Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 227 of 284
Found at i:75471789 original size:20 final size:19
Alignment explanation
Indices: 75471761--75471799 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
75471751 TTTTTTTTAG
75471761 TGATAATTTGATTTCACTTT
1 TGATAATTTGATTTC-CTTT
* *
75471781 TGATGATTTGTTTTCCTTT
1 TGATAATTTGATTTCCTTT
75471800 CATTTTCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.18, C:0.10, G:0.13, T:0.59
Consensus pattern (19 bp):
TGATAATTTGATTTCCTTT
Found at i:75477990 original size:20 final size:19
Alignment explanation
Indices: 75477967--75478033 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
75477957 ACTTTGATAT
75477967 CTCTGTTTGAACTTCAGTGC
1 CTCTGTTTGAACTTC-GTGC
* *
75477987 CTCTGATTGCACATTCGTGC
1 CTCTGTTTGAAC-TTCGTGC
* *
75478007 CTCTTTTTGTACTTCGATGC
1 CTCTGTTTGAACTTCG-TGC
*
75478027 TTCTGTT
1 CTCTGTT
75478034 GCGCATCTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 4 0.11
20 31 0.82
21 3 0.08
ACGTcount: A:0.12, C:0.25, G:0.18, T:0.45
Consensus pattern (19 bp):
CTCTGTTTGAACTTCGTGC
Found at i:75480174 original size:579 final size:579
Alignment explanation
Indices: 75478564--75480271 Score: 2690
Period size: 576 Copynumber: 3.0 Consensus size: 579
75478554 GTTTTGTTGT
* * *
75478564 AAATATGTAAATGTTATACTATAATGGTGTTCCTAATGAAATGTTTGGTTTTGAATACGTGTTTA
1 AAATATGTAAATGTTATACTATAATGGTGTTCCTAGTGAAATGTTTGATTTTGAATATGTGTTTA
* * * *
75478629 AAGTGTTTTTGGTTGGATTGATTCTTACTGGTCAAGAGCTAAATGGTAATACTTTCAAATGTTAA
66 AAGTGTTTTTGGTTGGATTGATTCTTAATGGTCAAGAGCTAAGTGGTAATACTTTAAAATGGTAA
* *
75478694 GTTTTGAATATGTTTGTACTTTAGTTAATTTGGTTGATGGTTGAGCGTGAATAGATGTTTAATGT
131 GTTTTGAATATGTTTGTACTTTGGTTAATTTGGTTGATGGTTGAGCATGAATAGATGTTTAATGT
* * * *
75478759 CATGTGCTTACTTAGCTAAATTAGCAATTGAATAATCTTTAATTGTGGTGCATTTGAATGGCATA
196 CATATGCTTACTTAGCTAAATTAGTAATTGAATGATCTTTAATTATGGTGCATTTGAATGGCATA
*
75478824 TTGGTTAGGCGTGAAATGAATGAAATTTTAGCATGTATTTGATGATTTAAATGTGTTTTTGAACA
261 TTGGTTAGGCGTGAAATGAATGAAATTTTAGCATGTATTTGATGATTTAAATGTGTTTTTGAACC
*
75478889 TAGGAACTGATCTAGATATGGCATGTCTTGTTGTGCAAGGAATAATGCATGGCATTGCTTGATTT
326 TAGGAATTGATCTAGATATGGCATGTCTTGTTGTGCAAGGAATAATGCATGGCATTGCTTGATTT
* * *
75478954 AGGGGTCAAAAACGGTGCACACGACCATGTGCCACACACGATCACCACGCACGGTCGTGTGTAAT
391 AGGGGTCAAAAAAGGTACACACGACCATGTGCCACACACGGTCACCACGCACGGTCGTGTGTAAT
* * *
75479019 TATTGATTATTGGTGCAGTATCCACACGGCCTAACACATAGCCTGTGACATGACCGTGTGAGCCA
456 TATTGATTATAGGTGCAGTATCCACACGGCCTAACACATGGCCTGCGACATGACCGTGTGAGCCA
* * * * * **
75479084 AAACAGATTGTTACACGGTCTAGCACACGGCCTGCGACACTGTCGTATGACCCGGCTTC
521 AAATAGATTGTTACACGGTCTAGCACACAGCCTGCAACACTATCATATGACCCAACTTC
* * *
75479143 GAATATGTAAATGTTATACTATAATGGTGTTCCTAGTGAAATGTCT-AGTTTTGAATATATGTTT
1 AAATATGTAAATGTTATACTATAATGGTGTTCCTAGTGAAATGTTTGA-TTTTGAATATGTGTTT
* * *
75479207 AAAGTGTTTTTGGTTGGACTGATTCTTAATGGTTAAGAGCTAAGCT-GTAATACTTTGAAATGGT
65 AAAGTGTTTTTGGTTGGATTGATTCTTAATGGTCAAGAGCTAAG-TGGTAATACTTTAAAATGGT
75479271 AAGTTTTGAATATG---GTACTTTGGTTAATTTGGTTGATGGTTGAGCATGAATAGATGTTTAAT
129 AAGTTTTGAATATGTTTGTACTTTGGTTAATTTGGTTGATGGTTGAGCATGAATAGATGTTTAAT
* *
75479333 GTCATATGCTTACTTAGCTAAATTAGTAATTGAATGATCTTTAATTCTGGTGCATTTGAATGACA
194 GTCATATGCTTACTTAGCTAAATTAGTAATTGAATGATCTTTAATTATGGTGCATTTGAATGGCA
*
75479398 TATTAGTTAGGCGTGAAATGAATGAAATTTTAGCATGTATTTGATGATTTAAATGTGTTTTTGAA
259 TATTGGTTAGGCGTGAAATGAATGAAATTTTAGCATGTATTTGATGATTTAAATGTGTTTTTGAA
* * * *
75479463 CCTAGGAATTGATCTAGATATGGTATGTCTTATTGTACAAGGAATAATGCATGGCATTGCTTAAT
324 CCTAGGAATTGATCTAGATATGGCATGTCTTGTTGTGCAAGGAATAATGCATGGCATTGCTTGAT
* * * *
75479528 TTAAGGGTCAAAAAAGGTACACACGGCCATGTGCCACACAAGGTCACCACGCACGGTCGTTTGTA
389 TTAGGGGTCAAAAAAGGTACACACGACCATGTGCCACACACGGTCACCACGCACGGTCGTGTGTA
* * * *
75479593 ATTATTTATTATAGGTGCAGTATCCACACAGCCTAACACATGGCCTGCAACACGACCGTGTGAGC
454 ATTATTGATTATAGGTGCAGTATCCACACGGCCTAACACATGGCCTGCGACATGACCGTGTGAGC
* *
75479658 CAAAATAGATTGTTACACGGTTTAGCACATAGCCTGCAACACTATCATATGACCCAACTTC
519 CAAAATAGATTGTTACACGGTCTAGCACACAGCCTGCAACACTATCATATGACCCAACTTC
*
75479719 AAATATGTAAATGTTATACTATAATGGTGTTCTTAGTGAAATGTTTGATTTTGAATATGTGTTTA
1 AAATATGTAAATGTTATACTATAATGGTGTTCCTAGTGAAATGTTTGATTTTGAATATGTGTTTA
75479784 AAGTGTTTTTGGTTGGATTGATTCTTAATGGTCAAGAGCTAAGTGGTAATACTTTAAAATGGTAA
66 AAGTGTTTTTGGTTGGATTGATTCTTAATGGTCAAGAGCTAAGTGGTAATACTTTAAAATGGTAA
*
75479849 GTTTTGAATATGTTTGTACTTTGGTTATTTTGGTTGATGGTTGAGCATGAATAGATGTTTAATGT
131 GTTTTGAATATGTTTGTACTTTGGTTAATTTGGTTGATGGTTGAGCATGAATAGATGTTTAATGT
* *
75479914 CATCTGCTTACTTAGCTAAATTAGTGATTGAATGATCTTTAATTATGGTGCATTTGAATGGCATA
196 CATATGCTTACTTAGCTAAATTAGTAATTGAATGATCTTTAATTATGGTGCATTTGAATGGCATA
* *
75479979 TTGGTTAGGAGTGAAATGAATGAAATTTTAGCATGTATTTGATTATTTAAATGTGTTTTTGAACC
261 TTGGTTAGGCGTGAAATGAATGAAATTTTAGCATGTATTTGATGATTTAAATGTGTTTTTGAACC
* * *
75480044 TAAGAATTGATCTAGATATGGCATGTCTTGTTGTGCAAGGAATAATGCATGACATTGTTTGATTT
326 TAGGAATTGATCTAGATATGGCATGTCTTGTTGTGCAAGGAATAATGCATGGCATTGCTTGATTT
* * * * * *
75480109 AGGGGTTAAAAAGGGTACACATGACCATGTGCCACACACGGTCACTACGCATGGCCGTGTGTAAT
391 AGGGGTCAAAAAAGGTACACACGACCATGTGCCACACACGGTCACCACGCACGGTCGTGTGTAAT
* * ** * *
75480174 TATTGATTATAGGT-AAGTATCCACATGGCCTAGTACATGGCTTGCGACATGACCGTGTAAGCCA
456 TATTGATTATAGGTGCAGTATCCACACGGCCTAACACATGGCCTGCGACATGACCGTGTGAGCCA
* *
75480238 AAATAGATTGTTACATGGTCTAGCACACGGCCTG
521 AAATAGATTGTTACACGGTCTAGCACACAGCCTG
75480272 TGACACCGTC
Statistics
Matches: 1027, Mismatches: 95, Indels: 15
0.90 0.08 0.01
Matches are distributed among these distances:
575 1 0.00
576 528 0.51
577 1 0.00
578 71 0.07
579 425 0.41
580 1 0.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (579 bp):
AAATATGTAAATGTTATACTATAATGGTGTTCCTAGTGAAATGTTTGATTTTGAATATGTGTTTA
AAGTGTTTTTGGTTGGATTGATTCTTAATGGTCAAGAGCTAAGTGGTAATACTTTAAAATGGTAA
GTTTTGAATATGTTTGTACTTTGGTTAATTTGGTTGATGGTTGAGCATGAATAGATGTTTAATGT
CATATGCTTACTTAGCTAAATTAGTAATTGAATGATCTTTAATTATGGTGCATTTGAATGGCATA
TTGGTTAGGCGTGAAATGAATGAAATTTTAGCATGTATTTGATGATTTAAATGTGTTTTTGAACC
TAGGAATTGATCTAGATATGGCATGTCTTGTTGTGCAAGGAATAATGCATGGCATTGCTTGATTT
AGGGGTCAAAAAAGGTACACACGACCATGTGCCACACACGGTCACCACGCACGGTCGTGTGTAAT
TATTGATTATAGGTGCAGTATCCACACGGCCTAACACATGGCCTGCGACATGACCGTGTGAGCCA
AAATAGATTGTTACACGGTCTAGCACACAGCCTGCAACACTATCATATGACCCAACTTC
Found at i:75482329 original size:21 final size:21
Alignment explanation
Indices: 75482274--75482334 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
75482264 AGAAATTAGA
*
75482274 AATTAATAAAATTAATTAATT
1 AATTAATAAAAATAATTAATT
* *
75482295 AATTAATTATAATAA-TAATT
1 AATTAATAAAAATAATTAATT
*
75482315 AGGTTAATAAAAATATATTA
1 A-ATTAATAAAAATA-ATTA
75482335 GTGGGGATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
20 6 0.19
21 22 0.71
22 1 0.03
23 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (21 bp):
AATTAATAAAAATAATTAATT
Found at i:75482555 original size:14 final size:14
Alignment explanation
Indices: 75482536--75482566 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
75482526 ATTTATTAGA
75482536 TTTGAAATCAAGAG
1 TTTGAAATCAAGAG
75482550 TTTGAAATCAAGAG
1 TTTGAAATCAAGAG
75482564 TTT
1 TTT
75482567 TCTCTCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.35
Consensus pattern (14 bp):
TTTGAAATCAAGAG
Found at i:75487180 original size:38 final size:38
Alignment explanation
Indices: 75487138--75487212 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
75487128 AAGTCTTTTA
**
75487138 TAAAGTCTTGGACAAAAACCGGGTTTAATCTATAGCAC
1 TAAAGTCTTGGACAAAAACCGACTTTAATCTATAGCAC
*
75487176 TAAAGTCTTGGACAAAAATCGACTTTAATCTATAGCA
1 TAAAGTCTTGGACAAAAACCGACTTTAATCTATAGCA
75487213 TCACCATTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (38 bp):
TAAAGTCTTGGACAAAAACCGACTTTAATCTATAGCAC
Found at i:75488046 original size:16 final size:17
Alignment explanation
Indices: 75488022--75488059 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
75488012 TTGTATAAAT
75488022 TTTTAATTTAAG-TTTA
1 TTTTAATTTAAGATTTA
*
75488038 TTTTGATTTAAGATTTTA
1 TTTTAATTTAAGA-TTTA
75488056 TTTT
1 TTTT
75488060 TAGAAATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 11 0.58
18 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (17 bp):
TTTTAATTTAAGATTTA
Found at i:75488484 original size:4 final size:4
Alignment explanation
Indices: 75488475--75488500 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
75488465 TTGGAAGTAC
75488475 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
75488501 ACTAAAAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:75508390 original size:68 final size:66
Alignment explanation
Indices: 75508318--75508467 Score: 169
Period size: 67 Copynumber: 2.2 Consensus size: 66
75508308 CATCATGTGT
* * * *
75508318 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
75508381 TGTAG
62 TGTAG
** * *
75508386 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
75508451 AG
65 AG
75508453 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
75508468 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 24 0.34
65 3 0.04
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.21
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:75508423 original size:64 final size:64
Alignment explanation
Indices: 75508342--75508525 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
75508332 AGACATTATG
* * *
75508342 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
75508406 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
75508471 AA
63 AA
* * *
75508473 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
75508526 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 31 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:75513890 original size:32 final size:32
Alignment explanation
Indices: 75513812--75514034 Score: 250
Period size: 32 Copynumber: 6.9 Consensus size: 32
75513802 TTTCTGAGTG
* *
75513812 GTACACACAAAGTATACCTTTCCTTTTCATA-T
1 GTACACACAAAGTATACATATCCTTTTCA-AGT
* *
75513844 GGTATACACAAAGTATACATTTCCTTTTCAAGT
1 -GTACACACAAAGTATACATATCCTTTTCAAGT
* *
75513877 GTACACACAAAGTATACCTTTCCTTTTCAAGT
1 GTACACACAAAGTATACATATCCTTTTCAAGT
* * *
75513909 GTACACACAAAGTGTACATAACCTTTTCAAAT
1 GTACACACAAAGTATACATATCCTTTTCAAGT
* *
75513941 GTACACACAAAGTGTACATAACCTTTTCAAGT
1 GTACACACAAAGTATACATATCCTTTTCAAGT
* * * *
75513973 GTACACACAAAGTGTACAAACCCTTTTCATGT
1 GTACACACAAAGTATACATATCCTTTTCAAGT
* * *
75514005 GGTATACACAAAGTATACCTAACCTTTTCA
1 -GTACACACAAAGTATACATATCCTTTTCA
75514035 CATTCGATAG
Statistics
Matches: 170, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
32 118 0.69
33 52 0.31
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.32
Consensus pattern (32 bp):
GTACACACAAAGTATACATATCCTTTTCAAGT
Found at i:75513945 original size:64 final size:64
Alignment explanation
Indices: 75513812--75514034 Score: 279
Period size: 64 Copynumber: 3.5 Consensus size: 64
75513802 TTTCTGAGTG
** * * **
75513812 GTACACACAAAGTATACCTTTCCTTTTCATA-TGGTATACACAAAGTATACATTTCCTTTTCAAG
1 GTACACACAAAGTATACCTAACCTTTTCA-AGT-GTACACACAAAGTGTACATAACCTTTTCAAG
75513876 T
64 T
** *
75513877 GTACACACAAAGTATACCTTTCCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAAAT
1 GTACACACAAAGTATACCTAACCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAAGT
* * *
75513941 GTACACACAAAGTGTACATAACCTTTTCAAGTGTACACACAAAGTGTACA-AACCCTTTTCATGT
1 GTACACACAAAGTATACCTAACCTTTTCAAGTGTACACACAAAGTGTACATAA-CCTTTTCAAGT
*
75514005 GGTATACACAAAGTATACCTAACCTTTTCA
1 -GTACACACAAAGTATACCTAACCTTTTCA
75514035 CATTCGATAG
Statistics
Matches: 141, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
63 2 0.01
64 83 0.59
65 56 0.40
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.32
Consensus pattern (64 bp):
GTACACACAAAGTATACCTAACCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAAGT
Found at i:75514069 original size:29 final size:29
Alignment explanation
Indices: 75514027--75514183 Score: 269
Period size: 29 Copynumber: 5.4 Consensus size: 29
75514017 GTATACCTAA
*
75514027 CCTTTTCACATTCGATAGCCAAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
75514056 CCTTTTCACATTCGATAGCCGAAGCTATCC
1 CCTTTTCACATTCGATAGCCGAAGCTAT-C
* *
75514086 CCTTTTTACATTCAATAGCCGAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
75514115 CCTTTTCACATTCGATAGCCGAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
75514144 CCTTTTCACATTCGATAGCCGAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
*
75514173 CTTTTTCACAT
1 CCTTTTCACAT
75514184 GGTACACACA
Statistics
Matches: 121, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
29 94 0.78
30 27 0.22
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.33
Consensus pattern (29 bp):
CCTTTTCACATTCGATAGCCGAAGCTATC
Found at i:75514097 original size:59 final size:58
Alignment explanation
Indices: 75514027--75514183 Score: 269
Period size: 59 Copynumber: 2.7 Consensus size: 58
75514017 GTATACCTAA
*
75514027 CCTTTTCACATTCGATAGCCAAAGCTATCCCTTTTCACATTCGATAGCCGAAGCTATCC
1 CCTTTTCACATTCGATAGCCGAAGCTATCCCTTTTCACATTCGATAGCCGAAGCTAT-C
* *
75514086 CCTTTTTACATTCAATAGCCGAAGCTATCCCTTTTCACATTCGATAGCCGAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATCCCTTTTCACATTCGATAGCCGAAGCTATC
*
75514144 CCTTTTCACATTCGATAGCCGAAGCTATCCTTTTTCACAT
1 CCTTTTCACATTCGATAGCCGAAGCTATCCCTTTTCACAT
75514184 GGTACACACA
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
58 38 0.41
59 54 0.59
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.33
Consensus pattern (58 bp):
CCTTTTCACATTCGATAGCCGAAGCTATCCCTTTTCACATTCGATAGCCGAAGCTATC
Found at i:75519136 original size:46 final size:46
Alignment explanation
Indices: 75518952--75519214 Score: 191
Period size: 46 Copynumber: 5.6 Consensus size: 46
75518942 GTCTATTGTG
* * * * **
75518952 AGCTAGTGTAAGA-CATGTTTGAGACATGCATCAGCCAC-ATTATGGG
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATC-GGCACGA-GATGTA
* * * *
75518998 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAAATG-A
1 AGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCA-CGAGATGTA
* * *
75519045 GAGCTAGTGTAAGA-CATGTCTAGGACATGCATCGGCCTCGTGATGTA
1 -AGCTAGTGTAAGACCATGTCTGGGACATGCATCGG-CACGAGATGTA
75519092 AGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGATGT-
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGC-ACGAGATGTA
* * * * *
75519137 -G-TCAGTGTAAGACCCTGTCTAGGACATGGCATTGACACGGATATGTGA
1 AGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGCAC-GAGATGT-A
*
75519185 GAGCTAATGTAAGACCATGTCTGGGACATG
1 -AGCTAGTGTAAGACCATGTCTGGGACATG
75519215 GTGTTGGCCT
Statistics
Matches: 176, Mismatches: 24, Indels: 31
0.76 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 10 0.06
45 15 0.09
46 75 0.43
47 30 0.17
48 20 0.11
49 2 0.01
50 22 0.12
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCACGAGATGTA
Found at i:75526283 original size:48 final size:46
Alignment explanation
Indices: 75526186--75526361 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
75526176 GGGCTATTGT
* * * *
75526186 GAGCTAGTGTAAGACATGTCTGGGATATGCATCAGCCAT--ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-GACATCGA-AACGA
* * *
75526232 GAGCTACTGTAAGACCACGTCTGGGACATGGCATCGACATTGAAACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATCGAAACGA
* * * **
75526280 GAGCTAGTGTGAGACATGTCTGGGACATGCATCGTCCTCGTGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACATCGAAACG-A
75526327 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGAC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGAC
75526362 TACGAGATGT
Statistics
Matches: 109, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
46 58 0.53
47 30 0.28
48 20 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACATCGAAACGA
Found at i:75527617 original size:21 final size:22
Alignment explanation
Indices: 75527578--75527618 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
75527568 TCAAATTGGT
75527578 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
75527600 CACATGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
75527619 GTTTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:75541901 original size:17 final size:18
Alignment explanation
Indices: 75541870--75541903 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75541860 CTTCTTCCAT
*
75541870 AAAAACCACACAAAAGAC
1 AAAAACCACAAAAAAGAC
75541888 AAAAACCA-AAAAAAGA
1 AAAAACCACAAAAAAGA
75541904 AGCCAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.74, C:0.21, G:0.06, T:0.00
Consensus pattern (18 bp):
AAAAACCACAAAAAAGAC
Found at i:75542370 original size:26 final size:25
Alignment explanation
Indices: 75542317--75542376 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 25
75542307 TTCGAAATCC
** *
75542317 TTTATGCTGATTTTTTTTTCATTCT
1 TTTATGCTGATTTTTAGTTAATTCT
75542342 TTTATGCTGAATTTTTAGTTAATT-T
1 TTTATGCTG-ATTTTTAGTTAATTCT
75542367 TTT-TGC-GATT
1 TTTATGCTGATT
75542377 ATTTCGTTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 3 0.10
23 1 0.03
24 3 0.10
25 13 0.42
26 11 0.35
ACGTcount: A:0.17, C:0.08, G:0.12, T:0.63
Consensus pattern (25 bp):
TTTATGCTGATTTTTAGTTAATTCT
Found at i:75546150 original size:41 final size:41
Alignment explanation
Indices: 75546104--75546183 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
75546094 ATGTATGTTT
* * * *
75546104 AACCAACTATAGTGTAGAATCACTCAATACAAAGTACAACA
1 AACCAACTACAATGTAAAACCACTCAATACAAAGTACAACA
*
75546145 AACCAATTACAATGTAAAACCACTCAATACAAAGTACAA
1 AACCAACTACAATGTAAAACCACTCAATACAAAGTACAA
75546184 TGGGCAAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.51, C:0.23, G:0.07, T:0.19
Consensus pattern (41 bp):
AACCAACTACAATGTAAAACCACTCAATACAAAGTACAACA
Found at i:75546155 original size:21 final size:20
Alignment explanation
Indices: 75546125--75546183 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
75546115 GTGTAGAATC
75546125 ACTCAATACAAAGTACAACAA
1 ACTCAATACAAAGTACAAC-A
* * *
75546146 AC-CAATTACAATGTAAAACC
1 ACTCAA-TACAAAGTACAACA
75546166 ACTCAATACAAAGTACAA
1 ACTCAATACAAAGTACAA
75546184 TGGGCAAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.54, C:0.24, G:0.05, T:0.17
Consensus pattern (20 bp):
ACTCAATACAAAGTACAACA
Found at i:75553478 original size:21 final size:21
Alignment explanation
Indices: 75553438--75553478 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
75553428 TGTTAAGAAA
* *
75553438 GAAGTTGCTACTGCAGAAGAT
1 GAAGTTGCTACTGAAAAAGAT
*
75553459 GAAGTTGTTACTGAAAAAGA
1 GAAGTTGCTACTGAAAAAGA
75553479 AATTGCTGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.27, T:0.24
Consensus pattern (21 bp):
GAAGTTGCTACTGAAAAAGAT
Found at i:75553503 original size:7 final size:6
Alignment explanation
Indices: 75553486--75553519 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
75553476 AGAAATTGCT
75553486 GAAAAA GAAAAA GAAAAA GAAAAAA GAAAAA GAA
1 GAAAAA GAAAAA GAAAAA G-AAAAA GAAAAA GAA
75553520 GATTCTGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:75553509 original size:13 final size:13
Alignment explanation
Indices: 75553486--75553519 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
75553476 AGAAATTGCT
75553486 GAAAAAG-AAAAA
1 GAAAAAGAAAAAA
75553498 GAAAAAGAAAAAA
1 GAAAAAGAAAAAA
75553511 GAAAAAGAA
1 GAAAAAGAA
75553520 GATTCTGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.33
13 14 0.67
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
GAAAAAGAAAAAA
Found at i:75556597 original size:20 final size:18
Alignment explanation
Indices: 75556557--75556591 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
75556547 TATTGAACCT
75556557 AAAATGATAATAGAGAGC
1 AAAATGATAATAGAGAGC
75556575 AAAATGATAATAGAGAG
1 AAAATGATAATAGAGAG
75556592 TACAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.23, T:0.17
Consensus pattern (18 bp):
AAAATGATAATAGAGAGC
Found at i:75558698 original size:30 final size:30
Alignment explanation
Indices: 75558645--75558721 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
75558635 TGGTTAACCC
* *
75558645 ATCCCTTTTTCGTAATTCAATAACAGAAGTT
1 ATCCC-TTTTCATAATTCAATAACAGAAGCT
* * *
75558676 ATCCCTTTTCATAGTTCGATAACCGAAGCT
1 ATCCCTTTTCATAATTCAATAACAGAAGCT
*
75558706 ATTCCTTTTCATAATT
1 ATCCCTTTTCATAATT
75558722 TGATGGTTGT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 34 0.87
31 5 0.13
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCAATAACAGAAGCT
Found at i:75558762 original size:29 final size:29
Alignment explanation
Indices: 75558709--75558869 Score: 137
Period size: 30 Copynumber: 5.4 Consensus size: 29
75558699 CGAAGCTATT
* *
75558709 CCTTTTCATAATTTGATGGTTGTCACCATC
1 CCTTTTCAT-AGTTGATGGTCGTCACCATC
*
75558739 CCTTTTCATTGTTGATGGTCGTCACCATC
1 CCTTTTCATAGTTGATGGTCGTCACCATC
* ** * *
75558768 CCTTTTCATAATCTGAAAGTTG-AAGCCATC
1 CCTTTTCATAGT-TGATGGTCGTCA-CCATC
* * *
75558798 CCTTTTCATAGTTCGATAGCCG-AAGCCATC
1 CCTTTTCATAGTT-GATGGTCGTCA-CCATC
* *
75558828 CTTTTTCATAGTTCGATGATCGTCACCATC
1 CCTTTTCATAGTT-GATGGTCGTCACCATC
75558858 CCTTTTCATAGT
1 CCTTTTCATAGT
75558870 CGATAGCCAA
Statistics
Matches: 108, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
29 29 0.27
30 78 0.72
31 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (29 bp):
CCTTTTCATAGTTGATGGTCGTCACCATC
Found at i:75558831 original size:59 final size:59
Alignment explanation
Indices: 75558676--75558893 Score: 178
Period size: 59 Copynumber: 3.7 Consensus size: 59
75558666 AACAGAAGTT
* * * ** *
75558676 ATCCCTTTTCATAGTTCGATAACCGAAGCTATTCCTTTTCATAATTTGATGGTTGTCACC
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCCA-TCCTTTTCATAATCTGAAAGTTGTAACC
* * * *
75558736 ATCCCTTTTCATTGTT-GATGGTCGTCA-CCATCCCTTTTCATAATCTGAAAGTTG-AAGCC
1 ATCCCTTTTCATAGTTCGATAGCCG-AAGCCAT-CCTTTTCATAATCTGAAAGTTGTAA-CC
* * * *
75558795 ATCCCTTTTCATAGTTCGATAGCCGAAGCCATCCTTTTTCATAGT-TCG-ATGATCGTCACC
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCCATCC-TTTTCATAATCT-GAAAG-TTGTAACC
* *
75558855 ATCCCTTTTCATAG-TCGATAGCCAAAGCTATCCCTTTTC
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCCAT-CCTTTTC
75558894 GTATTCGATA
Statistics
Matches: 128, Mismatches: 20, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
58 2 0.02
59 69 0.54
60 56 0.44
61 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.14, T:0.37
Consensus pattern (59 bp):
ATCCCTTTTCATAGTTCGATAGCCGAAGCCATCCTTTTCATAATCTGAAAGTTGTAACC
Found at i:75558868 original size:30 final size:31
Alignment explanation
Indices: 75558676--75558873 Score: 130
Period size: 30 Copynumber: 6.6 Consensus size: 31
75558666 AACAGAAGTT
* * *
75558676 ATCCCTTTTCATAGTTCGATAACCG-AAGCT
1 ATCCCTTTTCATAGTTCGATGATCGTAAGCC
* * * * * *
75558706 ATTCCTTTTCATAATTTGATGGTTGTCA-CC
1 ATCCCTTTTCATAGTTCGATGATCGTAAGCC
* * *
75558736 ATCCCTTTTCATTGTT-GATGGTCGTCA-CC
1 ATCCCTTTTCATAGTTCGATGATCGTAAGCC
* **
75558765 ATCCCTTTTCATA-ATC--TGAAAGTTGAAGCC
1 ATCCCTTTTCATAGTTCGATGATCG-T-AAGCC
*
75558795 ATCCCTTTTCATAGTTCGAT-AGCCG-AAGCC
1 ATCCCTTTTCATAGTTCGATGA-TCGTAAGCC
* *
75558825 ATCCTTTTTCATAGTTCGATGATCGTCA-CC
1 ATCCCTTTTCATAGTTCGATGATCGTAAGCC
75558855 ATCCCTTTTCATAG-TCGAT
1 ATCCCTTTTCATAGTTCGAT
75558874 AGCCAAAGCT
Statistics
Matches: 131, Mismatches: 26, Indels: 23
0.73 0.14 0.13
Matches are distributed among these distances:
27 3 0.02
28 2 0.02
29 30 0.23
30 88 0.67
31 5 0.04
32 1 0.01
33 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (31 bp):
ATCCCTTTTCATAGTTCGATGATCGTAAGCC
Found at i:75558887 original size:29 final size:30
Alignment explanation
Indices: 75558790--75558924 Score: 143
Period size: 30 Copynumber: 4.6 Consensus size: 30
75558780 CTGAAAGTTG
*
75558790 AAGCCATCCCTTTTCATAGTTCGATAGCCG
1 AAGCCATCCCTTTTCATAGTTCGATAGCCA
* * **
75558820 AAGCCATCCTTTTTCATAGTTCGATGATCGT
1 AAGCCATCCCTTTTCATAGTTCGAT-AGCCA
*
75558851 CA-CCATCCCTTTTCATAG-TCGATAGCCA
1 AAGCCATCCCTTTTCATAGTTCGATAGCCA
* *
75558879 AAGCTATCCCTTTTCGTA-TTCGATAGCCGA
1 AAGCCATCCCTTTTCATAGTTCGATAGCC-A
*
75558909 AA-CTATCCCTTTTCAT
1 AAGCCATCCCTTTTCAT
75558925 TTGTCGATGA
Statistics
Matches: 88, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
28 3 0.03
29 40 0.45
30 42 0.48
31 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (30 bp):
AAGCCATCCCTTTTCATAGTTCGATAGCCA
Found at i:75558888 original size:119 final size:119
Alignment explanation
Indices: 75558676--75558893 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 119
75558666 AACAGAAGTT
* * * *
75558676 ATCCCTTTTCATAGTTCGATAACCGAAGCTATTCCTTTTCATAATTTGATGGTTGTCACCATCCC
1 ATCCCTTTTCATAGTTCGATAACCGAAGCCATTCCTTTTCATAATTCGATGATCGTCACCATCCC
* * * ***
75558741 TTTTCATTGTTGATGGTCGTCACCATCCCTTTTCATAATCTGAAAGTTGAAGCC
66 TTTTCATAGTCGATAGTCCAAACCATCCCTTTTCATAATCTGAAAGTTGAAGCC
* *
75558795 ATCCCTTTTCATAGTTCGATAGCCGAAGCCA-TCCTTTTTCATAGTTCGATGATCGTCACCATCC
1 ATCCCTTTTCATAGTTCGATAACCGAAGCCATTCC-TTTTCATAATTCGATGATCGTCACCATCC
*
75558859 CTTTTCATAGTCGATAG-CCAAAGCTATCCCTTTTC
65 CTTTTCATAGTCGATAGTCCAAA-CCATCCCTTTTC
75558894 GTATTCGATA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
118 5 0.06
119 79 0.94
ACGTcount: A:0.22, C:0.27, G:0.14, T:0.37
Consensus pattern (119 bp):
ATCCCTTTTCATAGTTCGATAACCGAAGCCATTCCTTTTCATAATTCGATGATCGTCACCATCCC
TTTTCATAGTCGATAGTCCAAACCATCCCTTTTCATAATCTGAAAGTTGAAGCC
Found at i:75561010 original size:20 final size:20
Alignment explanation
Indices: 75560985--75561034 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
75560975 CGGTCACACG
75560985 GCCAAGCCGTACG-CTCGTAT
1 GCCAAGCCGTACGTC-CGTAT
*
75561005 GCCAAGCCATACGTCCGTAT
1 GCCAAGCCGTACGTCCGTAT
75561025 GCCAAGCCGT
1 GCCAAGCCGT
75561035 GTACCTTCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.22, C:0.36, G:0.24, T:0.18
Consensus pattern (20 bp):
GCCAAGCCGTACGTCCGTAT
Found at i:75562887 original size:19 final size:20
Alignment explanation
Indices: 75562863--75562900 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
75562853 ATTGTTTGGA
75562863 TATTGTATAA-AA-CTTATTT
1 TATTGT-TAATAATCTTATTT
75562882 TATTGTTAATAATCTTATT
1 TATTGTTAATAATCTTATT
75562901 ATTTTAAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 8 0.47
20 6 0.35
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (20 bp):
TATTGTTAATAATCTTATTT
Found at i:75562920 original size:30 final size:30
Alignment explanation
Indices: 75562884--75562946 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
75562874 ACTTATTTTA
* *
75562884 TTGTTAATAATCTTATTATTTTAAAGGCAT
1 TTGTTAATAATATTATTATTTCAAAGGCAT
** *
75562914 TTGTTAATTTTATTATTATTTCAGAGGCAT
1 TTGTTAATAATATTATTATTTCAAAGGCAT
75562944 TTG
1 TTG
75562947 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (30 bp):
TTGTTAATAATATTATTATTTCAAAGGCAT
Found at i:75574379 original size:17 final size:16
Alignment explanation
Indices: 75574354--75574385 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
75574344 GAGAAAATTA
75574354 AAAATAAAAGTAAAAT
1 AAAATAAAAGTAAAAT
75574370 AAAATAAAAAGTAAAA
1 AAAAT-AAAAGTAAAA
75574386 AAATGATGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (16 bp):
AAAATAAAAGTAAAAT
Found at i:75582463 original size:23 final size:23
Alignment explanation
Indices: 75582418--75582463 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
75582408 CAAATAAAAT
* * **
75582418 ACATTTCATACTAAAGCTTTTAA
1 ACATTTCATACCAAAACACTTAA
75582441 ACATTTCATACCAAAACACTTAA
1 ACATTTCATACCAAAACACTTAA
75582464 CTATTTTGTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.43, C:0.22, G:0.02, T:0.33
Consensus pattern (23 bp):
ACATTTCATACCAAAACACTTAA
Found at i:75585009 original size:19 final size:19
Alignment explanation
Indices: 75584985--75585042 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
75584975 ATCCAACCCC
*
75584985 CAAATATAGATACAAAATA
1 CAAATACAGATACAAAATA
* *
75585004 CAAATAGAGTATTCAAAAT-
1 CAAATACAG-ATACAAAATA
* *
75585023 CATATACAGATACAACATA
1 CAAATACAGATACAAAATA
75585042 C
1 C
75585043 TTATGTACAG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
18 7 0.23
19 16 0.52
20 8 0.26
ACGTcount: A:0.55, C:0.16, G:0.07, T:0.22
Consensus pattern (19 bp):
CAAATACAGATACAAAATA
Found at i:75601001 original size:44 final size:44
Alignment explanation
Indices: 75600939--75601026 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
75600929 TGATTACTAG
75600939 ATATATTAGCAGAATCACGAGCTTGAAGTTTAATCGCGTCATCT
1 ATATATTAGCAGAATCACGAGCTTGAAGTTTAATCGCGTCATCT
75600983 ATATATTAGCAGAATCACGAGCTTGAAGTTTAATCGCGTCATCT
1 ATATATTAGCAGAATCACGAGCTTGAAGTTTAATCGCGTCATCT
75601027 CCTACAAGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (44 bp):
ATATATTAGCAGAATCACGAGCTTGAAGTTTAATCGCGTCATCT
Found at i:75609486 original size:22 final size:22
Alignment explanation
Indices: 75609461--75609502 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
75609451 ACATTTTCCC
75609461 TTTTTGTT-TTATTTTTCCTTTA
1 TTTTTGTTCTT-TTTTTCCTTTA
75609483 TTTTTGTTCTTTTTTTCCTT
1 TTTTTGTTCTTTTTTTCCTT
75609503 CTCTTCTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.05, C:0.12, G:0.05, T:0.79
Consensus pattern (22 bp):
TTTTTGTTCTTTTTTTCCTTTA
Found at i:75624671 original size:21 final size:22
Alignment explanation
Indices: 75624638--75624681 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
75624628 TCGTGTCAAC
75624638 TAATTATTCTA-TTTTTTTATT
1 TAATTATTCTATTTTTTTTATT
* *
75624659 TAATTGTTTTATTTTTTTTATT
1 TAATTATTCTATTTTTTTTATT
75624681 T
1 T
75624682 GAGTTGAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (22 bp):
TAATTATTCTATTTTTTTTATT
Found at i:75625051 original size:42 final size:43
Alignment explanation
Indices: 75624982--75625127 Score: 176
Period size: 42 Copynumber: 3.5 Consensus size: 43
75624972 AATATTTTTT
* *
75624982 TAAAGGTCATGTTCTTTAGCAGC-TTTGTGAGAAAAGCGTCGC
1 TAAAGGTCATGTTCTATAGCAGCATTTGTGAGAAAAGCGTCAC
* * * *
75625024 TAAAGGTC-TATTCTATAG-TGACATTTGTG-GAAAAGCGCCAT
1 TAAAGGTCATGTTCTATAGCAG-CATTTGTGAGAAAAGCGTCAC
*
75625065 TAAAGGTCATGTTCTATAGCAGCGTTTGT-AGAAAAAGCGTCAC
1 TAAAGGTCATGTTCTATAGCAGCATTTGTGAG-AAAAGCGTCAC
75625108 TAAAGGTCATGTTCTATAGC
1 TAAAGGTCATGTTCTATAGC
75625128 GGCTTTTTTA
Statistics
Matches: 87, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
40 1 0.01
41 26 0.30
42 30 0.34
43 30 0.34
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGCAGCATTTGTGAGAAAAGCGTCAC
Found at i:75625115 original size:43 final size:41
Alignment explanation
Indices: 75624982--75625133 Score: 173
Period size: 43 Copynumber: 3.6 Consensus size: 41
75624972 AATATTTTTT
* *
75624982 TAAAGGTCATGTTCTTTAGCAGCTTTGTGAGAAAAGCGTCGC
1 TAAAGGTCATGTTCTATAGCAGCTTTGTGA-AAAAGCGTCAC
* * * * *
75625024 TAAAGGTC-TATTCTATAG-TGACATTTGTGGAAAAGCGCCAT
1 TAAAGGTCATGTTCTATAGCAG-C-TTTGTGAAAAAGCGTCAC
75625065 TAAAGGTCATGTTCTATAGCAGCGTTTGTAGAAAAAGCGTCAC
1 TAAAGGTCATGTTCTATAGCAGC-TTTGT-GAAAAAGCGTCAC
*
75625108 TAAAGGTCATGTTCTATAGCGGCTTT
1 TAAAGGTCATGTTCTATAGCAGCTTT
75625134 TTTACATAAA
Statistics
Matches: 91, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
40 1 0.01
41 25 0.27
42 32 0.35
43 33 0.36
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (41 bp):
TAAAGGTCATGTTCTATAGCAGCTTTGTGAAAAAGCGTCAC
Found at i:75633060 original size:28 final size:27
Alignment explanation
Indices: 75632992--75633077 Score: 77
Period size: 28 Copynumber: 3.1 Consensus size: 27
75632982 CAATACACAA
* * *
75632992 ATTAAAAATATAATAAAA-AGTGATTAT
1 ATTAAAAATAAAATAAAATA-TAAATAT
*
75633019 ATTAAAATTGAAAATAAAATATAAATAT
1 ATTAAAAAT-AAAATAAAATATAAATAT
*
75633047 GATTAAAAATAAAA-AAATATATATATAT
1 -ATTAAAAATAAAATAAA-ATATAAATAT
75633075 ATT
1 ATT
75633078 TAGTATATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
27 14 0.29
28 26 0.53
29 9 0.18
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.34
Consensus pattern (27 bp):
ATTAAAAATAAAATAAAATATAAATAT
Found at i:75641422 original size:26 final size:25
Alignment explanation
Indices: 75641393--75641454 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
75641383 AAAATTATTT
* *
75641393 TAAATTTAAATATTATTTAATTGTCA
1 TAAATTTAAATACTATTT-ATTGTAA
** *
75641419 TAAAGATAAATACTATTTATTTTAA
1 TAAATTTAAATACTATTTATTGTAA
*
75641444 TATATTTAAAT
1 TAAATTTAAAT
75641455 TTGTTATTTA
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (25 bp):
TAAATTTAAATACTATTTATTGTAA
Found at i:75643630 original size:18 final size:18
Alignment explanation
Indices: 75643585--75643631 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
75643575 TTTAAAAAAT
*
75643585 AATATAAAAT-TATTTAA
1 AATATAAAATAAATTTAA
* *
75643602 AATTATTAAATAAATTTTA
1 AA-TATAAAATAAATTTAA
75643621 AATATAAAATA
1 AATATAAAATA
75643632 TTCATTAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 2 0.08
18 15 0.62
19 7 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AATATAAAATAAATTTAA
Found at i:75644574 original size:15 final size:16
Alignment explanation
Indices: 75644554--75644584 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
75644544 TTATAAAAAT
75644554 ATTTT-AAAAAATTAA
1 ATTTTAAAAAAATTAA
75644569 ATTTTAAAAAAATTAA
1 ATTTTAAAAAAATTAA
75644585 TTAAATACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTTTAAAAAAATTAA
Found at i:75655552 original size:26 final size:26
Alignment explanation
Indices: 75655523--75655581 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
75655513 TATCCCTAAC
75655523 AAAATTTTAACGATTTTA-CCTCTAGT
1 AAAATTTTAACGATTTTACCCT-TAGT
* * *
75655549 AAAATTTTGATGATTTTGCCCTTAGT
1 AAAATTTTAACGATTTTACCCTTAGT
75655575 AAAATTT
1 AAAATTT
75655582 CGAGAAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (26 bp):
AAAATTTTAACGATTTTACCCTTAGT
Found at i:75658016 original size:18 final size:18
Alignment explanation
Indices: 75657992--75658037 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
75657982 TGTTCGGCAA
75657992 CAATCAATTATTCAATAAT
1 CAATCAATTATTCAAT-AT
*
75658011 -AATCAATTATTCAGTAT
1 CAATCAATTATTCAATAT
75658028 CAATCAATTA
1 CAATCAATTA
75658038 ATCGGTTATC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 2 0.08
18 23 0.92
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (18 bp):
CAATCAATTATTCAATAT
Found at i:75658109 original size:19 final size:19
Alignment explanation
Indices: 75658059--75658110 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
75658049 ATTAACAGTC
*
75658059 AATTATTCAGTAAAAATCA
1 AATTATTCAGTAACAATCA
* *
75658078 GA-TATAT-AGTAACAATTA
1 AATTAT-TCAGTAACAATCA
75658096 AATTATTCAGTAACA
1 AATTATTCAGTAACA
75658111 GTCGATCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
18 14 0.54
19 12 0.46
ACGTcount: A:0.50, C:0.10, G:0.08, T:0.33
Consensus pattern (19 bp):
AATTATTCAGTAACAATCA
Found at i:75658306 original size:53 final size:53
Alignment explanation
Indices: 75658249--75658351 Score: 154
Period size: 53 Copynumber: 1.9 Consensus size: 53
75658239 ACAGTAGCAA
*
75658249 TACGGTACACAAAGTACCTCATCAGAACAAATCC-AGAACGATAACAGTAATAG
1 TACGGTACACAAAGTACCTCATCAGAACAAATCCGA-AACAATAACAGTAATAG
* * *
75658302 TACGGTACACAGAGTACCTCATCAGAATAAATTCGAAACAATAACAGTAA
1 TACGGTACACAAAGTACCTCATCAGAACAAATCCGAAACAATAACAGTAA
75658352 CGGTAATAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 44 0.98
54 1 0.02
ACGTcount: A:0.46, C:0.21, G:0.15, T:0.18
Consensus pattern (53 bp):
TACGGTACACAAAGTACCTCATCAGAACAAATCCGAAACAATAACAGTAATAG
Found at i:75658408 original size:12 final size:12
Alignment explanation
Indices: 75658391--75658415 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75658381 AGTGCCGAAT
75658391 CGGTAACAGTAA
1 CGGTAACAGTAA
75658403 CGGTAACAGTAA
1 CGGTAACAGTAA
75658415 C
1 C
75658416 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:75664516 original size:59 final size:55
Alignment explanation
Indices: 75664444--75664577 Score: 148
Period size: 53 Copynumber: 2.4 Consensus size: 55
75664434 AAGCCGGAAT
*
75664444 AGTAACAGTAACAGTAGCAGTATGGTACACAGAATACCTCATCAGAACAAATTC-AGAAC
1 AGTAATAGTAACAGTA-CAGTA---TACACAGAATACCTCATCAGAACAAATTCGA-AAC
* * * *
75664503 GGTAATAGTAACAGTACA--ATACACAGAGTACCTCATCGGAACAAATTCGAAAT
1 AGTAATAGTAACAGTACAGTATACACAGAATACCTCATCAGAACAAATTCGAAAC
75664556 AGTAATAGTAACAGTAACAGTA
1 AGTAATAGTAACAGT-ACAGTA
75664578 GCAATATTCG
Statistics
Matches: 65, Mismatches: 6, Indels: 11
0.79 0.07 0.13
Matches are distributed among these distances:
53 43 0.66
54 4 0.06
56 2 0.03
58 2 0.03
59 14 0.22
ACGTcount: A:0.45, C:0.18, G:0.17, T:0.20
Consensus pattern (55 bp):
AGTAATAGTAACAGTACAGTATACACAGAATACCTCATCAGAACAAATTCGAAAC
Found at i:75664526 original size:53 final size:53
Alignment explanation
Indices: 75664469--75664571 Score: 154
Period size: 53 Copynumber: 1.9 Consensus size: 53
75664459 AGCAGTATGG
*
75664469 TACACAGAATACCTCATCAGAACAAATTC-AGAACGGTAATAGTAACAGTACAA
1 TACACAGAATACCTCATCAGAACAAATTCGA-AACAGTAATAGTAACAGTACAA
* * *
75664522 TACACAGAGTACCTCATCGGAACAAATTCGAAATAGTAATAGTAACAGTA
1 TACACAGAATACCTCATCAGAACAAATTCGAAACAGTAATAGTAACAGTA
75664572 ACAGTAGCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 44 0.98
54 1 0.02
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.20
Consensus pattern (53 bp):
TACACAGAATACCTCATCAGAACAAATTCGAAACAGTAATAGTAACAGTACAA
Found at i:75664623 original size:12 final size:12
Alignment explanation
Indices: 75664606--75664630 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75664596 AGTGCTGAAT
75664606 CGGTAACAGTAA
1 CGGTAACAGTAA
75664618 CGGTAACAGTAA
1 CGGTAACAGTAA
75664630 C
1 C
75664631 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:75666864 original size:22 final size:24
Alignment explanation
Indices: 75666822--75666866 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
75666812 TGTATTACAA
75666822 ATGTATGTATATTATTTATCACAT
1 ATGTATGTATATTATTTATCACAT
*
75666846 ATGTAT-TTTATT-TTTATCACA
1 ATGTATGTATATTATTTATCACA
75666867 CACTTGGCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 5 0.25
24 6 0.30
ACGTcount: A:0.31, C:0.09, G:0.07, T:0.53
Consensus pattern (24 bp):
ATGTATGTATATTATTTATCACAT
Found at i:75668338 original size:15 final size:16
Alignment explanation
Indices: 75668309--75668338 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75668299 CAAACATGCT
75668309 TTAACACATTATCAAA
1 TTAACACATTATCAAA
75668325 TTAACACA-TATCAA
1 TTAACACATTATCAA
75668339 GAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:75669505 original size:25 final size:25
Alignment explanation
Indices: 75669471--75669540 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
75669461 ATGTACATGT
75669471 ATGCTCACATGAGCTGTGAATCAGA
1 ATGCTCACATGAGCTGTGAATCAGA
*
75669496 ATGCTCACATGAGTTGTGAATCAGA
1 ATGCTCACATGAGCTGTGAATCAGA
75669521 ATGCTCACATGAGCTGTGAA
1 ATGCTCACATGAGCTGTGAA
75669541 AATGGGCCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (25 bp):
ATGCTCACATGAGCTGTGAATCAGA
Found at i:75669979 original size:13 final size:13
Alignment explanation
Indices: 75669961--75669990 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
75669951 TTGACCTAAA
75669961 TTAATAAATTAAT
1 TTAATAAATTAAT
*
75669974 TTAATATATTAAT
1 TTAATAAATTAAT
75669987 TTAA
1 TTAA
75669991 AAAGTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TTAATAAATTAAT
Found at i:75671114 original size:31 final size:31
Alignment explanation
Indices: 75671079--75671140 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
75671069 CCACATATTA
75671079 AACCCTCCATAGTGAAGTTAGCAGTGTAACC
1 AACCCTCCATAGTGAAGTTAGCAGTGTAACC
75671110 AACCCTCCATAGTGAAGTTAGCAGTGTAACC
1 AACCCTCCATAGTGAAGTTAGCAGTGTAACC
75671141 TTGCTTGACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (31 bp):
AACCCTCCATAGTGAAGTTAGCAGTGTAACC
Found at i:75685238 original size:13 final size:13
Alignment explanation
Indices: 75685199--75685239 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
75685189 CAGTATGAAA
75685199 ATACTGTCTAAAC
1 ATACTGTCTAAAC
* *
75685212 ATATTATCTAAAC
1 ATACTGTCTAAAC
*
75685225 ATACTGTCTGAAC
1 ATACTGTCTAAAC
75685238 AT
1 AT
75685240 TAAATTGAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34
Consensus pattern (13 bp):
ATACTGTCTAAAC
Found at i:75693000 original size:18 final size:19
Alignment explanation
Indices: 75692972--75693012 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
75692962 TTATCATAAT
75692972 AATTTATAATTAAATAAAA
1 AATTTATAATTAAATAAAA
* *
75692991 AATTTA-AATTAATTCAAA
1 AATTTATAATTAAATAAAA
75693009 AATT
1 AATT
75693013 AATATGCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (19 bp):
AATTTATAATTAAATAAAA
Found at i:75693075 original size:22 final size:21
Alignment explanation
Indices: 75693046--75693110 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
75693036 AAGAATTCTA
75693046 AAATAATAGGATACATATATT
1 AAATAATAGGATACATATATT
* * * *
75693067 AAATCAATA-AAGA-AT-TCTA
1 AAAT-AATAGGATACATATATT
75693086 AAATAATAGGATACATATATT
1 AAATAATAGGATACATATATT
75693107 AAAT
1 AAAT
75693111 CAATCTGCAA
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
18 4 0.12
19 8 0.25
20 4 0.12
21 12 0.38
22 4 0.12
ACGTcount: A:0.55, C:0.06, G:0.08, T:0.31
Consensus pattern (21 bp):
AAATAATAGGATACATATATT
Found at i:75693081 original size:40 final size:40
Alignment explanation
Indices: 75693035--75693114 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
75693025 TGAAAAAGAG
75693035 AAAGAATTCTAAAATAATAGGATACATATATTAAATCAAT
1 AAAGAATTCTAAAATAATAGGATACATATATTAAATCAAT
75693075 AAAGAATTCTAAAATAATAGGATACATATATTAAATCAAT
1 AAAGAATTCTAAAATAATAGGATACATATATTAAATCAAT
75693115 CTGCAAGCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.30
Consensus pattern (40 bp):
AAAGAATTCTAAAATAATAGGATACATATATTAAATCAAT
Found at i:75693505 original size:22 final size:23
Alignment explanation
Indices: 75693457--75693510 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
75693447 TTGAATCCTT
* *
75693457 TAAAATAATTATTTAAAATTAAA
1 TAAAATAATCATTTAAAATAAAA
*
75693480 -AAAATAATCATTT-AGATAAAA
1 TAAAATAATCATTTAAAATAAAA
75693501 TAAAAATAAT
1 T-AAAATAAT
75693511 AAAATAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 6 0.23
22 12 0.46
23 8 0.31
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (23 bp):
TAAAATAATCATTTAAAATAAAA
Found at i:75711581 original size:35 final size:35
Alignment explanation
Indices: 75711542--75711648 Score: 92
Period size: 35 Copynumber: 3.0 Consensus size: 35
75711532 GTTTTTAGGG
*
75711542 TTAGGGTTTTGCCAAAATAAGTTAGGATTTAGTGT
1 TTAGGGTTTTGCCAAAATAAGTTAGGATTTAGAGT
* ** * *
75711577 TTAGGTTTTTGTTAAAATGAGTTAGGGTTTAGAGTT
1 TTAGGGTTTTGCCAAAATAAGTTAGGATTTAGAG-T
* * *
75711613 TTAGTAGATTTT--AAAAATAAATTAGGATTTAGAGT
1 TTAG--GGTTTTGCCAAAATAAGTTAGGATTTAGAGT
75711648 T
1 T
75711649 ATTTTATAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
35 30 0.52
36 23 0.40
38 5 0.09
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (35 bp):
TTAGGGTTTTGCCAAAATAAGTTAGGATTTAGAGT
Found at i:75711738 original size:22 final size:23
Alignment explanation
Indices: 75711713--75711759 Score: 87
Period size: 22 Copynumber: 2.1 Consensus size: 23
75711703 ATTAGGGTTT
75711713 TTAGGGTTTTAAATAAATTA-AG
1 TTAGGGTTTTAAATAAATTAGAG
75711735 TTAGGGTTTTAAATAAATTAGAG
1 TTAGGGTTTTAAATAAATTAGAG
75711758 TT
1 TT
75711760 TTAGGTTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (23 bp):
TTAGGGTTTTAAATAAATTAGAG
Found at i:75711770 original size:31 final size:32
Alignment explanation
Indices: 75711735--75711794 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
75711725 ATAAATTAAG
75711735 TTAGGG-TTTTAAATAAATTAGAGTTTTAGGT
1 TTAGGGTTTTTAAATAAATTAGAGTTTTAGGT
*
75711766 TTAGGGTTTTTAAATAAATTAGTGTTTTA
1 TTAGGGTTTTTAAATAAATTAGAGTTTTA
75711795 AATAAGTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 6 0.22
32 21 0.78
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (32 bp):
TTAGGGTTTTTAAATAAATTAGAGTTTTAGGT
Found at i:75711792 original size:18 final size:17
Alignment explanation
Indices: 75711735--75711799 Score: 64
Period size: 17 Copynumber: 3.9 Consensus size: 17
75711725 ATAAATTAAG
75711735 TTAGGGTTTTAAATAAA
1 TTAGGGTTTTAAATAAA
* **
75711752 TTAGAGTTTTAGGT---
1 TTAGGGTTTTAAATAAA
75711766 TTAGGGTTTTTAAATAAA
1 TTAGGG-TTTTAAATAAA
*
75711784 TTAGTGTTTTAAATAA
1 TTAGGGTTTTAAATAA
75711800 GTTAAATTAG
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
14 5 0.14
15 6 0.16
17 21 0.57
18 5 0.14
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.46
Consensus pattern (17 bp):
TTAGGGTTTTAAATAAA
Found at i:75712203 original size:126 final size:126
Alignment explanation
Indices: 75711973--75712726 Score: 1080
Period size: 126 Copynumber: 6.0 Consensus size: 126
75711963 TTGTACCCTA
* * *
75711973 AAAAAATAATTTT-ATGAAGACGTTTCTGAACAAATAGTGTCAAGAACGCTTCAAGCAGAATGCA
1 AAAAAATAATTTTGA-GAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCA
* * * * * *
75712037 CTGTCAGCAAAATTACAGAAAAAAGCTCTCACGTGGACGCTCTTTTTCTACAGTACTTCATG
65 ATGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
** * *
75712099 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACGCTTTAAGCAGGATGCAC
1 AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAA
* * * *
75712164 TATCTGCAAAATTACAT-AAAAAAGCTCCCACGTGAACGCTCTTTTTCTACAGTAGTTCCTG
66 TGTCAGCAAAATTTC-TGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* * * * * * *
75712225 AAAAAATAATTTTGAGAAGAGGTTTTTGAACAAATAATGTCAAAAATGTTTCTAGCAAGATGCAA
1 AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAA
* * *
75712290 TGTCAGCAAAATTTCAGAAAAAAGCTCCCATGTGGACGCTCTTTTTCTACAGTAGTTCTTG
66 TGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
*
75712351 AAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGCAGGATGCA
1 -AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCA
* * * *
75712416 ATGTCAGCAAAATTTCTGAAAAAAGCTCCTACATGGATGCTCTTTTTCTATAGTAGTTCCTG
65 ATGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
*
75712478 AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAA
1 AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAA
* * * * *
75712543 TGTCAACAAAATTTCTAAAAAAAGCTCACACGTGGACGCTCTTTTTCTAGAGTTGTTCCTG
66 TGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* * *
75712604 AAAAAATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTCAAAATCGCTTCAAGTAGGATGCAA
1 AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAA
**
75712669 TGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTAATCTACAGTAGTTC
66 TGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTC
75712727 ATGATTGACC
Statistics
Matches: 560, Mismatches: 64, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
126 448 0.80
127 112 0.20
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (126 bp):
AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAA
TGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
Found at i:75712443 original size:253 final size:252
Alignment explanation
Indices: 75711973--75712726 Score: 1111
Period size: 253 Copynumber: 3.0 Consensus size: 252
75711963 TTGTACCCTA
*
75711973 AAAAAATAATTTT-ATGAAGACGTTTCTGAACAAATAGTGTCAAGAACGCTTCAAGC-AGAATGC
1 AAAAAATAATTTTGA-GAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAG-ATGC
* * * *
75712036 ACTGTCAGCAAAATTACAGAAAAAAGCTCTCACGTGGACGCTCTTTTTCTACAGTACTTCATGAA
64 AATGTCAGCAAAATTTCAGAAAAAAGCTCACACGTGGACGCTCTTTTTCTACAGTAGTTCATGAA
** * *
75712101 AAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACGCTTTAAGCAGGATGCACTA
129 AAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGCAGGATGCAATG
* * *
75712166 TCTGCAAAATTACAT-AAAAAAGCTCCCACGTGAACGCTCTTTTTCTACAGTAGTTCCTG
194 TCAGCAAAATTTC-TGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* * * * * *
75712225 AAAAAATAATTTTGAGAAGAGGTTTTTGAACAAATAATGTCAAAAATGTTTCTAGCAAGATGCAA
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAA
* * *
75712290 TGTCAGCAAAATTTCAGAAAAAAGCTCCCATGTGGACGCTCTTTTTCTACAGTAGTTCTTGAAAA
66 TGTCAGCAAAATTTCAGAAAAAAGCTCACACGTGGACGCTCTTTTTCTACAGTAGTTCATG-AAA
75712355 AAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGCAGGATGCAATGT
130 AAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGCAGGATGCAATGT
* * * *
75712420 CAGCAAAATTTCTGAAAAAAGCTCCTACATGGATGCTCTTTTTCTATAGTAGTTCCTG
195 CAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
*
75712478 AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAA
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAA
* * * *
75712543 TGTCAACAAAATTTCTA-AAAAAAGCTCACACGTGGACGCTCTTTTTCTAGAGTTGTTCCTGAAA
66 TGTCAGCAAAATTTC-AGAAAAAAGCTCACACGTGGACGCTCTTTTTCTACAGTAGTTCATGAAA
* * * *
75712607 AAATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTCAAAATCGCTTCAAGTAGGATGCAATGT
130 AAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGCAGGATGCAATGT
**
75712672 CAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTAATCTACAGTAGTTC
195 CAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTC
75712727 ATGATTGACC
Statistics
Matches: 451, Mismatches: 46, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
252 222 0.49
253 228 0.51
254 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (252 bp):
AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAA
TGTCAGCAAAATTTCAGAAAAAAGCTCACACGTGGACGCTCTTTTTCTACAGTAGTTCATGAAAA
AATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGCAGGATGCAATGTC
AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
Found at i:75712671 original size:379 final size:379
Alignment explanation
Indices: 75711972--75712726 Score: 1131
Period size: 379 Copynumber: 2.0 Consensus size: 379
75711962 TTTGTACCCT
*
75711972 AAAAAAATAATTTTATGAAGACGTTTCTGAACAAATAGTGTCAAGAACGCTTCAAGCAGAATGCA
1 AAAAAAATAATTTTATGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGAATGCA
* *
75712037 CTGTCAGCAAAATTACAGAAAAAAGCTCTCACGTGGACGCTCTTTTTCTACAGTACTTCATGAAA
66 ATGTCAGCAAAATTACAGAAAAAAGCTCTCACATGGACGCTCTTTTTCTACAGTACTTCATGAAA
* * *
75712102 AAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACGCTTTAAGCAGGATGCACTAT
131 AAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAATAT
** *
75712167 CTGCAAAATTACATAAAAAAGCTCCCACGTGAACGCTCTTTTTCTACAGTAGTTCCTGAAAAAAT
196 CAACAAAATTACATAAAAAAGCTCACACGTGAACGCTCTTTTTCTACAGTAGTTCCTGAAAAAAT
* *
75712232 AATTTTGAGAAGAGGTTTTTGAACAAATAATGTCAAAAATGTTTCTAGCAAGATGCAATGTCAGC
261 AATTTTGAGAAGAGGTTTTTGAACAAATAATGTCAAAAATGCTTCAAGCAAGATGCAATGTCAGC
* **
75712297 AAAATTTCAGAAAAAAGCTCCCATGTGGACGCTCTTTTTCTACAGTAGTTCTTG
326 AAAATTTCAGAAAAAAGCTCCCACGTGGACGCTCTTAATCTACAGTAGTTCTTG
* * *
75712351 AAAAAAATAATTTTGA-GAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGCAGGATGC
1 AAAAAAATAATTTT-ATGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGAATGC
* * * * * *
75712415 AATGTCAGCAAAATTTCTGAAAAAAGCTC-CTACATGGATGCTCTTTTTCTATAGTAGTTCCTGA
65 AATGTCAGCAAAATTACAGAAAAAAGCTCTC-ACATGGACGCTCTTTTTCTACAGTACTTCATGA
**
75712479 AAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAAT
129 AAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAAT
* * * * *
75712544 GTCAACAAAATTTC-TAAAAAAAGCTCACACGTGGACGCTCTTTTTCTAGAGTTGTTCCTGAAAA
194 ATCAACAAAATTACAT-AAAAAAGCTCACACGTGAACGCTCTTTTTCTACAGTAGTTCCTGAAAA
* * * *
75712608 AATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTC-AAAATCGCTTCAAGTAGGATGCAATGT
258 AATAATTTTGAGAAGAGGTTTTTGAACAAATAATGTCAAAAAT-GCTTCAAGCAAGATGCAATGT
*
75712672 CAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTAATCTACAGTAGTTC
322 CAGCAAAATTTCAGAAAAAAGCTCCCACGTGGACGCTCTTAATCTACAGTAGTTC
75712727 ATGATTGACC
Statistics
Matches: 337, Mismatches: 35, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
378 7 0.02
379 329 0.98
380 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (379 bp):
AAAAAAATAATTTTATGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGAATGCA
ATGTCAGCAAAATTACAGAAAAAAGCTCTCACATGGACGCTCTTTTTCTACAGTACTTCATGAAA
AAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAATAT
CAACAAAATTACATAAAAAAGCTCACACGTGAACGCTCTTTTTCTACAGTAGTTCCTGAAAAAAT
AATTTTGAGAAGAGGTTTTTGAACAAATAATGTCAAAAATGCTTCAAGCAAGATGCAATGTCAGC
AAAATTTCAGAAAAAAGCTCCCACGTGGACGCTCTTAATCTACAGTAGTTCTTG
Found at i:75716219 original size:18 final size:18
Alignment explanation
Indices: 75716178--75716220 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
75716168 GACTGGAAAA
* *
75716178 AAGAAACATATAAGGGTT
1 AAGATACATATAAGGGCT
75716196 AAGATACATATAAGGGCT
1 AAGATACATATAAGGGCT
*
75716214 AGGATAC
1 AAGATAC
75716221 GCACCTAGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.47, C:0.09, G:0.23, T:0.21
Consensus pattern (18 bp):
AAGATACATATAAGGGCT
Found at i:75718002 original size:21 final size:21
Alignment explanation
Indices: 75717969--75718012 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
75717959 TATAAAGAGC
*
75717969 TTTGAGAAATTTAATGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
** *
75717990 TTTGAGAGCTTTAGGGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
75718011 TT
1 TT
75718013 GTAGAGATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.25, T:0.34
Consensus pattern (21 bp):
TTTGAGAAATTTAAGGAGAAA
Found at i:75718776 original size:10 final size:10
Alignment explanation
Indices: 75718757--75718788 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
75718747 ATTATAATAT
75718757 TATT-AAAAA
1 TATTAAAAAA
75718766 TATTAAAAAA
1 TATTAAAAAA
75718776 TA-TAAAAAA
1 TATTAAAAAA
75718785 TATT
1 TATT
75718789 TTTTAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 13 0.62
10 8 0.38
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (10 bp):
TATTAAAAAA
Found at i:75727328 original size:10 final size:10
Alignment explanation
Indices: 75727313--75727337 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
75727303 ATTGACAAAA
75727313 TAAAATATTT
1 TAAAATATTT
75727323 TAAAATATTT
1 TAAAATATTT
75727333 TAAAA
1 TAAAA
75727338 ATTAAAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TAAAATATTT
Found at i:75728521 original size:2 final size:2
Alignment explanation
Indices: 75728509--75728542 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
75728499 ACTCTTGTAA
* *
75728509 CT CT TT CT CT CT CT TT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
75728543 TATCCCTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (2 bp):
CT
Found at i:75728524 original size:10 final size:10
Alignment explanation
Indices: 75728509--75728543 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
75728499 ACTCTTGTAA
75728509 CTCTTTCTCT
1 CTCTTTCTCT
75728519 CTCTTTCTCT
1 CTCTTTCTCT
*
75728529 CTCTCTCTCT
1 CTCTTTCTCT
75728539 CTCTT
1 CTCTT
75728544 ATCCCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (10 bp):
CTCTTTCTCT
Found at i:75733115 original size:41 final size:41
Alignment explanation
Indices: 75733058--75733141 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
75733048 AAATTATGTA
*
75733058 AAATTAATCTAGATGCAATGATCCCTAATGTGATTTAGCCT
1 AAATTAATCTACATGCAATGATCCCTAATGTGATTTAGCCT
75733099 AAATTAATCTACATGCAATGATCCCTAATGTGATTTAGCCT
1 AAATTAATCTACATGCAATGATCCCTAATGTGATTTAGCCT
75733140 AA
1 AA
75733142 CATGCAACTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (41 bp):
AAATTAATCTACATGCAATGATCCCTAATGTGATTTAGCCT
Found at i:75737552 original size:46 final size:45
Alignment explanation
Indices: 75737476--75737567 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 45
75737466 AATGATCAAT
*
75737476 TGCTAAAGTAAGGGAATGTGAGAGTGGGAGTGGCCACTAGGCAAA
1 TGCTAAAGTAAGGGAATGTGAGAGTGGGAGTGACCACTAGGCAAA
* *
75737521 TGCTAAAGTAAGGGAAATGTGGGAGTGGGAGTGACCATTAGGCAAA
1 TGCTAAAGTAAGGG-AATGTGAGAGTGGGAGTGACCACTAGGCAAA
75737567 T
1 T
75737568 TTCCCAATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
45 14 0.33
46 29 0.67
ACGTcount: A:0.34, C:0.10, G:0.37, T:0.20
Consensus pattern (45 bp):
TGCTAAAGTAAGGGAATGTGAGAGTGGGAGTGACCACTAGGCAAA
Found at i:75753095 original size:11 final size:11
Alignment explanation
Indices: 75753063--75753106 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
75753053 ATCTTCTCGA
75753063 TTTGG-TCCTT
1 TTTGGCTCCTT
*
75753073 TTTGTC-CCTT
1 TTTGGCTCCTT
*
75753083 TTTGGCTCGTT
1 TTTGGCTCCTT
75753094 TTTGGCTCCTT
1 TTTGGCTCCTT
75753105 TT
1 TT
75753107 GACTCTTGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
10 13 0.46
11 15 0.54
ACGTcount: A:0.00, C:0.23, G:0.18, T:0.59
Consensus pattern (11 bp):
TTTGGCTCCTT
Found at i:75760529 original size:39 final size:39
Alignment explanation
Indices: 75760474--75760552 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
75760464 GGTAAACAAC
75760474 ACCCGATTAAAACCTTATTTTGTTGAGATTGACAGCAGG
1 ACCCGATTAAAACCTTATTTTGTTGAGATTGACAGCAGG
* *
75760513 ACCCGATTAAACCCTTATTTTGTTGAGTTTGACAGCAGG
1 ACCCGATTAAAACCTTATTTTGTTGAGATTGACAGCAGG
75760552 A
1 A
75760553 ATGAGAAGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (39 bp):
ACCCGATTAAAACCTTATTTTGTTGAGATTGACAGCAGG
Found at i:75762104 original size:27 final size:26
Alignment explanation
Indices: 75762056--75762115 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
75762046 GCGAGGCTGC
*
75762056 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
75762083 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
75762109 CAAATAT
1 CAGATAT
75762116 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:75762829 original size:26 final size:27
Alignment explanation
Indices: 75762800--75762853 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
75762790 TCACACAAGT
*
75762800 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
75762826 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
75762853 T
1 T
75762854 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:75762884 original size:27 final size:27
Alignment explanation
Indices: 75762854--75763026 Score: 220
Period size: 27 Copynumber: 6.4 Consensus size: 27
75762844 GGGGCAAAAT
* *
75762854 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
75762881 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
75762908 GATATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
75762935 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
75762962 GATAATTCTACCCTACAAGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
75762989 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
75763016 GGTAATTCTAC
1 GGTAATTCTAC
75763027 AACTTATCCA
Statistics
Matches: 123, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:75762900 original size:54 final size:54
Alignment explanation
Indices: 75762856--75763022 Score: 253
Period size: 54 Copynumber: 3.1 Consensus size: 54
75762846 GGCAAAATGG
* *
75762856 TAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGA
1 TAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* *
75762910 TATTTTTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCGA
1 TAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* * ** *
75762964 TAATTCTACCCTACAAGGGCATTTCAATAATTCTACCCTACAGGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
75763018 TAATT
1 TAATT
75763023 CTACAACTTA
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 102 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (54 bp):
TAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
Found at i:75769027 original size:39 final size:41
Alignment explanation
Indices: 75768958--75769096 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 41
75768948 CGTTCAAGTG
* * * *
75768958 CCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AATA
1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATA
* * *
75768997 CCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATA
* * * * * **
75769037 CCTTCGGGACTTAACCCGGAAT-TAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATA
75769077 CCTTCGGGACTTAACCCGGA
1 CCTTCGGGACTTAACCCGGA
75769097 ATTAATAACT
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 26 0.31
40 59 0.69
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATA
Found at i:75769107 original size:80 final size:80
Alignment explanation
Indices: 75768997--75769176 Score: 226
Period size: 80 Copynumber: 2.2 Consensus size: 80
75768987 TCATACAATA
* *
75768997 CCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-ATT
1 CCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATA-T
*
75769060 AGT-A-TCTCGCACAAAGG
64 AGTCACT-TAGCACAAA-G
**
75769077 CCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATA
1 CCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCCGGATATA
75769141 GTCACTTAGCACAAAG
65 GTCACTTAGCACAAAG
*
75769157 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
75769177 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 6, Indels: 10
0.85 0.06 0.10
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAG
TCACTTAGCACAAAG
Found at i:75769136 original size:40 final size:40
Alignment explanation
Indices: 75768997--75769176 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
75768987 TCATACAATA
* *
75768997 CCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATG
* * *
75769037 CCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATG
75769077 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATG
** * * *
75769117 CCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACAAATG
*
75769157 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
75769177 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
39 8 0.07
40 101 0.84
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATG
Found at i:75775096 original size:17 final size:17
Alignment explanation
Indices: 75775074--75775118 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
75775064 ATCGAGATTG
75775074 ACTTGAAAAATTACCTA
1 ACTTGAAAAATTACCTA
75775091 ACTTGAAAAATTACCTA
1 ACTTGAAAAATTACCTA
*
75775108 ACTAGAAAAAT
1 ACTTGAAAAAT
75775119 AGCTAGTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.51, C:0.16, G:0.07, T:0.27
Consensus pattern (17 bp):
ACTTGAAAAATTACCTA
Found at i:75781324 original size:19 final size:19
Alignment explanation
Indices: 75781296--75781333 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
75781286 TGTATCTTAA
75781296 GCTTCACCTTATTTCTCTT
1 GCTTCACCTTATTTCTCTT
*
75781315 GCTTCGCCTTATTTCTCTT
1 GCTTCACCTTATTTCTCTT
75781334 TGGTTCCTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.08, C:0.32, G:0.08, T:0.53
Consensus pattern (19 bp):
GCTTCACCTTATTTCTCTT
Found at i:75781468 original size:5 final size:5
Alignment explanation
Indices: 75781458--75781482 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
75781448 AATAATAAAA
75781458 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
75781483 GCAAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:75790540 original size:20 final size:20
Alignment explanation
Indices: 75790515--75790581 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
75790505 ATTTTGATAT
*
75790515 ACATGAT-TGATATGACATGC
1 ACATGATATG-TATGATATGC
*
75790535 ACATGATCTGTATGATATGC
1 ACATGATATGTATGATATGC
*
75790555 ACATGTTATGTATGATATGC
1 ACATGATATGTATGATATGC
75790575 ACATGAT
1 ACATGAT
75790582 GTATTCATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 40 0.95
21 2 0.05
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:75790939 original size:31 final size:31
Alignment explanation
Indices: 75790904--75790967 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
75790894 CGTTTACAGT
*
75790904 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
*
75790935 AAAGGCTTCAGCCCAGTATTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
75790966 AA
1 AA
75790968 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:75801454 original size:42 final size:43
Alignment explanation
Indices: 75801339--75801497 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
75801329 GGAATTAAGA
* * *
75801339 AATCGGAGCTCATTGAGCGGTCCGAGTTCATGATATATGTGAG
1 AATCCGAGCTCATTGAGTGGTCCAAGTTCATGATATATGTGAG
* **
75801382 AATCCGAACTTGTTGAGTGGTCCAAGTTCATGATATATGTG-G
1 AATCCGAGCTCATTGAGTGGTCCAAGTTCATGATATATGTGAG
* * * * ** *
75801424 CATCTGAGCTCATTGAGTGGTCCAATTTCATTATGGATGCGAG
1 AATCCGAGCTCATTGAGTGGTCCAAGTTCATGATATATGTGAG
* * * *
75801467 CATCCAAGCTCGTTGAGTGGTCCGAGTTCAT
1 AATCCGAGCTCATTGAGTGGTCCAAGTTCAT
75801498 AATGGATGCG
Statistics
Matches: 94, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 32 0.34
43 62 0.66
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
AATCCGAGCTCATTGAGTGGTCCAAGTTCATGATATATGTGAG
Found at i:75817249 original size:28 final size:28
Alignment explanation
Indices: 75817212--75817268 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
75817202 TGCTGAAATA
75817212 TTATGTACTATCCATTACTTGTTCTTAT
1 TTATGTACTATCCATTACTTGTTCTTAT
75817240 TTATGTACTATCCATTACTTGTTCTTAT
1 TTATGTACTATCCATTACTTGTTCTTAT
75817268 T
1 T
75817269 CTTTAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.18, G:0.07, T:0.54
Consensus pattern (28 bp):
TTATGTACTATCCATTACTTGTTCTTAT
Found at i:75823854 original size:105 final size:105
Alignment explanation
Indices: 75823672--75823868 Score: 331
Period size: 105 Copynumber: 1.9 Consensus size: 105
75823662 TTTGGTCGGA
* * * *
75823672 CCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACTACATTGACCTTTGT
1 CCAATTAGTACAGTTTATTAGTAAAAGTCTCCCAAGTTACAGGGATCGACTACACTGACCTTTGC
*
75823737 GCATTACGACTTGGATATCTCCCTGCAAAGAGTTTCTGTG
66 CCATTACGACTTGGATATCTCCCTGCAAAGAGTTTCTGTG
* *
75823777 CCAATTAGTACAGTTTATTAGTAAAAGTCTCCCAAGTTGCAGGGGTCGACTACACTGACCTTTGC
1 CCAATTAGTACAGTTTATTAGTAAAAGTCTCCCAAGTTACAGGGATCGACTACACTGACCTTTGC
75823842 CCATTACGACTTGGATATCTCCCTGCA
66 CCATTACGACTTGGATATCTCCCTGCA
75823869 CGGGGCTTCA
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
105 85 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (105 bp):
CCAATTAGTACAGTTTATTAGTAAAAGTCTCCCAAGTTACAGGGATCGACTACACTGACCTTTGC
CCATTACGACTTGGATATCTCCCTGCAAAGAGTTTCTGTG
Found at i:75828274 original size:64 final size:64
Alignment explanation
Indices: 75828070--75828315 Score: 264
Period size: 64 Copynumber: 3.8 Consensus size: 64
75828060 CATAATTTTG
* * * * * * * *
75828070 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCATCTATGTGACCTAGC--CATTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACA-TATATCCCGT
75828132 A
64 A
* * * * * * * * *
75828133 GCTCTCTTGTTTACATGGTGTCCTTCACTTGTAACCACACATGCAACCTAGCTACATTTATCTCG
1 GCTCTCTTGTCTACATGGTGTAC-ACA-TAGT-ATCACCCATGCGACCTAGCTACATATATCCCG
75828198 TA
63 TA
75828200 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATATATCCCGTA
1 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATATATCCCGTA
*
75828264 GCTCTTTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTAC
1 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTAC
75828316 CTCATAATGT
Statistics
Matches: 156, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
63 19 0.12
64 81 0.52
65 6 0.04
66 16 0.10
67 32 0.21
68 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:75828826 original size:43 final size:43
Alignment explanation
Indices: 75828765--75828849 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
75828755 TACGACTTGG
75828765 ATATCTCCCTGCAAAGAGTTTCAAAACTGATGCCGTTTGTTTA
1 ATATCTCCCTGCAAAGAGTTTCAAAACTGATGCCGTTTGTTTA
* *
75828808 ATATCTCCCTGCACAGAGTTTCAACACTGATGCCGTTTGTTT
1 ATATCTCCCTGCAAAGAGTTTCAAAACTGATGCCGTTTGTTT
75828850 CTATAGAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (43 bp):
ATATCTCCCTGCAAAGAGTTTCAAAACTGATGCCGTTTGTTTA
Found at i:75829922 original size:28 final size:27
Alignment explanation
Indices: 75829859--75830010 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
75829849 ATATTAAGTC
* * *
75829859 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
75829886 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
75829914 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
75829941 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
75829969 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
75829996 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75830011 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:75829943 original size:55 final size:55
Alignment explanation
Indices: 75829859--75830010 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
75829849 ATATTAAGTC
* * *
75829859 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
75829914 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
75829969 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
75830011 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:75837032 original size:28 final size:27
Alignment explanation
Indices: 75836969--75837120 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
75836959 ATATTAAGTC
* * *
75836969 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
75836996 TGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
75837024 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
75837051 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
75837079 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
75837106 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75837121 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 65 0.56
28 52 0.44
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:75837056 original size:55 final size:55
Alignment explanation
Indices: 75836969--75837120 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
75836959 ATATTAAGTC
* * * *
75836969 CGCACACTCAGTGCTATATAATCAACTTGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
75837024 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
75837079 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
75837121 GCACAATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:75838343 original size:30 final size:30
Alignment explanation
Indices: 75838309--75838369 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
75838299 CCCTTAACTC
*
75838309 AAACTTTTGAAAAATTACATTTTTGCCCCT
1 AAACTTTTGAAAAATTACACTTTTGCCCCT
* * *
75838339 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACACTTTTGCCCCT
75838369 A
1 A
75838370 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACACTTTTGCCCCT
Found at i:75841922 original size:23 final size:23
Alignment explanation
Indices: 75841896--75842002 Score: 153
Period size: 23 Copynumber: 4.7 Consensus size: 23
75841886 CACAAAGTAC
75841896 GCCACAAAGGCTTTATAGAATAT
1 GCCACAAAGGCTTTATAGAATAT
* * *
75841919 GCCACAAAAGCTTTACAAAATAT
1 GCCACAAAGGCTTTATAGAATAT
*
75841942 GCCACAAAGGATTTATAGAATAT
1 GCCACAAAGGCTTTATAGAATAT
*
75841965 GCCACAAAGGCTTTACT-GAATAC
1 GCCACAAAGGCTTTA-TAGAATAT
75841988 GCCACAAAGGCTTTA
1 GCCACAAAGGCTTTA
75842003 CAAAACATTA
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
23 73 0.99
24 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (23 bp):
GCCACAAAGGCTTTATAGAATAT
Found at i:75841937 original size:46 final size:45
Alignment explanation
Indices: 75841868--75842002 Score: 171
Period size: 46 Copynumber: 2.9 Consensus size: 45
75841858 GGCATTACAA
* * * *
75841868 AATATGCCACACAATCATCACAAAGTACGCCACAAAGGCTTTATAG
1 AATATGCCACAAAAGCTTTACAAA-TACGCCACAAAGGCTTTATAG
* *
75841914 AATATGCCACAAAAGCTTTACAAAATATGCCACAAAGGATTTATAG
1 AATATGCCACAAAAGCTTTAC-AAATACGCCACAAAGGCTTTATAG
* *
75841960 AATATGCCACAAAGGCTTTACTGAATACGCCACAAAGGCTTTA
1 AATATGCCACAAAAGCTTTAC-AAATACGCCACAAAGGCTTTA
75842003 CAAAACATTA
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 74 0.96
47 3 0.04
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.22
Consensus pattern (45 bp):
AATATGCCACAAAAGCTTTACAAATACGCCACAAAGGCTTTATAG
Found at i:75849002 original size:37 final size:37
Alignment explanation
Indices: 75848961--75849089 Score: 125
Period size: 37 Copynumber: 3.5 Consensus size: 37
75848951 TTCTCCTCAT
* * * *
75848961 TTGAGTTTCACTT-AGTATAATAATAAGATTTGCTCGA
1 TTGAGCTTCA-TTCAGTATAACAATAAGATCTGATCGA
*
75848998 TTGAGCTTCATTCAGTATAACAGTAAGATCTGATCGA
1 TTGAGCTTCATTCAGTATAACAATAAGATCTGATCGA
* * * ** * *
75849035 TTGAGCTTTATTTAGTACAACGGTAAGATTTGACCCGA
1 TTGAGCTTCATTCAGTATAACAATAAGATCTGA-TCGA
75849073 TTGAGCTTCATTCAGTA
1 TTGAGCTTCATTCAGTA
75849090 GGACCAATAG
Statistics
Matches: 77, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
36 2 0.03
37 57 0.74
38 18 0.23
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (37 bp):
TTGAGCTTCATTCAGTATAACAATAAGATCTGATCGA
Found at i:75849079 original size:38 final size:38
Alignment explanation
Indices: 75848984--75849089 Score: 144
Period size: 37 Copynumber: 2.8 Consensus size: 38
75848974 AGTATAATAA
*
75848984 TAAGATTTG-CTCGATTGAGCTTCATTCAGTATAACAG
1 TAAGATTTGACTCGATTGAGCTTCATTCAGTACAACAG
* * * *
75849021 TAAGATCTGA-TCGATTGAGCTTTATTTAGTACAACGG
1 TAAGATTTGACTCGATTGAGCTTCATTCAGTACAACAG
*
75849058 TAAGATTTGACCCGATTGAGCTTCATTCAGTA
1 TAAGATTTGACTCGATTGAGCTTCATTCAGTA
75849090 GGACCAATAG
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
37 40 0.69
38 18 0.31
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (38 bp):
TAAGATTTGACTCGATTGAGCTTCATTCAGTACAACAG
Found at i:75849938 original size:22 final size:23
Alignment explanation
Indices: 75849909--75849964 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
75849899 TTTCAACTTT
* *
75849909 CTTAATTAAGCTTTAA-TAAATCA
1 CTTAATTAAGC-CTAATTAAACCA
75849932 -TTAATTAAGCCTAATTAAACCA
1 CTTAATTAAGCCTAATTAAACCA
75849954 CTTAATTAAGC
1 CTTAATTAAGC
75849965 ATAACCTCGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 3 0.10
22 16 0.55
23 10 0.34
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (23 bp):
CTTAATTAAGCCTAATTAAACCA
Found at i:75852022 original size:23 final size:24
Alignment explanation
Indices: 75851996--75852043 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
75851986 ATTCGCAGAT
75851996 ATGTAGGTTGTGGAT-AAACCACC
1 ATGTAGGTTGTGGATGAAACCACC
*
75852019 ATGTAGGTTGTGGATGAAGCCACC
1 ATGTAGGTTGTGGATGAAACCACC
75852043 A
1 A
75852044 ATTCTTTCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (24 bp):
ATGTAGGTTGTGGATGAAACCACC
Found at i:75854359 original size:22 final size:22
Alignment explanation
Indices: 75854333--75854377 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
75854323 TTTTAATAAA
*
75854333 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATACTCCT
* *
75854355 AAAATATTTACAGAATACTCCT
1 AAAATATCTACAAAATACTCCT
75854377 A
1 A
75854378 CACTCCCCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATATCTACAAAATACTCCT
Found at i:75858957 original size:22 final size:22
Alignment explanation
Indices: 75858931--75858975 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
75858921 TTTTAATAAA
75858931 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
75858953 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
75858975 A
1 A
75858976 CAGAAAACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:75860959 original size:36 final size:36
Alignment explanation
Indices: 75860913--75860991 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
75860903 ACTTCACAAC
* *
75860913 TTAGCCGTTCCTTCTATTTCTTCTTTCTGTTTCAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
*
75860949 TTAGCTGTTCCTTCTGTTTCTTCCTTCTGTTTCAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
75860985 TTAGCTG
1 TTAGCTG
75860992 CTTCACAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.08, C:0.24, G:0.14, T:0.54
Consensus pattern (36 bp):
TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
Found at i:75860974 original size:13 final size:13
Alignment explanation
Indices: 75860956--75860981 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75860946 AGTTTAGCTG
75860956 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
75860969 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
75860982 AGTTTAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCCTTCTGTTTC
Found at i:75864645 original size:18 final size:17
Alignment explanation
Indices: 75864617--75864651 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
75864607 ATTATTAAGA
*
75864617 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
75864634 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
75864652 TTANNNNNNN
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:75875244 original size:174 final size:173
Alignment explanation
Indices: 75874958--75875634 Score: 913
Period size: 174 Copynumber: 3.9 Consensus size: 173
75874948 GCTGGCTCAA
* * * * *
75874958 AGGACACTGTAGTTTTAAGAGTGGAACCTCTTCGTGAATTTGAAGAAGAGTCATTTCTCTTATGA
1 AGGAAACTGTAGTTTTAAGAGTGGAACCTCTTCGTGAATTTG--G-AGAGGCAGTTGTCCTATGA
* * * ** * *
75875023 GAAACACCAGTGCTTGAATGAGCCTTTGAACTTGATTCCGGAAGATCTTCATCAGAACCACTGTT
63 GAAAAACCA-TGCTTGAACGAGCCTTTGAACTTGTTTTAGGAAGATCTTCATCAGAATCACTATT
* * *
75875088 TCCTGGACCTAAATATGGCATGGGGTCAGAAACTACCTTTGATTCAG
127 TCCTGGACCAAAATATGGCATGGGGTCAGAAACTAGCTTCGATTCAG
* *
75875135 AGGAAACTGTAGTTTTAAGAGTGGAACCTCTTCTTGCATTTGGAGAGGCAGTTGTCCTATGAGAA
1 AGGAAACTGTAGTTTTAAGAGTGGAACCTCTTCGTGAATTTGGAGAGGCAGTTGTCCTATGAG-A
* *
75875200 AAAATCATGCTTGAACGAGTCTTTGAACTTGTTTTAGGAAGATCTTCATCAGAATCACTATTTCC
65 AAAACCATGCTTGAACGAGCCTTTGAACTTGTTTTAGGAAGATCTTCATCAGAATCACTATTTCC
* *
75875265 TGGACCAAAATGTGGCATGGGGTCAAAAACTAGCTTCGATTCAG
130 TGGACCAAAATATGGCATGGGGTCAGAAACTAGCTTCGATTCAG
*
75875309 AGGAAACTGTAGTTTTAAGAGTGGAACCTCTTCGTGCATTTGGAGAGGCAGTTGTCCTATGAGAA
1 AGGAAACTGTAGTTTTAAGAGTGGAACCTCTTCGTGAATTTGGAGAGGCAGTTGTCCTATGAG-A
***
75875374 AAAATTGTGCTTGAACGAGCCTTTGAACTTGTTTTAGGAAGATCTTCATCAGAATCACTATTTCC
65 AAAACCATGCTTGAACGAGCCTTTGAACTTGTTTTAGGAAGATCTTCATCAGAATCACTATTTCC
* * * *
75875439 TGGACCAAAATATGGTATGGGGTTAGAAACTAGCGTCGATTCGG
130 TGGACCAAAATATGGCATGGGGTCAGAAACTAGCTTCGATTCAG
* * * * * * *
75875483 AGGAAACTGTAGCTTTAAGAGTGGAACCTTTTCCTGAATTCGGGGAGGCAGTTGTCTTGTGAGAA
1 AGGAAACTGTAGTTTTAAGAGTGGAACCTCTTCGTGAATTTGGAGAGGCAGTTGTCCTATGAGAA
* * * *
75875548 AAACCAATGCTTGAATGAACCTTTGAACGTGTTTTAGGAAGATCTTCATCGGAATCACTATTTCC
66 AAACC-ATGCTTGAACGAGCCTTTGAACTTGTTTTAGGAAGATCTTCATCAGAATCACTATTTCC
* *
75875613 TGAATCAAAATATGGCATGGGG
130 TGGACCAAAATATGGCATGGGG
75875635 ACCCTTGAGG
Statistics
Matches: 449, Mismatches: 49, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
173 5 0.01
174 398 0.89
175 7 0.02
177 39 0.09
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (173 bp):
AGGAAACTGTAGTTTTAAGAGTGGAACCTCTTCGTGAATTTGGAGAGGCAGTTGTCCTATGAGAA
AAACCATGCTTGAACGAGCCTTTGAACTTGTTTTAGGAAGATCTTCATCAGAATCACTATTTCCT
GGACCAAAATATGGCATGGGGTCAGAAACTAGCTTCGATTCAG
Found at i:75876486 original size:24 final size:24
Alignment explanation
Indices: 75876459--75876510 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
75876449 AAGTACCTTC
75876459 ATCATCAAAAACTGCTGAGGCATT
1 ATCATCAAAAACTGCTGAGGCATT
*
75876483 ATCATCAAAAACTGCTTAGGCATT
1 ATCATCAAAAACTGCTGAGGCATT
75876507 ATCA
1 ATCA
75876511 CAAGTATATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.27
Consensus pattern (24 bp):
ATCATCAAAAACTGCTGAGGCATT
Found at i:75884692 original size:101 final size:101
Alignment explanation
Indices: 75884506--75884698 Score: 280
Period size: 101 Copynumber: 1.9 Consensus size: 101
75884496 TATATTAGTT
* * *
75884506 TTTAATGTCATATATGTTACATGTAAGAACATAAGACGTCCCAATCCATCATTGAAGTAGAAAGT
1 TTTAATATCATATATGTTACATGTAAGAACATAAGACATCCCAATCCATCATTAAAGTAGAAAGT
* * *
75884571 GCATCCTCTGATGAAGACATTTCCATGACATATGTG
66 GCATCCTCTAATAAAAACATTTCCATGACATATGTG
* * * *
75884607 TTTAATATCATATGTGTTGCGTGTAAGAACATGAA-ATATCCCAATCCATCATTAAAGTAGAAAG
1 TTTAATATCATATATGTTACATGTAAGAACAT-AAGACATCCCAATCCATCATTAAAGTAGAAAG
75884671 TGCATCCTCTAATAAAAACATTTCCATG
65 TGCATCCTCTAATAAAAACATTTCCATG
75884699 GCATGCTCGA
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 79 0.98
102 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (101 bp):
TTTAATATCATATATGTTACATGTAAGAACATAAGACATCCCAATCCATCATTAAAGTAGAAAGT
GCATCCTCTAATAAAAACATTTCCATGACATATGTG
Found at i:75889209 original size:23 final size:23
Alignment explanation
Indices: 75889131--75889219 Score: 98
Period size: 21 Copynumber: 4.1 Consensus size: 23
75889121 TACCTGATCA
75889131 ATATACGACACAT-AAGTGCCTG
1 ATATACGACACATAAAGTGCCTG
** *
75889153 A-A-ACGACACACGAGGTGCCTG
1 ATATACGACACATAAAGTGCCTG
75889174 --ATACGACACATAAAGTGCCTG
1 ATATACGACACATAAAGTGCCTG
* *
75889195 ATATACGATATATAAAGTGCCTG
1 ATATACGACACATAAAGTGCCTG
75889218 AT
1 AT
75889220 CGGCAAAGCC
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
20 9 0.16
21 25 0.45
22 1 0.02
23 21 0.38
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.21
Consensus pattern (23 bp):
ATATACGACACATAAAGTGCCTG
Found at i:75904849 original size:16 final size:16
Alignment explanation
Indices: 75904818--75904854 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
75904808 ATGTGAAGAA
75904818 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
75904834 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
75904850 TATTA
1 TATTA
75904855 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:75905171 original size:16 final size:16
Alignment explanation
Indices: 75905147--75905186 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
75905137 ATAAACAAAT
75905147 AAAAGAAA-TGAAACAG
1 AAAAGAAATTGAAAC-G
*
75905163 AATAGAAATTGAAACG
1 AAAAGAAATTGAAACG
75905179 AAAAGAAA
1 AAAAGAAA
75905187 GAAGAAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.68, C:0.05, G:0.17, T:0.10
Consensus pattern (16 bp):
AAAAGAAATTGAAACG
Done.