.30
10 40 0.37
11 16 0.15
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.65
Consensus pattern (10 bp):
TTTTATAATT
Found at i:75037474 original size:19 final size:19
Alignment explanation
Indices: 75037351--75037474 Score: 82
Period size: 19 Copynumber: 6.6 Consensus size: 19
75037341 TTTTATGATA
*
75037351 TTTATAAAATTTTACAATTT
1 TTTAT-AAATTTTATAATTT
* *
75037371 TTTTTATATTTT-T-ATGCTT
1 TTTATAAATTTTATAAT--TT
* *
75037390 TTTATAATTTTTTATAACTT
1 TTTATAA-ATTTTATAATTT
* **
75037410 TTAATATTTTTTAT-ATTT
1 TTTATAAATTTTATAATTT
75037428 TATTA-AAATTTTATAA--T
1 T-TTATAAATTTTATAATTT
75037445 TTTAT-AATTTTATAATTT
1 TTTATAAATTTTATAATTT
75037463 TTTATAAATTTT
1 TTTATAAATTTT
75037475 TTTGCCACAT
Statistics
Matches: 80, Mismatches: 13, Indels: 23
0.69 0.11 0.20
Matches are distributed among these distances:
16 13 0.16
17 4 0.05
18 17 0.21
19 29 0.36
20 15 0.19
21 1 0.01
22 1 0.01
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (19 bp):
TTTATAAATTTTATAATTT
Found at i:75039428 original size:26 final size:26
Alignment explanation
Indices: 75039399--75039474 Score: 143
Period size: 26 Copynumber: 2.9 Consensus size: 26
75039389 ATTGATAAAA
*
75039399 GGTTAGGTAAATGTTCCATGATAATG
1 GGTTAGGTAAATGTTTCATGATAATG
75039425 GGTTAGGTAAATGTTTCATGATAATG
1 GGTTAGGTAAATGTTTCATGATAATG
75039451 GGTTAGGTAAATGTTTCATGATAA
1 GGTTAGGTAAATGTTTCATGATAA
75039475 GAATTTCATG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
GGTTAGGTAAATGTTTCATGATAATG
Found at i:75049186 original size:9 final size:9
Alignment explanation
Indices: 75049172--75049196 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
75049162 GACTAAAATG
75049172 TGAAATAAA
1 TGAAATAAA
75049181 TGAAATAAA
1 TGAAATAAA
75049190 TGAAATA
1 TGAAATA
75049197 TATGGAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (9 bp):
TGAAATAAA
Found at i:75052650 original size:7 final size:7
Alignment explanation
Indices: 75052638--75052668 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
75052628 TAGATAATTT
75052638 TTTTCTC
1 TTTTCTC
75052645 TTTTCTC
1 TTTTCTC
75052652 TTTTCTC
1 TTTTCTC
75052659 TTTTCT-
1 TTTTCTC
75052665 TTTT
1 TTTT
75052669 GTTGTAGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.17
7 20 0.83
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTCTC
Found at i:75058170 original size:6 final size:6
Alignment explanation
Indices: 75058161--75058191 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
75058151 AATTTAATAA
75058161 TAATTT TAATTT TAATTT TAATTT TAGATTT
1 TAATTT TAATTT TAATTT TAATTT TA-ATTT
75058192 AGATTTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (6 bp):
TAATTT
Found at i:75058176 original size:18 final size:19
Alignment explanation
Indices: 75058153--75058191 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
75058143 CTGCACGAAA
75058153 TTTAATAATAATTTTA-AT
1 TTTAATAATAATTTTAGAT
**
75058171 TTTAATTTTAATTTTAGAT
1 TTTAATAATAATTTTAGAT
75058190 TT
1 TT
75058192 AGATTTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTAATAATAATTTTAGAT
Found at i:75064955 original size:21 final size:21
Alignment explanation
Indices: 75064929--75064969 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75064919 AGACGAGCAA
* *
75064929 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
75064950 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
75064970 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:75073124 original size:290 final size:290
Alignment explanation
Indices: 75072604--75073203 Score: 1123
Period size: 290 Copynumber: 2.1 Consensus size: 290
75072594 CCTCAAGATT
75072604 CAAACAAAACACAATAGTTTTTGTTTGAAATATTATTTTTCTATGGAGCAGAGAATATTCAGACT
1 CAAACAAAACACAATAGTTTTTGTTTGAAATATTATTTTTCTATGGAGCAGAGAATATTCAGACT
*
75072669 TCCAAGTGACAGTGAAAATTTCAAAATCTCTAACATGGATCCAAAATAACATCCCCTAGAAAAAA
66 TCCAAGTGACAGTGAAAATTTCAAAAACTCTAACATGGATCCAAAATAACATCCCCTAGAAAAAA
75072734 ATTTAAAACTATATCAAGAGCTACAAAACCTACCCCTAATATAGAACCCAAACATTCACAATATC
131 ATTTAAAACTATATCAAGAGCTACAAAACCTACCCCTAATATAGAACCCAAACATTCACAATATC
75072799 TGAAGCTCTCAGATACAGGTCAACTTATTCTATACAACAGATCAAAATTTCTTATCTAATTTTCT
196 TGAAGCTCTCAGATACAGGTCAACTTATTCTATACAACAGATCAAAATTTCTTATCTAATTTTCT
75072864 CAACTCTGTGTAATGGCCACGATAAAATGG
261 CAACTCTGTGTAATGGCCACGATAAAATGG
75072894 CAAACAAAACACAATAGTTTTTGTTTGAAATATTATTTTTCTATGGAGCAGAGAATATTCAGACT
1 CAAACAAAACACAATAGTTTTTGTTTGAAATATTATTTTTCTATGGAGCAGAGAATATTCAGACT
* *
75072959 TCCAAGTGACAGTGAAAATTTCAAAAACTCTAACATGGATCCAAAATAACATTCCCTATAAAAAA
66 TCCAAGTGACAGTGAAAATTTCAAAAACTCTAACATGGATCCAAAATAACATCCCCTAGAAAAAA
75073024 ATTTAAAACTATATCAAGAGCTACAAAACCTACCCCTAATATAGAACCCAAACATTCACAATATC
131 ATTTAAAACTATATCAAGAGCTACAAAACCTACCCCTAATATAGAACCCAAACATTCACAATATC
**
75073089 TGAAGCTCTCAGATACAGGTTGACTTATTCTATACAACAGATCAAAATTTCTTATCTAATTTTCT
196 TGAAGCTCTCAGATACAGGTCAACTTATTCTATACAACAGATCAAAATTTCTTATCTAATTTTCT
75073154 CAACTCTGTGTAATGGCCACGATAAAATGG
261 CAACTCTGTGTAATGGCCACGATAAAATGG
* *
75073184 AAAACAAACCAC-AT-GTTTTT
1 CAAACAAAACACAATAGTTTTT
75073204 TACTCATAGT
Statistics
Matches: 303, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
288 6 0.02
289 2 0.01
290 295 0.97
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.29
Consensus pattern (290 bp):
CAAACAAAACACAATAGTTTTTGTTTGAAATATTATTTTTCTATGGAGCAGAGAATATTCAGACT
TCCAAGTGACAGTGAAAATTTCAAAAACTCTAACATGGATCCAAAATAACATCCCCTAGAAAAAA
ATTTAAAACTATATCAAGAGCTACAAAACCTACCCCTAATATAGAACCCAAACATTCACAATATC
TGAAGCTCTCAGATACAGGTCAACTTATTCTATACAACAGATCAAAATTTCTTATCTAATTTTCT
CAACTCTGTGTAATGGCCACGATAAAATGG
Found at i:75077240 original size:28 final size:28
Alignment explanation
Indices: 75077209--75077276 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
75077199 GTAATGTAAA
*
75077209 AATATGGTCGTTAAAATATGATTGTTAC
1 AATATGGCCGTTAAAATATGATTGTTAC
** *
75077237 AATATGGCCACTGAAATATGATTGTTAC
1 AATATGGCCGTTAAAATATGATTGTTAC
75077265 AATATGGCCGTT
1 AATATGGCCGTT
75077277 GGAATCTGAC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (28 bp):
AATATGGCCGTTAAAATATGATTGTTAC
Found at i:75078549 original size:6 final size:6
Alignment explanation
Indices: 75078534--75078587 Score: 60
Period size: 6 Copynumber: 9.0 Consensus size: 6
75078524 AAGATAAACG
75078534 TTAA-A TTAATA TTAATA TTAATA TTAATA -TAATTA GTTTAATA TTAA-A
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAA-TA --TTAATA TTAATA
75078582 TTAATA
1 TTAATA
75078588 AAATACAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
5 12 0.28
6 26 0.60
8 2 0.05
9 3 0.07
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (6 bp):
TTAATA
Found at i:75078599 original size:25 final size:26
Alignment explanation
Indices: 75078535--75078599 Score: 62
Period size: 25 Copynumber: 2.5 Consensus size: 26
75078525 AGATAAACGT
75078535 TAAATTAATATTAATATTAATATTAATA
1 TAAA-TAA-ATTAATATTAATATTAATA
* **
75078563 TAATTAGTTTAATATTAA-ATTAATA
1 TAAATAAATTAATATTAATATTAATA
75078588 -AAATACAATTAA
1 TAAATA-AATTAA
75078600 GATTCCTAGT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
24 4 0.13
25 11 0.37
26 10 0.33
27 2 0.07
28 3 0.10
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (26 bp):
TAAATAAATTAATATTAATATTAATA
Found at i:75081194 original size:16 final size:16
Alignment explanation
Indices: 75081162--75081197 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
75081152 ATCATTATTT
**
75081162 AAATAAAATAATGGTA
1 AAATAAAATAAAAGTA
75081178 AAATAAAATAAAAGTA
1 AAATAAAATAAAAGTA
75081194 AAAT
1 AAAT
75081198 CTCTATAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.22
Consensus pattern (16 bp):
AAATAAAATAAAAGTA
Found at i:75090594 original size:9 final size:9
Alignment explanation
Indices: 75090580--75090614 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
75090570 TGATACTCGT
75090580 AAATTACTA
1 AAATTACTA
75090589 AAATTACTA
1 AAATTACTA
*
75090598 AAATTACTG
1 AAATTACTA
75090607 AAATTACT
1 AAATTACT
75090615 CGTAAATGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.51, C:0.11, G:0.03, T:0.34
Consensus pattern (9 bp):
AAATTACTA
Found at i:75096603 original size:19 final size:19
Alignment explanation
Indices: 75096581--75096620 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
75096571 AAAAAAAAAA
75096581 AAAAAAAAAGTCTGCCATG
1 AAAAAAAAAGTCTGCCATG
* * *
75096600 AAAAAGATAGTCTGCCTTG
1 AAAAAAAAAGTCTGCCATG
75096619 AA
1 AA
75096621 GATGGAGTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.20
Consensus pattern (19 bp):
AAAAAAAAAGTCTGCCATG
Found at i:75100081 original size:87 final size:85
Alignment explanation
Indices: 75099934--75100210 Score: 284
Period size: 87 Copynumber: 3.2 Consensus size: 85
75099924 AGCTATCGAA
* ** * * * * * * *
75099934 TATGAAAAGGGATAGTTTCAGCTATCGAATATGAAAACGGATAGTTTCAGCTATCAATTATGACA
1 TATGAAAAGGGATGGTGACAACCATCAAATATGAAAAGGGATAGCTTCGGCTATCGATTATGA-A
*
75099999 ACGGATGGTAACGACCATCAAC
65 AAGGATGGT-ACGACCATCAAC
* *
75100021 TATGAAAAGGGATGGTGACAACCATCAAATATAAAAAGGGATAGCTTCGGCTATTGATTATGAAA
1 TATGAAAAGGGATGGTGACAACCATCAAATATGAAAAGGGATAGCTTCGGCTATCGATTATGAAA
* *
75100086 AGAGATGGTGACAAACATCAAC
66 AG-GATGGT-ACGACCATCAAC
* * * * *
75100108 TATGAAAAGGGATGGTGACGACCATCCAATAGGAAAAGGGATAGCTTCGGCAATCGAATATGAAA
1 TATGAAAAGGGATGGTGACAACCATCAAATATGAAAAGGGATAGCTTCGGCTATCGATTATGAAA
* * * *
75100173 AGGGATAGCTTCGACTATCAAA
66 A-GGAT-GGTACGACCATCAAC
75100195 TATGAAAAGGGATGGT
1 TATGAAAAGGGATGGT
75100211 TTCGACCATC
Statistics
Matches: 158, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
86 3 0.02
87 152 0.96
88 3 0.02
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (85 bp):
TATGAAAAGGGATGGTGACAACCATCAAATATGAAAAGGGATAGCTTCGGCTATCGATTATGAAA
AGGATGGTACGACCATCAAC
Found at i:75100214 original size:29 final size:29
Alignment explanation
Indices: 75099899--75100216 Score: 185
Period size: 29 Copynumber: 10.9 Consensus size: 29
75099889 TCGACAACCC
* *
75099899 TCAAATAATGAAAAGGAATAGCTTC-AGCTA
1 TCAAAT-ATGAAAAGGGATAGTTTCGA-CTA
*
75099929 TCGAATATGAAAAGGGATAGTTTC-AGCTA
1 TCAAATATGAAAAGGGATAGTTTCGA-CTA
* *
75099958 TCGAATATGAAAACGGATAGTTTC-AGCTA
1 TCAAATATGAAAAGGGATAGTTTCGA-CTA
* * * * ** *
75099987 TCAATTATGACAACGGATGGTAACGACCA
1 TCAAATATGAAAAGGGATAGTTTCGACTA
* * ** * *
75100016 TCAACTATGAAAAGGGATGGTGACAACCA
1 TCAAATATGAAAAGGGATAGTTTCGACTA
* * *
75100045 TCAAATATAAAAAGGGATAGCTTCGGCTA
1 TCAAATATGAAAAGGGATAGTTTCGACTA
** * * * ** *
75100074 TTGATTATGAAAAGAGATGGTGACAAAC-A
1 TCAAATATGAAAAGGGATAGTTTC-GACTA
* * ** *
75100103 TCAACTATGAAAAGGGATGGTGACGACCA
1 TCAAATATGAAAAGGGATAGTTTCGACTA
* * * * *
75100132 TCCAATAGGAAAAGGGATAGCTTCGGCAA
1 TCAAATATGAAAAGGGATAGTTTCGACTA
* *
75100161 TCGAATATGAAAAGGGATAGCTTCGACTA
1 TCAAATATGAAAAGGGATAGTTTCGACTA
*
75100190 TCAAATATGAAAAGGGATGGTTTCGAC
1 TCAAATATGAAAAGGGATAGTTTCGAC
75100217 CATCGATTAA
Statistics
Matches: 228, Mismatches: 57, Indels: 7
0.78 0.20 0.02
Matches are distributed among these distances:
28 2 0.01
29 219 0.96
30 7 0.03
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (29 bp):
TCAAATATGAAAAGGGATAGTTTCGACTA
Found at i:75101466 original size:46 final size:49
Alignment explanation
Indices: 75101384--75101582 Score: 158
Period size: 52 Copynumber: 4.0 Consensus size: 49
75101374 TTGCACATTG
* *** *
75101384 TCACATATCA-CACACCGAAGCCATAGCCCTGCTATGGTCTTACACGG-A
1 TCAC-TATCATCACACCGATGCCATAGCCCAAATATGGTCTTATACGGAA
* *
75101432 TCAC-ATCA-CACACTGATGCCATATCCCAAATATGGTCTTATACGGAA
1 TCACTATCATCACACCGATGCCATAGCCCAAATATGGTCTTATACGGAA
*
75101479 TCACATTATCATGTCACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAA
1 TCAC--TATCA--TCACACCGATGCCATAGCCCAAATATGGTCTTATAC-GGAA
* ** *
75101533 -CACATATCAT-ATTGCACCGATGCCATAGCCTAGCTATGGTCTTAAACGGA
1 TCAC-TATCATCA---CACCGATGCCATAGCCCAAATATGGTCTTATACGGA
75101583 CGCACATATC
Statistics
Matches: 126, Mismatches: 14, Indels: 19
0.79 0.09 0.12
Matches are distributed among these distances:
46 34 0.27
47 5 0.04
48 4 0.03
49 1 0.01
50 5 0.04
51 3 0.02
52 35 0.28
53 35 0.28
54 4 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TCACTATCATCACACCGATGCCATAGCCCAAATATGGTCTTATACGGAA
Found at i:75101589 original size:52 final size:51
Alignment explanation
Indices: 75101440--75101593 Score: 182
Period size: 52 Copynumber: 2.9 Consensus size: 51
75101430 GATCACATCA
* * * *
75101440 CACACTGATGCCATATCCCAAATATGGTCTTATACGGAATCACATTATCATGT
1 CACACCGATGCCATAGCCCAGATATGGTCTTATACGGAA-CACA-TATCATAT
75101493 CACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAACACATATCATAT
1 CACACCGATGCCATAGCCCAGATATGGTCTTATAC-GGAACACATATCATAT
** * * * *
75101545 TGCACCGATGCCATAGCCTAGCTATGGTCTTAAACGGACGCACATATCA
1 CACACCGATGCCATAGCCCAGATATGGTCTTATACGGA-ACACATATCA
75101594 CATCTTTTCC
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
51 3 0.03
52 46 0.52
53 36 0.40
54 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (51 bp):
CACACCGATGCCATAGCCCAGATATGGTCTTATACGGAACACATATCATAT
Found at i:75108939 original size:53 final size:52
Alignment explanation
Indices: 75108847--75109013 Score: 151
Period size: 52 Copynumber: 3.2 Consensus size: 52
75108837 TCTTACATGG
* * *
75108847 ATCACATCACACACCGATGCTATA-TCCCAGATATAGTCTTATA-CGGAATCACATT
1 ATCACAT--CACACCGATGCCATAGT-CCAGCTATGGTCTTATATCGGAA-CACA-T
** *
75108902 ATCATGTCACACCGATGCCATAGTCCAGCTATGGTCTTATATGGGAACACAT
1 ATCACATCACACCGATGCCATAGTCCAGCTATGGTCTTATATCGGAACACAT
** * * **
75108954 ATCACATTGCACCGATGCCATAG-CCTAGCTATGGTCTTAAATTGGTGCACAT
1 ATCACATCACACCGATGCCATAGTCC-AGCTATGGTCTTATATCGGAACACAT
75109006 ATCACATC
1 ATCACATC
75109014 TTTTCCGTCG
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
51 2 0.02
52 49 0.52
53 33 0.35
54 5 0.05
55 5 0.05
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (52 bp):
ATCACATCACACCGATGCCATAGTCCAGCTATGGTCTTATATCGGAACACAT
Found at i:75108972 original size:52 final size:52
Alignment explanation
Indices: 75108911--75109012 Score: 152
Period size: 52 Copynumber: 2.0 Consensus size: 52
75108901 TATCATGTCA
*
75108911 CACCGATGCCATAGTCC-AGCTATGGTCTTATATGGGAACACATATCACATTG
1 CACCGATGCCATAG-CCTAGCTATGGTCTTAAATGGGAACACATATCACATTG
* **
75108963 CACCGATGCCATAGCCTAGCTATGGTCTTAAATTGGTGCACATATCACAT
1 CACCGATGCCATAGCCTAGCTATGGTCTTAAATGGGAACACATATCACAT
75109013 CTTTTCCGTC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.04
52 43 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (52 bp):
CACCGATGCCATAGCCTAGCTATGGTCTTAAATGGGAACACATATCACATTG
Found at i:75112560 original size:22 final size:22
Alignment explanation
Indices: 75112535--75112620 Score: 100
Period size: 22 Copynumber: 3.9 Consensus size: 22
75112525 CTCTAATTTA
*
75112535 TTAGCACATTAGTGCTCTTTGT
1 TTAGCACATTAGTGCTCTCTGT
** *
75112557 TTAGCACATGGGTGCTCTCTGA
1 TTAGCACATTAGTGCTCTCTGT
* *
75112579 TCAGCTCATTAGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
**
75112601 TTAGCACATCGGTGCTCTCT
1 TTAGCACATTAGTGCTCTCT
75112621 ATTCTATTAG
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.16, C:0.24, G:0.21, T:0.38
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCTGT
Found at i:75120554 original size:42 final size:42
Alignment explanation
Indices: 75120501--75120596 Score: 147
Period size: 42 Copynumber: 2.3 Consensus size: 42
75120491 CACATGGCCA
* *
75120501 AGACACACGCCCGTGTTCTAGGCTGTGTAGTACACACAGTTG
1 AGACACACGCCCGTGTTCTAGGCCGTGTAGTACACACAGCTG
* * *
75120543 AGACACGCGCCCGTGTTCTAGGCCGTGTGGTACACACGGCTG
1 AGACACACGCCCGTGTTCTAGGCCGTGTAGTACACACAGCTG
75120585 AGACACACGCCC
1 AGACACACGCCC
75120597 ATGTCTCTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (42 bp):
AGACACACGCCCGTGTTCTAGGCCGTGTAGTACACACAGCTG
Found at i:75120613 original size:42 final size:42
Alignment explanation
Indices: 75120501--75120613 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 42
75120491 CACATGGCCA
* * *
75120501 AGACACACGCCCGTGTTCTAGGCTGTGTAGTACACACAGTTG
1 AGACACACGCCCGTGTTCTAGCCTGTGTGGTACACACAGCTG
* *
75120543 AGACACGCGCCCGTGTTCTAGGCC-GTGTGGTACACACGGCTG
1 AGACACACGCCCGTGTTCTA-GCCTGTGTGGTACACACAGCTG
*
75120585 AGACACACGCCCATGTCTCT-GCCTGTGTG
1 AGACACACGCCCGTGT-TCTAGCCTGTGTG
75120614 CTCAATTCTG
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
41 3 0.05
42 53 0.87
43 5 0.08
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.22
Consensus pattern (42 bp):
AGACACACGCCCGTGTTCTAGCCTGTGTGGTACACACAGCTG
Found at i:75126443 original size:24 final size:24
Alignment explanation
Indices: 75126416--75126467 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
75126406 TTCGTAAGTC
* *
75126416 AAATAAATTATGCTAGTAAATACT
1 AAATAAATTATACTAATAAATACT
*
75126440 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
75126464 AAAT
1 AAAT
75126468 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:75127343 original size:21 final size:21
Alignment explanation
Indices: 75127321--75127374 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
75127311 TCAATTTTTA
*
75127321 AAATTTATAAAAAT-AGAAAT
1 AAATATATAAAAATAAGAAAT
75127341 AAATATATAAAAATAAGAAA-
1 AAATATATAAAAATAAGAAAT
*
75127361 ACATATAATAAAAA
1 AAATAT-ATAAAAA
75127375 AGTATAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (21 bp):
AAATATATAAAAATAAGAAAT
Found at i:75127354 original size:10 final size:10
Alignment explanation
Indices: 75127320--75127386 Score: 50
Period size: 10 Copynumber: 6.6 Consensus size: 10
75127310 ATCAATTTTT
*
75127320 AAAATTTATA
1 AAAATATATA
*
75127330 AAAATAGA-A
1 AAAATATATA
75127339 ATAAATATATA
1 A-AAATATATA
*
75127350 AAAATA-AGA
1 AAAATATATA
75127359 AAACATATAATA
1 AAA-ATAT-ATA
75127371 AAAA-AGTATA
1 AAAATA-TATA
75127381 AAAATA
1 AAAATA
75127387 AAAATTCATT
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
9 7 0.16
10 28 0.62
11 5 0.11
12 5 0.11
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (10 bp):
AAAATATATA
Found at i:75131859 original size:19 final size:19
Alignment explanation
Indices: 75131831--75131868 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
75131821 TTTATTTACT
75131831 TTGAAATTAGAATTTTGAA
1 TTGAAATTAGAATTTTGAA
*
75131850 TTGAAGTTAGAATTTTGAA
1 TTGAAATTAGAATTTTGAA
75131869 GAATTTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (19 bp):
TTGAAATTAGAATTTTGAA
Found at i:75132510 original size:23 final size:23
Alignment explanation
Indices: 75132461--75132511 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
75132451 AACATTAACA
* * **
75132461 TAAATGAACATGTTCGCAAATGT
1 TAAACGAACATGTTCACAAATAC
*
75132484 TAAACGAACATGTTCACAGATAC
1 TAAACGAACATGTTCACAAATAC
75132507 TAAAC
1 TAAAC
75132512 AAATAGATCC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (23 bp):
TAAACGAACATGTTCACAAATAC
Found at i:75136764 original size:181 final size:185
Alignment explanation
Indices: 75136437--75136777 Score: 419
Period size: 181 Copynumber: 1.9 Consensus size: 185
75136427 CAAGATGTTC
** *
75136437 AAAGTTGCTGTGACACTTGTTGTATCTGTTGGCCTGTAAGCTTTCCTTTCCTTCTGCTACTGTAA
1 AAAGTTGCTGTGACACTTCCTGTATCTGTTGGCCTGTAAGCTTTCC-TTCCTTCTGC-ACTATAA
* * * *
75136502 GTTTTTCATGGTAACATGAATTGATATACTAATGCCAACTGACAACAAAATGTAGCAAGTATATT
64 GTTTTTCAGGGAAACATGAATTGATATACTAATGCAAACTAACAACAAAATGTAGCAAGTATATT
**
75136567 ACGATATAAACTTTCTTATTAATCAATTCATCTTACATTGAACAATAATTACTATTT
129 AAAATATAAACTTTCTTATTAATCAATTCATCTTACATTGAACAATAATTACTATTT
* *
75136624 AAAGTTGCTGTGGCGCTTCCTGTATCTGTTGGCCTGTAAGCATTT-C-T-CTTCT-C-CTATAA-
1 AAAGTTGCTGTGACACTTCCTGTATCTGTTGGCCTGTAAGC-TTTCCTTCCTTCTGCACTATAAG
* * * *
75136683 TGTTTTCAGGGAAACATGAATTGATATACTAATGGAAACTAAGAGCAATATGTAGCGAA-TA-AG
65 T-TTTTCAGGGAAACATGAATTGATATACTAATGCAAACTAACAACAAAATGTAGC-AAGTATA-
* *
75136746 TTAAAATTTAATCTTTCTTATTAATCAATTCA
127 TTAAAATATAAACTTTCTTATTAATCAATTCA
75136778 ACATACATCC
Statistics
Matches: 133, Mismatches: 17, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
180 2 0.02
181 81 0.61
182 2 0.02
183 1 0.01
184 5 0.04
185 1 0.01
187 38 0.29
188 3 0.02
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (185 bp):
AAAGTTGCTGTGACACTTCCTGTATCTGTTGGCCTGTAAGCTTTCCTTCCTTCTGCACTATAAGT
TTTTCAGGGAAACATGAATTGATATACTAATGCAAACTAACAACAAAATGTAGCAAGTATATTAA
AATATAAACTTTCTTATTAATCAATTCATCTTACATTGAACAATAATTACTATTT
Found at i:75150698 original size:40 final size:40
Alignment explanation
Indices: 75150653--75150771 Score: 175
Period size: 40 Copynumber: 3.0 Consensus size: 40
75150643 CCTTGTTGCT
**
75150653 TAGCAGGCTTCGTGCCGGTGTACTTATCGGGCTTAATGCC
1 TAGCAGGCTTCGTGTTGGTGTACTTATCGGGCTTAATGCC
* ** *
75150693 TAGCAGGCTTCGTGTTGGTTTACTTATCAAGCTTAGTGCC
1 TAGCAGGCTTCGTGTTGGTGTACTTATCGGGCTTAATGCC
*
75150733 TAGCATGCTTCGTGTTGGTGTACTTATCGGGCTTAATGC
1 TAGCAGGCTTCGTGTTGGTGTACTTATCGGGCTTAATGC
75150772 TTAGTACGTT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.16, C:0.21, G:0.28, T:0.35
Consensus pattern (40 bp):
TAGCAGGCTTCGTGTTGGTGTACTTATCGGGCTTAATGCC
Found at i:75150797 original size:80 final size:80
Alignment explanation
Indices: 75150653--75150815 Score: 200
Period size: 80 Copynumber: 2.0 Consensus size: 80
75150643 CCTTGTTGCT
* * ***
75150653 TAGCAGGCTTCGTGCCGGTGTACTTATCGGGCTTAATGCCTAGCAGGCTTCGTGTTGGTTTACTT
1 TAGCAGGCTTCGTGCCGGTGTACTTATCGGGCTTAATGCCTAGCACGCTTCGTGTCGACATACTT
75150718 ATCAAGCTTAGTGCC
66 ATCAAGCTTAGTGCC
* ** * * * *
75150733 TAGCATGCTTCGTGTTGGTGTACTTATCGGGCTTAATGCTTAGTACGTTTTGTGTCGACATACTT
1 TAGCAGGCTTCGTGCCGGTGTACTTATCGGGCTTAATGCCTAGCACGCTTCGTGTCGACATACTT
* *
75150798 ATCAGGGTTAGTGCC
66 ATCAAGCTTAGTGCC
75150813 TAG
1 TAG
75150816 TAAGCTTTAA
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 69 1.00
ACGTcount: A:0.17, C:0.20, G:0.27, T:0.36
Consensus pattern (80 bp):
TAGCAGGCTTCGTGCCGGTGTACTTATCGGGCTTAATGCCTAGCACGCTTCGTGTCGACATACTT
ATCAAGCTTAGTGCC
Found at i:75154466 original size:940 final size:940
Alignment explanation
Indices: 75152648--75154532 Score: 3770
Period size: 940 Copynumber: 2.0 Consensus size: 940
75152638 CCTACCGAAT
75152648 AAAACATGTAAAAGAAATTAAATGAAATCCAAACTCCTCAAGTCTACTTTCAAGCAAACAAACAA
1 AAAACATGTAAAAGAAATTAAATGAAATCCAAACTCCTCAAGTCTACTTTCAAGCAAACAAACAA
75152713 ATGGATCAATCTTGCTTTTTAGAACATAAAATCTAATGAAACCTAACCCTAAATTTTCATTTCCT
66 ATGGATCAATCTTGCTTTTTAGAACATAAAATCTAATGAAACCTAACCCTAAATTTTCATTTCCT
75152778 ATTATTGTAGAAAATTGATTTGGAGGTTGCCGAGGAAAAAAGTATGACATGGATGTGGTAGTAAG
131 ATTATTGTAGAAAATTGATTTGGAGGTTGCCGAGGAAAAAAGTATGACATGGATGTGGTAGTAAG
75152843 GGTCTGAACCCTATATTATAACTCTCTTTTTACTAGATTATGATGTATTTGCGATATCGATCAAA
196 GGTCTGAACCCTATATTATAACTCTCTTTTTACTAGATTATGATGTATTTGCGATATCGATCAAA
75152908 TTTTTTATAATAAAAGATAAAATTGAGTTCTTAAAGATGATAATATTTTGGGTTTGAATTTTATA
261 TTTTTTATAATAAAAGATAAAATTGAGTTCTTAAAGATGATAATATTTTGGGTTTGAATTTTATA
75152973 AATATTTTCTTTTAGATTTTATATAAAAATACAAAATTGATTTCAAAATAAAATCTTCTGCTTTG
326 AATATTTTCTTTTAGATTTTATATAAAAATACAAAATTGATTTCAAAATAAAATCTTCTGCTTTG
75153038 TTAAAATAAAAGGTTTTTAGTAACTCTACAATTAAGTTGTGACTTAATTGATGGGTGACATTAGC
391 TTAAAATAAAAGGTTTTTAGTAACTCTACAATTAAGTTGTGACTTAATTGATGGGTGACATTAGC
75153103 TCAATCAAAATATTAACTATAGCTAAAAATTTTATTGCACGCATATGCGTGTGGAAATCTCATAC
456 TCAATCAAAATATTAACTATAGCTAAAAATTTTATTGCACGCATATGCGTGTGGAAATCTCATAC
75153168 TTAAAATATAAATTTGAGTTTAAAAATAACATACAATAAATAATGAAACATATGGTTCGAACTAA
521 TTAAAATATAAATTTGAGTTTAAAAATAACATACAATAAATAATGAAACATATGGTTCGAACTAA
75153233 TTAATAATAACACATGAAATATGTAAGATATTAAAATAAAAGATAAATTAAATTGTGAGTAAAAC
586 TTAATAATAACACATGAAATATGTAAGATATTAAAATAAAAGATAAATTAAATTGTGAGTAAAAC
75153298 GAAATTTAAATATATAATATTAAGATTATTAAATGGATACAATTGTTTATCATGATATTGCCATT
651 GAAATTTAAATATATAATATTAAGATTATTAAATGGATACAATTGTTTATCATGATATTGCCATT
75153363 AAAATTGAGTTGGTGTCAAGTTAATTTGCAACACCAACTCAATTAATAACATTATTAATATATAG
716 AAAATTGAGTTGGTGTCAAGTTAATTTGCAACACCAACTCAATTAATAACATTATTAATATATAG
75153428 AATTGATAGAGGTAATTAAGTGTGTATGAAATTATTATTTTTTGAAGAAAAGGACTAGGCTTTTC
781 AATTGATAGAGGTAATTAAGTGTGTATGAAATTATTATTTTTTGAAGAAAAGGACTAGGCTTTTC
75153493 TTACTCAAATTAAAGCCAAACATCAAAACAAACTTGAAGTCCAAAAACGGACCCAGAAGAAAAAA
846 TTACTCAAATTAAAGCCAAACATCAAAACAAACTTGAAGTCCAAAAACGGACCCAGAAGAAAAAA
75153558 ACAAAACCCAAAAATCTAAAACAGAAAAAG
911 ACAAAACCCAAAAATCTAAAACAGAAAAAG
75153588 AAAACATGTAAAAGAAATTAAATGAAATCCAAACTCCTCAAGTCTACTTTCAAGCAAACAAACAA
1 AAAACATGTAAAAGAAATTAAATGAAATCCAAACTCCTCAAGTCTACTTTCAAGCAAACAAACAA
75153653 ATGGATCAATCTTGCTTTTTAGAACATAAAATCTAATGAAACCTAACCCTAAATTTTCATTTCCT
66 ATGGATCAATCTTGCTTTTTAGAACATAAAATCTAATGAAACCTAACCCTAAATTTTCATTTCCT
75153718 ATTATTGTAGAAAATTGATTTGGAGGTTGCCGAGGAAAAAAGTATGACATGGATGTGGTAGTAAG
131 ATTATTGTAGAAAATTGATTTGGAGGTTGCCGAGGAAAAAAGTATGACATGGATGTGGTAGTAAG
75153783 GGTCTGAACCCTATATTATAACTCTCTTTTTACTAGATTATGATGTATTTGCGATATCGATCAAA
196 GGTCTGAACCCTATATTATAACTCTCTTTTTACTAGATTATGATGTATTTGCGATATCGATCAAA
75153848 TTTTTTATAATAAAAGATAAAATTGAGTTCTTAAAGATGATAATATTTTGGGTTTGAATTTTATA
261 TTTTTTATAATAAAAGATAAAATTGAGTTCTTAAAGATGATAATATTTTGGGTTTGAATTTTATA
75153913 AATATTTTCTTTTAGATTTTATATAAAAATACAAAATTGATTTCAAAATAAAATCTTCTGCTTTG
326 AATATTTTCTTTTAGATTTTATATAAAAATACAAAATTGATTTCAAAATAAAATCTTCTGCTTTG
75153978 TTAAAATAAAAGGTTTTTAGTAACTCTACAATTAAGTTGTGACTTAATTGATGGGTGACATTAGC
391 TTAAAATAAAAGGTTTTTAGTAACTCTACAATTAAGTTGTGACTTAATTGATGGGTGACATTAGC
75154043 TCAATCAAAATATTAACTATAGCTAAAAATTTTATTGCACGCATATGCGTGTGGAAATCTCATAC
456 TCAATCAAAATATTAACTATAGCTAAAAATTTTATTGCACGCATATGCGTGTGGAAATCTCATAC
75154108 TTAAAATATAAATTTGAGTTTAAAAATAACATACAATAAATAATGAAACATATGGTTCGAACTAA
521 TTAAAATATAAATTTGAGTTTAAAAATAACATACAATAAATAATGAAACATATGGTTCGAACTAA
75154173 TTAATAATAACACATGAAATATGTAAGATATTAAAATAAAAGATAAATTAAATTGTGAGTAAAAC
586 TTAATAATAACACATGAAATATGTAAGATATTAAAATAAAAGATAAATTAAATTGTGAGTAAAAC
75154238 GAAATTTAAATATATAATATTAAGATTATTAAATGGATACAATTGTTTATCATGATATTGCCATT
651 GAAATTTAAATATATAATATTAAGATTATTAAATGGATACAATTGTTTATCATGATATTGCCATT
75154303 AAAATTGAGTTGGTGTCAAGTTAATTTGCAACACCAACTCAATTAATAACATTATTAATATATAG
716 AAAATTGAGTTGGTGTCAAGTTAATTTGCAACACCAACTCAATTAATAACATTATTAATATATAG
75154368 AATTGATAGAGGTAATTAAGTGTGTATGAAATTATTATTTTTTGAAGAAAAGGACTAGGCTTTTC
781 AATTGATAGAGGTAATTAAGTGTGTATGAAATTATTATTTTTTGAAGAAAAGGACTAGGCTTTTC
75154433 TTACTCAAATTAAAGCCAAACATCAAAACAAACTTGAAGTCCAAAAACGGACCCAGAAGAAAAAA
846 TTACTCAAATTAAAGCCAAACATCAAAACAAACTTGAAGTCCAAAAACGGACCCAGAAGAAAAAA
75154498 ACAAAACCCAAAAATCTAAAACAGAAAAAG
911 ACAAAACCCAAAAATCTAAAACAGAAAAAG
75154528 AAAAC
1 AAAAC
75154533 TAAGCCAGTC
Statistics
Matches: 945, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
940 945 1.00
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (940 bp):
AAAACATGTAAAAGAAATTAAATGAAATCCAAACTCCTCAAGTCTACTTTCAAGCAAACAAACAA
ATGGATCAATCTTGCTTTTTAGAACATAAAATCTAATGAAACCTAACCCTAAATTTTCATTTCCT
ATTATTGTAGAAAATTGATTTGGAGGTTGCCGAGGAAAAAAGTATGACATGGATGTGGTAGTAAG
GGTCTGAACCCTATATTATAACTCTCTTTTTACTAGATTATGATGTATTTGCGATATCGATCAAA
TTTTTTATAATAAAAGATAAAATTGAGTTCTTAAAGATGATAATATTTTGGGTTTGAATTTTATA
AATATTTTCTTTTAGATTTTATATAAAAATACAAAATTGATTTCAAAATAAAATCTTCTGCTTTG
TTAAAATAAAAGGTTTTTAGTAACTCTACAATTAAGTTGTGACTTAATTGATGGGTGACATTAGC
TCAATCAAAATATTAACTATAGCTAAAAATTTTATTGCACGCATATGCGTGTGGAAATCTCATAC
TTAAAATATAAATTTGAGTTTAAAAATAACATACAATAAATAATGAAACATATGGTTCGAACTAA
TTAATAATAACACATGAAATATGTAAGATATTAAAATAAAAGATAAATTAAATTGTGAGTAAAAC
GAAATTTAAATATATAATATTAAGATTATTAAATGGATACAATTGTTTATCATGATATTGCCATT
AAAATTGAGTTGGTGTCAAGTTAATTTGCAACACCAACTCAATTAATAACATTATTAATATATAG
AATTGATAGAGGTAATTAAGTGTGTATGAAATTATTATTTTTTGAAGAAAAGGACTAGGCTTTTC
TTACTCAAATTAAAGCCAAACATCAAAACAAACTTGAAGTCCAAAAACGGACCCAGAAGAAAAAA
ACAAAACCCAAAAATCTAAAACAGAAAAAG
Found at i:75154572 original size:34 final size:34
Alignment explanation
Indices: 75154529--75154597 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
75154519 CAGAAAAAGA
75154529 AAACTAAGCCAGTCTATCATCTTAGGAAGTGTGT
1 AAACTAAGCCAGTCTATCATCTTAGGAAGTGTGT
75154563 AAACTAAGCCAGTCTATCATCTTAGGAAGTGTGT
1 AAACTAAGCCAGTCTATCATCTTAGGAAGTGTGT
75154597 A
1 A
75154598 CCTGTCCCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (34 bp):
AAACTAAGCCAGTCTATCATCTTAGGAAGTGTGT
Found at i:75154933 original size:20 final size:20
Alignment explanation
Indices: 75154910--75154948 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
75154900 TATCAATAGT
75154910 TTTCTTAAGATATCGATATA
1 TTTCTTAAGATATCGATATA
*
75154930 TTTCTTAAGGTATCGATAT
1 TTTCTTAAGATATCGATAT
75154949 TCCTGCTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (20 bp):
TTTCTTAAGATATCGATATA
Found at i:75155945 original size:29 final size:31
Alignment explanation
Indices: 75155897--75155960 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
75155887 TTTATAGTTA
*
75155897 TTTAATTAGATAATTCTTATT-TATTTAATAT
1 TTTAATAAGATAATTCTTATTAT-TTTAATAT
*
75155928 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTCTTATTATTTTAATAT
75155957 TTTA
1 TTTA
75155961 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTCTTATTATTTTAATAT
Found at i:75155949 original size:8 final size:8
Alignment explanation
Indices: 75155938--75155962 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
75155928 TTTAATAAGA
75155938 TATTTTAT
1 TATTTTAT
75155946 TATTTTAT
1 TATTTTAT
75155954 TATTTTAT
1 TATTTTAT
75155962 T
1 T
75155963 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:75164002 original size:43 final size:43
Alignment explanation
Indices: 75163948--75164097 Score: 221
Period size: 43 Copynumber: 3.5 Consensus size: 43
75163938 ATTTATTCAA
*
75163948 AAAAGCGCCGCTAAAAGTCATGGCTTTTAGTGGCATTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGG
* *
75163991 AAAAGCACCGCTAAAAGCCATGGCTTTTAGCGGCATTTGTTGGG
1 AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTG-TGGG
* * *
75164035 -AAAGCGTCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGAG
1 AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGG
*
75164077 AAAAGCGCTGCTAAAAGTCAT
1 AAAAGCGCCGCTAAAAGTCAT
75164098 AACCTTTAGC
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
42 3 0.03
43 88 0.93
44 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGGG
Found at i:75164132 original size:86 final size:86
Alignment explanation
Indices: 75163949--75164132 Score: 219
Period size: 86 Copynumber: 2.1 Consensus size: 86
75163939 TTTATTCAAA
* * **
75163949 AAAGCGCCGCTAAAAGTCATGGCTTTTAGTGGCATTTGTGGGAAAAGCACCGCTAAAAGCCATGG
1 AAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGAGAAAAGCACCGCTAAAAGCCATAA
* * **
75164014 CTTTTAGCGGCATTTGTTGGG
66 CCTTTAGCGACATTTGTTGAC
* * * * *
75164035 AAAGCGTCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGAGAAAAGCGCTGCTAAAAGTCATAA
1 AAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGAGAAAAGCACCGCTAAAAGCCATAA
75164100 CCTTTAGCGACACTTT-TCTGAC
66 CCTTTAGCGACA-TTTGT-TGAC
75164122 AAA-CGCCGCTA
1 AAAGCGCCGCTA
75164133 TAAAATGGAC
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
86 74 0.90
87 8 0.10
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (86 bp):
AAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTGAGAAAAGCACCGCTAAAAGCCATAA
CCTTTAGCGACATTTGTTGAC
Found at i:75164995 original size:69 final size:68
Alignment explanation
Indices: 75164913--75165246 Score: 363
Period size: 69 Copynumber: 4.9 Consensus size: 68
75164903 ATAAGTACTT
* * * *
75164913 AAACACTTTAATTTGCAACATTTAAGCACTTCAATTTACAGCATTTAAACACTTGAATTTGCAGC
1 AAACACTTCAATTTGCAGCATTTAA-CACTTCAATTTACAGCATTTAAACACTTCAATTTACAGC
75164978 ACTC
65 ACTC
*
75164982 AAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCACTTT-AACA-TCTCAATTAACA
1 AAACACTTCAATTTGCAGCA-TTTAACACTTCAATTTACAGCA-TTTAAACACT-TCAATTTACA
* *
75165045 ACACTT
63 GCACTC
* * * ** * * ** *
75165051 ATACACCTCAA-TTACAGCGATAAAACA-TCTCAATGTCCAGCAACTAAACACTTCAATTTGCAG
1 AAACACTTCAATTTGCAGC-ATTTAACACT-TCAATTTACAGCATTTAAACACTTCAATTTACAG
* *
75165114 TACTT
64 CACTC
*
75165119 AAACACTTCAATTTGCAACATTTAAGCACTTCAATTTACAGCATTTAAACACTTCAATTTACAGC
1 AAACACTTCAATTTGCAGCATTTAA-CACTTCAATTTACAGCATTTAAACACTTCAATTTACAGC
*
75165184 ATTC
65 ACTC
75165188 AAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAACA-TCTCAATT
1 AAACACTTCAATTTGCAGCA-TTTAACACTTCAATTTACAGCATTTAAACACT-TCAATT
75165247 AACAACATTT
Statistics
Matches: 218, Mismatches: 35, Indels: 24
0.79 0.13 0.09
Matches are distributed among these distances:
67 2 0.01
68 53 0.24
69 149 0.68
70 14 0.06
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (68 bp):
AAACACTTCAATTTGCAGCATTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCA
CTC
Found at i:75165261 original size:206 final size:206
Alignment explanation
Indices: 75164906--75165284 Score: 697
Period size: 206 Copynumber: 1.8 Consensus size: 206
75164896 ACCCAAAATA
* *
75164906 AGTACTTAAACACTTTAATTTGCAACATTTAAGCACTTCAATTTACAGCATTTAAACACTTGAAT
1 AGTACTTAAACACTTCAATTTGCAACATTTAAGCACTTCAATTTACAGCATTTAAACACTTCAAT
*
75164971 TTGCAGCACTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCACTTTAACATCT
66 TTACAGCACTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCACTTTAACATCT
75165036 CAATTAACAACACTTATACACCTCAATTACAGCGATAAAACATCTCAATGTCCAGCAACTAAACA
131 CAATTAACAACACTTATACACCTCAATTACAGCGATAAAACATCTCAATGTCCAGCAACTAAACA
75165101 CTTCAATTTGC
196 CTTCAATTTGC
75165112 AGTACTTAAACACTTCAATTTGCAACATTTAAGCACTTCAATTTACAGCATTTAAACACTTCAAT
1 AGTACTTAAACACTTCAATTTGCAACATTTAAGCACTTCAATTTACAGCATTTAAACACTTCAAT
*
75165177 TTACAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCA-TTTAAACATC
66 TTACAGCACTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCACTTT-AACATC
*
75165241 TCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACAT
130 TCAATTAACAACACTTATACACCTCAATTACAGCGATAAAACAT
75165285 GAGTGCTGTC
Statistics
Matches: 167, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
205 3 0.02
206 164 0.98
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (206 bp):
AGTACTTAAACACTTCAATTTGCAACATTTAAGCACTTCAATTTACAGCATTTAAACACTTCAAT
TTACAGCACTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCACTTTAACATCT
CAATTAACAACACTTATACACCTCAATTACAGCGATAAAACATCTCAATGTCCAGCAACTAAACA
CTTCAATTTGC
Found at i:75165270 original size:23 final size:23
Alignment explanation
Indices: 75164911--75165274 Score: 323
Period size: 23 Copynumber: 15.9 Consensus size: 23
75164901 AAATAAGTAC
* * *
75164911 TTAAACACTTTAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
*
75164934 TTAAGCACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* * *
75164957 TTAAACACTTGAATTTGCAGCAC
1 TTAAACACTTCAATTTACAGCAT
* *
75164980 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
75165004 TT-AACACTTCAATTTACAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * *
75165027 TT-AACA-TCTCAATTAACAACAC
1 TTAAACACT-TCAATTTACAGCAT
* *
75165049 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTACAGC-AT
* * * *
75165071 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* * * *
75165094 CTAAACACTTCAATTTGCAGTAC
1 TTAAACACTTCAATTTACAGCAT
* *
75165117 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
*
75165140 TTAAGCACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
75165163 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
75165186 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
75165210 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
75165232 TTAAACA-TCTCAATTAACAACAT
1 TTAAACACT-TCAATTTACAGCAT
* *
75165255 TTATACACCTCAA-TTACAGC
1 TTAAACACTTCAATTTACAGC
75165275 GATAAAACAT
Statistics
Matches: 279, Mismatches: 49, Indels: 27
0.79 0.14 0.08
Matches are distributed among these distances:
22 27 0.10
23 248 0.89
24 4 0.01
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (23 bp):
TTAAACACTTCAATTTACAGCAT
Found at i:75176070 original size:24 final size:24
Alignment explanation
Indices: 75176038--75176084 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
75176028 CCTCAAAAAC
*
75176038 AGGCTCTAATTGGTTCCTTGGAGA
1 AGGCTCTAATTGGTTCATTGGAGA
75176062 AGGCTCTAATTGGTTCATTGGAG
1 AGGCTCTAATTGGTTCATTGGAG
75176085 TTCTTTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.34
Consensus pattern (24 bp):
AGGCTCTAATTGGTTCATTGGAGA
Found at i:75178596 original size:7 final size:7
Alignment explanation
Indices: 75178576--75178613 Score: 51
Period size: 8 Copynumber: 5.3 Consensus size: 7
75178566 TTAAATATTA
75178576 AATTTTT
1 AATTTTT
75178583 AAGTTTTT
1 AA-TTTTT
75178591 AATTTTTT
1 AA-TTTTT
75178599 AATTTTT
1 AATTTTT
75178606 -ATTTTT
1 AATTTTT
75178612 AA
1 AA
75178614 ATTAAATGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
6 6 0.21
7 8 0.29
8 14 0.50
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (7 bp):
AATTTTT
Found at i:75178597 original size:16 final size:15
Alignment explanation
Indices: 75178573--75178616 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
75178563 ATATTAAATA
*
75178573 TTAAATTTTTAAGTTT
1 TTAATTTTTTAA-TTT
75178589 TTAATTTTTTAATTT
1 TTAATTTTTTAATTT
*
75178604 TT-ATTTTTAAATT
1 TTAATTTTTTAATT
75178617 AAATGAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 10 0.38
15 5 0.19
16 11 0.42
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (15 bp):
TTAATTTTTTAATTT
Found at i:75179756 original size:15 final size:16
Alignment explanation
Indices: 75179721--75179768 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
75179711 AGGGGTTATA
75179721 GTTTAGTG-TTTAGGG
1 GTTTAGTGTTTTAGGG
*
75179736 TTTTTAG-GTTTTAGGG
1 -GTTTAGTGTTTTAGGG
75179752 GTTTAGTGTTTTAGGG
1 GTTTAGTGTTTTAGGG
75179768 G
1 G
75179769 CTATAGATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.21
16 22 0.79
ACGTcount: A:0.12, C:0.00, G:0.38, T:0.50
Consensus pattern (16 bp):
GTTTAGTGTTTTAGGG
Found at i:75179782 original size:53 final size:55
Alignment explanation
Indices: 75179691--75179814 Score: 144
Period size: 53 Copynumber: 2.3 Consensus size: 55
75179681 CATATGATAT
* * * * *
75179691 TTTTTGGGATTTAGGGTTTTAGGGGTTATAGTTTAGTGTTTA-G-GGTTTTTAGG
1 TTTTAGGGATTTAGGGTTTTAGGGGCTATAGATCAGTGTTTATGAGATTTTTAGG
* * *
75179744 TTTTAGGGGTTTAGTGTTTTAGGGGCTATAGATCAGTGTTTATGATATTTTTAGG
1 TTTTAGGGATTTAGGGTTTTAGGGGCTATAGATCAGTGTTTATGAGATTTTTAGG
* *
75179799 GTTTAGGGTTTTAGGG
1 TTTTAGGGATTTAGGG
75179815 GTTATATGAC
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 36 0.62
54 1 0.02
55 21 0.36
ACGTcount: A:0.17, C:0.02, G:0.33, T:0.48
Consensus pattern (55 bp):
TTTTAGGGATTTAGGGTTTTAGGGGCTATAGATCAGTGTTTATGAGATTTTTAGG
Found at i:75179870 original size:41 final size:41
Alignment explanation
Indices: 75179825--75180112 Score: 303
Period size: 41 Copynumber: 7.1 Consensus size: 41
75179815 GTTATATGAC
*
75179825 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
* ** *
75179866 TTTTAGCGGCGTTTTGCTAAAAGCACCGCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
* * *
75179907 TTTTAGAGGCGTTTGACCGAAAGCGTCGCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
* * *
75179948 TTTTAGAGGCGTTTTACCGAAAGCGCCGCTAATTCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
** * * *
75179989 TTTTAATGGCGTTTTACCGAAAGCGTCGCTATTGCTCTATT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
** ** * * *
75180030 TTTTAGCGGCGTTTTACTAAAAATGCCACTATTGCT-TTGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
* * * *
75180070 TTTTAGCGGCG--TAACCAAAAACGCCGCTATTGCTCTATGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTA-GT
75180110 TTT
1 TTT
75180113 ACAATTTTTG
Statistics
Matches: 207, Mismatches: 38, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
38 19 0.09
39 1 0.00
40 18 0.09
41 169 0.82
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
Found at i:75182964 original size:18 final size:17
Alignment explanation
Indices: 75182932--75182965 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
75182922 ACTTAGTTGA
*
75182932 TATAAAAAATTAAAATG
1 TATAAAAAATCAAAATG
75182949 TATAAAAACATCAAAAT
1 TATAAAAA-ATCAAAAT
75182966 TAAGTTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (17 bp):
TATAAAAAATCAAAATG
Found at i:75186535 original size:5 final size:5
Alignment explanation
Indices: 75186527--75186552 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
75186517 TAGGTTAGGA
75186527 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
75186553 TAATTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:75194686 original size:31 final size:29
Alignment explanation
Indices: 75194622--75194695 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 29
75194612 TGAACCAAAC
75194622 TAAAATTTCATATATAAAATCACACAAAAT
1 TAAAA-TTCATATATAAAATCACACAAAAT
* * *
75194652 TAAAATTCATGTATAACATTACACATTAAAT
1 TAAAATTCATATATAAAATCACACA--AAAT
*
75194683 TAAAGTTCATATA
1 TAAAATTCATATA
75194696 CAATTTTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 17 0.46
30 5 0.14
31 15 0.41
ACGTcount: A:0.51, C:0.12, G:0.03, T:0.34
Consensus pattern (29 bp):
TAAAATTCATATATAAAATCACACAAAAT
Found at i:75197599 original size:16 final size:18
Alignment explanation
Indices: 75197578--75197610 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75197568 AGTCCAATAA
75197578 TTAGAA-AA-AAAACAAT
1 TTAGAACAATAAAACAAT
75197594 TTAGAACAATAAAACAA
1 TTAGAACAATAAAACAA
75197611 AAACAAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.67, C:0.09, G:0.06, T:0.18
Consensus pattern (18 bp):
TTAGAACAATAAAACAAT
Found at i:75199154 original size:20 final size:19
Alignment explanation
Indices: 75199105--75199154 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
75199095 TAATCGAGTG
*
75199105 GTTAATTAGGCTTTAATTAA
1 GTTAATTA-GCTTAAATTAA
*
75199125 GTGAATTTAGCTTAAATTAAA
1 GTTAA-TTAGCTTAAATT-AA
75199146 GTTAATTAG
1 GTTAATTAG
75199155 GTATAAGGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.38, C:0.04, G:0.16, T:0.42
Consensus pattern (19 bp):
GTTAATTAGCTTAAATTAA
Found at i:75199248 original size:5 final size:5
Alignment explanation
Indices: 75199238--75199275 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
75199228 TAATTTTAAA
75199238 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
75199276 TATGTAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:75199466 original size:19 final size:18
Alignment explanation
Indices: 75199438--75199475 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 18
75199428 TGAAACAAAT
75199438 GAAATAAAAAGAAATAAA
1 GAAATAAAAAGAAATAAA
75199456 GAAATAGAAAAGAAATAAA
1 GAAATA-AAAAGAAATAAA
75199475 G
1 G
75199476 TAACAGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (18 bp):
GAAATAAAAAGAAATAAA
Found at i:75199469 original size:11 final size:10
Alignment explanation
Indices: 75199438--75199474 Score: 51
Period size: 11 Copynumber: 3.8 Consensus size: 10
75199428 TGAAACAAAT
75199438 GAAATAAAAA
1 GAAATAAAAA
75199448 GAAAT--AAA
1 GAAATAAAAA
75199456 GAAATAGAAAA
1 GAAATA-AAAA
75199467 GAAATAAA
1 GAAATAAA
75199475 GTAACAGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
8 8 0.33
10 7 0.29
11 9 0.38
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.11
Consensus pattern (10 bp):
GAAATAAAAA
Found at i:75199483 original size:19 final size:19
Alignment explanation
Indices: 75199444--75199483 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
75199434 AAATGAAATA
*
75199444 AAAAGAAATAAAGAAATAG
1 AAAAGAAATAAAGAAACAG
*
75199463 AAAAGAAATAAAGTAACAG
1 AAAAGAAATAAAGAAACAG
75199482 AA
1 AA
75199484 TATGAAACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.72, C:0.03, G:0.15, T:0.10
Consensus pattern (19 bp):
AAAAGAAATAAAGAAACAG
Found at i:75200253 original size:44 final size:44
Alignment explanation
Indices: 75200204--75200295 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
75200194 TGTTTAGGGA
75200204 TACTTCGACCTT-GAGTCAATGAGGCA-CTATAAGTGTCGTACTGT
1 TACTTCGA-CTTCGAGTCAATGAGGCACCT-TAAGTGTCGTACTGT
* * **
75200248 TACTTCGACTTCGATTCGATGAGGCACCTTGTGTGTCGTACTGT
1 TACTTCGACTTCGAGTCAATGAGGCACCTTAAGTGTCGTACTGT
75200292 TACT
1 TACT
75200296 ATTACTTCGA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 3 0.07
44 37 0.88
45 2 0.05
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.35
Consensus pattern (44 bp):
TACTTCGACTTCGAGTCAATGAGGCACCTTAAGTGTCGTACTGT
Found at i:75200516 original size:18 final size:18
Alignment explanation
Indices: 75200477--75200558 Score: 74
Period size: 18 Copynumber: 4.6 Consensus size: 18
75200467 GACTAGCTAT
* * *
75200477 TACTGAATAATTGATCGT
1 TACTGAATAACTGATTGC
75200495 TACTGAATAACTGATTGC
1 TACTGAATAACTGATTGC
** * **
75200513 TACTGAGCAAATGATTAT
1 TACTGAATAACTGATTGC
* *
75200531 TCCTGAATAACTAATTGC
1 TACTGAATAACTGATTGC
75200549 TACTGAATAA
1 TACTGAATAA
75200559 TTGAATGTTA
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (18 bp):
TACTGAATAACTGATTGC
Found at i:75200570 original size:18 final size:18
Alignment explanation
Indices: 75200476--75200570 Score: 59
Period size: 18 Copynumber: 5.3 Consensus size: 18
75200466 TGACTAGCTA
*
75200476 TTACTGAATAATTG-ATCG
1 TTACTGAATAACTGAAT-G
*
75200494 TTACTGAATAACTGATTG
1 TTACTGAATAACTGAATG
* ** * * *
75200512 CTACTGAGCAAATGATTA
1 TTACTGAATAACTGAATG
*
75200530 TTCCTGAATAACT-AATTG
1 TTACTGAATAACTGAA-TG
* *
75200548 CTACTGAATAATTGAATG
1 TTACTGAATAACTGAATG
75200566 TTACT
1 TTACT
75200571 AAATGAAACT
Statistics
Matches: 56, Mismatches: 18, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
17 1 0.02
18 52 0.93
19 3 0.05
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.37
Consensus pattern (18 bp):
TTACTGAATAACTGAATG
Done.