Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 230 of 284
Found at i:76662082 original size:12 final size:12
Alignment explanation
Indices: 76662065--76662110 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
76662055 AATTTAATAG
76662065 ATTTAATATTAA
1 ATTTAATATTAA
76662077 ATTTAATATAATAA
1 ATTTAATAT--TAA
76662091 ATATT-ATATT-A
1 AT-TTAATATTAA
76662102 ATTTAATAT
1 ATTTAATAT
76662111 CTTTTCGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
10 2 0.07
11 7 0.23
12 10 0.33
14 9 0.30
15 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:76662083 original size:26 final size:25
Alignment explanation
Indices: 76662053--76662110 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
76662043 AAATAATCTA
* *
76662053 TTAATTTAATAGAT-TTAATATTAAAT
1 TTAATATAATAAATATT-ATATT-AAT
76662079 TTAATATAATAAATATTATATTAAT
1 TTAATATAATAAATATTATATTAAT
76662104 TTAATAT
1 TTAATAT
76662111 CTTTTCGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 10 0.34
26 17 0.59
27 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
TTAATATAATAAATATTATATTAAT
Found at i:76662108 original size:20 final size:21
Alignment explanation
Indices: 76662051--76662109 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
76662041 ATAAATAATC
* * *
76662051 TATT-AATTTAATAGATTTAA
1 TATTAAATTTAATATAATAAA
76662071 TATTAAATTTAATATAATAAA
1 TATTAAATTTAATATAATAAA
* *
76662092 TATTATA-TTAATTTAATA
1 TATTAAATTTAATATAATA
76662110 TCTTTTCGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 14 0.42
21 19 0.58
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTAAATTTAATATAATAAA
Found at i:76670669 original size:23 final size:22
Alignment explanation
Indices: 76670643--76670688 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
76670633 GCCTTTAAAA
* *
76670643 TATTTAATATATGTAAATTTTCT
1 TATTTAATAGATAT-AATTTTCT
*
76670666 TATTTGATAGATATAATTTTCT
1 TATTTAATAGATATAATTTTCT
76670688 T
1 T
76670689 TAAGAACAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (22 bp):
TATTTAATAGATATAATTTTCT
Found at i:76671507 original size:3 final size:3
Alignment explanation
Indices: 76671452--76671495 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
76671442 CGCTGCTTTG
76671452 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
76671496 TGTACATTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:76672290 original size:30 final size:29
Alignment explanation
Indices: 76672256--76672318 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
76672246 AATTTACAAG
*
76672256 AATTGGATC-AAATCAAAATTTTATGTATAA
1 AATTGGA-CAAAATC-AAATTTCATGTATAA
* *
76672286 AATTGTACAAAATCAAATTTCATGTATAC
1 AATTGGACAAAATCAAATTTCATGTATAA
76672315 AATT
1 AATT
76672319 ACACATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 18 0.62
30 11 0.38
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.37
Consensus pattern (29 bp):
AATTGGACAAAATCAAATTTCATGTATAA
Found at i:76673962 original size:23 final size:23
Alignment explanation
Indices: 76673936--76673979 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
76673926 GCATTTCAAA
*
76673936 TATTTAATATATGTAAATTTTCT
1 TATTTAATATATATAAATTTTCT
* *
76673959 TATTTGATATATATAATTTTT
1 TATTTAATATATATAAATTTT
76673980 TTTAAGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (23 bp):
TATTTAATATATATAAATTTTCT
Found at i:76686625 original size:24 final size:26
Alignment explanation
Indices: 76686575--76686626 Score: 72
Period size: 24 Copynumber: 2.0 Consensus size: 26
76686565 CCTTAAACAC
76686575 AAATATAATATTTATGATTATAAAAAT
1 AAATATAATATTTA-GATTATAAAAAT
*
76686602 AAATATAATA-TTA-ATTATATAAAT
1 AAATATAATATTTAGATTATAAAAAT
76686626 A
1 A
76686627 TTAACAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 11 0.46
26 3 0.12
27 10 0.42
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (26 bp):
AAATATAATATTTAGATTATAAAAAT
Found at i:76692258 original size:29 final size:27
Alignment explanation
Indices: 76692218--76692271 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
76692208 GGGCCTGGTC
*
76692218 TTTTTTTTGGTTTCGTTTTTATTTTCA
1 TTTTTTTTGGTTCCGTTTTTATTTTCA
*
76692245 TTTTTTTGTCGGTTCCTTTTTTATTTT
1 TTTTTTT-T-GGTTCCGTTTTTATTTT
76692272 TAGTATTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 7 0.30
28 1 0.04
29 15 0.65
ACGTcount: A:0.06, C:0.09, G:0.11, T:0.74
Consensus pattern (27 bp):
TTTTTTTTGGTTCCGTTTTTATTTTCA
Found at i:76693209 original size:49 final size:48
Alignment explanation
Indices: 76693087--76693212 Score: 146
Period size: 49 Copynumber: 2.6 Consensus size: 48
76693077 CGGGCTCTCA
* * * *
76693087 ATTGACGGCGGTTATGCGGTCACGAGTTCAACTATAACTAGGGGCCCCG
1 ATTGACAGTGGTTATGTGGTCACGGGTTCAACTATAACTA-GGGCCCCG
**
76693136 ATTGACAGTGGTTATGTGGTCACGGGTTCAACTATAACTCA-GGCCCTT
1 ATTGACAGTGGTTATGTGGTCACGGGTTCAACTATAACT-AGGGCCCCG
**
76693184 AGTTGGTAGTGGTTATGTGGTCACGGGTT
1 A-TTGACAGTGGTTATGTGGTCACGGGTT
76693213 AATGTTTCAT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
48 6 0.09
49 60 0.90
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (48 bp):
ATTGACAGTGGTTATGTGGTCACGGGTTCAACTATAACTAGGGCCCCG
Found at i:76695852 original size:20 final size:20
Alignment explanation
Indices: 76695829--76695866 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76695819 TTTTAACATG
*
76695829 ATTGAAAATGTTTTAACTCA
1 ATTGAAAATATTTTAACTCA
*
76695849 ATTGAAACTATTTTAACT
1 ATTGAAAATATTTTAACT
76695867 TGATTTTATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (20 bp):
ATTGAAAATATTTTAACTCA
Found at i:76700906 original size:45 final size:45
Alignment explanation
Indices: 76700857--76700946 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
76700847 ATTATGTAAA
* *
76700857 AAAATA-AAATTTTAACTTTCTTTATATATTTTTTAAATTTTTTTT
1 AAAATATAAATTTTAA-TTTCTTTATAAATATTTTAAATTTTTTTT
* *
76700902 AAAATATAAATTTTAATTTTTTTATAAATATTTTGAATTTTTTTT
1 AAAATATAAATTTTAATTTCTTTATAAATATTTTAAATTTTTTTT
76700947 TGTAATTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 31 0.77
46 9 0.22
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (45 bp):
AAAATATAAATTTTAATTTCTTTATAAATATTTTAAATTTTTTTT
Found at i:76700944 original size:46 final size:45
Alignment explanation
Indices: 76700857--76700947 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 45
76700847 ATTATGTAAA
* *
76700857 AAAATAAAATTTTAACTTTCTTTATATATTTTTTAAATTTTTTTT
1 AAAATAAAATTTTAACTTTCTTTATAAATTTTTGAAATTTTTTTT
* *
76700902 AAAATATAAATTTTAA-TTTTTTTATAAATATTTTGAATTTTTTTTT
1 AAAATA-AAATTTTAACTTTCTTTATAAAT-TTTTGAAATTTTTTTT
76700948 GTAATTTTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
45 17 0.43
46 23 0.57
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.60
Consensus pattern (45 bp):
AAAATAAAATTTTAACTTTCTTTATAAATTTTTGAAATTTTTTTT
Found at i:76701143 original size:11 final size:11
Alignment explanation
Indices: 76701127--76701159 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
76701117 TAACTCGAAA
76701127 TTCAATTTTTT
1 TTCAATTTTTT
76701138 TTCAA-TTTTT
1 TTCAATTTTTT
*
76701148 ATCAATTTTTT
1 TTCAATTTTTT
76701159 T
1 T
76701160 GAATCAAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (11 bp):
TTCAATTTTTT
Found at i:76701579 original size:41 final size:41
Alignment explanation
Indices: 76701521--76701599 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
76701511 CTTCAGCCGA
** *
76701521 CTGACTGAACTCTAGGTGATAGTTGTCAGTTGACAACAGCT
1 CTGACTGAACTAGAGGTGAAAGTTGTCAGTTGACAACAGCT
*
76701562 CTGACTGAACTAGAGGTGAAAGTTTTCAGTTGACAACA
1 CTGACTGAACTAGAGGTGAAAGTTGTCAGTTGACAACA
76701600 ACCAGCCCTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (41 bp):
CTGACTGAACTAGAGGTGAAAGTTGTCAGTTGACAACAGCT
Found at i:76711793 original size:28 final size:28
Alignment explanation
Indices: 76711762--76711823 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
76711752 AAAGGTTGTT
76711762 TTTTTTAAAT-TTTACCAAAATGGGCCGA
1 TTTTTTAAATATTTACCAAAATGGGCC-A
* * * *
76711790 TTTTTTGATTATTTACCGAAATGGTCCA
1 TTTTTTAAATATTTACCAAAATGGGCCA
76711818 TTTTTT
1 TTTTTT
76711824 GGGAAATCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 15 0.52
29 14 0.48
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (28 bp):
TTTTTTAAATATTTACCAAAATGGGCCA
Found at i:76712033 original size:22 final size:22
Alignment explanation
Indices: 76712002--76712047 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
76711992 ATCCTATCTC
* *
76712002 AATTTTCTTCTAAAATCCTCTT
1 AATTTCCTTCCAAAATCCTCTT
*
76712024 AATTTCCTTCCAAAATTCTCTT
1 AATTTCCTTCCAAAATCCTCTT
76712046 AA
1 AA
76712048 ACTCTCAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.46
Consensus pattern (22 bp):
AATTTCCTTCCAAAATCCTCTT
Found at i:76712152 original size:31 final size:29
Alignment explanation
Indices: 76712114--76712177 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 29
76712104 CAATTTCATT
*
76712114 TTTTTAAATTAATTTCAAAATTTTTTATATA
1 TTTTTAAAATAATTT-AAAATTTTTT-TATA
*
76712145 TTTTTAAAATAATTTTAAATTTTTTTATA
1 TTTTTAAAATAATTTAAAATTTTTTTATA
76712174 TTTT
1 TTTT
76712178 CATCAATGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 8 0.26
30 9 0.29
31 14 0.45
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (29 bp):
TTTTTAAAATAATTTAAAATTTTTTTATA
Found at i:76714498 original size:30 final size:29
Alignment explanation
Indices: 76714445--76714503 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
76714435 GGAAAATAGA
*
76714445 CCATTCCGGTAAATAATAAAAAAATCGGC
1 CCATTCCGGTAAATAATAAAAAAAACGGC
* **
76714474 CCATTTCGGTAAATTTTGAAAAAAAACGGC
1 CCATTCCGGTAAATAAT-AAAAAAAACGGC
76714504 TTTTTTAGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (29 bp):
CCATTCCGGTAAATAATAAAAAAAACGGC
Found at i:76714764 original size:29 final size:27
Alignment explanation
Indices: 76714723--76714786 Score: 65
Period size: 29 Copynumber: 2.3 Consensus size: 27
76714713 GAAAATTTTC
* * *
76714723 AAAAAAATTATAAAGCTTATAAATATTAT
1 AAAAATATAATAAAGCTAAT-AA-ATTAT
**
76714752 AAAAATATAATAATTCTAATAAATTAT
1 AAAAATATAATAAAGCTAATAAATTAT
76714779 AAAAATAT
1 AAAAATAT
76714787 CATACAATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 13 0.43
28 2 0.07
29 15 0.50
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (27 bp):
AAAAATATAATAAAGCTAATAAATTAT
Found at i:76714784 original size:9 final size:9
Alignment explanation
Indices: 76714725--76714879 Score: 64
Period size: 9 Copynumber: 16.6 Consensus size: 9
76714715 AAATTTTCAA
76714725 AAAAATTAT
1 AAAAATTAT
**
76714734 AAAGCTTAT
1 AAAAATTAT
*
76714743 AAATATTAT
1 AAAAATTAT
76714752 AAAAA-TAT
1 AAAAATTAT
* *
76714760 AATAATTCT
1 AAAAATTAT
76714769 AATAAATTAT
1 AA-AAATTAT
76714779 AAAAA-TAT
1 AAAAATTAT
*
76714787 CATACAATTAAT
1 -A-AAAATT-AT
*
76714799 AAAACTTATT
1 AAAAATTA-T
** *
76714809 TTAAATAAT
1 AAAAATTAT
*
76714818 TAAAATTA-
1 AAAAATTAT
76714826 AAAAATGTAT
1 AAAAAT-TAT
* * *
76714836 TACAATTCTT
1 AAAAATT-AT
*
76714846 AAAAAATCAT
1 -AAAAATTAT
*
76714856 AAAAATTGT
1 AAAAATTAT
76714865 AGAAAATTAT
1 A-AAAATTAT
76714875 AAAAA
1 AAAAA
76714880 AATATTTAAA
Statistics
Matches: 105, Mismatches: 29, Indels: 24
0.66 0.18 0.15
Matches are distributed among these distances:
8 15 0.14
9 49 0.47
10 33 0.31
11 6 0.06
12 2 0.02
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:76714798 original size:27 final size:27
Alignment explanation
Indices: 76714747--76714801 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
76714737 GCTTATAAAT
*
76714747 ATTATAAAAATATAATAATTCTAATAA
1 ATTATAAAAATATAATAAATCTAATAA
*
76714774 ATTATAAAAATATCATACAAT-TAATAA
1 ATTATAAAAATATAATA-AATCTAATAA
76714801 A
1 A
76714802 ACTTATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (27 bp):
ATTATAAAAATATAATAAATCTAATAA
Found at i:76715445 original size:8 final size:9
Alignment explanation
Indices: 76715415--76715470 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
76715405 GTTTATAAAA
76715415 TTTTA-AAT
1 TTTTATAAT
*
76715423 GTTTTATTATT
1 -TTTTA-TAAT
*
76715434 TTTTATACT
1 TTTTATAAT
76715443 TTTTATAAT
1 TTTTATAAT
76715452 TTTATAATAAT
1 TTT-T-ATAAT
76715463 TTTTATAA
1 TTTTATAA
76715471 ATTCATATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
9 23 0.57
10 7 0.17
11 10 0.25
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:76715467 original size:20 final size:19
Alignment explanation
Indices: 76715373--76715470 Score: 65
Period size: 20 Copynumber: 5.0 Consensus size: 19
76715363 ATTCTTATGG
*
76715373 TTTTTAATTATTTTTATAGA
1 TTTTTAATAATTTTTATA-A
* * *
76715393 ATTTTAATGAGTGTTTATAAA
1 TTTTTAAT-AATTTTTAT-AA
* *
76715414 ATTTT-A-AATGTTTTATTA
1 TTTTTAATAAT-TTTTATAA
* *
76715432 TTTTTTATACTTTTTATAA
1 TTTTTAATAATTTTTATAA
76715451 TTTTATAATAATTTTTATAA
1 TTTT-TAATAATTTTTATAA
76715471 ATTCATATTT
Statistics
Matches: 60, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
18 7 0.12
19 17 0.28
20 23 0.38
21 12 0.20
22 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.60
Consensus pattern (19 bp):
TTTTTAATAATTTTTATAA
Found at i:76716184 original size:12 final size:12
Alignment explanation
Indices: 76716167--76716232 Score: 69
Period size: 12 Copynumber: 5.5 Consensus size: 12
76716157 CTGCAACTAC
*
76716167 AGGAAGTGGAAG
1 AGGAAGTAGAAG
76716179 AGGAAGTAGAAG
1 AGGAAGTAGAAG
* *
76716191 TGGAAGAAGAAG
1 AGGAAGTAGAAG
**
76716203 TTGAAGTAGAAG
1 AGGAAGTAGAAG
*
76716215 AGGAAGTTGAAG
1 AGGAAGTAGAAG
*
76716227 AAGAAG
1 AGGAAG
76716233 ACGACGATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 45 1.00
ACGTcount: A:0.47, C:0.00, G:0.41, T:0.12
Consensus pattern (12 bp):
AGGAAGTAGAAG
Found at i:76716192 original size:18 final size:18
Alignment explanation
Indices: 76716169--76716226 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
76716159 GCAACTACAG
*
76716169 GAAGTGGAAGAGGAAGTA
1 GAAGTGGAAGAGGAAGTT
*
76716187 GAAGTGGAAGAAGAAGTT
1 GAAGTGGAAGAGGAAGTT
*
76716205 GAAGTAGAAGAGGAAGTT
1 GAAGTGGAAGAGGAAGTT
76716223 GAAG
1 GAAG
76716227 AAGAAGACGA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.45, C:0.00, G:0.41, T:0.14
Consensus pattern (18 bp):
GAAGTGGAAGAGGAAGTT
Found at i:76716231 original size:18 final size:18
Alignment explanation
Indices: 76716169--76716233 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
76716159 GCAACTACAG
* *
76716169 GAAGTGGAAGAGGAAGTA
1 GAAGTAGAAGAGGAAGTT
* *
76716187 GAAGTGGAAGAAGAAGTT
1 GAAGTAGAAGAGGAAGTT
76716205 GAAGTAGAAGAGGAAGTT
1 GAAGTAGAAGAGGAAGTT
*
76716223 GAAGAAGAAGA
1 GAAGTAGAAGA
76716234 CGACGATGAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.40, T:0.12
Consensus pattern (18 bp):
GAAGTAGAAGAGGAAGTT
Found at i:76733722 original size:9 final size:9
Alignment explanation
Indices: 76733696--76733725 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
76733686 AACTAGTTCA
*
76733696 ATTAAAAAA
1 ATTAAAAAT
76733705 ATTAAAAAT
1 ATTAAAAAT
76733714 ATTAAAAAT
1 ATTAAAAAT
76733723 ATT
1 ATT
76733726 CGATTCTACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
ATTAAAAAT
Found at i:76743535 original size:43 final size:43
Alignment explanation
Indices: 76743483--76743708 Score: 290
Period size: 43 Copynumber: 5.3 Consensus size: 43
76743473 TTATTTTTAT
* * * * **
76743483 AAACACCGCTAAAGATCATGTTCTTTAGCGGCGATTTTCCCAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTCTATCAC
* * *
76743526 AAACGCCGCTAATGGTCATGTTCTTTAGCGGCGCCTCTGTCAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTCTATCAC
* *
76743569 AAACGCCGCTAAAGGTCATGTTCTGTAGCGGCGCTTCTATAAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTCTATCAC
*
76743612 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTCTATAAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTCTATCAC
* * * **
76743655 AAACGCCGCTAAATGTCATGTTCTTTAGCGTCGTTTCCCTCAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTCTATCAC
*
76743698 AAACACCGCTA
1 AAACGCCGCTA
76743709 TTGCTTGATG
Statistics
Matches: 162, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 162 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTCTATCAC
Found at i:76744085 original size:21 final size:21
Alignment explanation
Indices: 76744061--76744110 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
76744051 CTCTGCTCTG
76744061 CTCTGCTTCCCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCCGC
*
76744082 CTCTGCTTCCCTCGCTGTCGC
1 CTCTGCTTCCCTCGCTGCCGC
76744103 CTCTGCTT
1 CTCTGCTT
76744111 TAAGTTGTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.00, C:0.48, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCCGC
Found at i:76745804 original size:15 final size:16
Alignment explanation
Indices: 76745778--76745807 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76745768 TAGTTGAAAA
76745778 GTTATGTATTATGTAC
1 GTTATGTATTATGTAC
76745794 GTTAT-TATTATGTA
1 GTTATGTATTATGTA
76745808 TTTAAGTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.27, C:0.03, G:0.17, T:0.53
Consensus pattern (16 bp):
GTTATGTATTATGTAC
Found at i:76745847 original size:25 final size:25
Alignment explanation
Indices: 76745819--76745885 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
76745809 TTAAGTGTGT
* * *
76745819 GTTATGTAAGTTGTGTA-TAATGTTA
1 GTTATCTAAGTTATGTACT-ATGTAA
*
76745844 GTTATCAAAGTTATGTACTATGTAA
1 GTTATCTAAGTTATGTACTATGTAA
*
76745869 GTTATTTAAGTTATGTA
1 GTTATCTAAGTTATGTA
76745886 AGTTGTGTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 34 0.97
26 1 0.03
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.46
Consensus pattern (25 bp):
GTTATCTAAGTTATGTACTATGTAA
Found at i:76745872 original size:16 final size:17
Alignment explanation
Indices: 76745851--76746198 Score: 149
Period size: 16 Copynumber: 20.4 Consensus size: 17
76745841 TTAGTTATCA
*
76745851 AAGTTATGTA-CTATGT
1 AAGTTATGTAGTTATGT
*
76745867 AAGTTATTTAAGTTATGT
1 AAGTTATGT-AGTTATGT
*
76745885 AAGTTGTGTA-TTATGT
1 AAGTTATGTAGTTATGT
*
76745901 AAGTTAT-TATGTTAT-A
1 AAGTTATGTA-GTTATGT
* *
76745917 ATATTTATGTA-TTATAT
1 A-AGTTATGTAGTTATGT
76745934 AAGTTATGTAAGTTATGT
1 AAGTTATGT-AGTTATGT
* *
76745952 -A-TTAGGTAAGCTATGT
1 AAGTTATGT-AGTTATGT
* *
76745968 AAGTTATTTAAGTTACGT
1 AAGTTATGT-AGTTATGT
* *
76745986 AAGTTGTTTA-TTATGT
1 AAGTTATGTAGTTATGT
* *
76746002 TAGTTATGTA-CTATGT
1 AAGTTATGTAGTTATGT
76746018 AAGTTATGT-GTATTATGT
1 AAGTTATGTAG--TTATGT
76746036 -A-TTATGTATGTTATGTAT
1 AAGTTATGTA-GTTATG--T
* *
76746054 AATATTAAT-TAAGTTGTGT
1 AA-GTT-ATGT-AGTTATGT
76746073 -A-TTATGTAAGTTATGT
1 AAGTTATGT-AGTTATGT
*
76746089 AAGTTATGTATTTAAGTGT
1 AAGTTATGTAGTT-A-TGT
** *
76746108 GTGTTATGTAAGTTGTGT
1 AAGTTATGT-AGTTATGT
* **
76746126 -A-TAATGTTAGTTATCA
1 AAGTTATG-TAGTTATGT
*
76746142 AAGTTATGTA-CTATGT
1 AAGTTATGTAGTTATGT
*
76746158 AAGTTATTTAAGTTATGT
1 AAGTTATGT-AGTTATGT
*
76746176 AAGTTGTGTA-TTATGT
1 AAGTTATGTAGTTATGT
76746192 AAGTTAT
1 AAGTTAT
76746199 TATGTTATTA
Statistics
Matches: 253, Mismatches: 45, Indels: 68
0.69 0.12 0.19
Matches are distributed among these distances:
15 4 0.02
16 124 0.49
17 27 0.11
18 72 0.28
19 12 0.05
20 3 0.01
21 8 0.03
22 3 0.01
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.49
Consensus pattern (17 bp):
AAGTTATGTAGTTATGT
Found at i:76745880 original size:9 final size:9
Alignment explanation
Indices: 76745819--76746245 Score: 176
Period size: 9 Copynumber: 49.2 Consensus size: 9
76745809 TTAAGTGTGT
76745819 GTTATGTAA
1 GTTATGTAA
*
76745828 GTTGTGT-A
1 GTTATGTAA
* *
76745836 -TAATGTTA
1 GTTATGTAA
**
76745844 GTTATCAAA
1 GTTATGTAA
76745853 GTTATGT-A
1 GTTATGTAA
*
76745861 -CTATGTAA
1 GTTATGTAA
*
76745869 GTTATTTAA
1 GTTATGTAA
76745878 GTTATGTAA
1 GTTATGTAA
*
76745887 GTTGTGT-A
1 GTTATGTAA
76745895 -TTATGTAA
1 GTTATGTAA
*
76745903 GTTAT-TAT
1 GTTATGTAA
*
76745911 GTTAT-AATA
1 GTTATGTA-A
*
76745920 TTTATGT-A
1 GTTATGTAA
*
76745928 -TTATATAA
1 GTTATGTAA
76745936 GTTATGTAA
1 GTTATGTAA
76745945 GTTATGT-A
1 GTTATGTAA
*
76745953 -TTAGGTAA
1 GTTATGTAA
*
76745961 GCTATGTAA
1 GTTATGTAA
*
76745970 GTTATTTAA
1 GTTATGTAA
*
76745979 GTTACGTAA
1 GTTATGTAA
* *
76745988 GTTGT-TTA
1 GTTATGTAA
*
76745996 -TTATGTTA
1 GTTATGTAA
76746004 GTTATGT-A
1 GTTATGTAA
*
76746012 -CTATGTAA
1 GTTATGTAA
*
76746020 GTTATGTGTA
1 GTTATGT-AA
76746030 -TTATGT-A
1 GTTATGTAA
*
76746037 -TTATGTAT
1 GTTATGTAA
76746045 GTTATGTATAA
1 GTTATG--TAA
*
76746056 TATTAAT-TAA
1 -GTT-ATGTAA
*
76746066 GTTGTGT-A
1 GTTATGTAA
76746074 -TTATGTAA
1 GTTATGTAA
76746082 GTTATGTAA
1 GTTATGTAA
76746091 GTTATGT-A
1 GTTATGTAA
* **
76746099 TTTAAGTGTGT
1 GTT-A-TGTAA
76746110 GTTATGTAA
1 GTTATGTAA
*
76746119 GTTGTGT-A
1 GTTATGTAA
* *
76746127 -TAATGTTA
1 GTTATGTAA
**
76746135 GTTATCAAA
1 GTTATGTAA
76746144 GTTATGT-A
1 GTTATGTAA
*
76746152 -CTATGTAA
1 GTTATGTAA
*
76746160 GTTATTTAA
1 GTTATGTAA
76746169 GTTATGTAA
1 GTTATGTAA
*
76746178 GTTGTGT-A
1 GTTATGTAA
76746186 -TTATGTAA
1 GTTATGTAA
*
76746194 GTTAT-TAT
1 GTTATGTAA
76746202 GTTATTATGTAA
1 G---TTATGTAA
*
76746214 GTTATGCAA
1 GTTATGTAA
*
76746223 GTTTATATATAA
1 G--T-TATGTAA
76746235 GTTATGTAA
1 GTTATGTAA
76746244 GT
1 GT
76746246 ATATCACTTT
Statistics
Matches: 308, Mismatches: 68, Indels: 84
0.67 0.15 0.18
Matches are distributed among these distances:
7 58 0.19
8 40 0.13
9 179 0.58
10 9 0.03
11 9 0.03
12 11 0.04
13 2 0.01
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.48
Consensus pattern (9 bp):
GTTATGTAA
Found at i:76745949 original size:25 final size:25
Alignment explanation
Indices: 76745870--76746245 Score: 165
Period size: 25 Copynumber: 14.8 Consensus size: 25
76745860 ACTATGTAAG
* *
76745870 TTATTTAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAGTTATGTA
* *
76745895 TTATGTAAGTTAT-TATGTTATAATA
1 TTATGTAAGTTATGTAAGTTAT-GTA
*
76745920 TTTATGT-A-TTATATAAGTTATGTAA
1 -TTATGTAAGTTATGTAAGTTATGT-A
* *
76745945 GTTATGT-A-TTAGGTAAGCTATGTAA
1 -TTATGTAAGTTATGTAAGTTATGT-A
* * * *
76745970 GTTATTTAAGTTACGTAAGTTGTTTA
1 -TTATGTAAGTTATGTAAGTTATGTA
* *
76745996 TTATGTTAGTTATGT-A-CTATGTAA
1 TTATGTAAGTTATGTAAGTTATGT-A
*
76746020 GTTATGTGTA-TTATGT-A-TTATGTA
1 -TTATGT-AAGTTATGTAAGTTATGTA
* *
76746044 TGTTATGTATAATATTAAT-TAAGTTGTGTA
1 --TTATG--TAA-GTT-ATGTAAGTTATGTA
76746074 TTATGTAAGTTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTATGTA
** *
76746099 TTTAAGTGTGTGTTATGTAAGTTGTGTA
1 -TT-A-TGTAAGTTATGTAAGTTATGTA
* * **
76746127 TAATGTTAGTTATCAAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTATGTA
* *
76746152 CTATGTAAGTTATTTAAGTTATGTAA
1 TTATGTAAGTTATGTAAGTTATGT-A
*
76746178 GTTGTGT-A-TTATGTAAGTTATTATGTTA
1 -TTATGTAAGTTATGTAAG---TTATG-TA
*
76746206 TTATGTAAGTTATGCAAG-T-T-TA
1 TTATGTAAGTTATGTAAGTTATGTA
*
76746228 -TATATAAGTTATGTAAGT
1 TTATGTAAGTTATGTAAGT
76746246 ATATCACTTT
Statistics
Matches: 274, Mismatches: 47, Indels: 63
0.71 0.12 0.16
Matches are distributed among these distances:
21 15 0.05
22 2 0.01
23 3 0.01
24 17 0.06
25 143 0.52
26 19 0.07
27 23 0.08
28 34 0.12
29 12 0.04
30 6 0.02
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.49
Consensus pattern (25 bp):
TTATGTAAGTTATGTAAGTTATGTA
Found at i:76746172 original size:34 final size:34
Alignment explanation
Indices: 76746134--76746199 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
76746124 GTATAATGTT
76746134 AGTTATCAAAGTTATGTACTATGTAAGTTATTTA
1 AGTTATCAAAGTTATGTACTATGTAAGTTATTTA
** * *
76746168 AGTTATGTAAGTTGTGTATTATGTAAGTTATT
1 AGTTATCAAAGTTATGTACTATGTAAGTTATT
76746200 ATGTTATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.47
Consensus pattern (34 bp):
AGTTATCAAAGTTATGTACTATGTAAGTTATTTA
Found at i:76746511 original size:23 final size:22
Alignment explanation
Indices: 76746467--76746549 Score: 72
Period size: 21 Copynumber: 4.0 Consensus size: 22
76746457 CCATATATAA
* * *
76746467 AAATTTTAAAT-ATATATATAT
1 AAATTTTAAGTAATGTAAATAT
76746488 AAATTTTAAGTAATGTAAATTAT
1 AAATTTTAAGTAATGTAAA-TAT
76746511 AAATTTT-AGTAA-GT-AATAT
1 AAATTTTAAGTAATGTAAATAT
76746530 --A-TTTAAGTAATGTAACATAT
1 AAATTTTAAGTAATGTAA-ATAT
76746550 TTAAGTAAGT
Statistics
Matches: 53, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
16 3 0.06
17 6 0.11
18 2 0.04
19 4 0.08
20 6 0.11
21 12 0.23
22 10 0.19
23 10 0.19
ACGTcount: A:0.48, C:0.01, G:0.07, T:0.43
Consensus pattern (22 bp):
AAATTTTAAGTAATGTAAATAT
Found at i:76746544 original size:22 final size:21
Alignment explanation
Indices: 76746518--76746571 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 21
76746508 TATAAATTTT
76746518 AGTAAGTAATATATTTAAGTA
1 AGTAAGTAATATATTTAAGTA
*
76746539 A-T--GTAACATATTTAAGTA
1 AGTAAGTAATATATTTAAGTA
76746557 AGTAATGTAATATAT
1 AGTAA-GTAATATAT
76746572 ACTTAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
18 16 0.59
19 1 0.04
20 1 0.04
21 1 0.04
22 8 0.30
ACGTcount: A:0.46, C:0.02, G:0.13, T:0.39
Consensus pattern (21 bp):
AGTAAGTAATATATTTAAGTA
Found at i:76746549 original size:18 final size:17
Alignment explanation
Indices: 76746513--76746561 Score: 71
Period size: 18 Copynumber: 2.8 Consensus size: 17
76746503 TAAATTATAA
* *
76746513 ATTTTAGTAAGTAATAT
1 ATTTAAGTAAGTAACAT
76746530 ATTTAAGTAATGTAACAT
1 ATTTAAGTAA-GTAACAT
76746548 ATTTAAGTAAGTAA
1 ATTTAAGTAAGTAA
76746562 TGTAATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 13 0.45
18 16 0.55
ACGTcount: A:0.45, C:0.02, G:0.12, T:0.41
Consensus pattern (17 bp):
ATTTAAGTAAGTAACAT
Found at i:76746623 original size:47 final size:47
Alignment explanation
Indices: 76746554--76746718 Score: 209
Period size: 47 Copynumber: 3.6 Consensus size: 47
76746544 ACATATTTAA
*
76746554 GTAAGTAATGTAATATATACTTAAAAATATATATTTCGGTAAGTAAT
1 GTAAGTAATGTAATATATACTTAAGAATATATATTTCGGTAAGTAAT
76746601 GTAAGTAATGTAATATATACTTAAGAATATATA-TT---TAAGTAAT
1 GTAAGTAATGTAATATATACTTAAGAATATATATTTCGGTAAGTAAT
* * * * *
76746644 GTAAGTAAAGTAA-ACT-GAGTTATGTA-ATATATTTCGGTAAGTAAT
1 GTAAGTAATGTAATA-TATACTTAAGAATATATATTTCGGTAAGTAAT
*
76746689 GTAAGTAATGTAATATATGCTTAAGAATAT
1 GTAAGTAATGTAATATATACTTAAGAATAT
76746719 TGCATTTTTT
Statistics
Matches: 98, Mismatches: 12, Indels: 16
0.78 0.10 0.13
Matches are distributed among these distances:
41 5 0.05
42 9 0.09
43 21 0.21
45 21 0.21
46 8 0.08
47 34 0.35
ACGTcount: A:0.44, C:0.04, G:0.15, T:0.38
Consensus pattern (47 bp):
GTAAGTAATGTAATATATACTTAAGAATATATATTTCGGTAAGTAAT
Found at i:76748262 original size:83 final size:84
Alignment explanation
Indices: 76748175--76748396 Score: 243
Period size: 84 Copynumber: 2.7 Consensus size: 84
76748165 CGTTTCTAGC
* * * *
76748175 AAAAACGCAAGTATAA-A-TTCATTTC-ATGAAGCGAAACAGTGTCGCATTGACAAACATTAATT
1 AAAAACGCAACTATAAGATTTCA-TTCGA-GAAGAGAAACAGCGCCGCATTGACAAACATTAATT
** *
76748237 CACACTTGCGGTGTTTTCTTA
64 CACACTTGCGACGTTTTCCTA
* * * * *
76748258 AAAAACGCCACTATAAGATTTCATTCGAGTAGAGAAACGGCGCCGTATTGGCAAACATTAATTCA
1 AAAAACGCAACTATAAGATTTCATTCGAGAAGAGAAACAGCGCCGCATTGACAAACATTAATTCA
*
76748323 CTCTTGCGACGTTTTCCTA
66 CACTTGCGACGTTTTCCTA
* * * * *
76748342 AAAAACGCCACTATAAGATTTTATTCCAGTAGAGAAACAGCGCCGCTTTGACAAA
1 AAAAACGCAACTATAAGATTTCATTCGAGAAGAGAAACAGCGCCGCATTGACAAA
76748397 TTGTAATACA
Statistics
Matches: 117, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
83 14 0.12
84 98 0.84
85 5 0.04
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27
Consensus pattern (84 bp):
AAAAACGCAACTATAAGATTTCATTCGAGAAGAGAAACAGCGCCGCATTGACAAACATTAATTCA
CACTTGCGACGTTTTCCTA
Found at i:76748316 original size:84 final size:84
Alignment explanation
Indices: 76748220--76748396 Score: 266
Period size: 84 Copynumber: 2.1 Consensus size: 84
76748210 ACAGTGTCGC
** * *
76748220 ATTGACAAACATTAATTCACACTTGCGGTGTTTTCTTAAAAAACGCCACTATAAGATTTCATTCG
1 ATTGACAAACATTAATTCACACTTGCGACGTTTTCCTAAAAAACGCCACTATAAGATTTCATTCC
*
76748285 AGTAGAGAAACGGCGCCGT
66 AGTAGAGAAACAGCGCCGT
* * *
76748304 ATTGGCAAACATTAATTCACTCTTGCGACGTTTTCCTAAAAAACGCCACTATAAGATTTTATTCC
1 ATTGACAAACATTAATTCACACTTGCGACGTTTTCCTAAAAAACGCCACTATAAGATTTCATTCC
76748369 AGTAGAGAAACAGCGCCGCT
66 AGTAGAGAAACAGCGCCG-T
76748389 -TTGACAAA
1 ATTGACAAA
76748397 TTGTAATACA
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
84 82 0.99
85 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (84 bp):
ATTGACAAACATTAATTCACACTTGCGACGTTTTCCTAAAAAACGCCACTATAAGATTTCATTCC
AGTAGAGAAACAGCGCCGT
Found at i:76748413 original size:84 final size:84
Alignment explanation
Indices: 76748220--76748480 Score: 249
Period size: 84 Copynumber: 3.1 Consensus size: 84
76748210 ACAGTGTCGC
* * ** * *
76748220 ATTGACAAACATTAATTCACACTTGCGGTGTTTTCTTAAAAAACGCCACTATAAGATTTCATTCG
1 ATTGACAAACATTAATACACTCTTGCGACGTTTTCCTAAAAAACGCCACTATAAGATTTCATTCC
*
76748285 AGTAGAGAAACGGCGCCGT
66 AGTAGAGAAACAGCGCCGT
* * *
76748304 ATTGGCAAACATTAATTCACTCTTGCGACGTTTTCCTAAAAAACGCCACTATAAGATTTTATTCC
1 ATTGACAAACATTAATACACTCTTGCGACGTTTTCCTAAAAAACGCCACTATAAGATTTCATTCC
76748369 AGTAGAGAAACAGCGCCGCT
66 AGTAGAGAAACAGCGCCG-T
* * ** * * * * *
76748389 -TTGACAAA-TTGTAATACA-TCCTTGCGGCGTTTTTATCAAAATCGCCACAAAAATATTTCATT
1 ATTGACAAACAT-TAATACACT-CTTGCGACGTTTTCCTAAAAAACGCCACTATAAGATTTCATT
*** * *
76748451 CCTCCAGATAAACGGCGCCGT
64 CCAGTAGAGAAACAGCGCCGT
*
76748472 TTTGACAAA
1 ATTGACAAA
76748481 TTTTAAAACA
Statistics
Matches: 148, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
83 3 0.02
84 144 0.97
85 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (84 bp):
ATTGACAAACATTAATACACTCTTGCGACGTTTTCCTAAAAAACGCCACTATAAGATTTCATTCC
AGTAGAGAAACAGCGCCGT
Found at i:76749169 original size:97 final size:96
Alignment explanation
Indices: 76749068--76749355 Score: 321
Period size: 97 Copynumber: 2.9 Consensus size: 96
76749058 AAATCTTAAA
*
76749068 CCCTAACCCCTAACTCCTAACCCCTAAATTTTATTTAATATATAAATTAACAAACACTAATTAAT
1 CCCTAACCCCTAACTCCTAACCCCTAAAATTTATTTAATATATAAATTAA-AAACACTAATTAAT
*
76749133 CTAAACCCTAAACCCTAAACTTGACCCCAAAT
65 CTAAACCCTAAACCCTAAACCTGACCCCAAAT
* * *
76749165 CCCTAACCCGTAACTCCTAACCCCTAAAATTTATTTACTATATAAATTAAAAAATACTAATTAAT
1 CCCTAACCCCTAACTCCTAACCCCTAAAATTTATTTAATATATAAATT-AAAAACACTAATTAAT
* * * * *
76749230 ATAAACCTTAAACCAT-AACCTGATCCTAAAT
65 CTAAACCCTAAACCCTAAACCTGACCCCAAAT
** * **
76749261 CCCTAACCCTTAGCCCCTAACTTATAACCCTTAAACCTTATTTAATATAT-AATTAAAATACACT
1 CCCT-A-----A-CCCCTAACTCCTAACCCCTAAAATTTATTTAATATATAAATTAAAA-ACACT
*
76749325 AATTAATCTAAACCCTAAACTCT-AACCTGAC
58 AATTAATCTAAACCCTAAACCCTAAACCTGAC
76749356 ATCAAATTTT
Statistics
Matches: 159, Mismatches: 23, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
96 16 0.10
97 72 0.45
98 2 0.01
101 4 0.03
102 35 0.22
103 30 0.19
ACGTcount: A:0.41, C:0.27, G:0.02, T:0.30
Consensus pattern (96 bp):
CCCTAACCCCTAACTCCTAACCCCTAAAATTTATTTAATATATAAATTAAAAACACTAATTAATC
TAAACCCTAAACCCTAAACCTGACCCCAAAT
Found at i:76749483 original size:14 final size:14
Alignment explanation
Indices: 76749449--76749492 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
76749439 TCACATTAAC
* *
76749449 CCTTAAACCAAAAT
1 CCTTAATCCATAAT
*
76749463 CCCTAATCCATAAT
1 CCTTAATCCATAAT
76749477 CCTTAATTCCATAAT
1 CCTTAA-TCCATAAT
76749492 C
1 C
76749493 TATAAAACTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 16 0.64
15 9 0.36
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.30
Consensus pattern (14 bp):
CCTTAATCCATAAT
Found at i:76751247 original size:52 final size:48
Alignment explanation
Indices: 76751168--76751327 Score: 164
Period size: 52 Copynumber: 3.2 Consensus size: 48
76751158 CATGGCAGCA
* *
76751168 TGTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAG
1 TGTGATATGTGA--TCCGTATAAGACCATAGCTGGGCTATGGCATCGGAG
* * * *
76751218 AAATGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATC--AG
1 ---TGTGATATGTGAT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGAG
* *
76751268 TGTGATATGTGATCCGTATAAGACCATGGCTGGGCTATGGCCTCGGTA-
1 TGTGATATGTGATCCGTATAAGACCATAGCTGGGCTATGGCATCGG-AG
76751316 TGTGATATGTGA
1 TGTGATATGTGA
76751328 CTATGTGCAA
Statistics
Matches: 91, Mismatches: 12, Indels: 13
0.78 0.10 0.11
Matches are distributed among these distances:
46 26 0.29
47 12 0.13
48 12 0.13
49 1 0.01
50 2 0.02
51 1 0.01
52 27 0.30
53 10 0.11
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.31
Consensus pattern (48 bp):
TGTGATATGTGATCCGTATAAGACCATAGCTGGGCTATGGCATCGGAG
Found at i:76751293 original size:46 final size:47
Alignment explanation
Indices: 76751167--76751327 Score: 162
Period size: 46 Copynumber: 3.3 Consensus size: 47
76751157 CCATGGCAGC
* *
76751167 ATGTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAG
1 ATGTGATATGTGA--TCCGTATAAGACCATAGCTGGGCTATGGCATC--AG
* * * *
76751218 AAATGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATCAG
1 --ATGTGATATGTGAT-CCGTATAAGACCATAGCTGGGCTATGGCATCAG
* * *
76751268 -TGTGATATGTGATCCGTATAAGACCATGGCTGGGCTATGGCCTCGG
1 ATGTGATATGTGATCCGTATAAGACCATAGCTGGGCTATGGCATCAG
76751314 TATGTGATATGTGA
1 -ATGTGATATGTGA
76751328 CTATGTGCAA
Statistics
Matches: 92, Mismatches: 13, Indels: 11
0.79 0.11 0.09
Matches are distributed among these distances:
46 27 0.29
47 12 0.13
48 12 0.13
50 2 0.02
51 1 0.01
52 27 0.29
53 11 0.12
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATATGTGATCCGTATAAGACCATAGCTGGGCTATGGCATCAG
Found at i:76751359 original size:95 final size:98
Alignment explanation
Indices: 76751159--76751344 Score: 247
Period size: 98 Copynumber: 1.9 Consensus size: 98
76751149 TGGTTGGACC
* *
76751159 ATGGCAGCATGTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGT
1 ATGGCATCATGTGAAATGTGA-TTCCGTATAAGACCATAGCTGGGCTATGGCCTCGGAGAAATGT
*
76751224 GATATGTGCTACTGTATAAGACCATATCTGGGAT
65 GATATGTGCTACTGTACAAGACCATATCTGGGAT
* * *
76751258 ATGGCATCAGTGTGATATGTGA-TCCGTATAAGACCATGGCTGGGCTATGGCCTC-G-G-TATGT
1 ATGGCATCA-TGTGAAATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCCTCGGAGAAATGT
*
76751319 GATATGTGACTA-TGTGCAAGACCATA
65 GATATGTG-CTACTGTACAAGACCATA
76751345 ATTTTACTAT
Statistics
Matches: 78, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
95 24 0.31
96 4 0.05
97 1 0.01
98 30 0.38
99 8 0.10
100 11 0.14
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (98 bp):
ATGGCATCATGTGAAATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCCTCGGAGAAATGTG
ATATGTGCTACTGTACAAGACCATATCTGGGAT
Found at i:76752487 original size:74 final size:73
Alignment explanation
Indices: 76752377--76752542 Score: 188
Period size: 74 Copynumber: 2.3 Consensus size: 73
76752367 GGCGCTTTAT
* ** * *
76752377 TAAAAACGCCACTAACTCCCCAAAAGCTAAGAAAACGGCGTCGTTGGGCTTAGGTCCATTTGCGG
1 TAAAAACGCCGCTAAAGCCACAAAAGCTAAGAAAACGGCGTCGTTGGGCTTAGGTCCATTTGCGA
76752442 CGCTTTTCC
66 CGC-TTTCC
* * * * ***
76752451 TAAAAACGCCGCTAAAGCCACAAAAGCTCAGTAAACGGTGTTGTTGGGCTTAGGTTTTTTTGCGA
1 TAAAAACGCCGCTAAAGCCACAAAAGCTAAGAAAACGGCGTCGTTGGGCTTAGGTCCATTTGCGA
76752516 CGCTTTCC
66 CGCTTTCC
* * *
76752524 CAGAATCGCCGCTAAAGCC
1 TAAAAACGCCGCTAAAGCC
76752543 CGGAGCATTA
Statistics
Matches: 77, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
73 21 0.27
74 56 0.73
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (73 bp):
TAAAAACGCCGCTAAAGCCACAAAAGCTAAGAAAACGGCGTCGTTGGGCTTAGGTCCATTTGCGA
CGCTTTCC
Found at i:76752647 original size:109 final size:109
Alignment explanation
Indices: 76752433--76752704 Score: 323
Period size: 109 Copynumber: 2.4 Consensus size: 109
76752423 GGCTTAGGTC
* * ** * *
76752433 CATTTGCGGCGCTTTTCCTAAAAACGCCGCTAAAGCCACAAAAGCTCAGTAAACGGTGTTGTTGG
1 CATTAGCGGCGC-TTTCTTAAAAACGCCGCTAAAGCC-CCGAAGCTC----AACGGAGTCGTTGG
* *
76752498 GCTTAGGTTTTTTTGCGACGCTTTCCCAGAATCGCCGCTAAAGCCCGGAG
60 GCTTAGGTTCTTTTGCGACGCTTTCCCAGAAACGCCGCTAAAGCCCGGAG
*
76752548 CATTAGCGGCGCTTACTTAAAAACGCCGCTAAAGCCCCGAAGCTCAACGGAGTCGTTGGGCTTAG
1 CATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCCGAAGCTCAACGGAGTCGTTGGGCTTAG
* * *
76752613 GTTCTTTTGTTG-CGCTTTACC-GAAAACGCCGCTAAAGCCCTGAG
66 GTTCTTTTG-CGACGCTTTCCCAG-AAACGCCGCTAAAGCCCGGAG
* *
76752657 CATTAGCGACGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAA
1 CATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCCG-AAGCTCAA
76752705 AAAATTGCGT
Statistics
Matches: 139, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
108 1 0.01
109 89 0.64
110 9 0.06
113 7 0.05
114 22 0.16
115 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (109 bp):
CATTAGCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCCGAAGCTCAACGGAGTCGTTGGGCTTAG
GTTCTTTTGCGACGCTTTCCCAGAAACGCCGCTAAAGCCCGGAG
Found at i:76752825 original size:73 final size:73
Alignment explanation
Indices: 76752662--76752834 Score: 181
Period size: 73 Copynumber: 2.4 Consensus size: 73
76752652 CTGAGCATTA
* * *** *
76752662 GCGACGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAATTGCGTCGTTGGTCTTAT
1 GCGACGCTTTCTGAAAAATGCCGCTAAATCCCCGAAAGCTCAAAAAACAACGTCGTTGGGCTTAT
* *
76752727 GTTTTTTT
66 GGTATTTT
* **
76752735 GTGAC-CTTT-TCGCAAAAATGCCGCTAAATCCCCCGAAAGCTCGGAAAACAACGTCGTTGGGCT
1 GCGACGCTTTCT-G-AAAAATGCCGCTAAAT-CCCCGAAAGCTCAAAAAACAACGTCGTTGGGCT
76752798 TA-GGTATTTT
63 TATGGTATTTT
* *
76752808 GCGGCGCTTTCTGAAAAATGCAGCTAA
1 GCGACGCTTTCTGAAAAATGCCGCTAA
76752835 TGCTTATTTT
Statistics
Matches: 81, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
71 1 0.01
72 4 0.05
73 41 0.51
74 34 0.42
75 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (73 bp):
GCGACGCTTTCTGAAAAATGCCGCTAAATCCCCGAAAGCTCAAAAAACAACGTCGTTGGGCTTAT
GGTATTTT
Found at i:76755069 original size:26 final size:25
Alignment explanation
Indices: 76755031--76755101 Score: 74
Period size: 27 Copynumber: 2.8 Consensus size: 25
76755021 AAAAACTATA
*
76755031 TAAT-ATTGTTATATTTTTTATTAT
1 TAATAATTTTTATATTTTTTATTAT
* *
76755055 TAACTAATTTTTATATTTTTTGTGTTTT
1 TAA-TAATTTTTATA-TTTTT-TATTAT
76755083 TAATAATTTTTA-ATTTTTT
1 TAATAATTTTTATATTTTTT
76755102 GATAGTTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
24 4 0.10
25 6 0.15
26 9 0.22
27 14 0.35
28 7 0.17
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.68
Consensus pattern (25 bp):
TAATAATTTTTATATTTTTTATTAT
Found at i:76755126 original size:16 final size:16
Alignment explanation
Indices: 76755087--76755134 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
76755077 TGTTTTTAAT
*
76755087 AATTTTTAATTTTTTG
1 AATTTTTATTTTTTTG
*
76755103 ATAGTTTTATTTTTTTG
1 A-ATTTTTATTTTTTTG
76755120 AATTTTTATATTTTT
1 AATTTTTAT-TTTTT
76755135 AAAATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 8 0.30
17 19 0.70
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (16 bp):
AATTTTTATTTTTTTG
Found at i:76755472 original size:29 final size:30
Alignment explanation
Indices: 76755424--76755483 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 30
76755414 GGGTGAAAGA
76755424 ATAAAAAAGTTTATGTAAAAGATA-ATTTT
1 ATAAAAAAGTTTATGTAAAAGATATATTTT
*
76755453 ATAAAATA-TTTATGTAAAA-ATATATATTT
1 ATAAAAAAGTTTATGTAAAAGATATAT-TTT
76755482 AT
1 AT
76755484 GGTAATCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 3 0.11
28 13 0.46
29 12 0.43
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.42
Consensus pattern (30 bp):
ATAAAAAAGTTTATGTAAAAGATATATTTT
Found at i:76756645 original size:30 final size:30
Alignment explanation
Indices: 76756609--76756681 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
76756599 AATTAATAAA
*
76756609 AATAAAATTATACTTTAA-CTTTCTAAAAAT
1 AATAAAA-TATAATTTAATCTTTCTAAAAAT
* *
76756639 AATAAAATATTAATTTAATTTTTTTAAAAAT
1 AATAAAATA-TAATTTAATCTTTCTAAAAAT
*
76756670 TATAAAAATATA
1 AAT-AAAATATA
76756682 GGCTATTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 2 0.06
30 14 0.39
31 14 0.39
32 6 0.17
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (30 bp):
AATAAAATATAATTTAATCTTTCTAAAAAT
Found at i:76758161 original size:21 final size:20
Alignment explanation
Indices: 76758128--76758176 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
76758118 AATAATAAAA
*
76758128 TAAATAAACAACTCATGAAGT
1 TAAAAAAACAACTC-TGAAGT
* * *
76758149 TAAAAAAATAACTCTTAATT
1 TAAAAAAACAACTCTGAAGT
76758169 TAAAAAAA
1 TAAAAAAA
76758177 ATAAACATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.59, C:0.10, G:0.04, T:0.27
Consensus pattern (20 bp):
TAAAAAAACAACTCTGAAGT
Found at i:76758263 original size:16 final size:16
Alignment explanation
Indices: 76758242--76758293 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
76758232 TTTGGTTCGC
76758242 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
76758258 TGTATTGGATTAAAAG
1 TGTATTGGATTAGAGG
76758274 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
76758290 TGTA
1 TGTA
76758294 ATAGCAAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.29, C:0.00, G:0.33, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:76758537 original size:16 final size:16
Alignment explanation
Indices: 76758500--76758541 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
76758490 TTAATCATAT
*
76758500 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
76758516 TT-AAATATATTATAA
1 TTAAAATATATTATAA
76758531 TTAAAATATAT
1 TTAAAATATAT
76758542 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:76758548 original size:14 final size:15
Alignment explanation
Indices: 76758509--76758550 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
76758499 TTTAAACATA
*
76758509 ATTATTATTAAATAT
1 ATTATAATTAAATAT
76758524 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
76758538 A-TATAATTTAATA
1 ATTATAATTAAATA
76758551 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:76758673 original size:41 final size:40
Alignment explanation
Indices: 76758596--76758677 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 40
76758586 CTCAAATCAT
* *
76758596 AATATATGATACTATAAAATATAAATTAACATAATTATTA
1 AATATATGATAATATAAAATATAAATTAACAAAATTATTA
* *
76758636 AATATATTATAAT-TAAAATATATAATTTAATAAAATTATTA
1 AATATATGATAATATAAAATATA-AA-TTAACAAAATTATTA
76758677 A
1 A
76758678 TAATTTATTG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 9 0.25
40 13 0.36
41 14 0.39
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.40
Consensus pattern (40 bp):
AATATATGATAATATAAAATATAAATTAACAAAATTATTA
Found at i:76758682 original size:20 final size:21
Alignment explanation
Indices: 76758628--76758684 Score: 59
Period size: 20 Copynumber: 2.8 Consensus size: 21
76758618 AAATTAACAT
76758628 AATTATTAAATATATTATAATTAA
1 AATTATT-AATA-ATT-TAATTAA
76758652 AA-TA-T-ATAATTTAA-TAA
1 AATTATTAATAATTTAATTAA
76758669 AATTATTAATAATTTA
1 AATTATTAATAATTTA
76758685 TTGCCAGCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
17 5 0.17
18 5 0.17
19 4 0.13
20 11 0.37
22 1 0.03
23 2 0.07
24 2 0.07
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
AATTATTAATAATTTAATTAA
Found at i:76760674 original size:185 final size:185
Alignment explanation
Indices: 76760362--76760734 Score: 746
Period size: 185 Copynumber: 2.0 Consensus size: 185
76760352 TTTCAAATTA
76760362 AAGGTTATTACTCCGAACAGAGTAATAGATGACACACTTCAGCATATTGTATTTTGACACCAATA
1 AAGGTTATTACTCCGAACAGAGTAATAGATGACACACTTCAGCATATTGTATTTTGACACCAATA
76760427 AATGTGATAAACACAAAGAAATGCCAACAAGTAATGCCCCAAGTTAATAAATTGTAGATCCACCA
66 AATGTGATAAACACAAAGAAATGCCAACAAGTAATGCCCCAAGTTAATAAATTGTAGATCCACCA
76760492 AAACTAGTTGAATTTATACTACAATAATAGGGAATCGGAGACATCTTGTACTTGG
131 AAACTAGTTGAATTTATACTACAATAATAGGGAATCGGAGACATCTTGTACTTGG
76760547 AAGGTTATTACTCCGAACAGAGTAATAGATGACACACTTCAGCATATTGTATTTTGACACCAATA
1 AAGGTTATTACTCCGAACAGAGTAATAGATGACACACTTCAGCATATTGTATTTTGACACCAATA
76760612 AATGTGATAAACACAAAGAAATGCCAACAAGTAATGCCCCAAGTTAATAAATTGTAGATCCACCA
66 AATGTGATAAACACAAAGAAATGCCAACAAGTAATGCCCCAAGTTAATAAATTGTAGATCCACCA
76760677 AAACTAGTTGAATTTATACTACAATAATAGGGAATCGGAGACATCTTGTACTTGG
131 AAACTAGTTGAATTTATACTACAATAATAGGGAATCGGAGACATCTTGTACTTGG
76760732 AAG
1 AAG
76760735 AGGATGCAGA
Statistics
Matches: 188, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
185 188 1.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.26
Consensus pattern (185 bp):
AAGGTTATTACTCCGAACAGAGTAATAGATGACACACTTCAGCATATTGTATTTTGACACCAATA
AATGTGATAAACACAAAGAAATGCCAACAAGTAATGCCCCAAGTTAATAAATTGTAGATCCACCA
AAACTAGTTGAATTTATACTACAATAATAGGGAATCGGAGACATCTTGTACTTGG
Found at i:76761683 original size:36 final size:36
Alignment explanation
Indices: 76761639--76761723 Score: 118
Period size: 36 Copynumber: 2.3 Consensus size: 36
76761629 AGAAACGGGG
* *
76761639 GGAGCAAATCGGTAGAAAAGAAAAGA-AAATAAACTA
1 GGAGCAAATCGGTAGAAAAGAAAA-ACAAAGAAACAA
*
76761675 GGAGCAAATCGATAGAAAAGAAAAACAAAGAAACAA
1 GGAGCAAATCGGTAGAAAAGAAAAACAAAGAAACAA
76761711 GGAAGCAAATCGG
1 GG-AGCAAATCGG
76761724 ATGAAGGTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
35 1 0.02
36 33 0.77
37 9 0.21
ACGTcount: A:0.58, C:0.11, G:0.24, T:0.08
Consensus pattern (36 bp):
GGAGCAAATCGGTAGAAAAGAAAAACAAAGAAACAA
Found at i:76764844 original size:26 final size:26
Alignment explanation
Indices: 76764815--76764883 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
76764805 CCCATTATAT
*
76764815 GGCTCTTCGTGAGCTTCCTGATTAAA
1 GGCTCTTCGTGAGCTTCCTAATTAAA
* *
76764841 GGCTCTTTGTGAGCTTCCTAATTAAT
1 GGCTCTTCGTGAGCTTCCTAATTAAA
*
76764867 GGCTCTCCG-GAGCTTCC
1 GGCTCTTCGTGAGCTTCC
76764884 CGATATGACT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
25 8 0.21
26 30 0.79
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.35
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCTAATTAAA
Found at i:76764953 original size:25 final size:25
Alignment explanation
Indices: 76764808--76764992 Score: 71
Period size: 25 Copynumber: 7.4 Consensus size: 25
76764798 CGAGCGTCCC
*
76764808 ATTATATGGCTCTTCGTGAGCTTCCTG
1 ATTA-ATGGCTCTTC-AGAGCTTCCTG
* ** *
76764835 ATTAAAGGCTCTTTGTGAGCTTCCTA
1 ATTAATGGCTC-TTCAGAGCTTCCTG
* * *
76764861 ATTAATGGCTCTCCGGAGCTTCCCG
1 ATTAATGGCTCTTCAGAGCTTCCTG
* * *
76764886 A-T-ATGACTCGCTT--GAACTTCCCG
1 ATTAATGGCT--CTTCAGAGCTTCCTG
* * * *
76764909 A-TATGTGGCTATCCATAGCTTCCTG
1 ATTA-ATGGCTCTTCAGAGCTTCCTG
* *
76764934 ATTAATGGCTCTTCAGAGCTACCCG
1 ATTAATGGCTCTTCAGAGCTTCCTG
* * *
76764959 -TTATTGGCTC-GCACAAGCTTCCTG
1 ATTAATGGCTCTTCA-GAGCTTCCTG
76764983 ATT-ATGGCTC
1 ATTAATGGCTC
76764993 CTACGAGCTT
Statistics
Matches: 117, Mismatches: 31, Indels: 23
0.68 0.18 0.13
Matches are distributed among these distances:
23 19 0.16
24 23 0.20
25 41 0.35
26 28 0.24
27 6 0.05
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (25 bp):
ATTAATGGCTCTTCAGAGCTTCCTG
Found at i:76764991 original size:73 final size:73
Alignment explanation
Indices: 76764852--76764991 Score: 158
Period size: 73 Copynumber: 1.9 Consensus size: 73
76764842 GCTCTTTGTG
* * ** *
76764852 AGCTTCCTAATTAATGGCTCTCCGGAGCTTCCCGATATGACTCGCTTGAACTTCCCGATATGTGG
1 AGCTTCCTAATTAATGGCTCTCCAGAGCTACCCGATATGACTCGCTACAACTTCCCGATATATGG
76764917 CTATCCAT
66 CTATCCAT
* * * * *
76764925 AGCTTCCTGATTAATGGCTCTTCAGAGCTACCCGTTATTGGCTCGC-ACAAGCTTCCTGAT-TAT
1 AGCTTCCTAATTAATGGCTCTCCAGAGCTACCCGATA-TGACTCGCTACAA-CTTCCCGATATAT
76764988 GGCT
64 GGCT
76764992 CCTACGAGCT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
73 40 0.73
74 15 0.27
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.32
Consensus pattern (73 bp):
AGCTTCCTAATTAATGGCTCTCCAGAGCTACCCGATATGACTCGCTACAACTTCCCGATATATGG
CTATCCAT
Found at i:76765001 original size:24 final size:24
Alignment explanation
Indices: 76764925--76765004 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 24
76764915 GGCTATCCAT
*
76764925 AGCTTCCTGATTAATGGCT-CTTCAG
1 AGCTTCCTGATT-ATGGCTCCTAC-G
* * *
76764950 AGCTACCCG-TTATTGGCTCGC-ACA
1 AGCTTCCTGATTA-TGGCTC-CTACG
76764974 AGCTTCCTGATTATGGCTCCTACG
1 AGCTTCCTGATTATGGCTCCTACG
76764998 AGCTTCC
1 AGCTTCC
76765005 CGTTATACAG
Statistics
Matches: 43, Mismatches: 7, Indels: 11
0.70 0.11 0.18
Matches are distributed among these distances:
23 2 0.05
24 29 0.67
25 11 0.26
26 1 0.02
ACGTcount: A:0.19, C:0.30, G:0.20, T:0.31
Consensus pattern (24 bp):
AGCTTCCTGATTATGGCTCCTACG
Found at i:76773804 original size:98 final size:98
Alignment explanation
Indices: 76773635--76773830 Score: 365
Period size: 98 Copynumber: 2.0 Consensus size: 98
76773625 ATCTCTCTCT
*
76773635 CTCTCTCTCTCTAATGGAAGCTCTCATCTTCCTTTAAACCTTGAATGAAAACAAATGTAAAAACT
1 CTCTCTCTCTCTAATGGAAGCTCTCATCTTCCTTTAAACCTTGAATGAAAACAAAGGTAAAAACT
76773700 CTTCCTACGGTTGTGCTTGTGAAAATATGGAGA
66 CTTCCTACGGTTGTGCTTGTGAAAATATGGAGA
*
76773733 CTCTCTCTCTCTCATGGAAGCTCTCATCTTCCTTTAAACCTTGAATGAAAACAAAGGTAAAAACT
1 CTCTCTCTCTCTAATGGAAGCTCTCATCTTCCTTTAAACCTTGAATGAAAACAAAGGTAAAAACT
*
76773798 CTTCCTATGGTTGTGCTTGTGAAAATATGGAGA
66 CTTCCTACGGTTGTGCTTGTGAAAATATGGAGA
76773831 GGTAAACCAA
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (98 bp):
CTCTCTCTCTCTAATGGAAGCTCTCATCTTCCTTTAAACCTTGAATGAAAACAAAGGTAAAAACT
CTTCCTACGGTTGTGCTTGTGAAAATATGGAGA
Found at i:76784892 original size:16 final size:17
Alignment explanation
Indices: 76784853--76784892 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
76784843 TTTTAATTAA
76784853 ATAAATATAATTTATAT
1 ATAAATATAATTTATAT
*
76784870 ATAAATATGATTT-TAT
1 ATAAATATAATTTATAT
*
76784886 TTAAATA
1 ATAAATA
76784893 CGATAATAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
ATAAATATAATTTATAT
Found at i:76791474 original size:14 final size:15
Alignment explanation
Indices: 76791409--76791475 Score: 59
Period size: 17 Copynumber: 4.5 Consensus size: 15
76791399 TTAAAAATTG
76791409 TTTTTAAAACTGATA
1 TTTTTAAAACTGATA
* *
76791424 TTCTTTAATAAATTATA
1 TT-TTTAA-AACTGATA
*
76791441 TATTTTAAAA-T-ATG
1 T-TTTTAAAACTGATA
76791455 TTTTTAAAACTGAT-
1 TTTTTAAAACTGATA
76791469 TTTTTAA
1 TTTTTAA
76791476 TAAAATTGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
13 8 0.18
14 11 0.25
15 5 0.11
16 7 0.16
17 12 0.27
18 1 0.02
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.52
Consensus pattern (15 bp):
TTTTTAAAACTGATA
Found at i:76791503 original size:16 final size:15
Alignment explanation
Indices: 76791446--76791509 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 15
76791436 TTATATATTT
76791446 TAAAATATGTTTTT-A
1 TAAAATAT-TTTTTAA
*
76791461 -AAACTGATTTTTTAA
1 TAAAAT-ATTTTTTAA
76791476 TAAAAT-TGTTTTTAAA
1 TAAAATAT-TTTTT-AA
76791492 TAAAATATTTTTTCAA
1 TAAAATATTTTTT-AA
76791508 TA
1 TA
76791510 TTATCTTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
14 10 0.25
15 8 0.20
16 21 0.52
17 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (15 bp):
TAAAATATTTTTTAA
Found at i:76800644 original size:18 final size:16
Alignment explanation
Indices: 76800603--76800636 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
76800593 TATAAAAAAG
*
76800603 TAATTTTATTTAATTT
1 TAATATTATTTAATTT
76800619 TAATATTATATTAATTT
1 TAATATTAT-TTAATTT
76800636 T
1 T
76800637 TATTATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TAATATTATTTAATTT
Found at i:76802910 original size:29 final size:30
Alignment explanation
Indices: 76802857--76802916 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
76802847 TCCGAGACTT
*
76802857 GGGGCAAAAATGTAATTATGTAAAAATTTA
1 GGGGCAAAAATGTAATTATGTAAAAAGTTA
* *
76802887 GGGGCAAAATTGTAATTTTG-AAAAAGTTA
1 GGGGCAAAAATGTAATTATGTAAAAAGTTA
76802916 G
1 G
76802917 AGTCGAGGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.30
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGTAAAAAGTTA
Found at i:76803144 original size:13 final size:13
Alignment explanation
Indices: 76803126--76803157 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
76803116 TTTCCAGCAA
76803126 TTATGAATTTATT
1 TTATGAATTTATT
76803139 TTATGAATTTATT
1 TTATGAATTTATT
*
76803152 TGATGA
1 TTATGA
76803158 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:76803289 original size:26 final size:26
Alignment explanation
Indices: 76803260--76803388 Score: 72
Period size: 26 Copynumber: 5.0 Consensus size: 26
76803250 AAAGAGATCC
76803260 CATGTAAGACCATGTCTGGGACATGG
1 CATGTAAGACCATGTCTGGGACATGG
* ** * **
76803286 CATG--GGCACCATCAC-GAGAACATCC
1 CATGTAAG-ACCATGTCTG-GGACATGG
76803311 CATGTAAGACCATGTCTGGGACATGG
1 CATGTAAGACCATGTCTGGGACATGG
* ** * **
76803337 CATG--GGCACCATCAC-GAGAACATCC
1 CATGTAAG-ACCATGTCTG-GGACATGG
76803362 CATGTAAGACCATGTCTGGGACATGG
1 CATGTAAGACCATGTCTGGGACATGG
76803388 C
1 C
76803389 TTTGGCATGT
Statistics
Matches: 69, Mismatches: 24, Indels: 20
0.61 0.21 0.18
Matches are distributed among these distances:
24 4 0.06
25 30 0.43
26 31 0.45
27 4 0.06
ACGTcount: A:0.29, C:0.26, G:0.26, T:0.19
Consensus pattern (26 bp):
CATGTAAGACCATGTCTGGGACATGG
Found at i:76803296 original size:25 final size:25
Alignment explanation
Indices: 76803268--76803348 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
76803258 CCCATGTAAG
76803268 ACCATGTCTGGGACATGGCATGGGC
1 ACCATGTCTGGGACATGGCATGGGC
** * ** *
76803293 ACCATCAC-GAGAACATCCCATGTAAG-
1 ACCATGTCTG-GGACATGGCATG--GGC
76803319 ACCATGTCTGGGACATGGCATGGGC
1 ACCATGTCTGGGACATGGCATGGGC
76803344 ACCAT
1 ACCAT
76803349 CACGAGAACA
Statistics
Matches: 39, Mismatches: 12, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
24 2 0.05
25 20 0.51
26 15 0.38
27 2 0.05
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (25 bp):
ACCATGTCTGGGACATGGCATGGGC
Found at i:76803332 original size:51 final size:51
Alignment explanation
Indices: 76803256--76803388 Score: 266
Period size: 51 Copynumber: 2.6 Consensus size: 51
76803246 GGGTAAAGAG
76803256 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
76803307 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
76803358 ATCCCATGTAAGACCATGTCTGGGACATGGC
1 ATCCCATGTAAGACCATGTCTGGGACATGGC
76803389 TTTGGCATGT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 82 1.00
ACGTcount: A:0.29, C:0.27, G:0.26, T:0.19
Consensus pattern (51 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
Found at i:76803365 original size:25 final size:25
Alignment explanation
Indices: 76803286--76803365 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
76803276 TGGGACATGG
76803286 CATGGGCACCATCACGAGAACATCC
1 CATGGGCACCATCACGAGAACATCC
* ** * **
76803311 CATGTAAG-ACCATGTCTG-GGACATGG
1 CATG--GGCACCATCAC-GAGAACATCC
76803337 CATGGGCACCATCACGAGAACATCC
1 CATGGGCACCATCACGAGAACATCC
76803362 CATG
1 CATG
76803366 TAAGACCATG
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
24 2 0.05
25 19 0.50
26 15 0.39
27 2 0.05
ACGTcount: A:0.30, C:0.30, G:0.24, T:0.16
Consensus pattern (25 bp):
CATGGGCACCATCACGAGAACATCC
Found at i:76809181 original size:19 final size:20
Alignment explanation
Indices: 76809153--76809200 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
76809143 TTTACATTTC
* *
76809153 TTTTAATTTTT-TATTTTAAC
1 TTTT-ATTTTTGTTTTTTAAA
76809173 TTTT-TTTTTGTTTTTTAAA
1 TTTTATTTTTGTTTTTTAAA
76809192 TTTTATTTT
1 TTTTATTTT
76809201 AAATTATCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 5 0.21
19 11 0.46
20 8 0.33
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTATTTTTGTTTTTTAAA
Found at i:76809870 original size:19 final size:19
Alignment explanation
Indices: 76809824--76809877 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
76809814 ATAATTTAGC
76809824 ATTTTTAT-AT-ATTTTTA
1 ATTTTTATAATAATTTTTA
* *
76809841 AGATTTCATAATAATTTTTA
1 A-TTTTTATAATAATTTTTA
76809861 ATTTTTATAA-AATTTTT
1 ATTTTTATAATAATTTTT
76809878 GGAAAAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
17 1 0.03
18 12 0.40
19 9 0.30
20 8 0.27
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (19 bp):
ATTTTTATAATAATTTTTA
Found at i:76814145 original size:71 final size:72
Alignment explanation
Indices: 76814029--76814181 Score: 254
Period size: 71 Copynumber: 2.1 Consensus size: 72
76814019 CGGGGAATCA
* *
76814029 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAAT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAAT
76814093 GGATATC
66 GGATATC
***
76814100 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAAT
76814165 GGATATC
66 GGATATC
76814172 GCACTTAGCA
1 GCACTTAGCA
76814182 CCACCAATGA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 46 0.61
72 30 0.39
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (72 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAAT
GGATATC
Found at i:76814226 original size:104 final size:104
Alignment explanation
Indices: 76814100--76814323 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
76814090 AATGGATATC
76814100 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
76814165 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
76814204 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
76814269 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
76814308 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
76814324 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:76814685 original size:29 final size:29
Alignment explanation
Indices: 76814652--76814715 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
76814642 TAATCCACCA
76814652 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
76814681 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
76814711 CCCAA
1 CCCAA
76814716 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:76814689 original size:30 final size:30
Alignment explanation
Indices: 76814659--76814715 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
76814649 CCACCCAACT
76814659 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
76814688 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
76814716 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:76821704 original size:71 final size:71
Alignment explanation
Indices: 76821588--76821810 Score: 383
Period size: 71 Copynumber: 3.1 Consensus size: 71
76821578 GGGGAATCAT
76821588 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAATATACAATGG
*
76821653 ATATAG
66 ATATCG
76821659 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAATATACAATGG
76821724 ATATCG
66 ATATCG
* * ***
76821730 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATG
76821795 GATATCG
65 GATATCG
76821802 CACTTAGCA
1 CACTTAGCA
76821811 CCACCAATGA
Statistics
Matches: 145, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 115 0.79
72 30 0.21
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAATATACAATGG
ATATCG
Found at i:76821847 original size:104 final size:104
Alignment explanation
Indices: 76821729--76821952 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
76821719 AATGGATATC
76821729 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
76821794 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
76821833 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
76821898 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
76821937 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
76821953 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:76822314 original size:29 final size:29
Alignment explanation
Indices: 76822281--76822344 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
76822271 TAATCCACCA
76822281 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
76822310 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
76822340 CCCAA
1 CCCAA
76822345 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:76822318 original size:30 final size:30
Alignment explanation
Indices: 76822288--76822344 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
76822278 CCACCCAACT
76822288 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
76822317 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
76822345 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:76826519 original size:73 final size:73
Alignment explanation
Indices: 76826434--76826581 Score: 262
Period size: 73 Copynumber: 2.0 Consensus size: 73
76826424 TACTTGTTGG
*
76826434 GAAAGTGAAACTC-ATTGTTTTGTATCATAATAACTTTTTATTTTATTTTACAATTATAAATTAT
1 GAAAGTGAAACTCAATT-TTTTGTATCATAATAACTTTTTATTTTATTTTACAATTATAAATTAG
76826498 AATTTCTAT
65 AATTTCTAT
*
76826507 GAAAGTGAAACTCAATTTTTTGTATCGTAATAACTTTTTATTTTATTTTACAATTATAAATTAGA
1 GAAAGTGAAACTCAATTTTTTGTATCATAATAACTTTTTATTTTATTTTACAATTATAAATTAGA
76826572 ATTTCTAT
66 ATTTCTAT
76826580 GA
1 GA
76826582 TCAAAATCAA
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
73 69 0.96
74 3 0.04
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (73 bp):
GAAAGTGAAACTCAATTTTTTGTATCATAATAACTTTTTATTTTATTTTACAATTATAAATTAGA
ATTTCTAT
Found at i:76826895 original size:29 final size:30
Alignment explanation
Indices: 76826820--76826905 Score: 95
Period size: 31 Copynumber: 2.9 Consensus size: 30
76826810 GATTAAATCA
* *
76826820 AAATTAAAGTTTCAAGTATATATTTGAACC
1 AAATTAAAGTTTCATGTATATAATTGAACC
* *
76826850 ACAATTACAGTTTCATGTGTATAATT-ACACC
1 A-AATTAAAGTTTCATGTATATAATTGA-ACC
*
76826881 AAATTAAAG-TTCATGTATACAATTG
1 AAATTAAAGTTTCATGTATATAATTG
76826906 CACATTAAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
29 13 0.28
30 9 0.20
31 24 0.52
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (30 bp):
AAATTAAAGTTTCATGTATATAATTGAACC
Found at i:76838401 original size:18 final size:19
Alignment explanation
Indices: 76838364--76838401 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
76838354 GAGTGGTAGT
* *
76838364 TAACTTATTATTTTTGTGA
1 TAACTTATTATGTGTGTGA
76838383 TAACTTA-TATGTGTGTGA
1 TAACTTATTATGTGTGTGA
76838401 T
1 T
76838402 CGCAGTCCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.26, C:0.05, G:0.16, T:0.53
Consensus pattern (19 bp):
TAACTTATTATGTGTGTGA
Found at i:76838782 original size:259 final size:259
Alignment explanation
Indices: 76838323--76838840 Score: 1009
Period size: 259 Copynumber: 2.0 Consensus size: 259
76838313 CCTGTTCCCG
*
76838323 GTGCTGGGTAAGTCTTGTGCTGTTCTGCATGGAGTGGTAGTTAACTTATTATTTTTGTGATAACT
1 GTGCTGGGTAAGTCTTGTGCTGTTCTGCAGGGAGTGGTAGTTAACTTATTATTTTTGTGATAACT
76838388 TATATGTGTGTGATCGCAGTCCATTGGGGCCCTTCGTTCCAGCTCCACCTGAACTTGCAATGCAA
66 TATATGTGTGTGATCGCAGTCCATTGGGGCCCTTCGTTCCAGCTCCACCTGAACTTGCAATGCAA
*
76838453 GTGTTCAGAGAGCGGGGTGGTCCTCCTTTTGAAGGCAATAGTAGAAGTGGACGCCCTGGACCTAA
131 GTGTTCAGAGAGCGGGGTGGTCCTCCTGTTGAAGGCAATAGTAGAAGTGGACGCCCTGGACCTAA
76838518 TTTAAGTGGACCAGCCCCCTTTCTTTTGCCTCCTGGCTTCCGACAAGATCCTCGGCGCTTACGA
196 TTTAAGTGGACCAGCCCCCTTTCTTTTGCCTCCTGGCTTCCGACAAGATCCTCGGCGCTTACGA
*
76838582 GTGCTGGGTAAGTCTTGTGCTGTTCTGCAGGGAGTGGTAGTTAGCTTATTATTTTTGTGATAACT
1 GTGCTGGGTAAGTCTTGTGCTGTTCTGCAGGGAGTGGTAGTTAACTTATTATTTTTGTGATAACT
76838647 TATATGTGTGTGATCGCAGTCCATTGGGGCCCTTCGTTCCAGCTCCACCTGAACTTGCAATGCAA
66 TATATGTGTGTGATCGCAGTCCATTGGGGCCCTTCGTTCCAGCTCCACCTGAACTTGCAATGCAA
76838712 GTGTTCAGAGAGCGGGGTGGTCCTCCTGTTGAAGGCAATAGTAGAAGTGGACGCCCTGGACCTAA
131 GTGTTCAGAGAGCGGGGTGGTCCTCCTGTTGAAGGCAATAGTAGAAGTGGACGCCCTGGACCTAA
76838777 TTTAAGTGGACCAGCCCCCTTTCTTTTGCCTCCTGGCTTCCGACAAGATCCTCGGCGCTTACGA
196 TTTAAGTGGACCAGCCCCCTTTCTTTTGCCTCCTGGCTTCCGACAAGATCCTCGGCGCTTACGA
76838841 AGGTAAGCAT
Statistics
Matches: 256, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
259 256 1.00
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (259 bp):
GTGCTGGGTAAGTCTTGTGCTGTTCTGCAGGGAGTGGTAGTTAACTTATTATTTTTGTGATAACT
TATATGTGTGTGATCGCAGTCCATTGGGGCCCTTCGTTCCAGCTCCACCTGAACTTGCAATGCAA
GTGTTCAGAGAGCGGGGTGGTCCTCCTGTTGAAGGCAATAGTAGAAGTGGACGCCCTGGACCTAA
TTTAAGTGGACCAGCCCCCTTTCTTTTGCCTCCTGGCTTCCGACAAGATCCTCGGCGCTTACGA
Found at i:76843079 original size:21 final size:21
Alignment explanation
Indices: 76843039--76843079 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
76843029 TGCCACAGTT
* * *
76843039 GTTTGCATCCATGGAGACATG
1 GTTTCCATCCATAGAAACATG
76843060 GTTTCCATCCATAGAAACAT
1 GTTTCCATCCATAGAAACAT
76843080 ACATCATACC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (21 bp):
GTTTCCATCCATAGAAACATG
Found at i:76845475 original size:19 final size:19
Alignment explanation
Indices: 76845451--76845491 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
76845441 AATAAATAAT
76845451 GAAAAAGAATAGTAAAAGG
1 GAAAAAGAATAGTAAAAGG
76845470 GAAAAAGAATAGTAAAAGG
1 GAAAAAGAATAGTAAAAGG
76845489 GAA
1 GAA
76845492 GTAAGGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.27, T:0.10
Consensus pattern (19 bp):
GAAAAAGAATAGTAAAAGG
Found at i:76846482 original size:15 final size:14
Alignment explanation
Indices: 76846461--76846496 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
76846451 ATAATCCTTA
*
76846461 ATAATTATCTTAAT
1 ATAATTATCCTAAT
76846475 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
76846490 ATAATTA
1 ATAATTA
76846497 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:76846841 original size:19 final size:20
Alignment explanation
Indices: 76846817--76846860 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
76846807 TTTTTGCTTC
76846817 TTCTTCTC-GTACGTTTCTT
1 TTCTTCTCTGTACGTTTCTT
* *
76846836 TTCTTCTCTTTATGTTTCTT
1 TTCTTCTCTGTACGTTTCTT
76846856 TTCTT
1 TTCTT
76846861 TTCTCCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.05, C:0.23, G:0.07, T:0.66
Consensus pattern (20 bp):
TTCTTCTCTGTACGTTTCTT
Found at i:76848729 original size:26 final size:26
Alignment explanation
Indices: 76848691--76848744 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
76848681 TTAGTTTCAA
** * *
76848691 ATTTTGTTGTATATGTACATACTTAC
1 ATTTTGTCATATATATACATACGTAC
76848717 ATTTTGTCATATATATACATACGTAC
1 ATTTTGTCATATATATACATACGTAC
76848743 AT
1 AT
76848745 ATTTTTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.46
Consensus pattern (26 bp):
ATTTTGTCATATATATACATACGTAC
Found at i:76849574 original size:107 final size:106
Alignment explanation
Indices: 76849388--76849684 Score: 436
Period size: 107 Copynumber: 2.8 Consensus size: 106
76849378 AATTTTTTCT
* *
76849388 AATAAGGCAATGTTTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTT
1 AATAAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTT
* *
76849453 CTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTTAA
66 CTCGTTCGACCAAATAGCCAAATATCC-TTTTAAAATTTCAA
* * * *
76849495 AATAAGGTAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGTTGGGTTTCGACTT
1 AATAAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTT
* *
76849560 CTTGTTTGACCAAATAGCCAAATATCCTTTTAAAATTTCAA
66 CTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAA
* *
76849601 AGTGAA-GCAATATTTTGCGTTTGGAAATTCGAGAAAACGTG-CCTAACGTGTTGGGTTTCGATT
1 AAT-AAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATT
* *
76849664 TATCGTTCGACTAAATAGCCA
65 TCTCGTTCGACCAAATAGCCA
76849685 CCCTCTTAAA
Statistics
Matches: 169, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
105 38 0.22
106 45 0.27
107 86 0.51
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (106 bp):
AATAAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTT
CTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAA
Found at i:76854132 original size:29 final size:26
Alignment explanation
Indices: 76854079--76854137 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 26
76854069 AAAATTAAAA
76854079 AAAAACAAAAAGAAAAAATCAAAGTC
1 AAAAACAAAAAGAAAAAATCAAAGTC
* *
76854105 AAAAGCAAAAAGAGAAATCAATTAAAGTC
1 AAAAACAAAAAGA-AAA--AATCAAAGTC
76854134 AAAA
1 AAAA
76854138 TAAAATATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 12 0.43
27 3 0.11
29 13 0.46
ACGTcount: A:0.69, C:0.10, G:0.10, T:0.10
Consensus pattern (26 bp):
AAAAACAAAAAGAAAAAATCAAAGTC
Found at i:76854557 original size:7 final size:7
Alignment explanation
Indices: 76854538--76854570 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
76854528 AGAAAAAGAG
76854538 ATGAAAA
1 ATGAAAA
*
76854545 A-CAAAA
1 ATGAAAA
76854551 ATGAAAA
1 ATGAAAA
76854558 ATGAAAA
1 ATGAAAA
76854565 ATGAAA
1 ATGAAA
76854571 TAGTAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.73, C:0.03, G:0.12, T:0.12
Consensus pattern (7 bp):
ATGAAAA
Found at i:76855917 original size:87 final size:87
Alignment explanation
Indices: 76855771--76856525 Score: 1120
Period size: 87 Copynumber: 8.8 Consensus size: 87
76855761 ATCAGTGAAA
* * * *
76855771 ATCGAAAACAAAACTTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCAT
1 ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* *
76855836 TGCTGCATGAACAGC-AAGGCAG
66 TCCTGCATTAACAGCGAA-GCAG
76855858 ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
*
76855923 TCCTGCATTAACAGCGGAGCAG
66 TCCTGCATTAACAGCGAAGCAG
*
76855945 ATCGAAAACAAAACCTTGCCTTCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
*
76856010 TCCTGCATTAACAACGAAGCAG
66 TCCTGCATTAACAGCGAAGCAG
* *
76856032 ATCGAAAACAAAACCATGCCTCCATCGGTTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* *
76856097 TCCTGCATTAACAGCGAAGTAA
66 TCCTGCATTAACAGCGAAGCAG
* *
76856119 ATCAAAAACAAAACCTTGCCTCCATCGATTGCAGTGGAGCT-G-----G-TAGCAGATCTTGCCT
1 ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* *
76856177 TCCTGTATTAATAGCGGAA-CAG
66 TCCTGCATTAACAGC-GAAGCAG
*
76856199 ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAATATAGCAGATCTTGCCT
1 ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
*
76856264 TCCTGTATTAACAGCGAAGCAG
66 TCCTGCATTAACAGCGAAGCAG
* * * * *
76856286 ATCGAAAACAAAACTTTGCCTCTATTGGTTGCAGTGGAGCTGGTCAAAGATAGTAGATCTTGCCT
1 ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
*
76856351 TCCTACATTAACAGCTG-AGCAG
66 TCCTGCATTAACAGC-GAAGCAG
* *
76856373 ATCGAAAACAAAACCTTGCATCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
76856438 TCCTGCATTAA-AGCGAAGCAG
66 TCCTGCATTAACAGCGAAGCAG
** * *
76856459 ATCGAAAACAAAATTTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAT-GCAGATTTTGTCT
1 ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
76856523 TCC
66 TCC
76856526 CATATTGGTG
Statistics
Matches: 607, Mismatches: 49, Indels: 26
0.89 0.07 0.04
Matches are distributed among these distances:
80 68 0.11
81 5 0.01
85 15 0.02
86 59 0.10
87 458 0.75
88 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (87 bp):
ATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
TCCTGCATTAACAGCGAAGCAG
Found at i:76856411 original size:341 final size:341
Alignment explanation
Indices: 76855769--76856502 Score: 1118
Period size: 341 Copynumber: 2.1 Consensus size: 341
76855759 AGATCAGTGA
76855769 AAATCGAAAACAAAACTTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGC
1 AAATCGAAAACAAAACTTTGCCTCCATCGATTGCAGTGGAGCTGG-T-AAG---ACAGATCTTGC
*
76855834 ATTGCTGCATGAACAGCAAGGCAGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCT
61 ATTCCTGCATGAACAGCAA-GCAGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCT
*
76855899 GGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGGAGCAGATCGAAAACAAAACCTTGC
125 GGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAACCTTGC
* *
76855964 CTTCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAACGAAG
190 CTTCATCGGTTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCCTACATTAACAACGAAG
*
76856029 CAGATCGAAAACAAAACCATGCCTCCATCGGTTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTG
255 CAGATCGAAAACAAAACCATGCATCCATCGGTTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTG
*
76856094 CCTTCCTGCATTAACAGCGAAGT
320 CCTTCCTGCATTAA-AGCGAAGC
* * *
76856117 AAATCAAAAACAAAACCTTGCCTCCATCGATTGCAGTGGAGCTGGT-AG-CAGATCTTGCCTTCC
1 AAATCGAAAACAAAACTTTGCCTCCATCGATTGCAGTGGAGCTGGTAAGACAGATCTTGCATTCC
* * *
76856180 TGTATTAATAGCGGAA-CAGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTT
66 TGCATGAACAGC--AAGCAGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTT
* * *
76856244 AAATATAGCAGATCTTGCCTTCCTGTATTAACAGCGAAGCAGATCGAAAACAAAACTTTGCC-TC
129 AAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAACCTTGCCTTC
* * *
76856308 TATTGGTTGCAGTGGAGCTGGTCAAAGATAGTAGATCTTGCCTTCCTACATTAACAGCTG-AGCA
194 -ATCGGTTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCCTACATTAACAAC-GAAGCA
* * *
76856372 GATCGAAAACAAAACCTTGCATCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCC
257 GATCGAAAACAAAACCATGCATCCATCGGTTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCC
76856437 TTCCTGCATTAAAGCGAAGC
322 TTCCTGCATTAAAGCGAAGC
* * *
76856457 AGATCGAAAACAAAATTTTGCCTCCATCGGTTGCAGTGGAGCTGGT
1 AAATCGAAAACAAAACTTTGCCTCCATCGATTGCAGTGGAGCTGGT
76856503 TAAAGATGCA
Statistics
Matches: 356, Mismatches: 26, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
340 50 0.14
341 257 0.72
342 1 0.00
343 2 0.01
345 2 0.01
347 1 0.00
348 43 0.12
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (341 bp):
AAATCGAAAACAAAACTTTGCCTCCATCGATTGCAGTGGAGCTGGTAAGACAGATCTTGCATTCC
TGCATGAACAGCAAGCAGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAA
AGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAACCTTGCCTTCAT
CGGTTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCCTACATTAACAACGAAGCAGATC
GAAAACAAAACCATGCATCCATCGGTTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCC
TGCATTAAAGCGAAGC
Found at i:76856595 original size:44 final size:45
Alignment explanation
Indices: 76856510--76857046 Score: 409
Period size: 44 Copynumber: 12.2 Consensus size: 45
76856500 GGTTAAAGAT
* * * *
76856510 GCAGATTTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAA
1 GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
* * * * *
76856555 GTAGATATTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATA
1 GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
* * * * *
76856599 GCAGGTCTTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-AT
1 GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
* * * *
76856642 GCGGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAA
1 GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
* * * * *
76856687 GTAGATATTGTCTTCATGTATTGG-CGTGAAGTAGATC-ATAGATA
1 GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGA-AGAAA
* * * * * * *
76856731 GTAGGTCCTGTCTTCCTATATTGGTAG-GACGTGGATCGAAG-AT
1 GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
** * *
76856774 GCAGATCTTGTCTTTATGTATTGG-CGTGAAGTAGATCGAAGATA
1 GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
* * * * *
76856818 GCAGGTCTTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-AT
1 GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
* * * * *
76856861 GCGGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
1 GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
* * * * *
76856906 TCAGATCTTGTCTTCATGTATTAG-CGTGAAGTAGATCGAAGATA
1 GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
* * * * * *
76856950 GCAGGT-TCTATCTTCCTATATTGGTAG-GAAGTGGATCGAA-TAT
1 GCAGATCT-TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
* * * * *
76856993 GCAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAA
1 GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
*
76857038 ACAGATCTT
1 GCAGATCTT
76857047 ATCTCTCTGA
Statistics
Matches: 373, Mismatches: 103, Indels: 32
0.73 0.20 0.06
Matches are distributed among these distances:
42 1 0.00
43 94 0.25
44 208 0.56
45 70 0.19
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (45 bp):
GCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAAA
Found at i:76856797 original size:132 final size:132
Alignment explanation
Indices: 76856505--76856787 Score: 496
Period size: 132 Copynumber: 2.1 Consensus size: 132
76856495 GAGCTGGTTA
*
76856505 AAGATGCAGATTTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATATTGTCTTC
1 AAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATATTGTCTTC
*
76856570 ATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCTTATCTTCCTATATTGGTAGGAAGTGGAT
66 ATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGAT
76856635 CG
131 CG
*
76856637 AAGATGCGGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATATTGTCTTC
1 AAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATATTGTCTTC
* * *
76856702 ATGTATTGGCGTGAAGTAGATC-ATAGATAGTAGGTCCTGTCTTCCTATATTGGTAGGACGTGGA
66 ATGTATTGGCGTGAAGTAGATCGA-AGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGA
76856766 TCG
130 TCG
76856769 AAGATGCAGATCTTGTCTT
1 AAGATGCAGATCTTGTCTT
76856788 TATGTATTGG
Statistics
Matches: 143, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
131 1 0.01
132 142 0.99
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (132 bp):
AAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATATTGTCTTC
ATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGAT
CG
Found at i:76856798 original size:87 final size:87
Alignment explanation
Indices: 76856505--76856875 Score: 329
Period size: 87 Copynumber: 4.2 Consensus size: 87
76856495 GAGCTGGTTA
* *** * * * * * **
76856505 AAGATGCAGATTTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATATTGTCTTC
1 AAGATGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTC
* * * *
76856570 ATGTATTGG-CGTGAAGTAGATCG
65 CTATATTGGTAG-GAAGTGGATCG
* * * * * * *
76856593 AAGATAGCAGGTCTTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GC-GGATCTTGTCT
1 AAGAT-GCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGG-TCCTGTCT
* * *
76856655 TCCCATATTGGTGGCGAAGTAGATCG
63 TCCTATATTGGTAG-GAAGTGGATCG
* * * *
76856681 AAGAAAGTAGATATTGTCTTCATGTATTGGCGTGAAGTAGATC-ATAGATAGTAGGTCCTGTCTT
1 AAG-ATGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA-AGATAGCAGGTCCTGTCTT
*
76856745 CCTATATTGGTAGGACGTGGATCG
64 CCTATATTGGTAGGAAGTGGATCG
* * *
76856769 AAGATGCAGATCTTGTCTTTATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCTTATCTTCC
1 AAGATGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCC
76856834 TATATTGGTAGGAAGTGGATCG
66 TATATTGGTAGGAAGTGGATCG
*
76856856 AAGATGCGGATCTTGTCTTC
1 AAGATGCAGATCTTGTCTTC
76856876 CCATACTGGT
Statistics
Matches: 234, Mismatches: 40, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
86 1 0.00
87 110 0.47
88 78 0.33
89 43 0.18
90 2 0.01
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.32
Consensus pattern (87 bp):
AAGATGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCC
TATATTGGTAGGAAGTGGATCG
Found at i:76856798 original size:219 final size:219
Alignment explanation
Indices: 76856518--76857050 Score: 795
Period size: 219 Copynumber: 2.4 Consensus size: 219
76856508 ATGCAGATTT
* * * * * *
76856518 TGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATATTGTCTTCATGTATTGGCGTG
1 TGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCATGTATTGGCGTG
76856583 AAGTAGATCGAAGATAGCAGGTCTTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCGGAT
64 AAGTAGATCGAAGATAGCAGGTCTTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCGGAT
* *
76856648 CTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGT-AGATATTGTCTTCATGTATTGGC
129 CTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA-TCAGATATTGTCTTCATGTATTAGC
*
76856712 GTGAAGTAGATC-ATAGATAGTAGGTCC
193 GTGAAGTAGATCGA-AGATAGCAGGTCC
* *
76856739 TGTCTTCCTATATTGGTAGGACGTGGATCGAAGATGCAGATCTTGTCTTTATGTATTGGCGTGAA
1 TGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCATGTATTGGCGTGAA
76856804 GTAGATCGAAGATAGCAGGTCTTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCGGATCT
66 GTAGATCGAAGATAGCAGGTCTTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCGGATCT
*
76856869 TGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAATCAGATCTTGTCTTCATGTATTAGCGTG
131 TGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAATCAGATATTGTCTTCATGTATTAGCGTG
*
76856934 AAGTAGATCGAAGATAGCAGGTTC
196 AAGTAGATCGAAGATAGCAGGTCC
* * * *
76856958 TATCTTCCTATATTGGTAGGAAGTGGATCGAATATGCAGATCTTGTCTTCCCATACTAGTGGC--
1 TGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTT--CAT-GTATTGGCGT
* * *
76857021 GAAGTAGATCGAAGAAAACAGATCTTATCT
63 GAAGTAGATCGAAGATAGCAGGTCTTATCT
76857051 CTCTGAAGTT
Statistics
Matches: 285, Mismatches: 22, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
218 1 0.00
219 219 0.77
220 40 0.14
221 19 0.07
222 6 0.02
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (219 bp):
TGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCATGTATTGGCGTGAA
GTAGATCGAAGATAGCAGGTCTTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCGGATCT
TGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAATCAGATATTGTCTTCATGTATTAGCGTG
AAGTAGATCGAAGATAGCAGGTCC
Found at i:76856946 original size:132 final size:132
Alignment explanation
Indices: 76856775--76857046 Score: 474
Period size: 132 Copynumber: 2.1 Consensus size: 132
76856765 ATCGAAGATG
* *
76856775 CAGATCTTGTCTTTATGTATTGGCGTGAAGTAGATCGAAGATAGCAGG-TCTTATCTTCCTATAT
1 CAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGCAGGTTC-TATCTTCCTATAT
* *
76856839 TGGTAGGAAGTGGATCGAAGATGCGGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
65 TGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGA
*
76856904 AAT
130 AAA
76856907 CAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGCAGGTTCTATCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGCAGGTTCTATCTTCCTATATT
*
76856972 GGTAGGAAGTGGATCGAATATGCAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAA
66 GGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAA
76857037 AA
131 AA
76857039 CAGATCTT
1 CAGATCTT
76857047 ATCTCTCTGA
Statistics
Matches: 133, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
132 131 0.98
133 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (132 bp):
CAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGCAGGTTCTATCTTCCTATATT
GGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAA
AA
Found at i:76857415 original size:43 final size:43
Alignment explanation
Indices: 76857272--76857564 Score: 141
Period size: 43 Copynumber: 6.7 Consensus size: 43
76857262 GATTAAAACC
** * * *
76857272 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATG
1 ACAGAT-TTATCTCCCTAAGCAGTAGTGGAATAGATTGAAGATT
* * * * * *
76857316 GCAGATTTTACCTCCCTAAG-ATTACAGTGGAGTACATTGAAGCCGTT
1 ACAGA-TTTATCTCCCTAAGCAGT--AGTGGAATAGATTGAAG--ATT
*
76857363 --AG-TTCTATCTCCCTAAGCAGCAGTGGAATAGATTGAAGATT
1 ACAGATT-TATCTCCCTAAGCAGTAGTGGAATAGATTGAAGATT
** * * *
76857404 ACAGATTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATG
1 ACAGATTTATCTCCCTAAGCAGTAGTGGAATAGATTGAAGATT
* * * * * * *
76857447 GCGGATTTTACCTCCCTGAG-ATTATAGTGGAGTACATTGAAGCCATT
1 ACAGA-TTTATCTCCCTAAGCA--GTAGTGGAATAGATTGAAG--ATT
* * * ** * *
76857494 --AGCTCTATCTCCTTGGGCAGCAGTGGAATAGATTAAAGATT
1 ACAGATTTATCTCCCTAAGCAGTAGTGGAATAGATTGAAGATT
76857535 ACAGATCTTATCTCCCTAAGCAGTAGTGGA
1 ACAGAT-TTATCTCCCTAAGCAGTAGTGGA
76857565 GCAGATCGAA
Statistics
Matches: 184, Mismatches: 46, Indels: 38
0.69 0.17 0.14
Matches are distributed among these distances:
41 5 0.03
43 72 0.39
44 69 0.38
45 35 0.19
47 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (43 bp):
ACAGATTTATCTCCCTAAGCAGTAGTGGAATAGATTGAAGATT
Found at i:76857514 original size:131 final size:132
Alignment explanation
Indices: 76857272--76857704 Score: 613
Period size: 132 Copynumber: 3.3 Consensus size: 132
76857262 GATTAAAACC
* *
76857272 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATGGCAGATTTTACCTCCCTAAGA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATGGCGGATTTTACCTCCCTGAGA
* * *
76857337 TTACAGTGGAGTACATTGAAGCCGTTAGTTCTATCTCCCTAAGCAGCAGTGGAATAGATTGAAGA
66 TTACAGTGGAGTACATTGAAGCCATTAGCTCTATCTCCCTAAGCAGCAGTGGAATAGATTAAAGA
76857402 TT
131 TT
76857404 ACAGAT-TTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATGGCGGATTTTACCTCCCTGAGA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATGGCGGATTTTACCTCCCTGAGA
* * **
76857468 TTATAGTGGAGTACATTGAAGCCATTAGCTCTATCTCCTTGGGCAGCAGTGGAATAGATTAAAGA
66 TTACAGTGGAGTACATTGAAGCCATTAGCTCTATCTCCCTAAGCAGCAGTGGAATAGATTAAAGA
76857533 TT
131 TT
* *
76857535 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGAGA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATGGCGGATTTTACCTCCCTGAGA
* ** * * ** *
76857600 TTACAATGGAGTACATTGAAGCCAGCAG-TCTTATCTCTCTAAGCAGTAGTGGAGCAGA-CAAA-
66 TTACAGTGGAGTACATTGAAGCCATTAGCTC-TATCTCCCTAAGCAGCAGTGGAATAGATTAAAG
*
76857662 ATAA
130 AT-T
* *
76857666 ACTAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCG
1 AC-AGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCG
76857705 CATCAAGTCT
Statistics
Matches: 272, Mismatches: 25, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
130 2 0.01
131 129 0.47
132 141 0.52
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (132 bp):
ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATGGCGGATTTTACCTCCCTGAGA
TTACAGTGGAGTACATTGAAGCCATTAGCTCTATCTCCCTAAGCAGCAGTGGAATAGATTAAAGA
TT
Found at i:76857728 original size:40 final size:40
Alignment explanation
Indices: 76857626--76857868 Score: 168
Period size: 44 Copynumber: 5.8 Consensus size: 40
76857616 TGAAGCCAGC
* * *
76857626 AGTCTTATCTCTCTAAGCAGTAGTGGAGCAGA-CAAAATAAACT
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAT---CA
* *
76857669 AGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGCATCA
1 AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCA
*
76857710 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAGAAACCA
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----G-AATCA
* ** * ** ** *
76857754 A-TCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCA
1 AGTCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGAATCA
* * * *
76857795 CAGATCTTATCTCCCTAAGCAGTATTAGAGCAGATCGCATCC
1 -AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCA
76857837 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA
76857869 CAAAAGAAAC
Statistics
Matches: 156, Mismatches: 31, Indels: 29
0.72 0.14 0.13
Matches are distributed among these distances:
39 1 0.01
40 57 0.37
41 10 0.06
42 4 0.03
43 25 0.16
44 58 0.37
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (40 bp):
AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCA
Found at i:76857815 original size:127 final size:127
Alignment explanation
Indices: 76857669--76857899 Score: 394
Period size: 127 Copynumber: 1.8 Consensus size: 127
76857659 AAAATAAACT
*
76857669 AGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGT
1 AGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGT
76857734 GGAGCAGACAAAAGAAACCAATC-CTATCTCCC-TGAAGTTGCAGTGGAGTGGATTAAAACCAC
66 GGAGCAGACAAAAGAAACCAATCTC-ATC-CCCATGAAGTTGCAGTGGAGTGGATTAAAACCAC
* * *
76857796 AGATCTTATCTCCCTAAGCAGTATTAGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTAGT
1 AGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGT
76857861 GGAGCAGACAAAAGAAACCAATCTCATCCCCATGAAGTT
66 GGAGCAGACAAAAGAAACCAATCTCATCCCCATGAAGTT
76857900 ACACCAGAGT
Statistics
Matches: 98, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
126 3 0.03
127 94 0.96
128 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (127 bp):
AGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGT
GGAGCAGACAAAAGAAACCAATCTCATCCCCATGAAGTTGCAGTGGAGTGGATTAAAACCAC
Found at i:76859491 original size:26 final size:26
Alignment explanation
Indices: 76859453--76859506 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
76859443 TTAGTTTCAA
** * *
76859453 ATTTTGTTGTATATGTACATACTTAC
1 ATTTTGTCATATATATACATACGTAC
76859479 ATTTTGTCATATATATACATACGTAC
1 ATTTTGTCATATATATACATACGTAC
76859505 AT
1 AT
76859507 ATTTTTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.46
Consensus pattern (26 bp):
ATTTTGTCATATATATACATACGTAC
Found at i:76859626 original size:14 final size:14
Alignment explanation
Indices: 76859584--76859628 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
76859574 TGTGTACACT
*
76859584 TATATACATACATT
1 TATATACATACATG
*
76859598 TTTATA-ATACATG
1 TATATACATACATG
*
76859611 TATATACATGCATG
1 TATATACATACATG
76859625 TATA
1 TATA
76859629 CTTTATAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (14 bp):
TATATACATACATG
Found at i:76860336 original size:107 final size:106
Alignment explanation
Indices: 76860150--76860446 Score: 436
Period size: 107 Copynumber: 2.8 Consensus size: 106
76860140 AATTTTTTCT
* *
76860150 AATAAGGCAATGTTTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTT
1 AATAAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTT
* *
76860215 CTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTTAA
66 CTCGTTCGACCAAATAGCCAAATATCC-TTTTAAAATTTCAA
* * * *
76860257 AATAAGGTAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGTTGGGTTTCGACTT
1 AATAAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTT
* *
76860322 CTTGTTTGACCAAATAGCCAAATATCCTTTTAAAATTTCAA
66 CTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAA
* *
76860363 AGTGAA-GCAATATTTTGCGTTTGGAAATTCGAGAAAACGTG-CCTAACGTGTTGGGTTTCGATT
1 AAT-AAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATT
* *
76860426 TATCGTTCGACTAAATAGCCA
65 TCTCGTTCGACCAAATAGCCA
76860447 CCCTCTTAAA
Statistics
Matches: 169, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
105 38 0.22
106 45 0.27
107 86 0.51
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (106 bp):
AATAAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTT
CTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAA
Found at i:76863925 original size:17 final size:19
Alignment explanation
Indices: 76863899--76863946 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
76863889 ATATAAGAAA
*
76863899 TATTATATTA-AGA-ATTT
1 TATTAAATTATAGATATTT
* *
76863916 TATTAAATTATATATTTTT
1 TATTAAATTATAGATATTT
76863935 TATTAAATTATA
1 TATTAAATTATA
76863947 TTTAATAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 9 0.35
18 2 0.08
19 15 0.58
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TATTAAATTATAGATATTT
Found at i:76864149 original size:39 final size:40
Alignment explanation
Indices: 76864092--76864190 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
76864082 TTTCCTTATG
*
76864092 CTATTACAACT-CATTCCATTCAACCAAACACA-AGAA-TA
1 CTATTACAGCTCCATTCCATTCAACCAAACA-ATAGAATTA
* *
76864130 CTATTACAGTTCCATTCCATTCAACCAAACAATTGAATTA
1 CTATTACAGCTCCATTCCATTCAACCAAACAATAGAATTA
*
76864170 CTATTACAGCTCTATTCCATT
1 CTATTACAGCTCCATTCCATT
76864191 ATACCTCTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
38 10 0.19
39 22 0.42
40 21 0.40
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.31
Consensus pattern (40 bp):
CTATTACAGCTCCATTCCATTCAACCAAACAATAGAATTA
Found at i:76868407 original size:312 final size:313
Alignment explanation
Indices: 76867842--76868474 Score: 1241
Period size: 312 Copynumber: 2.0 Consensus size: 313
76867832 CCCATTTGAT
76867842 GACTAAACACCTGCCTCAAGTGATCAGCTCCTGCAAAATATTTTTCAAAAGATTAAACCAAGATC
1 GACTAAACACCTGCCTCAAGTGATCAGCTCCTGCAAAATATTTTTCAAAAGATTAAACCAAGATC
76867907 ATTACAGACACTGAGCCGTGTTTTAATTCTCAATAGAACAACAACATTAAAAGACAAATCGTATA
66 ATTACAGACACTGAGCCGTGTTTTAATTCTCAATAGAACAACAACATTAAAAGACAAATCGTATA
76867972 GACTAACCCTCAGTAGCATTGGGAAGACGACCCTCAGGTGGTGGGTGAGGCTTGTCCTGCATTTA
131 GACTAACCCTCAGTAGCATTGGGAAGACGACCCTCAGGTGGTGGGTGAGGCTTGTCCTGCATTTA
76868037 TTTCCAAACACCTTTAGGTAAATACAGTAACATTGAAATATACAGTTAAGAGTTGACAACACTAT
196 TTTCCAAACACCTTTAGGTAAATACAGTAACATTGAAATATACAGTTAAGAGTTGACAACACTAT
76868102 TAAGAACAATTGAACAACTCAATTAAAATCCATTTAAGTGTTGTTGCTC-AAA
261 TAAGAACAATTGAACAACTCAATTAAAATCCATTTAAGTGTTGTTGCTCAAAA
76868154 GACTAAACACCTGCCTCAAGTGATCAGCTCCTGCAAAATATTTTTCAAAAGATTAAACCAAGATC
1 GACTAAACACCTGCCTCAAGTGATCAGCTCCTGCAAAATATTTTTCAAAAGATTAAACCAAGATC
*
76868219 ATTACAGACACTGAGCCGTGTTTTAATTCTCAATAGAACAACAACATTAGAAGACAAATCGTATA
66 ATTACAGACACTGAGCCGTGTTTTAATTCTCAATAGAACAACAACATTAAAAGACAAATCGTATA
76868284 GACTAACCCTCAGTAGCATTGGGAAGACGACCCTCAGGTGGTGGGTGAGGCTTGTCCTGCATTTA
131 GACTAACCCTCAGTAGCATTGGGAAGACGACCCTCAGGTGGTGGGTGAGGCTTGTCCTGCATTTA
76868349 TTTCCAAACACCTTTAGGTAAATACAGTAACATTGAAATATACAGTTAAGAGTTGACAACACTAT
196 TTTCCAAACACCTTTAGGTAAATACAGTAACATTGAAATATACAGTTAAGAGTTGACAACACTAT
76868414 TAAGAACAATTGAACAACTCAATTAAAATCCATTTAAGTGTTGTTGCTCAAAA
261 TAAGAACAATTGAACAACTCAATTAAAATCCATTTAAGTGTTGTTGCTCAAAA
*
76868467 GAATAAAC
1 GACTAAAC
76868475 CATGCTCTAA
Statistics
Matches: 318, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
312 308 0.97
313 10 0.03
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (313 bp):
GACTAAACACCTGCCTCAAGTGATCAGCTCCTGCAAAATATTTTTCAAAAGATTAAACCAAGATC
ATTACAGACACTGAGCCGTGTTTTAATTCTCAATAGAACAACAACATTAAAAGACAAATCGTATA
GACTAACCCTCAGTAGCATTGGGAAGACGACCCTCAGGTGGTGGGTGAGGCTTGTCCTGCATTTA
TTTCCAAACACCTTTAGGTAAATACAGTAACATTGAAATATACAGTTAAGAGTTGACAACACTAT
TAAGAACAATTGAACAACTCAATTAAAATCCATTTAAGTGTTGTTGCTCAAAA
Found at i:76868933 original size:323 final size:323
Alignment explanation
Indices: 76868345--76868991 Score: 1276
Period size: 323 Copynumber: 2.0 Consensus size: 323
76868335 TTGTCCTGCA
* *
76868345 TTTATTTCCAAACACCTTTAGGTAAATACAGTAACATTGAAATATACAGTTAAGAGTTGACAACA
1 TTTATTTCCAAACACCTCTAGGTAAATACAGTAACATTGAAATACACAGTTAAGAGTTGACAACA
76868410 CTATTAAGAACAATTGAACAACTCAATTAAAATCCATTTAAGTGTTGTTGCTCAAAAGAATAAAC
66 CTATTAAGAACAATTGAACAACTCAATTAAAATCCATTTAAGTGTTGTTGCTCAAAAGAATAAAC
76868475 CATGCTCTAACATCTAACCATTTTATAATGAAGAAAATCTACAGAAACTAACTGACAAATCCCAA
131 CATGCTCTAACATCTAACCATTTTATAATGAAGAAAATCTACAGAAACTAACTGACAAATCCCAA
76868540 AACTAACTTTGGTTCATTGTATAATGTGATACAAAAACATTGATTTGGAGCAACTGCATACAAAA
196 AACTAACTTTGGTTCATTGTATAATGTGATACAAAAACATTGATTTGGAGCAACTGCATACAAAA
76868605 AATTTTGGTACCATTTATCCAGTTACTTATGTGCCATCGTTTTATCATATGAACAAATAATAG
261 AATTTTGGTACCATTTATCCAGTTACTTATGTGCCATCGTTTTATCATATGAACAAATAATAG
76868668 TTTATTTCCAAACACCTCTAGGTAAATACAGTAACATTGAAATACACAGTTAAGAGTTGACAACA
1 TTTATTTCCAAACACCTCTAGGTAAATACAGTAACATTGAAATACACAGTTAAGAGTTGACAACA
76868733 CTATTAAGAACAATTGAACAACTCAATTAAAATCCATTTAAGTGTTGTTGCTCAAAAGAATAAAC
66 CTATTAAGAACAATTGAACAACTCAATTAAAATCCATTTAAGTGTTGTTGCTCAAAAGAATAAAC
76868798 CATGCTCTAACATCTAACCATTTTATAATGAAGAAAATCTACAGAAACTAACTGACAAATCCCAA
131 CATGCTCTAACATCTAACCATTTTATAATGAAGAAAATCTACAGAAACTAACTGACAAATCCCAA
76868863 AACTAACTTTGGTTCATTGTATAATGTGATACAAAAACATTGATTTGGAGCAACTGCATACAAAA
196 AACTAACTTTGGTTCATTGTATAATGTGATACAAAAACATTGATTTGGAGCAACTGCATACAAAA
76868928 AATTTTGGTACCATTTATCCAGTTACTTATGTGCCATCGTTTTATCATATGAACAAATAATAG
261 AATTTTGGTACCATTTATCCAGTTACTTATGTGCCATCGTTTTATCATATGAACAAATAATAG
76868991 T
1 T
76868992 ATTCATCCGA
Statistics
Matches: 322, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
323 322 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (323 bp):
TTTATTTCCAAACACCTCTAGGTAAATACAGTAACATTGAAATACACAGTTAAGAGTTGACAACA
CTATTAAGAACAATTGAACAACTCAATTAAAATCCATTTAAGTGTTGTTGCTCAAAAGAATAAAC
CATGCTCTAACATCTAACCATTTTATAATGAAGAAAATCTACAGAAACTAACTGACAAATCCCAA
AACTAACTTTGGTTCATTGTATAATGTGATACAAAAACATTGATTTGGAGCAACTGCATACAAAA
AATTTTGGTACCATTTATCCAGTTACTTATGTGCCATCGTTTTATCATATGAACAAATAATAG
Found at i:76869563 original size:367 final size:366
Alignment explanation
Indices: 76868889--76869978 Score: 1499
Period size: 367 Copynumber: 3.0 Consensus size: 366
76868879 TTGTATAATG
* *
76868889 TGATACAAAAACATTGATTTGGAGCAACTGCATACAAAAAATTTTGGTACCATTTATCCAGTTAC
1 TGATACAAAAATATTGATTTGGAGCAACTGCATACAAAAAATTTTGGGACCATTTATCCAGTTAC
*
76868954 TTATGTGCCATCGTTTTATCATATGAACAAATAATAGTATTCATCCGACATGACAATAATTTATT
66 TTATGTGCCATCGTTTTATCATATGAACAAATAATAATATTCATCCGACATGACAATAATTTATT
76869019 TATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTTATGGGTATAACTA
131 TATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTTATGGGTATAACTA
76869084 CACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATTTGGGGATATATCC
196 CACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATTTGGGGATATATCC
76869149 TAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATTAACTGTTGCTGAAA
261 TAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATTAACTGTTGCTGAAA
76869214 GTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGA
326 GTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGA
76869255 TCGATACAAAAATATTGATTTGGAGCAACTGCATACAAAAAATTTTGGGACCATTTATCCAGTTA
1 T-GATACAAAAATATTGATTTGGAGCAACTGCATACAAAAAATTTTGGGACCATTTATCCAGTTA
76869320 CTTATGTGCCATCGTTTTATCATATGAACAAATAATAATATTCATCCGACATGACAATAATTTAT
65 CTTATGTGCCATCGTTTTATCATATGAACAAATAATAATATTCATCCGACATGACAATAATTTAT
76869385 TTATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTTATGGGTATAACT
130 TTATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTTATGGGTATAACT
76869450 ACACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATTTGGGGATATATC
195 ACACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATTTGGGGATATATC
76869515 CTAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATTAACTGTTGCTGAA
260 CTAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATTAACTGTTGCTGAA
76869580 AGTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGA
325 AGTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGA
** * ** * * ****** * **
76869622 TGA-A-ATGGAAT-TTCA---GGCCCACCGGTG-ATCTCAACAGCAACAACACCAG-CAAGCTA-
1 TGATACA-AAAATATTGATTTGGAGCAAC--TGCAT-ACAA-A--AA-ATTTTGGGACCATTTAT
* * **** ** ** * * ** * ** ***
76869678 CAAATT--TTAAAACCCCAAAAAG-AATA-CA-GTCAA-AACCAGTCAA-ACCCATAATA-AT-A
58 CCAGTTACTT-ATGTGCC--ATCGTTTTATCATATGAACAAATAAT-AATATTCATCCGACATGA
76869734 -A----TTTATTTATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTTC
119 CAATAATTTATTTATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTT-
* *
76869794 A-GCGTATAACTACACCAAATCAGAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATT
183 ATGGGTATAACTACACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATT
*
76869858 TGGGGATATATCCTAAAAGCACAGCATTATACACTAACCAGACCACATCATTGAATCATACATTA
248 TGGGGATATATCCTAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATTA
*
76869923 ACTGTTGCTGAAAGTAGTGTGTATTAGAGATTAAGACTCACCTCTCTTCCAGGA
313 ACTGTTGCTGAAAGTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGA
76869977 TG
1 TG
76869979 GAATGGAACT
Statistics
Matches: 667, Mismatches: 43, Indels: 39
0.89 0.06 0.05
Matches are distributed among these distances:
355 238 0.36
356 1 0.00
359 1 0.00
360 1 0.00
361 7 0.01
362 11 0.02
363 12 0.02
364 10 0.01
365 10 0.01
366 11 0.02
367 365 0.55
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (366 bp):
TGATACAAAAATATTGATTTGGAGCAACTGCATACAAAAAATTTTGGGACCATTTATCCAGTTAC
TTATGTGCCATCGTTTTATCATATGAACAAATAATAATATTCATCCGACATGACAATAATTTATT
TATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTTATGGGTATAACTA
CACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATTTGGGGATATATCC
TAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATTAACTGTTGCTGAAA
GTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGA
Found at i:76870026 original size:355 final size:355
Alignment explanation
Indices: 76869006--76870079 Score: 1491
Period size: 355 Copynumber: 3.0 Consensus size: 355
76868996 ATCCGACATG
76869006 ACAATAATTTATTTATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTT
1 ACAATAATTTATTTATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTT
76869071 ATGGGTATAACTACACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATT
66 ATGGGTATAACTACACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATT
76869136 TGGGGATATATCCTAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATTA
131 TGGGGATATATCCTAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATTA
* ***
76869201 ACTGTTGCTGAAAGTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGATCGATACAAAA
196 ACTGTTGCTGAAAGTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGATGGA-A-TGGA
* ** * ** * ** ** * * * ** *
76869266 ATATTGATTTGGAGCAAC--TGCATACAAAAAATTTTGGGAC--CATTTATCCAGTTACTTATGT
259 A-ATTCA---GGCCCACCGGTG-AT-CTCAACA----GCAACAACA-CCAGCAAGCTACAAATTT
*** * *** * * * * * * * *
76869327 GCCATCGTTTTATCATATGAACA-AAT-AATAA-TATTC-ATCCGACATG
313 TAAAAC--CCCA--AAAAGAATACAGTCAA-AACCAGTCAAACC--CATA
76869373 ACAATAATTTATTTATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTT
1 ACAATAATTTATTTATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTT
76869438 ATGGGTATAACTACACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATT
66 ATGGGTATAACTACACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATT
76869503 TGGGGATATATCCTAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATTA
131 TGGGGATATATCCTAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATTA
* *
76869568 ACTGTTGCTGAAAGTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGATGAAATGGAAT
196 ACTGTTGCTGAAAGTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGATGGAATGGAAA
76869633 TTCAGGCCCACCGGTGATCTCAACAGCAACAACACCAGCAAGCTACAAATTTTAAAACCCCAAAA
261 TTCAGGCCCACCGGTGATCTCAACAGCAACAACACCAGCAAGCTACAAATTTTAAAACCCCAAAA
76869698 AGAATACAGTCAAAACCAGTCAAACCCATA
326 AGAATACAGTCAAAACCAGTCAAACCCATA
*
76869728 ATAATAATTTATTTATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTT
1 ACAATAATTTATTTATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTT
* *
76869793 CA-GCGTATAACTACACCAAATCAGAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAAT
66 -ATGGGTATAACTACACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAAT
*
76869857 TTGGGGATATATCCTAAAAGCACAGCATTATACACTAACCAGACCACATCATTGAATCATACATT
130 TTGGGGATATATCCTAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATT
*
76869922 AACTGTTGCTGAAAGTAGTGTGTATTAGAGATTAAGACTCACCTCTCTTCCAGGATGGAATGGAA
195 AACTGTTGCTGAAAGTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGATGGAATGGAA
* *
76869987 CTTCAGGCCCACCGGTGATCTCAACAGCAACAACACCAGCAAGCTACAAATTTTAAAACGCCAAA
260 ATTCAGGCCCACCGGTGATCTCAACAGCAACAACACCAGCAAGCTACAAATTTTAAAACCCCAAA
76870052 AAGAATACAGTCAAAACCAGTCAAACCC
325 AAGAATACAGTCAAAACCAGTCAAACCC
76870080 TCAAACATAA
Statistics
Matches: 652, Mismatches: 46, Indels: 30
0.90 0.06 0.04
Matches are distributed among these distances:
354 6 0.01
355 349 0.54
356 7 0.01
357 6 0.01
358 12 0.02
359 2 0.00
361 9 0.01
362 2 0.00
363 2 0.00
364 3 0.00
365 2 0.00
366 1 0.00
367 251 0.38
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (355 bp):
ACAATAATTTATTTATTTGTCGTTTAAATGTCTATGCTCTATAATTAAATTAAAATCAAAGTTTT
ATGGGTATAACTACACCAAATCAAAAGTATCACATTGCATATTGAGTCGAAGATAATATGTAATT
TGGGGATATATCCTAAAAGCACAGCATCATACACTAACCAGACCACATCATTGAATCATACATTA
ACTGTTGCTGAAAGTAGTGTGTATTAGAGATTAAGACTCACCACTCTTCCAGGATGGAATGGAAA
TTCAGGCCCACCGGTGATCTCAACAGCAACAACACCAGCAAGCTACAAATTTTAAAACCCCAAAA
AGAATACAGTCAAAACCAGTCAAACCCATA
Done.