Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 226 of 284
Found at i:75201931 original size:15 final size:15
Alignment explanation
Indices: 75201913--75202009 Score: 58
Period size: 15 Copynumber: 6.3 Consensus size: 15
75201903 TAATGCAACT
75201913 TAAAATAATAATATA
1 TAAAATAATAATATA
*
75201928 TAAAACAATTTAATATA
1 TAAAATAA--TAATATA
* *
75201945 -AAACATAGA-AA-GTC
1 TAAA-ATA-ATAATATA
*
75201959 TAAAATGAATAATATG
1 TAAAAT-AATAATATA
* *
75201975 TAAAAAAATAA-ATT
1 TAAAATAATAATATA
75201989 TAAAATAAATAATATA
1 TAAAAT-AATAATATA
75202005 TAAAA
1 TAAAA
75202010 ATATATAAAT
Statistics
Matches: 62, Mismatches: 10, Indels: 19
0.68 0.11 0.21
Matches are distributed among these distances:
14 11 0.18
15 25 0.40
16 16 0.26
17 9 0.15
18 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (15 bp):
TAAAATAATAATATA
Found at i:75201978 original size:16 final size:16
Alignment explanation
Indices: 75201959--75202009 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
75201949 ATAGAAAGTC
* *
75201959 TAAAATGAATAATATG
1 TAAAATAAATAATATA
*
75201975 TAAAA-AAATAA-ATT
1 TAAAATAAATAATATA
75201989 TAAAATAAATAATATA
1 TAAAATAAATAATATA
75202005 TAAAA
1 TAAAA
75202010 ATATATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 7 0.23
15 11 0.37
16 12 0.40
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (16 bp):
TAAAATAAATAATATA
Found at i:75201993 original size:30 final size:32
Alignment explanation
Indices: 75201959--75202019 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 32
75201949 ATAGAAAGTC
* *
75201959 TAAAATGAATAATATGTAAAAA-A-ATAAATT
1 TAAAATAAATAATATATAAAAATATATAAATT
75201989 TAAAATAAATAATATATAAAAATATATAAAT
1 TAAAATAAATAATATATAAAAATATATAAAT
75202020 CAATTTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 20 0.74
31 1 0.04
32 6 0.22
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (32 bp):
TAAAATAAATAATATATAAAAATATATAAATT
Found at i:75202245 original size:27 final size:26
Alignment explanation
Indices: 75202172--75202247 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 26
75202162 TATTAAATGG
* *
75202172 TTTAAAATAAATAACGTAT-AAAATA
1 TTTAGAATAAATAACGTATAAAAAAA
* *
75202197 TTTAGAATAAATAACATGTAAAAGAAA
1 TTTAGAATAAATAACGTATAAAA-AAA
* *
75202224 TTTGGAATAAATAATGTATAAAAA
1 TTTAGAATAAATAACGTATAAAAA
75202248 CCGTTTAACT
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
25 16 0.39
26 4 0.10
27 21 0.51
ACGTcount: A:0.58, C:0.03, G:0.09, T:0.30
Consensus pattern (26 bp):
TTTAGAATAAATAACGTATAAAAAAA
Found at i:75212928 original size:17 final size:17
Alignment explanation
Indices: 75212888--75212921 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
75212878 TATATTAAAA
* *
75212888 TTATTATTATTATGGTT
1 TTATAATTATTATGATT
75212905 TTATAATTATTATGATT
1 TTATAATTATTATGATT
75212922 ATTTAATGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (17 bp):
TTATAATTATTATGATT
Found at i:75213308 original size:24 final size:24
Alignment explanation
Indices: 75213281--75213332 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
75213271 ATAAAGAAAC
*
75213281 AAAAGGGAATAGAAACAGAAAAGA-
1 AAAAGGGAA-AGAAAAAGAAAAGAG
*
75213305 AAAAGGGAAAGAAAAATAAAAGAG
1 AAAAGGGAAAGAAAAAGAAAAGAG
75213329 AAAA
1 AAAA
75213333 CTAGGGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.71, C:0.02, G:0.23, T:0.04
Consensus pattern (24 bp):
AAAAGGGAAAGAAAAAGAAAAGAG
Found at i:75214334 original size:29 final size:29
Alignment explanation
Indices: 75214292--75214370 Score: 149
Period size: 29 Copynumber: 2.7 Consensus size: 29
75214282 TTCGGCTAGG
75214292 CCGATGAGACACTGGGTGCCAACTATTAT
1 CCGATGAGACACTGGGTGCCAACTATTAT
75214321 CCGATGAGACACTGGGTGCCAACTATTAT
1 CCGATGAGACACTGGGTGCCAACTATTAT
*
75214350 CCGATGAGGCACTGGGTGCCA
1 CCGATGAGACACTGGGTGCCA
75214371 TATTGGTGTG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (29 bp):
CCGATGAGACACTGGGTGCCAACTATTAT
Found at i:75214505 original size:18 final size:18
Alignment explanation
Indices: 75214482--75214522 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
75214472 AGAAAAAAAA
75214482 AGAAATT-GAATTATGAAT
1 AGAAATTGGAATTATG-AT
*
75214500 AGAAATTGGAATTGTGAT
1 AGAAATTGGAATTATGAT
75214518 AGAAA
1 AGAAA
75214523 GAGAAAAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (18 bp):
AGAAATTGGAATTATGAT
Found at i:75215033 original size:20 final size:20
Alignment explanation
Indices: 75215010--75215047 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
75215000 GTTATTAAGT
75215010 TAAAAATTATGTTA-ATGATA
1 TAAAAATTA-GTTATATGATA
*
75215030 TAAATATTAGTTATATGA
1 TAAAAATTAGTTATATGA
75215048 ATGTGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (20 bp):
TAAAAATTAGTTATATGATA
Found at i:75218173 original size:19 final size:20
Alignment explanation
Indices: 75218136--75218176 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
75218126 TACAACACAG
*
75218136 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
*
75218156 TTCAATTT-TTATTCAATAT
1 TTCAATTTCATATTCAATAT
75218175 TT
1 TT
75218177 GCCTAAATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:75218698 original size:26 final size:27
Alignment explanation
Indices: 75218651--75218701 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
75218641 CTTTATTTCA
*
75218651 TTTACTTATTTGTTTTATTATATTTAC
1 TTTACTTATTTGTTATATTATATTTAC
75218678 TTTA-TTATTATGTTATA-TATATTT
1 TTTACTTATT-TGTTATATTATATTT
75218702 TAACTTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (27 bp):
TTTACTTATTTGTTATATTATATTTAC
Found at i:75218703 original size:27 final size:28
Alignment explanation
Indices: 75218651--75218709 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 28
75218641 CTTTATTTCA
*
75218651 TTTACTTATTTGTTTTATTATATTT-AC
1 TTTACTTATTTGTTATATTATATTTAAC
75218678 TTTA-TTATTATGTTATA-TATATTTTAAC
1 TTTACTTATT-TGTTATATTATA-TTTAAC
75218706 TTTA
1 TTTA
75218710 ATTTATTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 9 0.32
27 13 0.46
28 6 0.21
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (28 bp):
TTTACTTATTTGTTATATTATATTTAAC
Found at i:75219257 original size:9 final size:9
Alignment explanation
Indices: 75219245--75219296 Score: 68
Period size: 9 Copynumber: 5.7 Consensus size: 9
75219235 TATTAAAAAC
75219245 GAGAGAGTT
1 GAGAGAGTT
*
75219254 GAGAGACTT
1 GAGAGAGTT
*
75219263 GAGAGGGTTT
1 GAGAGAG-TT
*
75219273 GAGAGAATT
1 GAGAGAGTT
75219282 GAGAGAGTT
1 GAGAGAGTT
75219291 GAGAGA
1 GAGAGA
75219297 AGGATGTGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
9 29 0.81
10 7 0.19
ACGTcount: A:0.35, C:0.02, G:0.42, T:0.21
Consensus pattern (9 bp):
GAGAGAGTT
Found at i:75219276 original size:19 final size:18
Alignment explanation
Indices: 75219245--75219297 Score: 79
Period size: 19 Copynumber: 2.9 Consensus size: 18
75219235 TATTAAAAAC
*
75219245 GAGAGAGTTGAGAGACTT
1 GAGAGAGTTGAGAGAATT
*
75219263 GAGAGGGTTTGAGAGAATT
1 GAGAGAG-TTGAGAGAATT
75219282 GAGAGAGTTGAGAGAA
1 GAGAGAGTTGAGAGAA
75219298 GGATGTGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.36, C:0.02, G:0.42, T:0.21
Consensus pattern (18 bp):
GAGAGAGTTGAGAGAATT
Found at i:75220084 original size:22 final size:21
Alignment explanation
Indices: 75220054--75220094 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
75220044 TGTGTAGAGC
*
75220054 ATTATTAAAATTTATAAAAAAT
1 ATTAATAAAATTT-TAAAAAAT
75220076 ATTAATAAAATTTTAAAAA
1 ATTAATAAAATTTTAAAAA
75220095 TTAAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
ATTAATAAAATTTTAAAAAAT
Found at i:75220101 original size:28 final size:28
Alignment explanation
Indices: 75220068--75220121 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
75220058 TTAAAATTTA
*
75220068 TAAAAAATATTAATAAAAT-TTTAAAAAT
1 TAAAAAATAATAA-AAAATATTTAAAAAT
*
75220096 TAAAAAATAATAAAAACTATTTAAAA
1 TAAAAAATAATAAAAAATATTTAAAA
75220122 GTTATGTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (28 bp):
TAAAAAATAATAAAAAATATTTAAAAAT
Found at i:75220382 original size:17 final size:17
Alignment explanation
Indices: 75220362--75220411 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
75220352 AAGCCACCTC
75220362 ACTAACTCTATCACCCT
1 ACTAACTCTATCACCCT
*
75220379 ACTAAGT-TA-C-CCC-
1 ACTAACTCTATCACCCT
*
75220392 ACTAACTCTATTACCCT
1 ACTAACTCTATCACCCT
75220409 ACT
1 ACT
75220412 TGCAACCATG
Statistics
Matches: 26, Mismatches: 3, Indels: 8
0.70 0.08 0.22
Matches are distributed among these distances:
13 6 0.23
14 5 0.19
15 1 0.04
16 5 0.19
17 9 0.35
ACGTcount: A:0.30, C:0.38, G:0.02, T:0.30
Consensus pattern (17 bp):
ACTAACTCTATCACCCT
Found at i:75220400 original size:30 final size:30
Alignment explanation
Indices: 75220330--75220411 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
75220320 ACTAAACTGA
* *
75220330 CCACTAACTCCATCACCCCACTAAGCCACC
1 CCACTAACTCTATCACCCTACTAAGCCACC
* **
75220360 TCACTAACTCTATCACCCTACTAAGTTACC
1 CCACTAACTCTATCACCCTACTAAGCCACC
*
75220390 CCACTAACTCTATTACCCTACT
1 CCACTAACTCTATCACCCTACT
75220412 TGCAACCATG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.29, C:0.44, G:0.02, T:0.24
Consensus pattern (30 bp):
CCACTAACTCTATCACCCTACTAAGCCACC
Found at i:75220775 original size:3 final size:3
Alignment explanation
Indices: 75220767--75220899 Score: 100
Period size: 3 Copynumber: 45.0 Consensus size: 3
75220757 AGGGGAAGAG
75220767 TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT T-T TAT T-T TAT TACT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * *
75220810 T-T TAC TAT TAT T-T TA- TAT ATATT TAT TAC CAT TATT TATT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT TA-T TA-T TAT TAT
* * * * *
75220856 TAT TAG TAA CA- TAT TGT TAT TAT TAT TAA TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
75220900 AATGGCACTA
Statistics
Matches: 105, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
2 13 0.12
3 78 0.74
4 13 0.12
5 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:75221005 original size:30 final size:30
Alignment explanation
Indices: 75220971--75221038 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
75220961 TGTTCTTAAT
*
75220971 TATCACCCCACTAAGCCACCTCACTAACTC
1 TATCACCCCACTAAGCCACCCCACTAACTC
* **
75221001 TATCACCCTACTAAGTTACCCCACTAACTC
1 TATCACCCCACTAAGCCACCCCACTAACTC
*
75221031 TATTACCC
1 TATCACCC
75221039 TACTTGCAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.29, C:0.43, G:0.03, T:0.25
Consensus pattern (30 bp):
TATCACCCCACTAAGCCACCCCACTAACTC
Found at i:75221013 original size:17 final size:17
Alignment explanation
Indices: 75220993--75221042 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
75220983 AAGCCACCTC
75220993 ACTAACTCTATCACCCT
1 ACTAACTCTATCACCCT
*
75221010 ACTAAGT-TA-C-CCC-
1 ACTAACTCTATCACCCT
*
75221023 ACTAACTCTATTACCCT
1 ACTAACTCTATCACCCT
75221040 ACT
1 ACT
75221043 TGCAACCATG
Statistics
Matches: 26, Mismatches: 3, Indels: 8
0.70 0.08 0.22
Matches are distributed among these distances:
13 6 0.23
14 5 0.19
15 1 0.04
16 5 0.19
17 9 0.35
ACGTcount: A:0.30, C:0.38, G:0.02, T:0.30
Consensus pattern (17 bp):
ACTAACTCTATCACCCT
Found at i:75221406 original size:3 final size:3
Alignment explanation
Indices: 75221398--75221530 Score: 100
Period size: 3 Copynumber: 45.0 Consensus size: 3
75221388 AGGGGAAGAG
75221398 TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT T-T TAT T-T TAT TACT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * *
75221441 T-T TAC TAT TAT T-T TA- TAT ATATT TAT TAC CAT TATT TATT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT TA-T TA-T TAT TAT
* * * * *
75221487 TAT TAG TAA CA- TAT TGT TAT TAT TAT TAA TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
75221531 AATGGCACTA
Statistics
Matches: 105, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
2 13 0.12
3 78 0.74
4 13 0.12
5 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:75221544 original size:631 final size:631
Alignment explanation
Indices: 75220341--75221602 Score: 2524
Period size: 631 Copynumber: 2.0 Consensus size: 631
75220331 CACTAACTCC
75220341 ATCACCCCACTAAGCCACCTCACTAACTCTATCACCCTACTAAGTTACCCCACTAACTCTATTAC
1 ATCACCCCACTAAGCCACCTCACTAACTCTATCACCCTACTAAGTTACCCCACTAACTCTATTAC
75220406 CCTACTTGCAACCATGGAAGGAGGCAATCAGTTGTAAAATTTGGCTATAAAAGCCATTCAAAACT
66 CCTACTTGCAACCATGGAAGGAGGCAATCAGTTGTAAAATTTGGCTATAAAAGCCATTCAAAACT
75220471 ATTGTAAAGAGGGGTTGGTTTTTGGAGATTAATCAAAGATCAAAGCAAAAGAGGTTTTTTTTTGT
131 ATTGTAAAGAGGGGTTGGTTTTTGGAGATTAATCAAAGATCAAAGCAAAAGAGGTTTTTTTTTGT
75220536 CTATTCTCGTTTTAAGTTCTTTGTTTGTCTATTTTTTTCATTTCAATTTTATTTTATTTTTTTAT
196 CTATTCTCGTTTTAAGTTCTTTGTTTGTCTATTTTTTTCATTTCAATTTTATTTTATTTTTTTAT
75220601 ACGAAAGTAAAAATAAAGGGAAGAAGCTTACCCATTTTAAAATTACCGAAAAAGGGTTTTTTTGA
261 ACGAAAGTAAAAATAAAGGGAAGAAGCTTACCCATTTTAAAATTACCGAAAAAGGGTTTTTTTGA
75220666 GGTTCGGCTGCCGTGTACGGTGGCGCCGATAGTGGCTCATGGGGGTCTGGTGATCGGAGCAAGGT
326 GGTTCGGCTGCCGTGTACGGTGGCGCCGATAGTGGCTCATGGGGGTCTGGTGATCGGAGCAAGGT
75220731 CGGACTGATGGCCGGATTTAGATGGGAGGGGAAGAGTATTATTATTATTATTATTATTATTTTAT
391 CGGACTGATGGCCGGATTTAGATGGGAGGGGAAGAGTATTATTATTATTATTATTATTATTTTAT
75220796 TTTATTTTATTACTTTTACTATTATTTTATATATATTTATTACCATTATTTATTTATTATTATTA
456 TTTATTTTATTACTTTTACTATTATTTTATATATATTTATTACCATTATTTATTTATTATTATTA
75220861 GTAACATATTGTTATTATTATTAATATTATTATTATTATAATGGCACTATATTAATTAGTTTTGT
521 GTAACATATTGTTATTATTATTAATATTATTATTATTATAATGGCACTATATTAATTAGTTTTGT
75220926 ACTGTTATTACATTCATCACTTCTGTTATTACTACTGTTCTTAATT
586 ACTGTTATTACATTCATCACTTCTGTTATTACTACTGTTCTTAATT
75220972 ATCACCCCACTAAGCCACCTCACTAACTCTATCACCCTACTAAGTTACCCCACTAACTCTATTAC
1 ATCACCCCACTAAGCCACCTCACTAACTCTATCACCCTACTAAGTTACCCCACTAACTCTATTAC
75221037 CCTACTTGCAACCATGGAAGGAGGCAATCAGTTGTAAAATTTGGCTATAAAAGCCATTCAAAACT
66 CCTACTTGCAACCATGGAAGGAGGCAATCAGTTGTAAAATTTGGCTATAAAAGCCATTCAAAACT
75221102 ATTGTAAAGAGGGGTTGGTTTTTGGAGATTAATCAAAGATCAAAGCAAAAGAGGTTTTTTTTTGT
131 ATTGTAAAGAGGGGTTGGTTTTTGGAGATTAATCAAAGATCAAAGCAAAAGAGGTTTTTTTTTGT
75221167 CTATTCTCGTTTTAAGTTCTTTGTTTGTCTATTTTTTTCATTTCAATTTTATTTTATTTTTTTAT
196 CTATTCTCGTTTTAAGTTCTTTGTTTGTCTATTTTTTTCATTTCAATTTTATTTTATTTTTTTAT
75221232 ACGAAAGTAAAAATAAAGGGAAGAAGCTTACCCATTTTAAAATTACCGAAAAAGGGTTTTTTTGA
261 ACGAAAGTAAAAATAAAGGGAAGAAGCTTACCCATTTTAAAATTACCGAAAAAGGGTTTTTTTGA
75221297 GGTTCGGCTGCCGTGTACGGTGGCGCCGATAGTGGCTCATGGGGGTCTGGTGATCGGAGCAAGGT
326 GGTTCGGCTGCCGTGTACGGTGGCGCCGATAGTGGCTCATGGGGGTCTGGTGATCGGAGCAAGGT
75221362 CGGACTGATGGCCGGATTTAGATGGGAGGGGAAGAGTATTATTATTATTATTATTATTATTTTAT
391 CGGACTGATGGCCGGATTTAGATGGGAGGGGAAGAGTATTATTATTATTATTATTATTATTTTAT
75221427 TTTATTTTATTACTTTTACTATTATTTTATATATATTTATTACCATTATTTATTTATTATTATTA
456 TTTATTTTATTACTTTTACTATTATTTTATATATATTTATTACCATTATTTATTTATTATTATTA
75221492 GTAACATATTGTTATTATTATTAATATTATTATTATTATAATGGCACTATATTAATTAGTTTTGT
521 GTAACATATTGTTATTATTATTAATATTATTATTATTATAATGGCACTATATTAATTAGTTTTGT
75221557 ACTGTTATTACATTCATCACTTCTGTTATTACTACTGTTCTTAATT
586 ACTGTTATTACATTCATCACTTCTGTTATTACTACTGTTCTTAATT
75221603 TTCTTTATGC
Statistics
Matches: 631, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
631 631 1.00
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (631 bp):
ATCACCCCACTAAGCCACCTCACTAACTCTATCACCCTACTAAGTTACCCCACTAACTCTATTAC
CCTACTTGCAACCATGGAAGGAGGCAATCAGTTGTAAAATTTGGCTATAAAAGCCATTCAAAACT
ATTGTAAAGAGGGGTTGGTTTTTGGAGATTAATCAAAGATCAAAGCAAAAGAGGTTTTTTTTTGT
CTATTCTCGTTTTAAGTTCTTTGTTTGTCTATTTTTTTCATTTCAATTTTATTTTATTTTTTTAT
ACGAAAGTAAAAATAAAGGGAAGAAGCTTACCCATTTTAAAATTACCGAAAAAGGGTTTTTTTGA
GGTTCGGCTGCCGTGTACGGTGGCGCCGATAGTGGCTCATGGGGGTCTGGTGATCGGAGCAAGGT
CGGACTGATGGCCGGATTTAGATGGGAGGGGAAGAGTATTATTATTATTATTATTATTATTTTAT
TTTATTTTATTACTTTTACTATTATTTTATATATATTTATTACCATTATTTATTTATTATTATTA
GTAACATATTGTTATTATTATTAATATTATTATTATTATAATGGCACTATATTAATTAGTTTTGT
ACTGTTATTACATTCATCACTTCTGTTATTACTACTGTTCTTAATT
Found at i:75221996 original size:3 final size:3
Alignment explanation
Indices: 75221988--75222123 Score: 97
Period size: 3 Copynumber: 46.0 Consensus size: 3
75221978 AGGGGAAGAG
75221988 TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT T-T TAT T-T TAT TACT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * *
75222031 T-T TAC TAT TAT T-T TA- TAT ATATT TAT TAC CAT TATT TATT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT TA-T TA-T TAT TAT
* * * * * *
75222077 TAT TAG TAA CA- TAT TGT TAT TAT TAT TAT TTT TAT TTT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
75222124 AATGGCACTA
Statistics
Matches: 106, Mismatches: 16, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
2 13 0.12
3 79 0.75
4 13 0.12
5 1 0.01
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:75221998 original size:590 final size:591
Alignment explanation
Indices: 75221346--75222530 Score: 2257
Period size: 593 Copynumber: 2.0 Consensus size: 591
75221336 TGGGGGTCTG
75221346 GTGATCGGAGCAAGGTCGGACTGATGGCCGGATTTAGATGGGAGGGGAAGAGTATTATTATTATT
1 GTGATCGGAGCAAGGTCGGACTGATGGCCGGATTTAGATGGGAGGGGAAGAGTATTATTATTATT
75221411 ATTATTATTATTTTATTTTATTTTATTACTTTTACTATTATTTTATATATATTTATTACCATTAT
66 ATTATTATTATTTTATTTTATTTTATTACTTTTACTATTATTTTATATATATTTATTACCATTAT
75221476 TTATTTATTATTATTAGTAACATATTGTTATTATTATTA-ATATTATTATTATTATAATGGCACT
131 TTATTTATTATTATTAGTAACATATTGTTATTATTATTATATATTATTATTATTATAATGGCACT
*
75221540 ATATTAATTAGTTTTGTACTGTTATTACATTCATCACTTCTGTTATTACTACTGTTCTTAATTTT
196 ATATTAACTAGTTTTGTACTGTTATTACATTCATCACTTCTGTTATTACTACTGTTCTTAATTTT
*
75221605 CTTTATGCTTGCTATATTTTAGGTATTAATATATGTTATTAGGGTTATTATATTGCTATTTTCAT
261 CTTTATGCTTGCTATATTTTAGGTATTAATATATGTTATTAGGGTTATTATATTACTATTTTCAT
75221670 ATTGCATGTTATCATTTTTTTTTAAGTTTCAGCCGCCCAAATTCATTTTATTCAAAGATTTATCC
326 ATTGCATGTTATCA-TTTTTTTTAAGTTTCAGCCGCCCAAATTCATTTTATTCAAAGATTTATCC
* *
75221735 TCGATTGTTTTCAAAATAAAGGCAATGTTCGATATTTAGGATTCACGGGAGGATTGTGCCCTAAC
390 TCGATTGTTTTCAAAATAAAGGCAATGTTCGATATTTAGGATCCACGGGAGGATTATGCCCTAAC
75221800 TTACT-GGTTCCAATTTTCCTCGTTGAATCTAAATAACCGAGTACCCTTCTAAAATTTAATTGTA
455 TTACTGGGTTCCAATTTTCCTCGTTGAATCTAAATAACCGAGTACCCTTCTAAAATTTAATTGTA
75221864 TGAGGTTAGAATAAAAAACCTATTCTTAAAAATTCGGGATGTTACACCCTAACTCACTGGGTGTG
520 TGAGGTTAGAATAAAAAACCTATTCTTAAAAATTCGGGATGTTACACCCTAACTCACTGGGTGTG
75221929 GCGTTGC
585 GCGTTGC
75221936 GTGATCGGAGCAAGGTCGGACTGATGGCCGGATTTAGATGGGAGGGGAAGAGTATTATTATTATT
1 GTGATCGGAGCAAGGTCGGACTGATGGCCGGATTTAGATGGGAGGGGAAGAGTATTATTATTATT
75222001 ATTATTATTATTTTATTTTATTTTATTACTTTTACTATTATTTTATATATATTTATTACCATTAT
66 ATTATTATTATTTTATTTTATTTTATTACTTTTACTATTATTTTATATATATTTATTACCATTAT
* *
75222066 TTATTTATTATTATTAGTAACATATTGTTATTATTATTATTTTTATTTTTATTATTATAATGGCA
131 TTATTTATTATTATTAGTAACATATTGTTATTATTATTA--TATATTATTATTATTATAATGGCA
75222131 CTATATTAACTAGTTTTGTACTGTTATTACATTCATCACTTCTGTTATTACTACTGTTCTTAATT
194 CTATATTAACTAGTTTTGTACTGTTATTACATTCATCACTTCTGTTATTACTACTGTTCTTAATT
75222196 TTCTTTATGCTTGCTATATTTTAGGTATTAATATATGTTATTAGGGTTATTATATTACTATTTTC
259 TTCTTTATGCTTGCTATATTTTAGGTATTAATATATGTTATTAGGGTTATTATATTACTATTTTC
75222261 ATATTGCATGTTATCATTTTTTTTAAGTTTCAGCCGCCCAAATTCATTTTATTCAAAGATTTATC
324 ATATTGCATGTTATCATTTTTTTTAAGTTTCAGCCGCCCAAATTCATTTTATTCAAAGATTTATC
75222326 CTCGATTGTTTTCAAAATAAAGGCAATGTTCGATATTTAGGATCCACGGGAGGATTATGCCCTAA
389 CTCGATTGTTTTCAAAATAAAGGCAATGTTCGATATTTAGGATCCACGGGAGGATTATGCCCTAA
*
75222391 CTTACTGGGTTCCAATTTTCCTCGTTGAATCTAAATAACCGAGTACCCTTCTCAAATTTAATTGT
454 CTTACTGGGTTCCAATTTTCCTCGTTGAATCTAAATAACCGAGTACCCTTCTAAAATTTAATTGT
*
75222456 ATGAGGTTCGAATAAAAAACCTATTCTTAAAAATTCGGGATGTTACACCCTAACTCACTGGGTGT
519 ATGAGGTTAGAATAAAAAACCTATTCTTAAAAATTCGGGATGTTACACCCTAACTCACTGGGTGT
75222521 GGCGTTGC
584 GGCGTTGC
75222529 GT
1 GT
75222531 TATATTGAGG
Statistics
Matches: 583, Mismatches: 8, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
590 169 0.29
592 118 0.20
593 296 0.51
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (591 bp):
GTGATCGGAGCAAGGTCGGACTGATGGCCGGATTTAGATGGGAGGGGAAGAGTATTATTATTATT
ATTATTATTATTTTATTTTATTTTATTACTTTTACTATTATTTTATATATATTTATTACCATTAT
TTATTTATTATTATTAGTAACATATTGTTATTATTATTATATATTATTATTATTATAATGGCACT
ATATTAACTAGTTTTGTACTGTTATTACATTCATCACTTCTGTTATTACTACTGTTCTTAATTTT
CTTTATGCTTGCTATATTTTAGGTATTAATATATGTTATTAGGGTTATTATATTACTATTTTCAT
ATTGCATGTTATCATTTTTTTTAAGTTTCAGCCGCCCAAATTCATTTTATTCAAAGATTTATCCT
CGATTGTTTTCAAAATAAAGGCAATGTTCGATATTTAGGATCCACGGGAGGATTATGCCCTAACT
TACTGGGTTCCAATTTTCCTCGTTGAATCTAAATAACCGAGTACCCTTCTAAAATTTAATTGTAT
GAGGTTAGAATAAAAAACCTATTCTTAAAAATTCGGGATGTTACACCCTAACTCACTGGGTGTGG
CGTTGC
Found at i:75226766 original size:10 final size:9
Alignment explanation
Indices: 75226746--75226788 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
75226736 CTTGAAACCT
75226746 TAAAAAAAA
1 TAAAAAAAA
75226755 TAAAAAAGAA
1 TAAAAAA-AA
75226765 TAAAAAAAA
1 TAAAAAAAA
*
75226774 CACAAAAAAA
1 TA-AAAAAAA
*
75226784 GAAAA
1 TAAAA
75226789 GAAACAGGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 13 0.43
10 17 0.57
ACGTcount: A:0.84, C:0.05, G:0.05, T:0.07
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:75226780 original size:19 final size:19
Alignment explanation
Indices: 75226746--75226794 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
75226736 CTTGAAACCT
* *
75226746 TAAAAAAAATAAAAAAGAA
1 TAAAAAAAACAAAAAAAAA
*
75226765 TAAAAAAAACACAAAAAAA
1 TAAAAAAAACAAAAAAAAA
* *
75226784 GAAAAGAAACA
1 TAAAAAAAACA
75226795 GGAGAGGCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (19 bp):
TAAAAAAAACAAAAAAAAA
Found at i:75228292 original size:176 final size:176
Alignment explanation
Indices: 75227998--75228502 Score: 690
Period size: 176 Copynumber: 2.9 Consensus size: 176
75227988 GCGACATCGG
* * *
75227998 TGAAGATACAGGTTTTGTCTTTCTGAAGTTGCAGGAAGCAGGCCGAAGATTTCAGATCTTATCTC
1 TGAAGATACAGGTATTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAGATCTTATCTC
* * * *
75228063 CATGTATCGGCTATGGTGTAGATCAAAAATGGCGAGTCTTAACTCCATGTATCGGTTATGGAGCA
66 CATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCA
*
75228128 GATTTTATCCATCAGCCTTATCTCTCTAAAGTTACAGAGAGCAGGT
131 GATTTTAACCATCAGCCTTATCTCTCTAAAGTTACAGAGAGCAGGT
* * * * *
75228174 TGAAGATACAGGTATTATCTTTCTAAAATTGCAAGAAGCAGATCGAA-ATTTACAGATCTTGTCT
1 TGAAGATACAGGTATTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTT-CAGATCTTATCT
* * *
75228238 CCATATATCGGTTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGC
65 CCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGC
* * * *
75228303 AGATTTTAGCCATCAGCCTTATTTCTCTGAAGTTGCAGAGAGCAGGT
130 AGATTTTAACCATCAGCCTTATCTCTCTAAAGTTACAGAGAGCAGGT
*
75228350 TGAAGATACAGGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTC-GAATCTTATCT
1 TGAAGATACAGGTATTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAG-ATCTTATCT
** * * * * * * *
75228414 ATATGTATTGACTATGGAGCAGATCGAAGATAGCGAGTCTCATCTCCATGTATCGGCAATGGAGC
65 CCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGC
* *
75228479 AGATTTCAACCACCAGCCTTATCT
130 AGATTTTAACCATCAGCCTTATCT
75228503 TCACTGAGCA
Statistics
Matches: 285, Mismatches: 41, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
175 5 0.02
176 276 0.97
177 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (176 bp):
TGAAGATACAGGTATTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAGATCTTATCTC
CATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCA
GATTTTAACCATCAGCCTTATCTCTCTAAAGTTACAGAGAGCAGGT
Found at i:75228546 original size:43 final size:42
Alignment explanation
Indices: 75228496--75228835 Score: 143
Period size: 43 Copynumber: 7.7 Consensus size: 42
75228486 AACCACCAGC
*
75228496 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTATATACTAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCA-GATATATACTAGAT
* * * ** *
75228539 CTTATCTTCACTGAGCATGAGTGAAGCAGATAAAATTTTGGCAAGT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGAT-ATATACTAG--A-T
* * * * * * *
75228585 CTTATCTCCA-TGTATC-GGCAATGGAGCAGATTTCAGCCACCAG-C
1 CTTATCTTCACTG-AGCAGG-AGTGGAGCAGATAT-A--TACTAGAT
* * *
75228629 CTTATCTTCATTGAGCAGGAGTGGAGCAGGCTAAATACTAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCA-GATATATACTAGAT
* ** * ** *
75228672 CTTATCTTCGCTGAGCAGGAGCAGAGCAGATCAAATTTTGGTGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGAT-ATATACT--AG-AT
* * * * * **
75228718 CTTATCTCCA-TGTATC-GGCAATGGAGTAGATTTCAGCCATCAG-T
1 CTTATCTTCACTG-AGCAGG-AGTGGAGCAGATAT-ATAC-T-AGAT
*
75228762 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTATATACTAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCA-GATATATACTAGAT
* *
75228805 CTTATCTTCGCTGAGCAGGAGCGGAGCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGAT
75228836 CAAATTTTGA
Statistics
Matches: 210, Mismatches: 62, Indels: 51
0.65 0.19 0.16
Matches are distributed among these distances:
42 12 0.06
43 88 0.42
44 41 0.20
45 22 0.10
46 45 0.21
47 1 0.00
48 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (42 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGATATATACTAGAT
Found at i:75228592 original size:133 final size:131
Alignment explanation
Indices: 75228455--75228976 Score: 749
Period size: 133 Copynumber: 3.9 Consensus size: 131
75228445 AGCGAGTCTC
75228455 ATCTCCATGTATCGGCAATGGAGCAGATTTCAACCACCAGCCTTATCTTCACTGAGCAGGAGTGG
1 ATCTCCATGTATCGGCAATGGAGCAGATTTCAACCACCAGCCTTATCTTCACTGAGCAGGAGTGG
* *
75228520 AGCAGGCTATATACTAGATCTTATCTTCACTGAGCATGAGTGAAGCAGATAAAATTTTGGCAAGT
66 AGCAGGCTATATACTAGATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGG-AA-T
75228585 CTT
129 CTT
* *
75228588 ATCTCCATGTATCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCATTGAGCAGGAGTGG
1 ATCTCCATGTATCGGCAATGGAGCAGATTTCAACCACCAGCCTTATCTTCACTGAGCAGGAGTGG
* * *
75228653 AGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGGAG-CAGAGCAGATCAAATTTTGGTGAA
66 AGCAGGCTATATACTAGATCTTATCTTCACTGAGCAGGAGTGA-AGCAGATCAAATTTT-G-GAA
75228717 TCTT
128 TCTT
* * * *
75228721 ATCTCCATGTATCGGCAATGGAGTAGATTTCAGCCATCAGTCTTATCTTCACTGAGCAGGAGTGG
1 ATCTCCATGTATCGGCAATGGAGCAGATTTCAACCACCAGCCTTATCTTCACTGAGCAGGAGTGG
* * *
75228786 AGCAGGCTATATACTAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGATGAAT
66 AGCAGGCTATATACTAGATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTG--GAAT
75228851 CTT
129 CTT
* * * * * *
75228854 ATCTCCATGTATCGGCAATAGAACAGGTTCCAATCATCAGCCTTATCTTCACTGAGCAGGAGTGG
1 ATCTCCATGTATCGGCAATGGAGCAGATTTCAACCACCAGCCTTATCTTCACTGAGCAGGAGTGG
* * *
75228919 AGCAGGCTAAACATACTAGATCTTATCTTTACTGAGCAGGAGTAAAGCAGATCAAATT
66 AGCAGGCT--ATATACTAGATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATT
75228977 ACAGCAGATC
Statistics
Matches: 354, Mismatches: 28, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
132 2 0.01
133 306 0.86
134 3 0.01
135 43 0.12
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (131 bp):
ATCTCCATGTATCGGCAATGGAGCAGATTTCAACCACCAGCCTTATCTTCACTGAGCAGGAGTGG
AGCAGGCTATATACTAGATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGAATCT
T
Found at i:75229233 original size:19 final size:19
Alignment explanation
Indices: 75229209--75229248 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
75229199 GTAGCACCCA
75229209 CTAAACTGA-CCACTAACTC
1 CTAAACT-ACCCACTAACTC
75229228 CTAAACTACCCCACTAACTC
1 CTAAACTA-CCCACTAACTC
75229248 C
1 C
75229249 ATCACCCCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.05
19 7 0.37
20 11 0.58
ACGTcount: A:0.35, C:0.42, G:0.03, T:0.20
Consensus pattern (19 bp):
CTAAACTACCCACTAACTC
Found at i:75229257 original size:17 final size:17
Alignment explanation
Indices: 75229235--75229291 Score: 68
Period size: 17 Copynumber: 3.6 Consensus size: 17
75229225 CTCCTAAACT
75229235 ACCCCACTAACTCCATC
1 ACCCCACTAACTCCATC
*
75229252 ACCCCACTAA--GC--C
1 ACCCCACTAACTCCATC
75229265 ACCCCACTAACTCCATC
1 ACCCCACTAACTCCATC
*
75229282 ACCCTACTAA
1 ACCCCACTAA
75229292 GCTACCCCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
13 11 0.33
15 2 0.06
17 20 0.61
ACGTcount: A:0.32, C:0.51, G:0.02, T:0.16
Consensus pattern (17 bp):
ACCCCACTAACTCCATC
Found at i:75229269 original size:13 final size:13
Alignment explanation
Indices: 75229251--75229304 Score: 54
Period size: 13 Copynumber: 3.8 Consensus size: 13
75229241 CTAACTCCAT
75229251 CACCCCACTAAGC
1 CACCCCACTAAGC
*
75229264 CACCCCACTAACTC
1 CACCCCACTAA-GC
75229278 CATCACCCTACTAAGC
1 CA-C-CCC-ACTAAGC
*
75229294 TACCCCACTAA
1 CACCCCACTAA
75229305 CTCTATTATC
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
13 16 0.47
14 6 0.18
15 2 0.06
16 5 0.15
17 5 0.15
ACGTcount: A:0.31, C:0.50, G:0.04, T:0.15
Consensus pattern (13 bp):
CACCCCACTAAGC
Found at i:75229319 original size:30 final size:30
Alignment explanation
Indices: 75229228--75229307 Score: 133
Period size: 30 Copynumber: 2.7 Consensus size: 30
75229218 CCACTAACTC
* *
75229228 CTAAACTACCCCACTAACTCCATCACCCCA
1 CTAAGCTACCCCACTAACTCCATCACCCTA
*
75229258 CTAAGCCACCCCACTAACTCCATCACCCTA
1 CTAAGCTACCCCACTAACTCCATCACCCTA
75229288 CTAAGCTACCCCACTAACTC
1 CTAAGCTACCCCACTAACTC
75229308 TATTATCCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.31, C:0.49, G:0.03, T:0.17
Consensus pattern (30 bp):
CTAAGCTACCCCACTAACTCCATCACCCTA
Found at i:75229681 original size:3 final size:3
Alignment explanation
Indices: 75229673--75229797 Score: 73
Period size: 3 Copynumber: 42.0 Consensus size: 3
75229663 AGGGGAAGAG
*
75229673 TAT TAT TAT TAT TAT TAT TA- TAT T-T TAT TACT T-T TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
* * * * *
75229716 T-T TA- TAT ATATT TAT TAC CAT TATT TATT TAT TAT TAT TAG TAA CA-
1 TAT TAT TAT -TA-T TAT TAT TAT TA-T TA-T TAT TAT TAT TAT TAT TAT
* * * *
75229762 TAT TGT TAT TTT TAT TAT TTT TAT TTT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
75229798 AATGGCACTA
Statistics
Matches: 94, Mismatches: 18, Indels: 20
0.71 0.14 0.15
Matches are distributed among these distances:
2 11 0.12
3 69 0.73
4 13 0.14
5 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:75241240 original size:33 final size:35
Alignment explanation
Indices: 75241184--75241249 Score: 84
Period size: 33 Copynumber: 1.9 Consensus size: 35
75241174 GGTGCTATAA
* *
75241184 CCCAGTTATGGTCTTTTCATTAAA-A-TGCCATAG
1 CCCAGCTATGGTCTTTACATTAAACATTGCCATAG
75241217 CCCAGCTATGGTC-TTACATTTAAACATTGCCAT
1 CCCAGCTATGGTCTTTACA-TTAAACATTGCCAT
75241250 GATCCAACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 4 0.14
33 17 0.61
34 1 0.04
35 6 0.21
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (35 bp):
CCCAGCTATGGTCTTTACATTAAACATTGCCATAG
Found at i:75246641 original size:16 final size:16
Alignment explanation
Indices: 75246620--75246650 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75246610 TTCACTATTA
*
75246620 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
75246636 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
75246651 GCATGCATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:75248721 original size:12 final size:14
Alignment explanation
Indices: 75248695--75248734 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
75248685 ATCCATGAGC
75248695 ATCTATTTCCTTTAT
1 ATCTATTT-CTTTAT
75248710 -TCTA-TTCTTTAT
1 ATCTATTTCTTTAT
75248722 ATCTATTTCTTTA
1 ATCTATTTCTTTA
75248735 ACATTGTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 6 0.26
13 6 0.26
14 11 0.48
ACGTcount: A:0.20, C:0.17, G:0.00, T:0.62
Consensus pattern (14 bp):
ATCTATTTCTTTAT
Found at i:75253098 original size:21 final size:22
Alignment explanation
Indices: 75253058--75253098 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
75253048 TACAACTTGG
75253058 CTTCTACTGACACAAAGGTATA
1 CTTCTACTGACACAAAGGTATA
*
75253080 CTTCTACTGATAC-AAGGTA
1 CTTCTACTGACACAAAGGTA
75253099 GTTAGTGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (22 bp):
CTTCTACTGACACAAAGGTATA
Found at i:75256772 original size:33 final size:32
Alignment explanation
Indices: 75256705--75256785 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 32
75256695 AATTTTATTG
* *
75256705 AATATAAACTTCTAAATTTTGAGGAAAAACCA
1 AATATAAACTTCCAAATTTTGAGGAAAAAACA
*
75256737 AATATAAACTTCC-AATTTTTATGGGAAAAAACA
1 AATATAAACTTCCAAATTTTGA--GGAAAAAACA
*
75256770 AATACAAACTTCCAAA
1 AATATAAACTTCCAAA
75256786 AGGAATTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 7 0.17
32 12 0.29
33 21 0.50
34 2 0.05
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.27
Consensus pattern (32 bp):
AATATAAACTTCCAAATTTTGAGGAAAAAACA
Found at i:75260365 original size:15 final size:16
Alignment explanation
Indices: 75260337--75260366 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75260327 AGAGAGAGAG
75260337 AAATAATGTAAAAATA
1 AAATAATGTAAAAATA
75260353 AAATAAT-TAAAAAT
1 AAATAATGTAAAAAT
75260367 TATTTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
AAATAATGTAAAAATA
Found at i:75261076 original size:49 final size:49
Alignment explanation
Indices: 75261019--75261120 Score: 186
Period size: 49 Copynumber: 2.1 Consensus size: 49
75261009 CAATTTTAAA
*
75261019 ATTTGAAAGAACAATAACAAATTTAAGCGTTGACTACTCTCTTACTTTT
1 ATTTGAAAGAACAATAACAAATTTAAGCGTTGACTACTCTCGTACTTTT
*
75261068 ATTTGAAAGAACAATAACAAATTTAAGCGTTGACTACTCTGGTACTTTT
1 ATTTGAAAGAACAATAACAAATTTAAGCGTTGACTACTCTCGTACTTTT
75261117 ATTT
1 ATTT
75261121 TTCATACTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (49 bp):
ATTTGAAAGAACAATAACAAATTTAAGCGTTGACTACTCTCGTACTTTT
Found at i:75261389 original size:13 final size:13
Alignment explanation
Indices: 75261371--75261396 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75261361 AACTACAATA
75261371 TGTCATAATAGAT
1 TGTCATAATAGAT
75261384 TGTCATAATAGAT
1 TGTCATAATAGAT
75261397 AATGAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTCATAATAGAT
Found at i:75263051 original size:14 final size:14
Alignment explanation
Indices: 75263034--75263066 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
75263024 CTTTGTATAT
75263034 AGATGTATGTATGC
1 AGATGTATGTATGC
75263048 AGATGTATGTATGC
1 AGATGTATGTATGC
*
75263062 GGATG
1 AGATG
75263067 CCCCAACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.27, C:0.06, G:0.33, T:0.33
Consensus pattern (14 bp):
AGATGTATGTATGC
Found at i:75270022 original size:104 final size:103
Alignment explanation
Indices: 75269763--75270027 Score: 404
Period size: 103 Copynumber: 2.6 Consensus size: 103
75269753 AACCGTTATT
* * * *
75269763 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
75269828 ATCAGCACATAGCAACCCCCTTTTTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTACATTTCAAAGATAC
** *
75269866 AATGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
75269931 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATAC
* **
75269970 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
75270028 TTATGTACAA
Statistics
Matches: 145, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
103 81 0.56
104 64 0.44
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (103 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTACATTTCAAAGATAC
Found at i:75270389 original size:30 final size:29
Alignment explanation
Indices: 75270355--75270419 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
75270345 TAATCCACCA
75270355 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
75270385 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
75270415 CCCAA
1 CCCAA
75270420 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:75270393 original size:31 final size:30
Alignment explanation
Indices: 75270362--75270419 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
75270352 CCACCCAACT
75270362 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
75270392 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
75270420 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:75277434 original size:103 final size:104
Alignment explanation
Indices: 75277255--75277519 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
75277245 AACCGTTATT
* * * *
75277255 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
75277320 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
75277358 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
75277422 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
75277462 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
75277520 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:75277881 original size:30 final size:29
Alignment explanation
Indices: 75277847--75277911 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
75277837 TAATCCACCA
75277847 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
75277877 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
75277907 CCCAA
1 CCCAA
75277912 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:75277885 original size:31 final size:30
Alignment explanation
Indices: 75277854--75277911 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
75277844 CCACCCAACT
75277854 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
75277884 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
75277912 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:75279299 original size:22 final size:22
Alignment explanation
Indices: 75279274--75279354 Score: 58
Period size: 22 Copynumber: 3.7 Consensus size: 22
75279264 GCTGAATAGT
75279274 AGGCACCAAAGTGCAAATCAGA
1 AGGCACCAAAGTGCAAATCAGA
* * * *
75279296 AGGCACAAAAATACAAAGT-AGT
1 AGGCACCAAAGTGCAAA-TCAGA
* * *
75279318 AGGCACTATAGTGCAAACCA-A
1 AGGCACCAAAGTGCAAATCAGA
*
75279339 TAGGCACCGAAGTGCA
1 -AGGCACCAAAGTGCA
75279355 GAACAATAGG
Statistics
Matches: 43, Mismatches: 13, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
22 42 0.98
23 1 0.02
ACGTcount: A:0.44, C:0.21, G:0.22, T:0.12
Consensus pattern (22 bp):
AGGCACCAAAGTGCAAATCAGA
Found at i:75279361 original size:22 final size:22
Alignment explanation
Indices: 75279327--75279378 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
75279317 TAGGCACTAT
75279327 AGTGCAAACCAATAGGCACCGA
1 AGTGCAAACCAATAGGCACCGA
*
75279349 AGTGCAGAA-CAATAGGCACCGT
1 AGTGCA-AACCAATAGGCACCGA
*
75279371 AGTACAAA
1 AGTGCAAA
75279379 TCTCGTACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 2 0.07
22 23 0.85
23 2 0.07
ACGTcount: A:0.42, C:0.23, G:0.23, T:0.12
Consensus pattern (22 bp):
AGTGCAAACCAATAGGCACCGA
Found at i:75294798 original size:44 final size:44
Alignment explanation
Indices: 75294735--75294836 Score: 195
Period size: 44 Copynumber: 2.3 Consensus size: 44
75294725 TCTCTCTGCC
*
75294735 AATGTAGCAAAATCTTGAATTTCAAGAATTTCGATCAGTAGCTT
1 AATGTAGCAAACTCTTGAATTTCAAGAATTTCGATCAGTAGCTT
75294779 AATGTAGCAAACTCTTGAATTTCAAGAATTTCGATCAGTAGCTT
1 AATGTAGCAAACTCTTGAATTTCAAGAATTTCGATCAGTAGCTT
75294823 AATGTAGCAAACTC
1 AATGTAGCAAACTC
75294837 AGATACTGAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (44 bp):
AATGTAGCAAACTCTTGAATTTCAAGAATTTCGATCAGTAGCTT
Found at i:75303475 original size:15 final size:15
Alignment explanation
Indices: 75303440--75303469 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
75303430 AAGAATTAGC
*
75303440 ACAAAATATAAGAAT
1 ACAAAATATAAAAAT
75303455 ACAAAATATAAAAAT
1 ACAAAATATAAAAAT
75303470 TTAAAAGTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (15 bp):
ACAAAATATAAAAAT
Found at i:75304909 original size:27 final size:27
Alignment explanation
Indices: 75304878--75304936 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
75304868 TTCTAGTCTC
75304878 GTTCGTCTCACCATATTACTATATCAG
1 GTTCGTCTCACCATATTACTATATCAG
75304905 GTTCGTCTCACCATATTACTATATCAG
1 GTTCGTCTCACCATATTACTATATCAG
75304932 GTTCG
1 GTTCG
75304937 CCAAAACACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (27 bp):
GTTCGTCTCACCATATTACTATATCAG
Found at i:75305125 original size:28 final size:28
Alignment explanation
Indices: 75305085--75305158 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
75305075 TTTAGAGATA
* *
75305085 GCCATAAAGGCTTCCTTATCCAGAAATT
1 GCCACAAAGGCTTCCTTATCCAAAAATT
* *
75305113 GCCACAATGGCTTCATTATCCAAAAATT
1 GCCACAAAGGCTTCCTTATCCAAAAATT
*
75305141 TCCACAAAGGCTTTCCTT
1 GCCACAAAGGC-TTCCTT
75305159 TTAGAGCCTC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 33 0.87
29 5 0.13
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (28 bp):
GCCACAAAGGCTTCCTTATCCAAAAATT
Found at i:75305422 original size:53 final size:52
Alignment explanation
Indices: 75305325--75305431 Score: 126
Period size: 53 Copynumber: 2.0 Consensus size: 52
75305315 ATTTCTTAAA
* *
75305325 TTTTTTCATACGATGCCATAGCCCACCAGTTATAGTCTAGCACGATATGGTC
1 TTTTTTCATACGATGCCATAACCCACCAGTTATAGTCTAGCACGATATGATC
* * * * *
75305377 TTTTTTCCATATGATGTCATAACCCATCATTTATGGTCTTA-CACGATATGATC
1 TTTTTT-CATACGATGCCATAACCCACCAGTTATAGTC-TAGCACGATATGATC
75305430 TT
1 TT
75305432 ATTTAGTGCC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
52 6 0.13
53 38 0.83
54 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.38
Consensus pattern (52 bp):
TTTTTTCATACGATGCCATAACCCACCAGTTATAGTCTAGCACGATATGATC
Found at i:75306125 original size:16 final size:15
Alignment explanation
Indices: 75306100--75306147 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
75306090 CTATTTTAAG
75306100 TTTATTTTAATTTTA
1 TTTATTTTAATTTTA
75306115 TTTATTTTTAATTATTA
1 TTTA-TTTTAATT-TTA
75306132 -TTATTTTAGATTTTA
1 TTTATTTTA-ATTTTA
75306147 T
1 T
75306148 ATTAATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 14 0.48
17 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTTAATTTTA
Found at i:75309847 original size:46 final size:46
Alignment explanation
Indices: 75309797--75309969 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
75309787 TGGTTGAGCA
75309797 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75309843 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75309888 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75309936 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75309970 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75309953 original size:93 final size:93
Alignment explanation
Indices: 75309794--75309964 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75309784 GGATGGTTGA
* *
75309794 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75309859 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75309887 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75309952 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75309965 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75312957 original size:15 final size:15
Alignment explanation
Indices: 75312937--75313005 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
75312927 GTATCTTGGG
75312937 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
75312952 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
75312967 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
75312982 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
75312997 TTTCTTTAT
1 TTTCTTTAT
75313006 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:75313006 original size:30 final size:30
Alignment explanation
Indices: 75312928--75313015 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
75312918 CATAGTATCG
* * * *
75312928 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
75312958 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
75312988 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
75313016 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:75328072 original size:63 final size:63
Alignment explanation
Indices: 75327990--75328129 Score: 172
Period size: 63 Copynumber: 2.2 Consensus size: 63
75327980 CCTATTATGC
* * * * * * *
75327990 AACAATGAGTCACACGACCTGAACATGCACCCATGTCTCTTGCCTATGTGTCTTTAATTCGTG
1 AACAGTGAGTCACAAGACCTGAACACGCACCCATGTCCCTGGCCTATGTGTCTCTAATTCATG
* ** *
75328053 AACAGTGAGTCACAAGACCTGGACACGTGCCCGTGTCCCTGGCCTATGTGTCTCTAATTCATG
1 AACAGTGAGTCACAAGACCTGAACACGCACCCATGTCCCTGGCCTATGTGTCTCTAATTCATG
*
75328116 AATAGTGAGTCACA
1 AACAGTGAGTCACA
75328130 CGGCCTTGAC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (63 bp):
AACAGTGAGTCACAAGACCTGAACACGCACCCATGTCCCTGGCCTATGTGTCTCTAATTCATG
Found at i:75328802 original size:25 final size:24
Alignment explanation
Indices: 75328758--75328808 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
75328748 CAATGCAATC
75328758 AAAAAGAAAAAGGAAAAAAAGAAAA
1 AAAAAGAAAAAGGAAAAAAA-AAAA
* **
75328783 AAAAAGAAACAGGATGAAAAAAAA
1 AAAAAGAAAAAGGAAAAAAAAAAA
75328807 AA
1 AA
75328809 GAGAAAGAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (24 bp):
AAAAAGAAAAAGGAAAAAAAAAAA
Found at i:75331300 original size:21 final size:21
Alignment explanation
Indices: 75331277--75331317 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
75331267 TCTTTCCTTC
75331277 TTTCTTTCTCTATTCTTATTCT
1 TTTCTTTCTCTATT-TTATTCT
* *
75331299 TTTGTTTCTTTATTTTATT
1 TTTCTTTCTCTATTTTATT
75331318 TATTTTATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.10, C:0.15, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTCTTTCTCTATTTTATTCT
Found at i:75331323 original size:22 final size:22
Alignment explanation
Indices: 75331281--75331323 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
75331271 TCCTTCTTTC
*
75331281 TTTCTCTATTCTTATTCTTTTG
1 TTTCTCTATTCTTATTATTTTG
*
75331303 TTTCTTTATT-TTATTTATTTT
1 TTTCTCTATTCTTA-TTATTTT
75331324 ATTCCTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.12, C:0.12, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTCTCTATTCTTATTATTTTG
Found at i:75331365 original size:15 final size:17
Alignment explanation
Indices: 75331338--75331385 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 17
75331328 CTTTTATGTT
75331338 TTAAT-TAATTAATA-A
1 TTAATATAATTAATATA
75331353 TTAATATAA-TAATATA
1 TTAATATAATTAATATA
75331369 TT-ATATATATTAA-ATA
1 TTAATATA-ATTAATATA
75331385 T
1 T
75331386 CTTATACCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 15 0.52
16 11 0.38
17 3 0.10
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAATATAATTAATATA
Found at i:75331376 original size:9 final size:8
Alignment explanation
Indices: 75331345--75331385 Score: 50
Period size: 7 Copynumber: 5.2 Consensus size: 8
75331335 GTTTTAATTA
75331345 ATTAATA-
1 ATTAATAT
75331352 ATTAATAT
1 ATTAATAT
*
75331360 AATAATAT
1 ATTAATAT
75331368 ATTATATAT
1 ATTA-ATAT
75331377 ATTAA-AT
1 ATTAATAT
75331384 AT
1 AT
75331386 CTTATACCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 11 0.37
8 11 0.37
9 8 0.27
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
ATTAATAT
Found at i:75353414 original size:13 final size:12
Alignment explanation
Indices: 75353396--75353458 Score: 56
Period size: 13 Copynumber: 5.1 Consensus size: 12
75353386 TTCTTCTTCC
75353396 CTTATTTCTTTTT
1 CTTATTT-TTTTT
75353409 CTTATTTTTTTCT
1 CTTATTTTTTT-T
*
75353422 CTCATTTTCTTTT
1 CTTATTTT-TTTT
*
75353435 CTT-TTCTTTTT
1 CTTATTTTTTTT
* *
75353446 CTTCTTTTCTTT
1 CTTATTTTTTTT
75353458 C
1 C
75353459 GTTCCTTGTG
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
11 7 0.17
12 14 0.33
13 18 0.43
14 3 0.07
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.75
Consensus pattern (12 bp):
CTTATTTTTTTT
Found at i:75353428 original size:26 final size:25
Alignment explanation
Indices: 75353399--75353457 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
75353389 TTCTTCCCTT
75353399 ATTTCTTTTTCTTATT-TTTTTCTCTC
1 ATTTCTTTTTCTT-TTCTTTTTCT-TC
75353425 ATTT-TCTTTTCTTTTCTTTTTCTTC
1 ATTTCT-TTTTCTTTTCTTTTTCTTC
*
75353450 TTTTCTTT
1 ATTTCTTT
75353458 CGTTCCTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 10 0.34
26 19 0.66
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (25 bp):
ATTTCTTTTTCTTTTCTTTTTCTTC
Found at i:75353973 original size:14 final size:12
Alignment explanation
Indices: 75353944--75353973 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
75353934 GCCACACGGT
75353944 TGTGTGGTAGGC
1 TGTGTGGTAGGC
75353956 TGTGTGGTAGGC
1 TGTGTGGTAGGC
*
75353968 CGTGTG
1 TGTGTG
75353974 AGCCACACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.10, G:0.50, T:0.33
Consensus pattern (12 bp):
TGTGTGGTAGGC
Found at i:75363209 original size:96 final size:96
Alignment explanation
Indices: 75363089--75363273 Score: 264
Period size: 96 Copynumber: 1.9 Consensus size: 96
75363079 CTTACTTTCT
* * *
75363089 TCTCTAGTTGGATATTTAAATGGACAT-TGAAGACCCTTATGATCTTTTGAACTATACCAATAAC
1 TCTCTAGTTAGATATTTAAATGGACATCAGAA-ACCCTTATGATCTTTTGAACTACACCAATAAC
* *
75363153 ATTGCACAAAAGGTGATAGCTCAATCGTATTC
65 ATTGCACAAAAGGTGAGAGATCAATCGTATTC
* * *
75363185 TCTCTATTTAGATATTTAATTGGACGTCAGAAACCCTTATGATCTTTTGAACTACACCAATAACA
1 TCTCTAGTTAGATATTTAAATGGACATCAGAAACCCTTATGATCTTTTGAACTACACCAATAACA
* *
75363250 TTTCACAACAGGTGAGAGATCAAT
66 TTGCACAAAAGGTGAGAGATCAAT
75363274 TGTACTCCTC
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 75 0.96
97 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (96 bp):
TCTCTAGTTAGATATTTAAATGGACATCAGAAACCCTTATGATCTTTTGAACTACACCAATAACA
TTGCACAAAAGGTGAGAGATCAATCGTATTC
Found at i:75370470 original size:46 final size:46
Alignment explanation
Indices: 75370410--75370683 Score: 415
Period size: 46 Copynumber: 6.0 Consensus size: 46
75370400 TTTGACATGA
* * * * * * *
75370410 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
*** * *
75370456 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
75370502 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
75370548 TGCCATGGTATCCTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
75370594 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
75370640 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
75370684 AGAGCACACT
Statistics
Matches: 213, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 209 0.98
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:75380960 original size:17 final size:18
Alignment explanation
Indices: 75380938--75380987 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
75380928 CCACATAATA
75380938 TTTTTTAATTTTTTTCT-
1 TTTTTTAATTTTTTTCTG
* *
75380955 TTTTTTCATATTTTTCTG
1 TTTTTTAATTTTTTTCTG
*
75380973 TTTTTGTACTTTTTT
1 TTTTT-TAATTTTTT
75380988 GGTCACTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 15 0.58
18 5 0.19
19 6 0.23
ACGTcount: A:0.10, C:0.08, G:0.04, T:0.78
Consensus pattern (18 bp):
TTTTTTAATTTTTTTCTG
Found at i:75381396 original size:45 final size:44
Alignment explanation
Indices: 75381342--75381442 Score: 130
Period size: 45 Copynumber: 2.2 Consensus size: 44
75381332 AGATAGATTA
* * *
75381342 AAAAAATTAAAGAATAATTAAGATAAAAAAAGCAATTGAATAAAT
1 AAAATATTAAAGAAAAAATAAGAT-AAAAAAGCAATTGAATAAAT
* *
75381387 AAAATATTAAAATAAAAAATGAGATAAAAAAGCAATTGAATAAAT
1 AAAATATT-AAAGAAAAAATAAGATAAAAAAGCAATTGAATAAAT
*
75381432 CAAATATTAAA
1 AAAATATTAAA
75381443 ATTATAAAGG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
44 3 0.06
45 34 0.69
46 12 0.24
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.23
Consensus pattern (44 bp):
AAAATATTAAAGAAAAAATAAGATAAAAAAGCAATTGAATAAAT
Found at i:75383222 original size:27 final size:30
Alignment explanation
Indices: 75383165--75383222 Score: 68
Period size: 31 Copynumber: 2.0 Consensus size: 30
75383155 GGATAATAAC
**
75383165 CACATACATATTTATATTATATGGCCGAATA
1 CACATACATA-TTATATTATATGGCAAAATA
75383196 CACATACATA-TATA-TATA-GGCAAAATA
1 CACATACATATTATATTATATGGCAAAATA
75383223 TCTTTATCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 7 0.28
28 4 0.16
29 4 0.16
31 10 0.40
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.31
Consensus pattern (30 bp):
CACATACATATTATATTATATGGCAAAATA
Found at i:75390631 original size:99 final size:96
Alignment explanation
Indices: 75390514--75390692 Score: 261
Period size: 96 Copynumber: 1.8 Consensus size: 96
75390504 TATGAGATGT
75390514 GTCAGTGTAAGACCATGTCTAAGACATGGCATCGACACAGAGATGTGA-GAGCCAGTGTAAGACC
1 GTCAGTGTAAGACCATGTCTAAGACATGGCATCG--AC-GAGATG-GATGAGCCAGTGTAAGACC
*
75390578 ATGTTTGGGACATGGCATCAGCCTCAATTTCGATA
62 ATGTTTGAGACATGGCATCAGCCTCAATTTCGATA
** ** *
75390613 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCTAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTAAGACATGGCATCGACGAGATGGATGAGCCAGTGTAAGACCATGT
75390678 TTGAGACATGGCATC
66 TTGAGACATGGCATC
75390693 GATATTACAC
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
95 2 0.03
96 37 0.51
97 2 0.03
99 32 0.44
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (96 bp):
GTCAGTGTAAGACCATGTCTAAGACATGGCATCGACGAGATGGATGAGCCAGTGTAAGACCATGT
TTGAGACATGGCATCAGCCTCAATTTCGATA
Found at i:75390636 original size:49 final size:50
Alignment explanation
Indices: 75390380--75390694 Score: 163
Period size: 47 Copynumber: 6.6 Consensus size: 50
75390370 TTTATGCGCT
* * * *
75390380 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACA-TTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACACAGATGTGAGAGTC
* * * * *** *
75390426 AGTGTAATACTATGTCTGGGACATGACAT-GGCATTGAGA--CGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACACAGATGTGAGAGTC
* * **
75390472 TATTGTAAGA-CATGTCTGGGACA-CGCATCGACTA-TGAGATGT----GTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGAC-ACACAGATGTGAGAGTC
** * *
75390517 AGTGTAAGACCATGTCTAAGACATGGCATCGACACAGAGATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACACAGATGTGAGAGTC
* * * *
75390567 AGTGTAAGACCATGTTTGGGACATGGCATC-AGC-CTCA-ATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CACACAGATGT-GAGAGTC
**
75390616 AGTGTAAGACCATGTCTGGGACATGGCATCG--AC-TTGATG-GATGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACACAGATGTGA-GAGTC
* *
75390662 TAGTGTAAGACCATGTTTGAGACATGGCATCGA
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGA
75390695 TATTACACCC
Statistics
Matches: 208, Mismatches: 36, Indels: 48
0.71 0.12 0.16
Matches are distributed among these distances:
44 9 0.04
45 16 0.08
46 46 0.22
47 60 0.29
48 10 0.05
49 37 0.18
50 30 0.14
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACACACAGATGTGAGAGTC
Found at i:75394185 original size:19 final size:18
Alignment explanation
Indices: 75394157--75394197 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
75394147 AATTCACATG
* *
75394157 AATTAACATTGAACAATT
1 AATTAACATTCAACAACT
75394175 AATTGAACATTCAACAACT
1 AATT-AACATTCAACAACT
75394194 AATT
1 AATT
75394198 TCTTATTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.32
Consensus pattern (18 bp):
AATTAACATTCAACAACT
Found at i:75398691 original size:2 final size:2
Alignment explanation
Indices: 75398686--75398716 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
75398676 GTCATTGCTG
75398686 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
75398717 AGATATATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:75402756 original size:30 final size:30
Alignment explanation
Indices: 75402687--75402756 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
75402677 TGATTTATTT
*
75402687 ATAATTTTAAAAAATATATAAAAATACATA
1 ATAAATTTAAAAAATATATAAAAATACATA
* *
75402717 A-ATATTTAAAAGTAATA-ATAATAATA-ATA
1 ATAAATTTAAAA--AATATATAAAAATACATA
75402746 ATAAATTTAAA
1 ATAAATTTAAA
75402757 TTTTATATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
29 12 0.36
30 17 0.52
31 4 0.12
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (30 bp):
ATAAATTTAAAAAATATATAAAAATACATA
Found at i:75402770 original size:6 final size:6
Alignment explanation
Indices: 75402761--75402810 Score: 57
Period size: 6 Copynumber: 8.2 Consensus size: 6
75402751 TTTAAATTTT
**
75402761 ATATTA ATATTA ATATTAA ATAAAA ATAATT- ATATTA ATATTA ATATTA
1 ATATTA ATATTA ATATT-A ATATTA AT-ATTA ATATTA ATATTA ATATTA
75402810 A
1 A
75402811 ATAAATAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
5 3 0.08
6 29 0.78
7 5 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (6 bp):
ATATTA
Found at i:75404263 original size:19 final size:20
Alignment explanation
Indices: 75404227--75404279 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
75404217 CAAAAAATAA
*
75404227 AAAAAATCAAAATAATTT-T
1 AAAAATTCAAAATAATTTAT
75404246 CAAAAATTCAAAAT-ATTTAT
1 -AAAAATTCAAAATAATTTAT
75404266 AAAAATTCTAAAAT
1 AAAAATTC-AAAAT
75404280 TTATATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTAT
Found at i:75404270 original size:20 final size:20
Alignment explanation
Indices: 75404226--75404284 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 20
75404216 ACAAAAAATA
*
75404226 AAAAAAATCAAAATAATTT-T
1 AAAAAATTCAAAAT-ATTTAT
*
75404246 CAAAAATTCAAAATATTTAT
1 AAAAAATTCAAAATATTTAT
*
75404266 -AAAAATTCTAAA-ATTTAT
1 AAAAAATTCAAAATATTTAT
75404284 A
1 A
75404285 TTTTTTTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 6 0.18
19 15 0.44
20 13 0.38
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAAATTCAAAATATTTAT
Found at i:75404327 original size:21 final size:19
Alignment explanation
Indices: 75404303--75404349 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
75404293 AGAAATTATG
*
75404303 AAAAATTTTAAATTTTTTTCT
1 AAAAATTAT-AATTTTTTT-T
*
75404324 AAAAAATATAATTTTTTTT
1 AAAAATTATAATTTTTTTT
75404343 AAAAATT
1 AAAAATT
75404350 CATTATTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 7 0.30
20 9 0.39
21 7 0.30
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
AAAAATTATAATTTTTTTT
Found at i:75404792 original size:42 final size:42
Alignment explanation
Indices: 75404629--75404789 Score: 252
Period size: 42 Copynumber: 3.8 Consensus size: 42
75404619 GTTTACAAAC
* *
75404629 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
75404671 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* * *
75404713 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTA-AGG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA-A
*
75404755 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
75404790 TTTTTTTTCT
Statistics
Matches: 111, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
41 1 0.01
42 110 0.99
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
Found at i:75404821 original size:43 final size:41
Alignment explanation
Indices: 75404631--75404884 Score: 215
Period size: 42 Copynumber: 6.1 Consensus size: 41
75404621 TTACAAACAA
* * **** *
75404631 AAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAA
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTAC
* **** *
75404673 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAA
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTAC
***
75404715 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTAAGGGA-
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTT--TTTAC
* *
75404757 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTAC
* * *
75404799 TAATCGCCGCTAAAGAACATGTTCTTTAGTGGC-ATTTTTAC
1 -AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTAC
* * *
75404840 AAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTTTTATAC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTAC
75404882 AAA
1 AAA
75404885 AACGCCACTA
Statistics
Matches: 185, Mismatches: 20, Indels: 14
0.84 0.09 0.06
Matches are distributed among these distances:
40 30 0.16
41 8 0.04
42 113 0.61
43 34 0.18
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (41 bp):
AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTAC
Found at i:75404967 original size:14 final size:14
Alignment explanation
Indices: 75404944--75404977 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
75404934 GCCCTCCTGT
*
75404944 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
75404958 AGCAACATTTCAAA
1 AGCAACATTTCAAA
75404972 AGCAAC
1 AGCAAC
75404978 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:75405269 original size:21 final size:21
Alignment explanation
Indices: 75405201--75405271 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
75405191 TTTTGCTCTG
* *
75405201 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
75405222 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
75405243 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
75405264 CTCTGCTT
1 CTCTGCTT
75405272 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:75410745 original size:18 final size:18
Alignment explanation
Indices: 75410722--75410886 Score: 69
Period size: 18 Copynumber: 9.5 Consensus size: 18
75410712 AATTGCAATG
75410722 GTAAGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
75410740 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
75410758 GTAAGTTAAATGTAAG-T-T
1 GTAAGTT--ATGTAAGTTAT
*
75410776 GTAAGTTAT-TATGTATTAT
1 GTAAGTTATGTAAG--TTAT
75410795 GTAAG-T-TGTAAGTTAAAT
1 GTAAGTTATGTAAGTT--AT
*
75410813 GT-A-TTGTGTAAG-T-T
1 GTAAGTTATGTAAGTTAT
75410827 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
75410845 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
*
75410861 -TATGTATTATGTAAG-T-T
1 GTAAG--TTATGTAAGTTAT
75410878 GTAAGTTAT
1 GTAAGTTAT
75410887 TATGTATTGT
Statistics
Matches: 116, Mismatches: 5, Indels: 54
0.66 0.03 0.31
Matches are distributed among these distances:
14 6 0.05
15 8 0.07
16 14 0.12
17 8 0.07
18 61 0.53
19 15 0.13
20 4 0.03
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (18 bp):
GTAAGTTATGTAAGTTAT
Found at i:75410770 original size:11 final size:9
Alignment explanation
Indices: 75410722--75410886 Score: 69
Period size: 7 Copynumber: 19.0 Consensus size: 9
75410712 AATTGCAATG
75410722 GTAAGTTAT
1 GTAAGTTAT
75410731 GTAAGTTAT
1 GTAAGTTAT
75410740 GTAAGTTAAAT
1 GTAAGTT--AT
75410751 GT-A-TTAT
1 GTAAGTTAT
75410758 GTAAGTTAAAT
1 GTAAGTT--AT
75410769 GTAAG-T-T
1 GTAAGTTAT
75410776 GTAAGTTAT
1 GTAAGTTAT
*
75410785 -TATGTATTAT
1 GTAAG--TTAT
75410795 GTAAG-T-T
1 GTAAGTTAT
75410802 GTAAGTTAAAT
1 GTAAGTT--AT
*
75410813 GT-A-TTGT
1 GTAAGTTAT
75410820 GTAAG-T-T
1 GTAAGTTAT
75410827 GTAAGTTAAAT
1 GTAAGTT--AT
75410838 GT-A-TTAT
1 GTAAGTTAT
75410845 GTAAG-T-T
1 GTAAGTTAT
75410852 GTAAGTTAT
1 GTAAGTTAT
*
75410861 -TATGTATTAT
1 GTAAG--TTAT
75410871 GTAAG-T-T
1 GTAAGTTAT
75410878 GTAAGTTAT
1 GTAAGTTAT
75410887 TATGTATTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 60
0.65 0.03 0.32
Matches are distributed among these distances:
7 41 0.34
8 18 0.15
9 27 0.22
10 12 0.10
11 23 0.19
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:75410797 original size:19 final size:19
Alignment explanation
Indices: 75410736--75411032 Score: 78
Period size: 19 Copynumber: 15.6 Consensus size: 19
75410726 GTTATGTAAG
*
75410736 TTATGTAAGTTA-AATGTA
1 TTATGTAAGTTATTATGTA
*
75410754 TTATGTAAGTTA-AATGTAA
1 TTATGTAAGTTATTATGT-A
*
75410773 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
75410791 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
*
75410816 TTGTGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
* *
75410841 TTATGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
75410857 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
75410875 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
*
75410893 TTGTGTAAGTTGCAAGTTAAATGTA
1 TTATGTAAGTT---A-TT--ATGTA
* *
75410918 TTATGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
75410934 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
75410952 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
* * *
75410970 TTGTGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
75410986 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
75411004 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
*
75411022 TTGTGTAAGTT
1 TTATGTAAGTT
75411033 GTAAGTTAAA
Statistics
Matches: 212, Mismatches: 31, Indels: 71
0.68 0.10 0.23
Matches are distributed among these distances:
14 3 0.01
15 18 0.08
16 11 0.05
17 3 0.01
18 53 0.25
19 60 0.28
20 3 0.01
21 1 0.00
22 2 0.01
23 5 0.02
24 1 0.00
25 52 0.25
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (19 bp):
TTATGTAAGTTATTATGTA
Found at i:75410801 original size:26 final size:26
Alignment explanation
Indices: 75410767--75411148 Score: 531
Period size: 26 Copynumber: 15.2 Consensus size: 26
75410757 TGTAAGTTAA
75410767 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
75410793 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
75410818 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
75410843 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
75410869 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* * *
75410895 GTGTAAGTTGCAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
75410920 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
75410946 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
75410972 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
75410998 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
75411024 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
75411049 ATGTCA---GTCA---A--ATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
75411067 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
75411092 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
75411118 ATGTAAGTAATGTAAGTTA-AATGTATT
1 ATGTAAGT--TGTAAGTTATTATGTATT
75411145 ATGT
1 ATGT
75411149 CGACAAGATT
Statistics
Matches: 323, Mismatches: 21, Indels: 23
0.88 0.06 0.06
Matches are distributed among these distances:
18 12 0.04
19 1 0.00
21 3 0.01
22 3 0.01
24 1 0.00
25 104 0.32
26 179 0.55
27 11 0.03
28 9 0.03
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (26 bp):
ATGTAAGTTGTAAGTTATTATGTATT
Found at i:75411072 original size:43 final size:46
Alignment explanation
Indices: 75410767--75411149 Score: 277
Period size: 51 Copynumber: 7.7 Consensus size: 46
75410757 TGTAAGTTAA
* * *
75410767 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TATATGTATT
* *
75410818 GTGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTCA--TGTAA--TA-TATGTATT
* * * * *
75410869 ATGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGCAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TATATGTATT
* *
75410920 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TA-TATGTATT
* * *
75410972 GTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTCA--TGTAA--TA-TATGTATT
* *
75411024 GTGTAAGTTGTAAGTTAAATGTATTATGTCA-GTCA-A-ATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTCATGTAATATATGTATT
*
75411067 ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTCA--TGTAA--TA-TATGTATT
75411118 ATGTAAGTAATGTAAGTTAAATGTATTATGTC
1 ATGTAAGT--TGTAAGTTAAATGTATTATGTC
75411150 GACAAGATTT
Statistics
Matches: 300, Mismatches: 19, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
43 36 0.12
45 1 0.00
46 3 0.01
48 3 0.01
49 1 0.00
50 24 0.08
51 114 0.38
52 97 0.32
53 21 0.07
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.46
Consensus pattern (46 bp):
ATGTAAGTTGTAAGTTAAATGTATTATGTCATGTAATATATGTATT
Found at i:75411100 original size:18 final size:18
Alignment explanation
Indices: 75411032--75411075 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
75411022 TTGTGTAAGT
75411032 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
* *
75411050 TGTCAGTCAAATGTATTA
1 TGTAAGTTAAATGTATTA
75411068 TGTAAGTT
1 TGTAAGTT
75411076 GTAAGTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (18 bp):
TGTAAGTTAAATGTATTA
Found at i:75413780 original size:7 final size:7
Alignment explanation
Indices: 75413727--75413802 Score: 64
Period size: 7 Copynumber: 10.9 Consensus size: 7
75413717 ACCTTAATCA
*
75413727 CTAAACT
1 CTAAACC
75413734 CTCAAACC
1 CT-AAACC
75413742 CTAAACC
1 CTAAACC
** *
75413749 AAAAACA
1 CTAAACC
75413756 CTAAA-C
1 CTAAACC
* *
75413762 CTACATC
1 CTAAACC
*
75413769 GTAAACC
1 CTAAACC
75413776 CTAAACC
1 CTAAACC
*
75413783 CTAAACT
1 CTAAACC
75413790 CTAAACC
1 CTAAACC
75413797 CTAAAC
1 CTAAAC
75413803 TAGAATTCAA
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
6 4 0.08
7 43 0.81
8 6 0.11
ACGTcount: A:0.46, C:0.36, G:0.01, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:75413865 original size:17 final size:17
Alignment explanation
Indices: 75413843--75413891 Score: 75
Period size: 16 Copynumber: 3.0 Consensus size: 17
75413833 TATCCTATTT
75413843 CCTACATTATATAATAA
1 CCTACATTATATAATAA
75413860 CCTACATTATAT-ATAA
1 CCTACATTATATAATAA
*
75413876 ACTACA-TATATAATAA
1 CCTACATTATATAATAA
75413892 TCTAGCGGCG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 5 0.17
16 13 0.43
17 12 0.40
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (17 bp):
CCTACATTATATAATAA
Found at i:75414094 original size:113 final size:111
Alignment explanation
Indices: 75413913--75414263 Score: 411
Period size: 113 Copynumber: 3.1 Consensus size: 111
75413903 TTCCCACAAC
* * * *
75413913 GCGCCGCTAATAATATGTTTTACCGGCGTTTTACCATAAGCGCCAC-AACTGGTAGTATACATCA
1 GCGCCGCTAATACTATGCTTTAGCGGCGTTTTA-AATAAGCGCCACTAA-T-GTAGTATACATCA
75413977 AGACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
63 AGACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
* * *
75414026 GCGCCGCTAATACTATGCTTTAGCGGCGTTTTCAAATAAGCGCCACTAATCGTAATGTACCTCAA
1 GCGCCGCTAATACTATGCTTTAGCGGCGTTTT-AAATAAGCGCCACTAAT-GTAGTATACATCAA
* * * * *
75414091 GACCAAA-CTCTGCGTTTTGGTTAA-GAAATATTGCGGCGCTTTTCACTAC
64 GACCAAAGCGCTGCGTTTTGGTTAATG---TTTTGCGGCGCTTTACAATAA
* * * *
75414140 TCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATAAGCGCCACTACTGCTAGTATACATCAA
1 GCGCCGCTAATACTATGCTTTAGCGGCGTTTTAA-ATAAGCGCCACTAATG-TAGTATACATCAA
* * *
75414205 GACCAAAGCGCTGCGTTTTGGTTAATATTTTGCGGCGTTTTCCAATAA
64 GACCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
*
75414253 GCGCCACTAAT
1 GCGCCGCTAAT
75414264 CCTAATATAC
Statistics
Matches: 200, Mismatches: 29, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
111 1 0.00
112 16 0.08
113 87 0.44
114 80 0.40
115 16 0.08
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (111 bp):
GCGCCGCTAATACTATGCTTTAGCGGCGTTTTAAATAAGCGCCACTAATGTAGTATACATCAAGA
CCAAAGCGCTGCGTTTTGGTTAATGTTTTGCGGCGCTTTACAATAA
Found at i:75414365 original size:188 final size:188
Alignment explanation
Indices: 75414048--75414445 Score: 688
Period size: 188 Copynumber: 2.1 Consensus size: 188
75414038 CTATGCTTTA
* * * *
75414048 GCGGCGTTTTCAAATAAGCGCCACTAATCGTAATGTACCTCAAGACCAAACTCTGCGTTTTGGTT
1 GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
75414113 AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
66 AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
75414178 AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
131 AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
75414236 GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
1 GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
* * *
75414301 AAGAAATCTTGCGGCGCTTTTCACTACTCGCTGCTAATACTATTCTTTAGTAGCGTTTTAATATA
66 AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
* *
75414366 AGTGCCACTACTGGTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
131 AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
* * *
75414424 GCGACGCTTTACAATAAGCGCC
1 GCGGCGTTTTCCAATAAGCGCC
75414446 GCTACTACTA
Statistics
Matches: 198, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
188 198 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (188 bp):
GCGGCGTTTTCCAATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGTT
AAGAAATATTGCGGCGCTTTTCACTACTCGCCGCTAATACTATTCTTTAGCAGCGTTTTAATATA
AGCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGTTAATATTTT
Found at i:75414486 original size:113 final size:114
Alignment explanation
Indices: 75414236--75414661 Score: 464
Period size: 114 Copynumber: 3.7 Consensus size: 114
75414226 TTAATATTTT
* ** *
75414236 GCGGCGTTTTCCA-ATAAGCGCCACTAATCCTAATATACCGCAAGACCAAACTCTGCGTTTTGGT
1 GCGGCGTTTT-AATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGT
* * * *
75414300 TAAGAAATCTTGCGGCGCTTTTCACTACTCGCTGCTAATACTATTCTTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
** * * ** *
75414350 GTAGCGTTTTAATATAAGTGCCACTACTGGTAGTATACATCAAGACCAAAGCGCTGCGTTTTGGT
1 GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAA-CGCTGCGTTTTGGT
* * * * ** * * *
75414415 T-A-ATATTTTGCGACGCTTTACAATAAGCGCCGCTACTACTATGCGTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
* * *
75414463 GCGGCGTTTTTAA-ATAAGCGCCACTAATCCTAATGTACCTCAAGACCAAACTCTGCGTTTTGGT
1 GCGGCG-TTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGT
*
75414527 TAAGAAATATTGCGGCGCTTTTCAGTACTCGCCGCTAATACTATACTTTA
65 TAAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
* ** * *
75414577 GCGGCGTTTGAATATAAGCGCCACTAAGGCTACTATACATCAAGACCAAAGCGCTGCGTTTTGGA
1 GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAA-CGCTGCGTTTTGGT
** *
75414642 TAAGAGCTTTTGCGGCGCTT
65 TAAGAAATATTGCGGCGCTT
75414662 GGTAGTAAAC
Statistics
Matches: 252, Mismatches: 53, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
112 14 0.06
113 76 0.30
114 119 0.47
115 43 0.17
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (114 bp):
GCGGCGTTTTAATATAAGCGCCACTAATCCTAATATACATCAAGACCAAACGCTGCGTTTTGGTT
AAGAAATATTGCGGCGCTTTTCAATACTCGCCGCTAATACTATACTTTA
Found at i:75435986 original size:23 final size:23
Alignment explanation
Indices: 75435933--75435987 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
75435923 AATTGGTTTG
75435933 TTTTTTA-TTTTGAAATAATTAA
1 TTTTTTATTTTTGAAATAATTAA
* * * * *
75435955 ATTTATATTTTTGAATTATTTTA
1 TTTTTTATTTTTGAAATAATTAA
75435978 TTTTTTATTT
1 TTTTTTATTT
75435988 GGAAACAATT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 5 0.20
23 20 0.80
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTTTTATTTTTGAAATAATTAA
Found at i:75439296 original size:23 final size:23
Alignment explanation
Indices: 75439269--75439315 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
75439259 TTTCAGTTAA
75439269 TATTTATTT-TTTAAAAAAACTAT
1 TATTT-TTTGTTTAAAAAAACTAT
* *
75439292 TATTTTTTGTTTAACAAAATTAT
1 TATTTTTTGTTTAAAAAAACTAT
75439315 T
1 T
75439316 TCAAAAGCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.55
Consensus pattern (23 bp):
TATTTTTTGTTTAAAAAAACTAT
Found at i:75439642 original size:29 final size:28
Alignment explanation
Indices: 75439590--75439649 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
75439580 TTAATTATTT
*
75439590 AATTTTTTAATAATATAGAGATTAAAAC
1 AATTTTTTAATAATAAAGAGATTAAAAC
*
75439618 AATTTATTTAATAATAAA-AGAATTATAAC
1 AATTT-TTTAATAATAAAGAG-ATTAAAAC
75439647 AAT
1 AAT
75439650 CAATGATTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.38
Consensus pattern (28 bp):
AATTTTTTAATAATAAAGAGATTAAAAC
Found at i:75440649 original size:15 final size:17
Alignment explanation
Indices: 75440629--75440661 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
75440619 TTTCACATTT
75440629 AAAAT-AATT-TTTTTA
1 AAAATAAATTCTTTTTA
75440644 AAAATAAATTCTTTTTA
1 AAAATAAATTCTTTTTA
75440661 A
1 A
75440662 CTTTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 4 0.25
17 7 0.44
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (17 bp):
AAAATAAATTCTTTTTA
Found at i:75443045 original size:50 final size:51
Alignment explanation
Indices: 75442968--75443096 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
75442958 GACCATGGCA
*
75442968 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAAGACAAATG
* *
75443019 A-AAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAAGACAAATG
* * *
75443069 ACAAGTGAAAAGTGGTAGCTTCTGCTAC
1 ACAAGTGATAAGTGATAGCTTCAGCTAC
75443097 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 47 0.67
51 23 0.33
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAAGACAAATG
Found at i:75443110 original size:31 final size:31
Alignment explanation
Indices: 75443072--75443158 Score: 147
Period size: 31 Copynumber: 2.8 Consensus size: 31
75443062 ACAAATGACA
*
75443072 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
75443103 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
75443134 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
75443159 AAATGACAAG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 52 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:75443306 original size:49 final size:49
Alignment explanation
Indices: 75443187--75443372 Score: 172
Period size: 49 Copynumber: 3.8 Consensus size: 49
75443177 GATTTCCGTA
* * * * *
75443187 TAAGACCATA-TCTGGGATATGGCATCG-GTGTG-ATATATG-CTACTGTA
1 TAAGACCATAGT-TGGGATATGGCATCGTATATGAATATGTGATTAC-GTG
*
75443234 TAAGACCATA-TCTGGGATATGGCATCAGTATATGAATATGTGATT-TGTG
1 TAAGACCATAGT-TGGGATATGGCATC-GTATATGAATATGTGATTACGTG
* *
75443283 TAAGACCATAGTTGGGTTATGGCATCG-ATATGTGATATGTGATTACGTG
1 TAAGACCATAGTTGGGATATGGCATCGTATATG-AATATGTGATTACGTG
* *
75443332 T-AGACCATAGCTGGGCTATGGCATCGATATATGAATATGTG
1 TAAGACCATAGTTGGGATATGGCATCG-TATATGAATATGTG
75443373 TAAGACCATA
Statistics
Matches: 118, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
47 31 0.26
48 35 0.30
49 39 0.33
50 12 0.10
51 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.33
Consensus pattern (49 bp):
TAAGACCATAGTTGGGATATGGCATCGTATATGAATATGTGATTACGTG
Found at i:75443340 original size:48 final size:48
Alignment explanation
Indices: 75443187--75443372 Score: 168
Period size: 48 Copynumber: 3.9 Consensus size: 48
75443177 GATTTCCGTA
* * * * *
75443187 TAAGACCATA-TCTGGGATATGGCATCG--GTGTGATATATGCTACTGTA
1 TAAGACCATAGT-TGGGATATGGCATCGATATGTGATATGTGATTC-GTG
* *
75443234 TAAGACCATA-TCTGGGATATGGCATCAGTATATG-AATATGTGATTTGTG
1 TAAGACCATAGT-TGGGATATGGCATC-G-ATATGTGATATGTGATTCGTG
*
75443283 TAAGACCATAGTTGGGTTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGTTGGGATATGGCATCGATATGTGATATGTGATT-CGTG
* * *
75443332 T-AGACCATAGCTGGGCTATGGCATCGATATATGAATATGTG
1 TAAGACCATAGTTGGGATATGGCATCGATATGTG-ATATGTG
75443373 TAAGACCATA
Statistics
Matches: 118, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
47 31 0.26
48 41 0.35
49 36 0.31
50 8 0.07
51 2 0.02
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.33
Consensus pattern (48 bp):
TAAGACCATAGTTGGGATATGGCATCGATATGTGATATGTGATTCGTG
Found at i:75443384 original size:42 final size:43
Alignment explanation
Indices: 75443279--75443442 Score: 156
Period size: 42 Copynumber: 3.7 Consensus size: 43
75443269 ATATGTGATT
* * *
75443279 TGTGTAAGACCATAGTTGGGTTATGGCATCGATATGTGATATG-TGA
1 TGTGTAAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATGAAGA
*
75443325 TTACGTGT-AGACCATAGCTGGGCTATGGCATCGA-TATATGAATA
1 -T--GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGA
* *
75443369 TGTGTAAGACCATAGCTGGGCTATGGTATC-ATTATGTGAAGA
1 TGTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGA
* **
75443411 TGTGTAAGACCATAGTTGAACTATGGCATCGA
1 TGTGTAAGACCATAGCTGGGCTATGGCATCGA
75443443 GAAAATGAAG
Statistics
Matches: 100, Mismatches: 11, Indels: 16
0.79 0.09 0.13
Matches are distributed among these distances:
41 5 0.05
42 57 0.57
43 7 0.07
44 2 0.02
46 1 0.01
47 1 0.01
48 23 0.23
49 4 0.04
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGA
Found at i:75465558 original size:14 final size:13
Alignment explanation
Indices: 75465515--75465582 Score: 55
Period size: 15 Copynumber: 4.8 Consensus size: 13
75465505 TTTATTTGTT
*
75465515 TTAAATTATATAA
1 TTAATTTATATAA
*
75465528 TTAATGATATATAAA
1 TTAAT-TTATAT-AA
75465543 TATAATTTATATAATA
1 T-TAATTTATAT-A-A
75465559 TTAATTTATGATAA
1 TTAATTTAT-ATAA
*
75465573 TTAAATTATA
1 TTAATTTATA
75465583 ATGATATTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
13 5 0.11
14 14 0.30
15 19 0.41
16 8 0.17
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
TTAATTTATATAA
Found at i:75465595 original size:35 final size:35
Alignment explanation
Indices: 75465519--75465596 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 35
75465509 TTTGTTTTAA
*
75465519 ATTATA-TAATTAATGATATATAAATATAATTTAT
1 ATTATATTAATTAATGATATATAAATATAATTGAT
* *
75465553 ATAATATTAATTTATGATA-ATTAAATTATAA-TGAT
1 ATTATATTAATTAATGATATA-TAAA-TATAATTGAT
75465588 ATTATATTA
1 ATTATATTA
75465597 TGAAATAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
34 6 0.16
35 26 0.70
36 5 0.14
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (35 bp):
ATTATATTAATTAATGATATATAAATATAATTGAT
Found at i:75465610 original size:29 final size:29
Alignment explanation
Indices: 75465516--75465610 Score: 76
Period size: 30 Copynumber: 3.3 Consensus size: 29
75465506 TTATTTGTTT
* *
75465516 TAAATTATATAATTA-ATGATA-TAT-AAA
1 TAAATT-TATAATAATATTATATTATGAAA
75465543 TATAATTTAT-ATAATATTA-ATTTATGATAA
1 TA-AATTTATAATAATATTATA-TTATGA-AA
*
75465573 TTAAA-TTATAATGATATTATATTATGAAA
1 -TAAATTTATAATAATATTATATTATGAAA
75465602 TAAATTTAT
1 TAAATTTAT
75465611 GCCAATTGTG
Statistics
Matches: 55, Mismatches: 3, Indels: 18
0.72 0.04 0.24
Matches are distributed among these distances:
26 4 0.07
27 8 0.15
28 11 0.20
29 11 0.20
30 18 0.33
31 3 0.05
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.46
Consensus pattern (29 bp):
TAAATTTATAATAATATTATATTATGAAA
Found at i:75466923 original size:430 final size:430
Alignment explanation
Indices: 75466123--75467004 Score: 1656
Period size: 430 Copynumber: 2.1 Consensus size: 430
75466113 GCCTCCCTGA
*
75466123 GGTTGCAGTGGAGCAGATCAAATACATCGAATTTTGCCTCCTCAAATGCAGTGAAGTAGATTCAA
1 GGTTGCAGTGGAGCAGATCAAATACATCGAATTTTGCCTCCTCAAATGCAGTGAAGCAGATTCAA
75466188 ACCACCAAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATGGATATTACTGCCCT
66 ACCACCAAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATGGATATTACTGCCCT
*
75466253 AAGCAATAGGGTAACGAGCCAAATTTTCAAACCTTAAACCCCTAAGCAGTAGGATAACAGGTTGA
131 AAGCAATAGGGTAACGAGCCAAATTTTCAAACCTTAAACCCCTAAGCAGTAGGATAACAGGTTAA
75466318 GTTTACAGATCTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAGCCTTAACCCCCTA
196 GTTTACAGATCTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAGCCTTAACCCCCTA
* * *
75466383 AGTAGTAGGGTAACAGGTTGAAAATCAAATGTCTTCTCCCTGAAATGGCGTTGGAGCAGCTAAAA
261 AGCAGTAGGGTAACAGGTTGAAAATCAAATATCTTCTCCCTGAAATGGCATTGGAGCAGCTAAAA
*
75466448 GCCACAGCAGATCTCCTTGAAGTTTCGGTAGATTAAGCGGAGCTACAGCAGGTCTCCTTGAAGTT
326 GCCACAGCAGATCTCCTTGAAGTTTCAGTAGATTAAGCGGAGCTACAGCAGGTCTCCTTGAAGTT
*
75466513 TCAGTGGAATTGATTGAAGTCACGTGTCTTATCTCTATGG
391 TCAGTGGAATTGATTGAAGTCACGTGTCTTATCTCCATGG
*
75466553 GGTTGCAGTGGAGCAGATCAAATACATCGAATTTTGCCTCCTCGAATGCAGTGAAGCAGATTCAA
1 GGTTGCAGTGGAGCAGATCAAATACATCGAATTTTGCCTCCTCAAATGCAGTGAAGCAGATTCAA
*
75466618 ACCACCAAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATGGGTATTACTGCCCT
66 ACCACCAAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATGGATATTACTGCCCT
75466683 AAGCAATAGGGTAACGAGCCAAATTTTCAAACCTTAAACCCCTAAGCAGTAGGATAACAGGTTAA
131 AAGCAATAGGGTAACGAGCCAAATTTTCAAACCTTAAACCCCTAAGCAGTAGGATAACAGGTTAA
* *
75466748 GTTTATAGATCTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGGCAAGCCTTAACCCCCTA
196 GTTTACAGATCTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAGCCTTAACCCCCTA
75466813 AGCAGTAGGGTAACAGGTTGAAAATCAAATATCTTCTCCCTGAAATGGCATTGGAGCAGCTAAAA
261 AGCAGTAGGGTAACAGGTTGAAAATCAAATATCTTCTCCCTGAAATGGCATTGGAGCAGCTAAAA
75466878 GCCACAGCAGATCTCCTTGAAGTTTCAGTAGATTAAGCGGAGCTACAGCAGGTCTCCTTGAAGTT
326 GCCACAGCAGATCTCCTTGAAGTTTCAGTAGATTAAGCGGAGCTACAGCAGGTCTCCTTGAAGTT
75466943 TCAGTGGAATTGATTGAAGTCACGTGTCTTATCTCCATGG
391 TCAGTGGAATTGATTGAAGTCACGTGTCTTATCTCCATGG
*
75466983 AGTTGCAGTGGAGCAGATCAAA
1 GGTTGCAGTGGAGCAGATCAAA
75467005 ACAAACCTTA
Statistics
Matches: 440, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
430 440 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.24
Consensus pattern (430 bp):
GGTTGCAGTGGAGCAGATCAAATACATCGAATTTTGCCTCCTCAAATGCAGTGAAGCAGATTCAA
ACCACCAAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATGGATATTACTGCCCT
AAGCAATAGGGTAACGAGCCAAATTTTCAAACCTTAAACCCCTAAGCAGTAGGATAACAGGTTAA
GTTTACAGATCTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAGCCTTAACCCCCTA
AGCAGTAGGGTAACAGGTTGAAAATCAAATATCTTCTCCCTGAAATGGCATTGGAGCAGCTAAAA
GCCACAGCAGATCTCCTTGAAGTTTCAGTAGATTAAGCGGAGCTACAGCAGGTCTCCTTGAAGTT
TCAGTGGAATTGATTGAAGTCACGTGTCTTATCTCCATGG
Found at i:75468586 original size:18 final size:18
Alignment explanation
Indices: 75468532--75468592 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
75468522 ATTGTATCTA
*
75468532 ATTTTATTTATT-TATTT
1 ATTTTATGTATTATATTT
* *
75468549 AAATTTATGTTATTA-CTTT
1 -ATTTTATG-TATTATATTT
75468568 ATTTTATGTATTATATTT
1 ATTTTATGTATTATATTT
75468586 ATATTTA
1 AT-TTTA
75468593 CATTTACGCA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
17 5 0.15
18 18 0.53
19 11 0.32
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.66
Consensus pattern (18 bp):
ATTTTATGTATTATATTT
Found at i:75468672 original size:21 final size:22
Alignment explanation
Indices: 75468640--75468691 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
75468630 TTTTTATATA
*
75468640 TATTATTTTCA-TTTGCATC-T
1 TATTATTATCATTTTGCATCTT
75468660 TACTTATTATCATTTTGCATCTT
1 TA-TTATTATCATTTTGCATCTT
75468683 TATTATTAT
1 TATTATTAT
75468692 TATTATTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 2 0.07
21 8 0.29
22 15 0.54
23 3 0.11
ACGTcount: A:0.23, C:0.13, G:0.04, T:0.60
Consensus pattern (22 bp):
TATTATTATCATTTTGCATCTT
Found at i:75468688 original size:3 final size:3
Alignment explanation
Indices: 75468682--75468717 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
75468672 TTTTGCATCT
75468682 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
75468718 CCACCATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:75468963 original size:19 final size:20
Alignment explanation
Indices: 75468939--75468981 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
75468929 TACTATTACA
*
75468939 TTATTAGCC-TATTTTTTTT
1 TTATTAGCCTTATATTTTTT
*
75468958 TTATTATCCTTATATTTTTT
1 TTATTAGCCTTATATTTTTT
75468978 TTAT
1 TTAT
75468982 CTTTTGTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.19, C:0.09, G:0.02, T:0.70
Consensus pattern (20 bp):
TTATTAGCCTTATATTTTTT
Found at i:75469027 original size:15 final size:15
Alignment explanation
Indices: 75468991--75469028 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
75468981 TCTTTTGTCA
*
75468991 ATATATTTATTATTTT
1 ATAT-TTTACTATTTT
75469007 -TATTTTACTATTTT
1 ATATTTTACTATTTT
75469021 ATATTTTA
1 ATATTTTA
75469029 TTTATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (15 bp):
ATATTTTACTATTTT
Found at i:75469102 original size:25 final size:23
Alignment explanation
Indices: 75469073--75469131 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 23
75469063 TTTTACTTAT
75469073 TCTTATTATTCTTGT-TTATTTTTA
1 TCTTATTATT-TT-TATTATTTTTA
*
75469097 TCCTTATCATTTTTATTATTTTTA
1 T-CTTATTATTTTTATTATTTTTA
75469121 TC-TATTATTTT
1 TCTTATTATTTT
75469132 CCTCTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 8 0.26
23 2 0.06
24 13 0.42
25 8 0.26
ACGTcount: A:0.19, C:0.10, G:0.02, T:0.69
Consensus pattern (23 bp):
TCTTATTATTTTTATTATTTTTA
Found at i:75471494 original size:19 final size:20
Alignment explanation
Indices: 75471452--75471487 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 20
75471442 CAAAAAAAAA
75471452 GTTTATTTATGAATTTTAAT
1 GTTTATTTATGAATTTTAAT
75471472 GTTTA-TTAT-AATTTTA
1 GTTTATTTATGAATTTTA
75471488 TTTGTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.44
19 4 0.25
20 5 0.31
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (20 bp):
GTTTATTTATGAATTTTAAT
Done.