Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 232 of 284
Found at i:77239770 original size:48 final size:48
Alignment explanation
Indices: 77239718--77239815 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
77239708 GCTATGGCAC
*
77239718 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGATA
*
77239766 TGTGATCCCATGTAAGACCATGTCTGAGACATGGCTTTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGATA
77239814 TG
1 TG
77239816 AGACTTCGTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGATA
Found at i:77239848 original size:48 final size:47
Alignment explanation
Indices: 77239721--77239850 Score: 165
Period size: 48 Copynumber: 2.7 Consensus size: 47
77239711 ATGGCACTGT
*
77239721 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCT-GGACATGGCATTGGCATCGATATGA
*
77239769 GATCCCATGTAAGACCATGTCTGAGACATGGCTTTGGCATCGATATGA
1 GATCCCATGTAAGACCATGTCTG-GACATGGCATTGGCATCGATATGA
* *
77239817 GA-CTTCGTGTAAGACCATAGT-TGGACTATGGCAT
1 GATC-CCATGTAAGACCAT-GTCTGGAC-ATGGCAT
77239851 CAAGTAAACG
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
47 5 0.07
48 66 0.90
49 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (47 bp):
GATCCCATGTAAGACCATGTCTGGACATGGCATTGGCATCGATATGA
Found at i:77240596 original size:21 final size:21
Alignment explanation
Indices: 77240570--77240613 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
77240560 TGATAAAGTT
77240570 CTTATGTTGCAAAAATGTTAG
1 CTTATGTTGCAAAAATGTTAG
**
77240591 CTTATGTTGGGAAAATGTTAG
1 CTTATGTTGCAAAAATGTTAG
77240612 CT
1 CT
77240614 AACTCTAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (21 bp):
CTTATGTTGCAAAAATGTTAG
Found at i:77243445 original size:42 final size:42
Alignment explanation
Indices: 77243398--77243512 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 42
77243388 GAGATTCTGA
* *
77243398 ATAAGACCATATCTAGGATATGGCATCGGTATG-TGGTTTCAT
1 ATAAGACCATATCTAGGATATGGCATCGATATGAT-ATTTCAT
* *
77243440 ATAAGACCATGT-TAGGGACATGGCATCGATATGATATTTCAT
1 ATAAGACCATATCTA-GGATATGGCATCGATATGATATTTCAT
* * * *
77243482 GTAAGACCATATCCAAGATATGGCATTGATA
1 ATAAGACCATATCTAGGATATGGCATCGATA
77243513 CGGTACTATG
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.03
42 56 0.93
43 2 0.03
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (42 bp):
ATAAGACCATATCTAGGATATGGCATCGATATGATATTTCAT
Found at i:77244262 original size:37 final size:38
Alignment explanation
Indices: 77244207--77244307 Score: 120
Period size: 37 Copynumber: 2.7 Consensus size: 38
77244197 TTACTCTACG
* *
77244207 TGTATGACCATAGCTGGGCTATGGCATC-GTAATGACA
1 TGTAAGACCATAGCTGGGCTATGGCATCTGTAATCACA
* *
77244244 TGTAAGACCATAGCTGGGCTATGGCA-CTGTGATCCCA
1 TGTAAGACCATAGCTGGGCTATGGCATCTGTAATCACA
77244281 TGTAAGACCAT-GTCTGGGAC-ATGGCAT
1 TGTAAGACCATAG-CTGGG-CTATGGCAT
77244308 TGGCATCGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
36 2 0.04
37 53 0.95
38 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (38 bp):
TGTAAGACCATAGCTGGGCTATGGCATCTGTAATCACA
Found at i:77244323 original size:48 final size:48
Alignment explanation
Indices: 77244271--77244368 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
77244261 GCTATGGCAC
*
77244271 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGATA
*
77244319 TGTGATCCCATGTAAGACCATGTCTGAGACATGGCTTTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGATA
77244367 TG
1 TG
77244369 AGACTTCGTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGATA
Found at i:77244401 original size:48 final size:47
Alignment explanation
Indices: 77244274--77244403 Score: 165
Period size: 48 Copynumber: 2.7 Consensus size: 47
77244264 ATGGCACTGT
*
77244274 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCT-GGACATGGCATTGGCATCGATATGA
*
77244322 GATCCCATGTAAGACCATGTCTGAGACATGGCTTTGGCATCGATATGA
1 GATCCCATGTAAGACCATGTCTG-GACATGGCATTGGCATCGATATGA
* *
77244370 GA-CTTCGTGTAAGACCATAGT-TGGACTATGGCAT
1 GATC-CCATGTAAGACCAT-GTCTGGAC-ATGGCAT
77244404 CAAGTAAACG
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
47 5 0.07
48 66 0.90
49 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (47 bp):
GATCCCATGTAAGACCATGTCTGGACATGGCATTGGCATCGATATGA
Found at i:77245149 original size:21 final size:21
Alignment explanation
Indices: 77245123--77245166 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
77245113 TGATAAAGTT
77245123 CTTATGTTGCAAAAATGTTAG
1 CTTATGTTGCAAAAATGTTAG
**
77245144 CTTATGTTGGGAAAATGTTAG
1 CTTATGTTGCAAAAATGTTAG
77245165 CT
1 CT
77245167 AACTCTAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (21 bp):
CTTATGTTGCAAAAATGTTAG
Found at i:77247998 original size:42 final size:42
Alignment explanation
Indices: 77247951--77248065 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 42
77247941 GAGATTCTGA
* *
77247951 ATAAGACCATATCTAGGATATGGCATCGGTATG-TGGTTTCAT
1 ATAAGACCATATCTAGGATATGGCATCGATATGAT-ATTTCAT
* *
77247993 ATAAGACCATGT-TAGGGACATGGCATCGATATGATATTTCAT
1 ATAAGACCATATCTA-GGATATGGCATCGATATGATATTTCAT
* * * *
77248035 GTAAGACCATATCCAAGATATGGCATTGATA
1 ATAAGACCATATCTAGGATATGGCATCGATA
77248066 CGGTACTATG
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.03
42 56 0.93
43 2 0.03
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (42 bp):
ATAAGACCATATCTAGGATATGGCATCGATATGATATTTCAT
Found at i:77254171 original size:37 final size:37
Alignment explanation
Indices: 77254129--77254203 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
77254119 ATCCTGCAGG
77254129 TTCCTATATGGCTACCAATAACATGCATGATTCTCCA
1 TTCCTATATGGCTACCAATAACATGCATGATTCTCCA
77254166 TTCCTATATGGCTACCAATAACATGCATGATTCTCCA
1 TTCCTATATGGCTACCAATAACATGCATGATTCTCCA
77254203 T
1 T
77254204 AAATTTCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (37 bp):
TTCCTATATGGCTACCAATAACATGCATGATTCTCCA
Found at i:77257257 original size:29 final size:29
Alignment explanation
Indices: 77257197--77257281 Score: 127
Period size: 29 Copynumber: 3.0 Consensus size: 29
77257187 CATTCATGCA
* *
77257197 TATGGCCCACTAGGCCC-AATCTCATTCC
1 TATGGCCCATTAGGCCCAAATCACATTCC
*
77257225 TATGGCCCATTAGGCCCAAATCACATTCG
1 TATGGCCCATTAGGCCCAAATCACATTCC
*
77257254 TATGGCCCATTAAGCCCAAATCACATTC
1 TATGGCCCATTAGGCCCAAATCACATTC
77257282 ATAGTCATGC
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 16 0.31
29 36 0.69
ACGTcount: A:0.27, C:0.34, G:0.14, T:0.25
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATTCC
Found at i:77263914 original size:20 final size:21
Alignment explanation
Indices: 77263878--77263920 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
77263868 AGTTTATTAT
77263878 ATTATTATATTAACTT-AATA
1 ATTATTATATTAACTTAAATA
*
77263898 ATTATTATTATT-TCTTAAATA
1 ATTATTA-TATTAACTTAAATA
77263919 AT
1 AT
77263921 AAGTAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (21 bp):
ATTATTATATTAACTTAAATA
Found at i:77264062 original size:20 final size:21
Alignment explanation
Indices: 77264010--77264066 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
77264000 ACTTATTAAT
77264010 TTATTCATTAATATAATAATATA
1 TTATT-ATTAA-ATAATAATATA
* *
77264033 ATATCAATTAAATAATAATA-A
1 TTAT-TATTAAATAATAATATA
77264054 TTATTATTAAATA
1 TTATTATTAAATA
77264067 TTTATTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 8 0.28
21 4 0.14
22 9 0.31
23 8 0.28
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (21 bp):
TTATTATTAAATAATAATATA
Found at i:77264209 original size:30 final size:31
Alignment explanation
Indices: 77264174--77264242 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 31
77264164 TCATCATATA
77264174 AAAATA-TTTTACTAATTA-ATAATAAATAAT
1 AAAATATTTTTACTAATTATAT-ATAAATAAT
77264204 AAAATATCTTTTTACTAATTATATATAAATAAT
1 AAAATA--TTTTTACTAATTATATATAAATAAT
77264237 ACAAAT
1 A-AAAT
77264243 GTACTCATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
30 6 0.18
33 22 0.65
34 6 0.18
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (31 bp):
AAAATATTTTTACTAATTATATATAAATAAT
Found at i:77264340 original size:29 final size:29
Alignment explanation
Indices: 77264301--77264357 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
77264291 GTCTTTTCTT
* *
77264301 AATTTATTTTATAATATAATAATATAATC
1 AATTTAATTTATAATATAATAAAATAATC
77264330 AATTTAATTTATAATATAATAAAATAAT
1 AATTTAATTTATAATATAATAAAATAAT
77264358 AACAATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (29 bp):
AATTTAATTTATAATATAATAAAATAATC
Found at i:77264378 original size:37 final size:37
Alignment explanation
Indices: 77264311--77264381 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
77264301 AATTTATTTT
* * *
77264311 ATAATATAATAATATAATCAATTTAATTTATAATATA
1 ATAAAATAATAAAATAATCAATATAATTTATAATATA
*
77264348 ATAAAATAATAACAATAAT-AATATATTTTATAAT
1 ATAAAATAATAA-AATAATCAATATAATTTATAAT
77264382 TAAACAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 24 0.83
38 5 0.17
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (37 bp):
ATAAAATAATAAAATAATCAATATAATTTATAATATA
Found at i:77266685 original size:29 final size:28
Alignment explanation
Indices: 77266619--77266740 Score: 136
Period size: 28 Copynumber: 4.3 Consensus size: 28
77266609 AAGTCTACAT
* *
77266619 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
*
77266647 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
* *
77266676 ACATTCATATGGCCCATCAAGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
* ** * *
77266704 ACTTTCATATGGCCTGTCAGGTCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
*
77266732 ACACTCATA
1 ACATTCATA
77266741 GCCATGTAGT
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 55 0.69
29 25 0.31
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:77270406 original size:20 final size:20
Alignment explanation
Indices: 77270381--77270432 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
77270371 ATTATATATA
*
77270381 ATAATAAATAATAAGATAAC
1 ATAATAAATAATAAAATAAC
* *
77270401 ATAATATATAATAAAATAAG
1 ATAATAAATAATAAAATAAC
*
77270421 A-AATGAATAATA
1 ATAATAAATAATA
77270433 TATATAATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
ATAATAAATAATAAAATAAC
Found at i:77270417 original size:28 final size:28
Alignment explanation
Indices: 77270369--77270523 Score: 80
Period size: 28 Copynumber: 5.7 Consensus size: 28
77270359 GTAATTTTTA
* *
77270369 AAATTATATATAATAAT-AAATAATAAGAT
1 AAATAATATAT-ATAATAAAATAAGAA-AT
77270398 AACAT-A-ATATATAATAAAATAAGAAAT
1 AA-ATAATATATATAATAAAATAAGAAAT
* ***
77270425 GAATAATATATATAATAAAATGATTTAAT
1 AAATAATATATATAATAAAAT-AAGAAAT
* *
77270454 ATATAATA-AAAT-ATATAAAT-A-AAAT
1 AAATAATATATATAATA-AAATAAGAAAT
* *
77270479 ATATAATAATATATAA-AAAAT-ATAAA-
1 AAATAAT-ATATATAATAAAATAAGAAAT
*
77270505 AAATAATACATA-AATAAAA
1 AAATAATATATATAATAAAA
77270524 ATATATATAA
Statistics
Matches: 102, Mismatches: 13, Indels: 26
0.72 0.09 0.18
Matches are distributed among these distances:
24 2 0.02
25 18 0.18
26 14 0.14
27 19 0.19
28 34 0.33
29 13 0.13
30 2 0.02
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (28 bp):
AAATAATATATATAATAAAATAAGAAAT
Found at i:77270468 original size:32 final size:30
Alignment explanation
Indices: 77270367--77270536 Score: 120
Period size: 32 Copynumber: 5.5 Consensus size: 30
77270357 TTGTAATTTT
*
77270367 TAAAAT-TATATATAATAATAAATAATAAGATAA
1 TAAAATATATA-ATAA-AATATATAAT-A-ATAA
* * *
77270400 CATAATATATAATAAAATA-A-GA-AATGAA
1 TAAAATATATAATAAAATATATAATAAT-AA
* *
77270428 TAATATATATAATAAAATGATTTAATATATAA
1 TAAAATATATAATAAAAT-ATATAATA-ATAA
77270460 TAAAATATATAAATAAAATATATAATAATATA
1 TAAAATATAT-AATAAAATATATAATAATA-A
*
77270492 TAAAAAATATAA-AAAATA-ATACATAAATAA
1 TAAAATATATAATAAAATATATA-AT-AATAA
77270522 -AAATATATATAATAA
1 TAAA-ATATATAATAA
77270537 TTTTTTAAAT
Statistics
Matches: 112, Mismatches: 12, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
27 2 0.02
28 18 0.16
29 7 0.06
30 17 0.15
31 13 0.12
32 33 0.29
33 18 0.16
34 4 0.04
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (30 bp):
TAAAATATATAATAAAATATATAATAATAA
Found at i:77270474 original size:20 final size:20
Alignment explanation
Indices: 77270427--77270533 Score: 78
Period size: 20 Copynumber: 5.2 Consensus size: 20
77270417 TAAGAAATGA
77270427 ATAATATATATAATAAAATGAT
1 ATAA-ATATATAATAAAAT-AT
*
77270449 -TTAATATATAATAAAATAT
1 ATAAATATATAATAAAATAT
*
77270468 ATAAATAAAATATATAATAATAT
1 ATAAAT-ATATA-ATAA-AATAT
*
77270491 ATAAAAAATATAA-AAAATA-
1 AT-AAATATATAATAAAATAT
* *
77270510 ATACATAAATAA-AAATATAT
1 ATAAATATATAATAAA-ATAT
77270530 ATAA
1 ATAA
77270534 TAATTTTTTA
Statistics
Matches: 69, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
18 10 0.14
19 7 0.10
20 25 0.36
21 8 0.12
22 5 0.07
23 11 0.16
24 3 0.04
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (20 bp):
ATAAATATATAATAAAATAT
Found at i:77270489 original size:23 final size:23
Alignment explanation
Indices: 77270451--77270535 Score: 93
Period size: 23 Copynumber: 3.6 Consensus size: 23
77270441 AAAATGATTT
77270451 AATATATAATAAAATATATAAATAA
1 AATATATAAT--AATATATAAATAA
77270476 AATATATAATAATATATAAA-AA
1 AATATATAATAATATATAAATAA
* * *
77270498 ATATAAAAAATAATACATAAATAA
1 A-ATATATAATAATATATAAATAA
77270522 AA-ATATATATAATA
1 AATATATA-ATAATA
77270536 ATTTTTTAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
22 6 0.12
23 33 0.63
24 3 0.06
25 10 0.19
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (23 bp):
AATATATAATAATATATAAATAA
Found at i:77270509 original size:35 final size:37
Alignment explanation
Indices: 77270450--77270530 Score: 105
Period size: 35 Copynumber: 2.2 Consensus size: 37
77270440 TAAAATGATT
* *
77270450 TAATATATAATAAAATATATAAATAA-A-ATATATAA
1 TAATATATAATAAAATATAAAAATAATACATAAATAA
77270485 TAATATATAA-AAAATATAAAAAATAATACATAAATAA
1 TAATATATAATAAAATAT-AAAAATAATACATAAATAA
*
77270522 AAATATATA
1 TAATATATA
77270531 TAATAATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
34 7 0.17
35 17 0.43
36 1 0.03
37 15 0.38
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (37 bp):
TAATATATAATAAAATATAAAAATAATACATAAATAA
Found at i:77270523 original size:26 final size:26
Alignment explanation
Indices: 77270472--77270530 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 26
77270462 AAATATATAA
*
77270472 ATAAAATATATAATAATATATAAAAAAT
1 ATAAAA-A-ATAATAATAAATAAAAAAT
77270500 ATAAAAAATAATACATAAATAAAAATAT
1 ATAAAAAATAATA-ATAAATAAAAA-AT
77270528 ATA
1 ATA
77270531 TAATAATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 6 0.21
27 11 0.39
28 11 0.39
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (26 bp):
ATAAAAAATAATAATAAATAAAAAAT
Found at i:77270600 original size:31 final size:30
Alignment explanation
Indices: 77270548--77270621 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 30
77270538 TTTTTAAATG
*
77270548 TATAAATAATGTTTATAATAAAAATAAATGATA
1 TATAAAAAAT-TTTATAAT--AAATAAATGATA
* *
77270581 TATAAAACATTTTA-AATAAATAAATTATA
1 TATAAAAAATTTTATAATAAATAAATGATA
77270610 TATAAAAAATTT
1 TATAAAAAATTT
77270622 AAAAAGGATT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 22 0.59
31 3 0.08
32 4 0.11
33 8 0.22
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (30 bp):
TATAAAAAATTTTATAATAAATAAATGATA
Found at i:77270619 original size:14 final size:14
Alignment explanation
Indices: 77270573--77270620 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
77270563 TAATAAAAAT
*
77270573 AAATGATATATAAA
1 AAATTATATATAAA
* * *
77270587 ACATTTTAAATAAA
1 AAATTATATATAAA
77270601 TAAATTATATATAAA
1 -AAATTATATATAAA
77270616 AAATT
1 AAATT
77270621 TAAAAAGGAT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (14 bp):
AAATTATATATAAA
Found at i:77272212 original size:90 final size:90
Alignment explanation
Indices: 77272059--77273102 Score: 1428
Period size: 90 Copynumber: 11.6 Consensus size: 90
77272049 GCCATGTTAA
* * * * *
77272059 TATCTTTGAGCTGTTCCCCGTCAAATACAGAGACGCCAAATCTG-CTATCTTCGATCTACTTCGA
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGA
*
77272123 TGTAAACACACAAATGTCAGATCTGC
65 TGTAAACACACGAATGTCAGATCTGC
* * * * *
77272149 TATCTTCGATCTGTTCCCCGTCTAATATAGAGACACCAAATCAGTCATCTTCGATCTGTTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* * *
77272214 GTAAACACATGAATCTCAGATCTAC
66 GTAAACACACGAATGTCAGATCTGC
* * * * * *
77272239 TATCTTCGATCTACTCCCCGTCTAATATAGAAACGCCAAATCTGTCATCTTTGATCTACTTCGAC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* * *
77272304 ATAAACACACGAATGTCAGATTTGT
66 GTAAACACACGAATGTCAGATCTGC
* * *
77272329 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACACAAAATCTGTCATCTTCGATCTGCTTTGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
*
77272394 GTAAACACACGAATGTTAGATCTGC
66 GTAAACACACGAATGTCAGATCTGC
* * * * *
77272419 TATCTTTGATCTGCTCCCTGTCCAATACAGAGACGCCAAATATGTCATCTTCGATCTGCTTCAAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
77272484 GTAAACACACGAATGTCAGATCTGC
66 GTAAACACACGAATGTCAGATCTGC
* * * * * *
77272509 TATCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCTATCATCTTCAATCTGTTTCAAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
*
77272574 GTAAACACATGAATGTCAGATCTGC
66 GTAAACACACGAATGTCAGATCTGC
* * * *
77272599 TATCTTTGAGCTGTTCCCCGTCAAATACAGAGACGCCAAATCTG-CTATCTTCGATCTGCTTCGA
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGA
* *
77272663 CGTAAACACACAAATGTCAGATCTGC
65 TGTAAACACACGAATGTCAGATCTGC
* *
77272689 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCAAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* *
77272754 GTAAACACACAAATGTTAGATCTGC
66 GTAAACACACGAATGTCAGATCTGC
* * * ** *
77272779 TATCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCTGTCATTTTTTATCTACTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
*
77272844 GTAAACACACGAATGTCAGATTTGC
66 GTAAACACACGAATGTCAGATCTGC
* *
77272869 TATCTTCGATCTGCTCCCCGTCTAATACAGGGACGCCAAATCTGTCATCTTCGATCTGCTTTGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* *
77272934 GTAAACACACGAATGTTAGATCTGT
66 GTAAACACACGAATGTCAGATCTGC
** * * * *
77272959 TATCTTCGATCTGCTCCCCGTCTTTTACAAAGATGCCAAATCTGTCATATTCGATCTGCTTCTAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
77273024 GTAAACACACGAATGTCAGATCT-C
66 GTAAACACACGAATGTCAGATCTGC
* * *
77273048 TATCTTCGATCTGCTGCCCTTCTAATATAGAGACGCCAAATCTGTCATCTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGAT
77273103 TTGTTCCCTA
Statistics
Matches: 833, Mismatches: 118, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
89 48 0.06
90 783 0.94
91 2 0.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (90 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
GTAAACACACGAATGTCAGATCTGC
Found at i:77273130 original size:44 final size:45
Alignment explanation
Indices: 77272330--77273135 Score: 143
Period size: 45 Copynumber: 18.0 Consensus size: 45
77272320 CAGATTTGTT
* * * *
77272330 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACACAAAATCTGTC
1 ATCTTCGATCTGCTGCCCTTCTAATACAGAGACGCCAAATCTGTC
**** * * * ** *
77272375 ATCTTCGATCTGCT-TTGATGTAA-ACACACGAATGTTAGATCTG-C
1 ATCTTCGATCTGCTGCCCTTCTAATACAGA-G-ACGCCAAATCTGTC
* * *
77272419 TATCTTTGATCTGCT-CCCTGTCCAATACAGAGACGCCAAATATGTC
1 -ATCTTCGATCTGCTGCCCT-TCTAATACAGAGACGCCAAATCTGTC
* ** * * * * *
77272465 ATCTTCGATCTGCT-TCAATGTAA-ACACACGAATGTCAGATCTG-C
1 ATCTTCGATCTGCTGCCCTTCTAATACAGA-G-ACGCCAAATCTGTC
* * * * *
77272509 TATCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCTATC
1 -ATCTTCGATCTGCTGCCCTTCTAATACAGAGACGCCAAATCTGTC
* ** ** * * * * *
77272555 ATCTTCAATCTG-TTTCAATGTAA-ACACATGAATGTCAGATCTG-C
1 ATCTTCGATCTGCTGCCCTTCTAATACAGA-G-ACGCCAAATCTGTC
* * * * * *
77272599 TATCTTTGAGCTGTTCCCCGTCAAATACAGAGACGCCAAATCTG-C
1 -ATCTTCGATCTGCTGCCCTTCTAATACAGAGACGCCAAATCTGTC
* * * * * * * * * *
77272644 TATCTTCGATCTGCTTCGACGT-AAACACACAAATGTCAGATCTG-C
1 -ATCTTCGATCTGCTGC-CCTTCTAATACAGAGACGCCAAATCTGTC
* *
77272689 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC
1 -ATCTTCGATCTGCTGCCCTTCTAATACAGAGACGCCAAATCTGTC
* * ** * * * * * ** *
77272735 ATTTTCGATCTGCTTCAATGT-AAACACACAAATGTTAGATCTG-C
1 ATCTTCGATCTGCTGCCCT-TCTAATACAGAGACGCCAAATCTGTC
* * * *
77272779 TATCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCTGTC
1 -ATCTTCGATCTGCTGCCCTTCTAATACAGAGACGCCAAATCTGTC
* ** * * ** * * * * * *
77272825 ATTTTTTATCTACT-TCGATGTAA-ACACACGAATGTCAGATTTG-C
1 ATCTTCGATCTGCTGCCCTTCTAATACAGA-G-ACGCCAAATCTGTC
* * *
77272869 TATCTTCGATCTGCTCCCCGTCTAATACAGGGACGCCAAATCTGTC
1 -ATCTTCGATCTGCTGCCCTTCTAATACAGAGACGCCAAATCTGTC
**** * * * ** * *
77272915 ATCTTCGATCTGCT-TTGATGTAA-ACACACGAATGTTAGATCTGTT
1 ATCTTCGATCTGCTGCCCTTCTAATACAGA-G-ACGCCAAATCTGTC
* * ** * *
77272960 ATCTTCGATCTGCTCCCCGTCTTTTACAAAGATGCCAAATCTGTC
1 ATCTTCGATCTGCTGCCCTTCTAATACAGAGACGCCAAATCTGTC
* * * * * * * *
77273005 ATATTCGATCTGCT--TCTATGTAA-ACACACGAATGTCAGATCTCT-
1 ATCTTCGATCTGCTGCCCT-TCTAATACAGA-G-ACGCCAAATCTGTC
*
77273049 ATCTTCGATCTGCTGCCCTTCTAATATAGAGACGCCAAATCTGTC
1 ATCTTCGATCTGCTGCCCTTCTAATACAGAGACGCCAAATCTGTC
* * *
77273094 ATCTTCGATTTG-TTCCCTATC-AATACAGAGATGCCAAATCTG
1 ATCTTCGATCTGCTGCCCT-TCTAATACAGAGACGCCAAATCTG
77273136 CTATCAGTGA
Statistics
Matches: 531, Mismatches: 188, Indels: 85
0.66 0.23 0.11
Matches are distributed among these distances:
43 23 0.04
44 85 0.16
45 365 0.69
46 39 0.07
47 19 0.04
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (45 bp):
ATCTTCGATCTGCTGCCCTTCTAATACAGAGACGCCAAATCTGTC
Found at i:77273824 original size:87 final size:87
Alignment explanation
Indices: 77273678--77273851 Score: 339
Period size: 87 Copynumber: 2.0 Consensus size: 87
77273668 TCTTGAGAAT
77273678 TGTTAGATAAATCATCAAAAATACAAAAGGAATTAATCTGAAAACAAATCTTTGAGAAGAAAAAG
1 TGTTAGATAAATCATCAAAAATACAAAAGGAATTAATCTGAAAACAAATCTTTGAGAAGAAAAAG
77273743 AATCCAAAGATAGTAAACAGGA
66 AATCCAAAGATAGTAAACAGGA
*
77273765 TGTTAGATAAATCATCAAAAGTACAAAAGGAATTAATCTGAAAACAAATCTTTGAGAAGAAAAAG
1 TGTTAGATAAATCATCAAAAATACAAAAGGAATTAATCTGAAAACAAATCTTTGAGAAGAAAAAG
77273830 AATCCAAAGATAGTAAACAGGA
66 AATCCAAAGATAGTAAACAGGA
77273852 CAAAAATCAG
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.53, C:0.10, G:0.16, T:0.21
Consensus pattern (87 bp):
TGTTAGATAAATCATCAAAAATACAAAAGGAATTAATCTGAAAACAAATCTTTGAGAAGAAAAAG
AATCCAAAGATAGTAAACAGGA
Found at i:77282278 original size:40 final size:41
Alignment explanation
Indices: 77282196--77282283 Score: 160
Period size: 41 Copynumber: 2.2 Consensus size: 41
77282186 ATTTTCCTCT
*
77282196 ATTGATCGAGTAGCCCCCAAACTCGGCCTAGGGTTGTTATC
1 ATTGATCGAGTAGCCCCCAAACTCGGCCTAGGGATGTTATC
77282237 ATTGATCGAGTAGCCCCCAAACTCGG-CTAGGGATGTTATC
1 ATTGATCGAGTAGCCCCCAAACTCGGCCTAGGGATGTTATC
77282277 ATTGATC
1 ATTGATC
77282284 CTCTTGCTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 20 0.43
41 26 0.57
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (41 bp):
ATTGATCGAGTAGCCCCCAAACTCGGCCTAGGGATGTTATC
Found at i:77293049 original size:562 final size:562
Alignment explanation
Indices: 77291979--77293097 Score: 2112
Period size: 562 Copynumber: 2.0 Consensus size: 562
77291969 CAGATCGAAG
77291979 GTCAATCTTGGAAAATACTGAAGCTCCTCTAAGTTGGTCGAATAAATCATCGATTCTCGGCAGTG
1 GTCAATCTTGGAAAATACTGAAGCTCCTCTAAGTTGGTCGAATAAATCATCGATTCTCGGCAGTG
*
77292044 GGTACTTGTTCTTAATCGTCAGTTTGTTCAACTGCCGATAATCGATGCACATCCGCATTGACCCA
66 GGTACTTGTTCTTAATCGTCAGTTTGTTCAACTGCCGATAATCGATGCACATCCACATTGACCCA
77292109 TCTTTCTTCTTTACGAACAACACTGGTGCTCCCCACGGAGACACACTTGGTCTAATGAAGCCTCT
131 TCTTTCTTCTTTACGAACAACACTGGTGCTCCCCACGGAGACACACTTGGTCTAATGAAGCCTCT
77292174 ATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTCCTTCGGTGCCATCCTATAAGGTG
196 ATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTCCTTCGGTGCCATCCTATAAGGTG
* *
77292239 CAATGGACACCAGTGCCATTCCAGGCAATAAGTCGATTCCAAACTCAACCTTTCGGTTCGGGGGC
261 CAATGGACACCAGTGCCATTCCAGGCAACAAGTCGATTCCAAACTCAACCTCTCGGTTCGGGGGC
*
77292304 AAACCCGAAAGCTCCTCTGGAAAAACATCTTGAAAATCCTTGACGGTTCTAACTTTATCCACTGT
326 AAACCCGAAAGCTCCTCTAGAAAAACATCTTGAAAATCCTTGACGGTTCTAACTTTATCCACTGT
* *
77292369 CAGATCCTCAGTTTTTGATTGGCTTACAAATGCCAAATAAGCCTCACATCCCTTTTGAATCCACT
391 CAGATCCTCAGTTTTCGATTGGCTTACAAATGCCAAATAAGCCTCACATCCCTTTCGAATCCACT
* *
77292434 TCTCGGCTCACAATGCCGACACCATATTAGACAGATAATCCCTACATTCGCCTATCACCAAAACC
456 TCTCGGCTCACAATGCCGACACCACATTAGACAGATAATCCCTACACTCGCCTATCACCAAAACC
77292499 TCCTCATCTTTTGTGGTCTTTAACATTATTCGCTTAGAGAAT
521 TCCTCATCTTTTGTGGTCTTTAACATTATTCGCTTAGAGAAT
77292541 GTCAATCTTGGAAAATACTGAAGCTCCTCTAAGTTGGTCGAATAAATCATCGATTCTCGGCAGTG
1 GTCAATCTTGGAAAATACTGAAGCTCCTCTAAGTTGGTCGAATAAATCATCGATTCTCGGCAGTG
77292606 GGTACTTGTTCTTAATCGTCAGTTTGTTCAACTGCCGATAATCGATGCACATCCACATTGACCCA
66 GGTACTTGTTCTTAATCGTCAGTTTGTTCAACTGCCGATAATCGATGCACATCCACATTGACCCA
77292671 TCTTTCTTCTTTACGAACAACACTGGTGCTCCCCACGGAGACACACTTGGTCTAATGAAGCCTCT
131 TCTTTCTTCTTTACGAACAACACTGGTGCTCCCCACGGAGACACACTTGGTCTAATGAAGCCTCT
77292736 ATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTCCTTCGGTGCCATCCTATAAGGTG
196 ATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTCCTTCGGTGCCATCCTATAAGGTG
* *
77292801 CAATGGACACCGGTGCCGTTCCAGGCAACAAGTCGATTCCAAACTCAACCTCTCGGTTCGGGGGC
261 CAATGGACACCAGTGCCATTCCAGGCAACAAGTCGATTCCAAACTCAACCTCTCGGTTCGGGGGC
* *
77292866 AAACCCGGAAGCTCCTCTAGAAAAACATCTTGAAAATCCTTGACGGTTCTAATTTTATCCACTGT
326 AAACCCGAAAGCTCCTCTAGAAAAACATCTTGAAAATCCTTGACGGTTCTAACTTTATCCACTGT
77292931 CAGATCCTCAGTTTTCGATTGGCTTACAAATGCCAAATAAGCCTCACATCCCTTTCGAATCCACT
391 CAGATCCTCAGTTTTCGATTGGCTTACAAATGCCAAATAAGCCTCACATCCCTTTCGAATCCACT
* *
77292996 TCTCGGCTCTCAATGCCGACACCACATTAGACAGATAATCCCTACGCTCGCCTATCACCAAAACC
456 TCTCGGCTCACAATGCCGACACCACATTAGACAGATAATCCCTACACTCGCCTATCACCAAAACC
77293061 TCCTCATCTTTTGTGGTCTTTAACATTATTCGCTTAG
521 TCCTCATCTTTTGTGGTCTTTAACATTATTCGCTTAG
77293098 CAGCACAATC
Statistics
Matches: 543, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
562 543 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (562 bp):
GTCAATCTTGGAAAATACTGAAGCTCCTCTAAGTTGGTCGAATAAATCATCGATTCTCGGCAGTG
GGTACTTGTTCTTAATCGTCAGTTTGTTCAACTGCCGATAATCGATGCACATCCACATTGACCCA
TCTTTCTTCTTTACGAACAACACTGGTGCTCCCCACGGAGACACACTTGGTCTAATGAAGCCTCT
ATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTCCTTCGGTGCCATCCTATAAGGTG
CAATGGACACCAGTGCCATTCCAGGCAACAAGTCGATTCCAAACTCAACCTCTCGGTTCGGGGGC
AAACCCGAAAGCTCCTCTAGAAAAACATCTTGAAAATCCTTGACGGTTCTAACTTTATCCACTGT
CAGATCCTCAGTTTTCGATTGGCTTACAAATGCCAAATAAGCCTCACATCCCTTTCGAATCCACT
TCTCGGCTCACAATGCCGACACCACATTAGACAGATAATCCCTACACTCGCCTATCACCAAAACC
TCCTCATCTTTTGTGGTCTTTAACATTATTCGCTTAGAGAAT
Found at i:77295871 original size:27 final size:26
Alignment explanation
Indices: 77295823--77295882 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
77295813 GCGAGGCTGC
*
77295823 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
77295850 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
77295876 CAGATAT
1 CAGATAT
77295883 ATATATGTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77295927 original size:71 final size:67
Alignment explanation
Indices: 77295850--77295991 Score: 187
Period size: 67 Copynumber: 2.1 Consensus size: 67
77295840 TCACCAGATA
* * * *
77295850 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGTGGAA-GCCACCAGATTGCAGCG
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTG-GCAAGGCCACCAGATTGCAGCG
77295914 AGGCTGC
61 AGGCTGC
*
77295921 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCT
77295986 GC
66 GC
77295988 CAGA
1 CAGA
77295992 ACGCTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
66 3 0.05
67 37 0.57
71 25 0.38
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCT
GC
Found at i:77297560 original size:14 final size:15
Alignment explanation
Indices: 77297529--77297567 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
77297519 ATTATTATAC
*
77297529 TAAAACAATACTAAA
1 TAAAAAAATACTAAA
77297544 TAAAAAAATAC-AAA
1 TAAAAAAATACTAAA
*
77297558 TAAACAAATA
1 TAAAAAAATA
77297568 AACAAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.18
Consensus pattern (15 bp):
TAAAAAAATACTAAA
Found at i:77297907 original size:20 final size:20
Alignment explanation
Indices: 77297882--77297933 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
77297872 ATTATATATA
*
77297882 ATAATAAATAATAAGATAAC
1 ATAATAAATAATAAAATAAC
* *
77297902 ATAATATATAATAAAATAAG
1 ATAATAAATAATAAAATAAC
*
77297922 A-AATGAATAATA
1 ATAATAAATAATA
77297934 TATATAATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
ATAATAAATAATAAAATAAC
Found at i:77297918 original size:28 final size:28
Alignment explanation
Indices: 77297870--77298010 Score: 80
Period size: 28 Copynumber: 5.1 Consensus size: 28
77297860 GTAAATTTTA
* *
77297870 AAATTATATATAATAAT-AAATAATAAGAT
1 AAATAATATAT-ATAATAAAATAAGAA-AT
77297899 AACAT-A-ATATATAATAAAATAAGAAAT
1 AA-ATAATATATATAATAAAATAAGAAAT
* ***
77297926 GAATAATATATATAATAAAATGATTTAAT
1 AAATAATATATATAATAAAAT-AAGAAAT
* *
77297955 ATATAATA-AAATATATAAAA-AA-AAAT
1 AAATAATATATATA-ATAAAATAAGAAAT
* * *
77297981 ATAATAAAATATA-AATAATATAACAAAT
1 A-AATAATATATATAATAAAATAAGAAAT
77298009 AA
1 AA
77298011 TACATAAATA
Statistics
Matches: 88, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
26 11 0.12
27 19 0.22
28 37 0.42
29 19 0.22
30 2 0.02
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (28 bp):
AAATAATATATATAATAAAATAAGAAAT
Found at i:77297919 original size:12 final size:12
Alignment explanation
Indices: 77297904--77298036 Score: 73
Period size: 12 Copynumber: 11.0 Consensus size: 12
77297894 AAGATAACAT
77297904 AATATATAATAA
1 AATATATAATAA
*
77297916 AATAAGAAATGAATAA
1 AAT---ATAT-AATAA
*
77297932 TATATATAATAA
1 AATATATAATAA
77297944 AATGAT-T--T-A
1 AAT-ATATAATAA
77297953 A-TATATAATAA
1 AATATATAATAA
*
77297964 AATATATAAAAA
1 AATATATAATAA
*
77297976 AAAATATAATAA
1 AATATATAATAA
77297988 AATATA-AATAA
1 AATATATAATAA
* *
77297999 TATA-ACAAATAA
1 AATATA-TAATAA
* *
77298011 TACATAAATAAAAA
1 -A-ATATATAATAA
77298025 AATATATAATAA
1 AATATATAATAA
77298037 TTTTTTAAAT
Statistics
Matches: 92, Mismatches: 14, Indels: 30
0.68 0.10 0.22
Matches are distributed among these distances:
7 2 0.02
8 2 0.02
9 2 0.02
10 3 0.03
11 10 0.11
12 49 0.53
13 6 0.07
14 7 0.08
15 4 0.04
16 7 0.08
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (12 bp):
AATATATAATAA
Found at i:77297934 original size:24 final size:23
Alignment explanation
Indices: 77297884--77298000 Score: 61
Period size: 24 Copynumber: 5.2 Consensus size: 23
77297874 TATATATAAT
* *
77297884 AATAA-ATAATAAGAT-AACAT-
1 AATAATATAATAAAATAAAAATG
77297904 AAT-ATATAATAAAATAAGAAATG
1 AATAATATAATAAAATAA-AAATG
*
77297927 AATAATAT-ATATAAT-AAAATG
1 AATAATATAATAAAATAAAAATG
* *
77297948 ATTTAATATATAATAAAATATATAAA-A
1 A-AT-A-ATATAATAAAATA-A-AAATG
* *
77297975 AAAAATATAATAAAATATAAAT-
1 AATAATATAATAAAATAAAAATG
77297997 AATA
1 AATA
77298001 TAACAAATAA
Statistics
Matches: 74, Mismatches: 10, Indels: 24
0.69 0.09 0.22
Matches are distributed among these distances:
19 1 0.01
20 12 0.16
21 7 0.09
22 11 0.15
23 10 0.14
24 21 0.28
25 7 0.09
27 2 0.03
28 3 0.04
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (23 bp):
AATAATATAATAAAATAAAAATG
Found at i:77298000 original size:19 final size:18
Alignment explanation
Indices: 77297978--77298037 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 18
77297968 TATAAAAAAA
77297978 AATATAATAAAATATAAAT
1 AATATAA-AAAATATAAAT
* *
77297997 AATATAACAAATAATACAT
1 AATATAAAAAAT-ATAAAT
77298016 AA-ATAAAAAAATATATAAT
1 AATAT-AAAAAATATA-AAT
77298035 AAT
1 AAT
77298038 TTTTTAAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
18 9 0.27
19 24 0.73
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
AATATAAAAAATATAAAT
Found at i:77298010 original size:16 final size:14
Alignment explanation
Indices: 77297963--77298033 Score: 54
Period size: 16 Copynumber: 4.7 Consensus size: 14
77297953 ATATATAATA
*
77297963 AAATATATAAAAAA
1 AAATATATAAAAAT
77297977 AAATATAATAAAATAT
1 AAATAT-ATAAAA-AT
77297993 AAATAATATAACAAAT
1 AAAT-ATATAA-AAAT
* *
77298009 -AATACATAAATAAAA
1 AAATATAT-AA-AAAT
77298024 AAATATATAA
1 AAATATATAA
77298034 TAATTTTTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
14 9 0.20
15 16 0.35
16 17 0.37
17 4 0.09
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (14 bp):
AAATATATAAAAAT
Found at i:77298033 original size:23 final size:23
Alignment explanation
Indices: 77297973--77298035 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
77297963 AAATATATAA
* *
77297973 AAAAAAATATAATAAAATATAAAT
1 AAAAAAATAT-ATAATACATAAAT
* * * *
77297997 AATATAACAAATAATACATAAAT
1 AAAAAAATATATAATACATAAAT
77298020 AAAAAAATATATAATA
1 AAAAAAATATATAATA
77298036 ATTTTTTAAA
Statistics
Matches: 29, Mismatches: 10, Indels: 1
0.73 0.25 0.03
Matches are distributed among these distances:
23 23 0.79
24 6 0.21
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.25
Consensus pattern (23 bp):
AAAAAAATATATAATACATAAAT
Found at i:77298100 original size:31 final size:30
Alignment explanation
Indices: 77298048--77298121 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 30
77298038 TTTTTAAATG
*
77298048 TATAAATAATGTTTATAATAAAAATAAATGATA
1 TATAAAAAAT-TTTATAAT--AAATAAATGATA
* *
77298081 TATAAAACATTTTA-AATAAATAAATTATA
1 TATAAAAAATTTTATAATAAATAAATGATA
77298110 TATAAAAAATTT
1 TATAAAAAATTT
77298122 AAAAAGGATT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 22 0.59
31 3 0.08
32 4 0.11
33 8 0.22
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (30 bp):
TATAAAAAATTTTATAATAAATAAATGATA
Found at i:77298119 original size:14 final size:14
Alignment explanation
Indices: 77298073--77298120 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
77298063 TAATAAAAAT
*
77298073 AAATGATATATAAA
1 AAATTATATATAAA
* * *
77298087 ACATTTTAAATAAA
1 AAATTATATATAAA
77298101 TAAATTATATATAAA
1 -AAATTATATATAAA
77298116 AAATT
1 AAATT
77298121 TAAAAAGGAT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (14 bp):
AAATTATATATAAA
Found at i:77298318 original size:30 final size:30
Alignment explanation
Indices: 77298284--77298340 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
77298274 ATAATAGCCA
* *
77298284 TTAGGACTAAATTGAAACAAAAATAAAAGG
1 TTAGGACCAAATTAAAACAAAAATAAAAGG
* *
77298314 TTAGGGCCAAATTAAAATAAAAATAAA
1 TTAGGACCAAATTAAAACAAAAATAAA
77298341 TGAAATTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.58, C:0.07, G:0.14, T:0.21
Consensus pattern (30 bp):
TTAGGACCAAATTAAAACAAAAATAAAAGG
Found at i:77301108 original size:27 final size:27
Alignment explanation
Indices: 77300890--77301414 Score: 460
Period size: 27 Copynumber: 19.6 Consensus size: 27
77300880 TACCCTACAG
* * * *
77300890 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
77300917 GGGTATTTCGGTAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
77300944 GGGTATTTCGATAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** *
77300971 GGGTGCTTCGGTAATTTTATAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
77300998 GGGTATTTCGATAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
77301025 GGGTATTTCGGTAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
77301052 GGGTATTTCGGTAATTTT---AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
77301076 GGGTGTTTCGGTTATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
77301103 GGGTGTTTTGATAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
77301130 GGGTGTTTTGGTAATTTCACAAATCG-
1 GGGTATTTCGGTAATTTTACAAATCGA
*
77301156 GGAGTATTTCAGTAATTTTACAAATCGA
1 GG-GTATTTCGGTAATTTTACAAATCGA
* * *
77301184 GGGTATTTCAGTAATTTCAC-AATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
77301210 TGGTATTTCGATAATTTTACAAATTG-
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
77301236 GGGATATTTCGATAATCTTACAAATAGA
1 GGG-TATTTCGGTAATTTTACAAATCGA
* * * * *
77301264 TGGTGTTTCGTTAATTTCACAAATCGC
1 GGGTATTTCGGTAATTTTACAAATCGA
* ** *
77301291 CGGTATTTTAGTAAATTTT-CAAAGCGA
1 GGGTATTTCGGT-AATTTTACAAATCGA
*
77301318 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
77301344 TGGTATTTAGGTGATTTTACAAATCG-
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
77301370 GTGGTATTCCGATAATTTTACAAATTGA
1 G-GGTATTTCGGTAATTTTACAAATCGA
**
77301398 GGGTATTTAAGTAATTT
1 GGGTATTTCGGTAATTT
77301415 CTCTTTATTA
Statistics
Matches: 410, Mismatches: 74, Indels: 28
0.80 0.14 0.05
Matches are distributed among these distances:
24 21 0.05
26 52 0.13
27 325 0.79
28 12 0.03
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:77301415 original size:134 final size:133
Alignment explanation
Indices: 77300916--77301405 Score: 531
Period size: 134 Copynumber: 3.7 Consensus size: 133
77300906 TTACACTACA
* * * * **
77300916 AGGGTATTTCGGTAATTTTACACTACAAGGGTATTTCGATAATTTTACAAATTGAGGGTGCTTCG
1 AGGGTATTTCAGTAATTTTACAAT-CGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCG
* * * * * *
77300981 GTAATTTTATAAATCGAGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCGGTAATTTTACA
65 ATAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAATCG-GGGTATTTCAGTAATTTTACA
*
77301046 AATCA
129 AATCG
* * * * * *
77301051 AGGGTATTTCGGTAATTTT--AATCGAGGGTGTTTCGGTTATTTTACAAATCGAGGGTGTTTTGA
1 AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGA
* * *
77301114 TAATTTTACAAATTGAGGGTGTTTTGGTAATTTCACAAATCGGGAGTATTTCAGTAATTTTACAA
66 TAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAATCGGG-GTATTTCAGTAATTTTACAA
77301179 ATCG
130 ATCG
* * * *
77301183 AGGGTATTTCAGTAATTTCACAATTGATGGTATTTCGATAATTTTACAAATTG-GGGATATTTCG
1 AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGATAATTTTACAAATCGAGGG-TATTTCG
* * * * * * *
77301247 ATAATCTTACAAATAGATGGTGTTTCGTTAATTTCACAAATCGCCGGTATTTTAGTAAATTTT-C
65 ATAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAATCG-GGGTATTTCAGT-AATTTTAC
*
77301311 AAAGCG
128 AAATCG
* * * * *
77301317 AGGGTATTTCAGTAATTTTACAATCGATGGTATTTAGGTGATTTTACAAATCG-GTGGTATTCCG
1 AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGATAATTTTACAAATCGAG-GGTATTTCG
77301381 ATAATTTTACAAATTGAGGGTATTT
65 ATAATTTTACAAATTGAGGGTATTT
77301406 AAGTAATTTC
Statistics
Matches: 301, Mismatches: 47, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
131 2 0.01
132 107 0.36
133 5 0.02
134 159 0.53
135 28 0.09
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (133 bp):
AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGA
TAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAATCGGGGTATTTCAGTAATTTTACAAA
TCG
Found at i:77301823 original size:28 final size:28
Alignment explanation
Indices: 77301744--77301823 Score: 133
Period size: 28 Copynumber: 2.9 Consensus size: 28
77301734 CCCAATCTCG
* *
77301744 TTCACATGGCCCATCAGGCCCAAACACA
1 TTCATATGGCCCATCAGGCCCAACCACA
*
77301772 TTCATATGGCCTATCAGGCCCAACCACA
1 TTCATATGGCCCATCAGGCCCAACCACA
77301800 TTCATATGGCCCATCAGGCCCAAC
1 TTCATATGGCCCATCAGGCCCAAC
77301824 TACTTCCCAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.29, C:0.38, G:0.15, T:0.19
Consensus pattern (28 bp):
TTCATATGGCCCATCAGGCCCAACCACA
Found at i:77309649 original size:31 final size:31
Alignment explanation
Indices: 77309606--77309669 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
77309596 CCTTTTCATA
*
77309606 TTTCATAATTCATAACAGTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
77309637 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
77309668 TT
1 TT
77309670 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:77309915 original size:24 final size:24
Alignment explanation
Indices: 77309863--77310007 Score: 211
Period size: 24 Copynumber: 6.0 Consensus size: 24
77309853 ACTTTATCAT
*
77309863 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
77309888 ATAACTGGGGCAAAAGCCTTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
77309912 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
77309936 ATAACTGGGGCATAAGCCTTTTTTA
1 ATAACTGGGGCATAAGCC-CTTTTA
77309961 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77309985 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
77310008 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
24 75 0.69
25 34 0.31
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:77309960 original size:49 final size:48
Alignment explanation
Indices: 77309863--77310007 Score: 220
Period size: 49 Copynumber: 3.0 Consensus size: 48
77309853 ACTTTATCAT
* *
77309863 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCTTTTTA
*
77309912 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCTTTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC-TTTTTA
*
77309961 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCTTTTT
77310008 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
48 30 0.34
49 59 0.66
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCTTTTTA
Found at i:77309984 original size:73 final size:73
Alignment explanation
Indices: 77309863--77310008 Score: 240
Period size: 73 Copynumber: 2.0 Consensus size: 73
77309853 ACTTTATCAT
* *
77309863 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCTTTTTAATAACTGGGGCATAAG
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
77309928 CCCTTTTG
66 CCCTTTTG
* *
77309936 ATAACTGG-GGCATAAGCCTTTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
77310000 GCCCTTTTG
65 GCCCTTTTG
77310009 CACTTCCTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
72 4 0.06
73 64 0.94
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (73 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
CCCTTTTG
Found at i:77310154 original size:25 final size:25
Alignment explanation
Indices: 77310120--77310167 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
77310110 ATATTTAAAC
*
77310120 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAATGGTCATTTTTA
77310145 CCTAGGGGTAAAATGGTCATTTT
1 CCTAGGGGTAAAATGGTCATTTT
77310168 CATATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (25 bp):
CCTAGGGGTAAAATGGTCATTTTTA
Found at i:77317079 original size:31 final size:31
Alignment explanation
Indices: 77317041--77317099 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
77317031 TCATATTTCA
77317041 TATTTCATAACACTGGGCCGAAGCCTTTTTG
1 TATTTCATAACACTGGGCCGAAGCCTTTTTG
**
77317072 TATTTCATATTACTGGGCCGAAGCCTTT
1 TATTTCATAACACTGGGCCGAAGCCTTT
77317100 ACTGTAAACG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (31 bp):
TATTTCATAACACTGGGCCGAAGCCTTTTTG
Found at i:77317344 original size:24 final size:24
Alignment explanation
Indices: 77317293--77317461 Score: 250
Period size: 24 Copynumber: 7.0 Consensus size: 24
77317283 GCTTTATCAT
*
77317293 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
77317318 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
77317342 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
77317366 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77317390 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
* *
77317415 ATAATTGGGGCATGAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
77317439 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
77317462 GCACTTCCTT
Statistics
Matches: 132, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
24 98 0.74
25 34 0.26
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:77317346 original size:49 final size:48
Alignment explanation
Indices: 77317293--77317461 Score: 250
Period size: 49 Copynumber: 3.5 Consensus size: 48
77317283 GCTTTATCAT
* *
77317293 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
*
77317342 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
77317390 ATAACTGGGGCATAAGCCCTTTTTAATAATTGGGGCATGAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCCTTTTA
*
77317439 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
77317462 GCACTTCCTT
Statistics
Matches: 111, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
48 55 0.50
49 56 0.50
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:77317427 original size:73 final size:72
Alignment explanation
Indices: 77317293--77317461 Score: 250
Period size: 73 Copynumber: 2.3 Consensus size: 72
77317283 GCTTTATCAT
*
77317293 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
*
77317357 GCCCTTTTG
64 GCCCTTTTA
* * *
77317366 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAATTGGGGCATGAG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCC-TTTTAATAACTGGGGCATAAG
77317431 CCCTTTTA
65 CCCTTTTA
*
77317439 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
77317462 GCACTTCCTT
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
72 28 0.32
73 60 0.68
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTTA
Found at i:77317536 original size:20 final size:20
Alignment explanation
Indices: 77317511--77317577 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
77317501 TTATGAATAC
77317511 ATCATGTGTATATCATACAT
1 ATCATGTGTATATCATACAT
77317531 ATCATGTGTATATCATACAT
1 ATCATGTGTATATCATACAT
* *
77317551 GTCATGTGCATATCATACAT
1 ATCATGTGTATATCATACAT
77317571 ATCATGT
1 ATCATGT
77317578 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (20 bp):
ATCATGTGTATATCATACAT
Found at i:77317656 original size:25 final size:25
Alignment explanation
Indices: 77317614--77317661 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77317604 ATATTTAAAC
* * *
77317614 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77317639 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
77317662 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:77324308 original size:44 final size:42
Alignment explanation
Indices: 77324241--77324355 Score: 142
Period size: 44 Copynumber: 2.7 Consensus size: 42
77324231 TTTAGATATG
* * * * *
77324241 TGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCG-ATT
1 TGATTTTGTGTAAGACCATGTCTGGAACATTGACATCGTATT
77324282 TGAGATTTATGTGTAAGACCATGTCTGGAACATTGACATCGTATT
1 T--GATTT-TGTGTAAGACCATGTCTGGAACATTGACATCGTATT
*
77324327 TGATTTTGTGTAAGACCCTGTCTGGAACA
1 TGATTTTGTGTAAGACCATGTCTGGAACA
77324356 GTGTAATGCT
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
41 1 0.02
42 22 0.34
43 10 0.16
44 27 0.42
45 4 0.06
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
TGATTTTGTGTAAGACCATGTCTGGAACATTGACATCGTATT
Found at i:77338701 original size:19 final size:19
Alignment explanation
Indices: 77338677--77338721 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
77338667 GAACTTTAAT
*
77338677 ATGTTATGAA-TGATTACTA
1 ATGTTATCAATTG-TTACTA
77338696 ATGTTATCAATTTGTTACTA
1 ATGTTATCAA-TTGTTACTA
77338716 ATGTTA
1 ATGTTA
77338722 GCTTATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 9 0.39
20 12 0.52
21 2 0.09
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (19 bp):
ATGTTATCAATTGTTACTA
Found at i:77366657 original size:37 final size:37
Alignment explanation
Indices: 77366598--77366706 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
77366588 AGCTCAGACG
* *
77366598 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
77366635 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
77366672 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
77366707 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:77366976 original size:48 final size:48
Alignment explanation
Indices: 77366852--77367036 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
77366842 GCACATCGCC
* **
77366852 TACATATTTCACACTAGCCATTCAACTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
77366902 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
77366950 TACATATTTCACATTAGTCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
77366998 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
77367037 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 2 0.02
50 40 0.32
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:77367041 original size:98 final size:97
Alignment explanation
Indices: 77366852--77367035 Score: 291
Period size: 98 Copynumber: 1.9 Consensus size: 97
77366842 GCACATCGCC
*
77366852 TACATATTTCACACTAGCCATTCAACTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCAACTTTACCACATATACATATCTCA-ATACATATTTCACATT
77366917 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
* * **
77366950 TACATATTTCACATTAGTCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCAACTTTACCACATATACATATCTCAATACATATTTCACATTG
77367013 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
77367036 ATGCATGTTC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 36 0.45
98 43 0.54
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCAACTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:77367085 original size:47 final size:47
Alignment explanation
Indices: 77367006--77367199 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
77366996 CATACATATT
* * * *
77367006 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
77367053 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
77367100 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
77367147 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
77367194 TCACAT
1 TCACAT
77367200 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:77367126 original size:22 final size:22
Alignment explanation
Indices: 77367099--77367170 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
77367089 GCTCACATTC
77367099 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
77367121 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
77367145 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
77367168 ATC
1 ATC
77367171 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:77369912 original size:40 final size:40
Alignment explanation
Indices: 77369880--77370768 Score: 1652
Period size: 40 Copynumber: 22.2 Consensus size: 40
77369870 CCAGCATGAT
* * * *
77369880 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
77369920 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77369960 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370000 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370040 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370080 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370120 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370160 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370200 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370240 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370280 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370320 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370360 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370400 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370440 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370480 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370520 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
77370560 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370600 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
77370640 TGCTCTTCGGGACTTAGTCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
77370680 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
77370720 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
77370760 TGCTCTTCG
1 TGCTCTTCG
77370769 CACGAATGCT
Statistics
Matches: 832, Mismatches: 17, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 832 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:77370773 original size:15 final size:15
Alignment explanation
Indices: 77370753--77370783 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
77370743 TACATCACTA
77370753 GCACGAATGCTCTTC
1 GCACGAATGCTCTTC
77370768 GCACGAATGCTCTTC
1 GCACGAATGCTCTTC
77370783 G
1 G
77370784 GGACTTAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.32, G:0.23, T:0.26
Consensus pattern (15 bp):
GCACGAATGCTCTTC
Found at i:77372165 original size:14 final size:14
Alignment explanation
Indices: 77372123--77372165 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
77372113 TTTTATATAT
77372123 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
*
77372136 TCATAATGGTTTAA
1 TTATAATGGTTTAA
77372150 TTATAATGGTTTAA
1 TTATAATGGTTTAA
77372164 TT
1 TT
77372166 CATCGTTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 6 0.22
14 21 0.78
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.51
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:77373009 original size:43 final size:43
Alignment explanation
Indices: 77372961--77373095 Score: 120
Period size: 43 Copynumber: 3.2 Consensus size: 43
77372951 AGAACATGAC
* *
77372961 CTTTAGCTGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCATGTT
1 CTTTAGCTGCGTTTTTGAGAAAAGAGCCGCTAAAAGTCATGTT
* * **
77373004 CTTTAG-T--GTTGTTTGTATGAAAAGTGCCGCTAAAAGTAACATT
1 CTTTAGCTGCGTT-TTTG-A-GAAAAGAGCCGCTAAAAGTCATGTT
*
77373047 CTTTAGCAGCGCTTTATT-A-AAAA-AGCCGCTAAAAGTCATGTT
1 CTTTAGCTGCG-TTT-TTGAGAAAAGAGCCGCTAAAAGTCATGTT
77373089 CTTTAGC
1 CTTTAGC
77373096 AAAATGGTAG
Statistics
Matches: 74, Mismatches: 10, Indels: 17
0.73 0.10 0.17
Matches are distributed among these distances:
40 3 0.04
41 4 0.05
42 24 0.32
43 36 0.49
45 1 0.01
46 2 0.03
47 4 0.05
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (43 bp):
CTTTAGCTGCGTTTTTGAGAAAAGAGCCGCTAAAAGTCATGTT
Found at i:77374716 original size:19 final size:18
Alignment explanation
Indices: 77374681--77374728 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
77374671 AATTCACATC
*
77374681 TCATTTCATCATTTCATATT
1 TCATTTC-TCATATCATA-T
77374701 TCATTTCTCATATCATAT
1 TCATTTCTCATATCATAT
77374719 TCATTTCTCA
1 TCATTTCTCA
77374729 ACTTTGTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 11 0.41
19 9 0.33
20 7 0.26
ACGTcount: A:0.25, C:0.23, G:0.00, T:0.52
Consensus pattern (18 bp):
TCATTTCTCATATCATAT
Found at i:77380383 original size:40 final size:40
Alignment explanation
Indices: 77380283--77380459 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
77380273 CGGATGATAA
* * *
77380283 CCGGGATAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
77380323 CCGGGCTAAG-CCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
77380362 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
77380402 CCGGGCTAAGTCCCGAAGGAATTTGAGCGAG-TAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
77380442 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
77380460 TACCAGGTTG
Statistics
Matches: 123, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 51 0.41
40 72 0.59
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77380448 original size:79 final size:79
Alignment explanation
Indices: 77380283--77380459 Score: 225
Period size: 79 Copynumber: 2.2 Consensus size: 79
77380273 CGGATGATAA
* * * * *
77380283 CCGGGATAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGAATTCGA
77380348 GCGAGTTACTATAT
66 GCGAGTTACTATAT
* *
77380362 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGAATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGAATTC
*
77380426 GAGCGAG-TAGTTATAT
64 GAGCGAGTTA-CTATAT
*
77380442 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
77380460 TACCAGGTTG
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
78 2 0.02
79 60 0.70
80 24 0.28
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGAATTCGA
GCGAGTTACTATAT
Found at i:77411177 original size:16 final size:19
Alignment explanation
Indices: 77411129--77411183 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 19
77411119 TTTAGTCATA
77411129 TAATAAATTATTAATATAAT
1 TAATAAATTATTAATAT-AT
77411149 TAATATAATTTATT-AT-T-T
1 TAATA-AA-TTATTAATATAT
77411167 TAATAAATTATTTAATA
1 TAATAAATTA-TTAATA
77411184 ATTGAATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 11
0.73 0.00 0.27
Matches are distributed among these distances:
16 3 0.10
17 4 0.13
18 8 0.27
20 6 0.20
21 4 0.13
22 5 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATAAATTATTAATATAT
Found at i:77411204 original size:34 final size:37
Alignment explanation
Indices: 77411129--77411219 Score: 102
Period size: 34 Copynumber: 2.5 Consensus size: 37
77411119 TTTAGTCATA
77411129 TAATAAATTATTAATATAATTAATATAATTTATTATTT
1 TAATAAATTATTAATATAATTAATAT-ATTTATTATTT
* *
77411167 TAATAAATTATTTA-ATAATTGA-AT-TTTATT-TTAT
1 TAATAAATTATTAATATAATTAATATATTTATTATT-T
*
77411201 TAATAAATT-TTAAAATAAT
1 TAATAAATTATTAATATAAT
77411220 AATTTTAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
33 5 0.10
34 21 0.44
36 2 0.04
37 7 0.15
38 13 0.27
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (37 bp):
TAATAAATTATTAATATAATTAATATATTTATTATTT
Found at i:77411212 original size:18 final size:17
Alignment explanation
Indices: 77411147--77411210 Score: 53
Period size: 18 Copynumber: 3.7 Consensus size: 17
77411137 TATTAATATA
77411147 ATTAATATAATTTATTATT
1 ATTAATA-AATTTATT-TT
77411166 -TTAATAAA-TTA-TTT
1 ATTAATAAATTTATTTT
* *
77411180 AATAATTGAATTTTATTTT
1 ATTAA-T-AAATTTATTTT
77411199 ATTAATAAATTT
1 ATTAATAAATTT
77411211 TAAAATAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 12
0.69 0.08 0.23
Matches are distributed among these distances:
14 2 0.06
15 4 0.11
16 4 0.11
17 9 0.25
18 10 0.28
19 7 0.19
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
ATTAATAAATTTATTTT
Found at i:77411229 original size:13 final size:15
Alignment explanation
Indices: 77411201--77411232 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
77411191 TTTATTTTAT
77411201 TAATAAATTTTAAAA
1 TAATAAATTTTAAAA
77411216 TAAT-AATTTT-AAA
1 TAATAAATTTTAAAA
77411229 TAAT
1 TAAT
77411233 CTTCTTCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 6 0.35
15 4 0.24
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAATAAATTTTAAAA
Found at i:77419717 original size:22 final size:22
Alignment explanation
Indices: 77419675--77419723 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
77419665 CAAAATTAAG
77419675 TTTTCTCTATAAAAATACAAGT
1 TTTTCTCTATAAAAATACAAGT
*
77419697 ATTTT-TCTAT-AAAATCTCAAGT
1 -TTTTCTCTATAAAAAT-ACAAGT
77419719 TTTTC
1 TTTTC
77419724 CCTTTTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
21 9 0.39
22 10 0.43
23 4 0.17
ACGTcount: A:0.35, C:0.14, G:0.04, T:0.47
Consensus pattern (22 bp):
TTTTCTCTATAAAAATACAAGT
Found at i:77422916 original size:57 final size:58
Alignment explanation
Indices: 77422798--77422921 Score: 144
Period size: 57 Copynumber: 2.2 Consensus size: 58
77422788 ATTACAGAAG
* * * * * * *
77422798 GGATTGAGCCTGGACTGGTAATCCTGATATAAGCTCTCTTGAGCATATGTTATAGATA
1 GGATTTAGCCCGGACGGGTAATCCTGATATAAGCTCTCTTAAGCATATGTTAGAAACA
* *
77422856 GGATTTAGCCCGGACGGGTAATCGTGAT-TAAGCTCT-TATAAGCATATGTTGGAAACA
1 GGATTTAGCCCGGACGGGTAATCCTGATATAAGCTCTCT-TAAGCATATGTTAGAAACA
77422913 GGATTTAGC
1 GGATTTAGC
77422922 TTGAACAAGT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
56 1 0.02
57 31 0.55
58 24 0.43
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (58 bp):
GGATTTAGCCCGGACGGGTAATCCTGATATAAGCTCTCTTAAGCATATGTTAGAAACA
Found at i:77443365 original size:6 final size:6
Alignment explanation
Indices: 77443331--77443380 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
77443321 TATAAACACC
* * *
77443331 TATTATT TATTTT TAATTTT TAATTT TATTTT TATCTT TATTTA TATTTT
1 TATT-TT TATTTT T-ATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
77443381 GAAATTACTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
6 26 0.72
7 10 0.28
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (6 bp):
TATTTT
Found at i:77450866 original size:57 final size:57
Alignment explanation
Indices: 77450760--77450870 Score: 132
Period size: 57 Copynumber: 1.9 Consensus size: 57
77450750 GGTGTTACAC
* * * ***
77450760 AAGCTCTTTTGAGCATATGTTATAAATAGGATTTAGCCCGAATGGGTAATCCTGATT
1 AAGCTCTTATGAGCATATGTTAGAAACAGGATTTAGCCCGAACAAGTAATCCTGATT
* ** *
77450817 AAGCTCTTATGAGCATATGTTGGAAACAGGATTTAGCTTGGACAAGTAATCCTG
1 AAGCTCTTATGAGCATATGTTAGAAACAGGATTTAGCCCGAACAAGTAATCCTG
77450871 TTATATGATA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
57 44 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (57 bp):
AAGCTCTTATGAGCATATGTTAGAAACAGGATTTAGCCCGAACAAGTAATCCTGATT
Found at i:77456698 original size:33 final size:32
Alignment explanation
Indices: 77456649--77456712 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
77456639 CTTGCTGCAA
* *
77456649 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
77456682 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
77456713 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:77456726 original size:27 final size:26
Alignment explanation
Indices: 77456674--77456733 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
77456664 ACATATATAT
*
77456674 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
77456700 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
77456727 ATATCTG
1 ATATCTG
77456734 GCAACCTCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:77459579 original size:46 final size:46
Alignment explanation
Indices: 77459529--77459884 Score: 331
Period size: 46 Copynumber: 7.7 Consensus size: 46
77459519 TTGAGCATCC
77459529 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * * *
77459575 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
77459622 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * * *
77459668 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
77459715 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * * *
77459761 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
*
77459808 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* *
77459854 GAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
77459885 GGGGCGGGTT
Statistics
Matches: 250, Mismatches: 33, Indels: 54
0.74 0.10 0.16
Matches are distributed among these distances:
42 6 0.02
43 12 0.05
45 9 0.04
46 112 0.45
47 84 0.34
48 9 0.04
50 12 0.05
51 6 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:77459644 original size:47 final size:47
Alignment explanation
Indices: 77459575--77459833 Score: 286
Period size: 47 Copynumber: 5.6 Consensus size: 47
77459565 GCGAATGTCT
77459575 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
* * * * *
77459622 GAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA--TCC
77459668 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
* * * * *
77459715 GAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA--TCC
77459761 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
77459808 GAACTCGTTGAGTTGAGTCCGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
77459834 ACTTATGGAT
Statistics
Matches: 174, Mismatches: 20, Indels: 36
0.76 0.09 0.16
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 4 0.02
46 62 0.36
47 88 0.51
48 4 0.02
49 6 0.03
50 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
Found at i:77459682 original size:93 final size:93
Alignment explanation
Indices: 77459523--77459879 Score: 687
Period size: 93 Copynumber: 3.8 Consensus size: 93
77459513 GGATGGTTGA
77459523 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
77459588 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
77459616 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
77459681 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
77459709 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
77459774 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
77459802 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
*
77459867 TGAGTCCAAGTTC
66 TGAGTCCGAGTTC
77459880 ACTTAGGGGC
Statistics
Matches: 261, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 261 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:77462955 original size:45 final size:45
Alignment explanation
Indices: 77462895--77462981 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
77462885 TATGTAATCT
* *
77462895 GAACTCCTTGTGTTGTGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
*
77462940 GAACTCATTGAGTTGTGGTCTGAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACA
77462982 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
Found at i:77470624 original size:28 final size:28
Alignment explanation
Indices: 77470580--77470678 Score: 128
Period size: 28 Copynumber: 3.5 Consensus size: 28
77470570 GATAAGTTTA
*
77470580 GCACTTAGTGTGAGAGACATTGGATATG
1 GCACTTAGTGTGCGAGACATTGGATATG
* *
77470608 GCATTTAGTGTGCGAGACATTGAATATG
1 GCACTTAGTGTGCGAGACATTGGATATG
* *
77470636 GCACATAGTGTGCGAGACA-TCGAGTATG
1 GCACTTAGTGTGCGAGACATTGGA-TATG
*
77470664 GCCCTTAGTGTGCGA
1 GCACTTAGTGTGCGA
77470679 AATATCGAGT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 2 0.03
28 59 0.97
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.27
Consensus pattern (28 bp):
GCACTTAGTGTGCGAGACATTGGATATG
Found at i:77470685 original size:28 final size:28
Alignment explanation
Indices: 77470580--77470690 Score: 125
Period size: 28 Copynumber: 4.0 Consensus size: 28
77470570 GATAAGTTTA
* *
77470580 GCACTTAGTGTGAGAGACATTG-GATATG
1 GCACTTAGTGTGCGAGACATCGAG-TATG
* * *
77470608 GCATTTAGTGTGCGAGACATTGAATATG
1 GCACTTAGTGTGCGAGACATCGAGTATG
*
77470636 GCACATAGTGTGCGAGACATCGAGTATG
1 GCACTTAGTGTGCGAGACATCGAGTATG
* * *
77470664 GCCCTTAGTGTGCGAAATATCGAGTAT
1 GCACTTAGTGTGCGAGACATCGAGTAT
77470691 TCAATGACAT
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (28 bp):
GCACTTAGTGTGCGAGACATCGAGTATG
Found at i:77477444 original size:25 final size:25
Alignment explanation
Indices: 77477410--77477460 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
77477400 CGGTAAAGTA
77477410 CCAGGGACTAACTCAATGCCAAACT
1 CCAGGGACTAACTCAATGCCAAACT
77477435 CCAGGGACTAACTCAATGCCAAACT
1 CCAGGGACTAACTCAATGCCAAACT
77477460 C
1 C
77477461 AACTTCTCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.33, G:0.16, T:0.16
Consensus pattern (25 bp):
CCAGGGACTAACTCAATGCCAAACT
Found at i:77477853 original size:38 final size:38
Alignment explanation
Indices: 77477802--77477877 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
77477792 CATCAAGTCA
**
77477802 GCAGGAATTCAATAACCTCTAATCATTAAAGGACATTT
1 GCAGGAAAACAATAACCTCTAATCATTAAAGGACATTT
77477840 GCAGGAAAACAATAACCTCTAATCATTAAAGGACATTT
1 GCAGGAAAACAATAACCTCTAATCATTAAAGGACATTT
77477878 ATTACATACT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.26
Consensus pattern (38 bp):
GCAGGAAAACAATAACCTCTAATCATTAAAGGACATTT
Found at i:77488592 original size:96 final size:97
Alignment explanation
Indices: 77488446--77488828 Score: 467
Period size: 96 Copynumber: 3.9 Consensus size: 97
77488436 GACCATGGCG
* * * * * * *
77488446 ATATGAGAGCCAGTGTAAGACCTTATTTGGGACATGGCATCGGCCTTG-ATAT-GTGTCAGTGTA
1 ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAATATAGAGCCAGTGTA
* * *
77488509 AGACCATGTTTGGGACATGGAATCGGCATCAGT
66 AGACCATGTTTGGAACATGGCATCGGCAT-TGT
* * *
77488542 ATATGTGAGCCAGTGTAAGACCATGTCTGGGAGATGGCATCGGCCTTGATATATGTGAGCCAGTG
1 ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-ATAT-AGAGCCAGTG
*
77488607 TAAGACCATGTTTAGAACATGGCATCGGCATTGT
64 TAAGACCATGTTTGGAACATGGCATCGGCATTGT
* *
77488641 -TATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCCTC-AATATACGAGCCAGTGT
1 ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAATATA-GAGCCAGTGT
77488704 AAGACCATGTTTGGAACATGGCATCGGCATTGTT
65 AAGACCATGTTTGGAACATGGCATCGGCATTG-T
* *
77488738 ATACGT--GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATATGAGAGCCAGT
1 ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGA-ATAT-AGAGCCAGT
77488800 GTAAGACCATGTTT-GAGACATGGCATCGG
63 GTAAGACCATGTTTGGA-ACATGGCATCGG
77488829 TATTTTACCC
Statistics
Matches: 254, Mismatches: 21, Indels: 22
0.86 0.07 0.07
Matches are distributed among these distances:
96 122 0.48
97 6 0.02
98 88 0.35
99 3 0.01
100 35 0.14
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (97 bp):
ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAATATAGAGCCAGTGTA
AGACCATGTTTGGAACATGGCATCGGCATTGT
Found at i:77488664 original size:48 final size:48
Alignment explanation
Indices: 77488447--77488828 Score: 408
Period size: 48 Copynumber: 7.9 Consensus size: 48
77488437 ACCATGGCGA
* * * * *
77488447 TATGAGAGCCAGTGTAAGACCTTATTTGGGACATGGCATCGGCCTTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGT
* * *
77488495 TATGT--GTCAGTGTAAGACCATGTTTGGGACATGGAATCGGCATCAGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT-TGT
* * *
77488542 ATATGTGAGCCAGTGTAAGACCATGTCTGGGAGATGGCATCGGCCTTGAT
1 -TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG-T
* *
77488592 ATATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTGT
1 -TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGT
* * * * ***
77488641 TATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCCTCAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGT
** *
77488689 TATACGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGT
** * * * **
77488737 TATACGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG-T
* *
77488786 ATATGAGAGCCAGTGTAAGACCATGTTTGAGACATGGCATCGG
1 -TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG
77488829 TATTTTACCC
Statistics
Matches: 279, Mismatches: 48, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
46 33 0.12
47 1 0.00
48 129 0.46
49 3 0.01
50 113 0.41
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGT
Found at i:77488710 original size:146 final size:146
Alignment explanation
Indices: 77488446--77488828 Score: 443
Period size: 146 Copynumber: 2.6 Consensus size: 146
77488436 GACCATGGCG
* * * * * *
77488446 ATATGAGAGCCAGTGTAAGACCTTATTTGGGACATGGCATCGGCCTTGATATGT--GTCAGTGTA
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGTGAGCCAGTGTA
* * ** *
77488509 AGACCATGTTTGGGACATGGAATCGGCATCAGTATATGTGAGCCAGTGTAAGACCATGTCTGGGA
66 AGACCATG-TTAGGACATGGCATCGGCATCAG-ATATACGAGCCAGTGTAAGACCATGTCTGGAA
* *
77488574 GATGGCATCGGCCTTGAT
129 CATGGCATCGGCATTGAT
* *
77488592 ATATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTGTTATGTGAGCCAGTGTA
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGTGAGCCAGTGTA
* * *
77488657 AGACCATGTCTAGGACATGGCATTGGCCTCA-ATATACGAGCCAGTGTAAGACCATGTTTGGAAC
66 AGACCATGT-TAGGACATGGCATCGGCATCAGATATACGAGCCAGTGTAAGACCATGTCTGGAAC
*
77488721 ATGGCATCGGCATTGTT
130 ATGGCATCGGCATTGAT
* * * ** *
77488738 ATACGT--GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATATGAGAGCCAGTG
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG-T-TATGTGAGCCAGTG
*
77488801 TAAGACCATGTTTGAGACATGGCATCGG
64 TAAGACCATGTTAG-GACATGGCATCGG
77488829 TATTTTACCC
Statistics
Matches: 202, Mismatches: 29, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
144 34 0.17
145 3 0.01
146 131 0.65
147 1 0.00
148 33 0.16
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (146 bp):
ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGTGAGCCAGTGTA
AGACCATGTTAGGACATGGCATCGGCATCAGATATACGAGCCAGTGTAAGACCATGTCTGGAACA
TGGCATCGGCATTGAT
Found at i:77494809 original size:124 final size:124
Alignment explanation
Indices: 77494584--77494832 Score: 428
Period size: 124 Copynumber: 2.0 Consensus size: 124
77494574 ATCCTATACA
* *
77494584 TGCCCTTACAACCATAATTGATTTACCATACAGACCAACATAGGCCAATGGATAGTGTGAGTGAT
1 TGCCATTACAACCATAATTGATTTACCATACAGACCAACATAGGCCAACGGATAGTGTGAGTGAT
*
77494649 CTCCGCCAAGCTTCCAATCCAACGAGCTTTCGATTTACTATAAAACAGGGAAATAAAAC
66 CTCCGCCAAGCTTCCAAACCAACGAGCTTTCGATTTACTATAAAACAGGGAAATAAAAC
* * *
77494708 TGCCATTACAACCATAATTGATTTACCATATAGACCAATATAGGCCGACGGATAGTGTGAGTGAT
1 TGCCATTACAACCATAATTGATTTACCATACAGACCAACATAGGCCAACGGATAGTGTGAGTGAT
77494773 CTCCGCCAAGCTTCCAAACCAACGAGC-TTCTGATTTACTATAAAACAGGGAAATAAAAC
66 CTCCGCCAAGCTTCCAAACCAACGAGCTTTC-GATTTACTATAAAACAGGGAAATAAAAC
77494832 T
1 T
77494833 AAGCATAAAA
Statistics
Matches: 118, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
123 3 0.03
124 115 0.97
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.24
Consensus pattern (124 bp):
TGCCATTACAACCATAATTGATTTACCATACAGACCAACATAGGCCAACGGATAGTGTGAGTGAT
CTCCGCCAAGCTTCCAAACCAACGAGCTTTCGATTTACTATAAAACAGGGAAATAAAAC
Found at i:77495880 original size:17 final size:17
Alignment explanation
Indices: 77495834--77495883 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
77495824 TTTTTATCAT
*
77495834 TTATCATTTGTCGGGCA
1 TTATCATTTATCGGGCA
* *
77495851 TTATAATTGATCGGGCA
1 TTATCATTTATCGGGCA
77495868 CTT-TCATTTATCGGGC
1 -TTATCATTTATCGGGC
77495884 TTTAACGAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (17 bp):
TTATCATTTATCGGGCA
Found at i:77514228 original size:66 final size:66
Alignment explanation
Indices: 77514157--77514284 Score: 177
Period size: 66 Copynumber: 1.9 Consensus size: 66
77514147 ATCCTAATAC
* * *
77514157 AGTGAAAGAAAGAGAGAACATGAGAAAGATTCTGTATACTTTGGC-AGTAGGAAGACTCATGTGG
1 AGTGAAAGAAAAAGAAAACATGAGAAAGATTCTGTATACTTTGGCTA-TAAGAAGACTCATGTGG
77514221 AA
65 AA
* * * *
77514223 AGTGAAAGAAAAAGAAAACATGAGAAAGGTTTTGTATGCTTTGGCTATAAGAAGTCTCATGT
1 AGTGAAAGAAAAAGAAAACATGAGAAAGATTCTGTATACTTTGGCTATAAGAAGACTCATGT
77514285 ATGTTATGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 53 0.98
67 1 0.02
ACGTcount: A:0.41, C:0.09, G:0.27, T:0.24
Consensus pattern (66 bp):
AGTGAAAGAAAAAGAAAACATGAGAAAGATTCTGTATACTTTGGCTATAAGAAGACTCATGTGGA
A
Found at i:77520169 original size:40 final size:40
Alignment explanation
Indices: 77520099--77520313 Score: 326
Period size: 40 Copynumber: 5.4 Consensus size: 40
77520089 AAGCCAAGTA
* * * *
77520099 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
77520138 CCTTCGGGACATAACCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77520178 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77520218 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77520258 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77520298 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
77520314 GGTTATCAAC
Statistics
Matches: 162, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 12 0.07
40 150 0.93
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77521596 original size:17 final size:17
Alignment explanation
Indices: 77521574--77521610 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
77521564 CATGAGAGCC
* *
77521574 TTTCTTTTTTTTTTCTT
1 TTTCTTTCTTTTTTATT
77521591 TTTCTTTCTTTTTTATT
1 TTTCTTTCTTTTTTATT
77521608 TTT
1 TTT
77521611 TCATCATCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (17 bp):
TTTCTTTCTTTTTTATT
Found at i:77528242 original size:40 final size:40
Alignment explanation
Indices: 77528184--77528361 Score: 243
Period size: 40 Copynumber: 4.5 Consensus size: 40
77528174 AAGTCAAGTA
* * * *
77528184 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
77528223 CCTTCAGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
77528263 CCTTCGAGACTTAGCCCGGAAATAGTAACTCGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77528303 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77528343 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77528362 TTATCATCCA
Statistics
Matches: 122, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 11 0.09
40 111 0.91
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77537977 original size:47 final size:48
Alignment explanation
Indices: 77537822--77537992 Score: 182
Period size: 49 Copynumber: 3.5 Consensus size: 48
77537812 GTTGAGTGTT
* *
77537822 AGTGTAAGACCTATCTGGGACATGGCATCGACATCAATAGATGAGAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATCGACATCGAT-GATGAAAGCC
* * * * * * *
77537871 AGTGTAAAACCTGTCTGCGACACGGCATTGGCATCGATGTATGAAAGTC
1 AGTGTAAGACCTATCTGGGACATGGCATCGACATCGATG-ATGAAAGCC
* * **
77537920 AGTGTAAGACCTATTTGGGACATGGCATCGACTTCGATG-TGCTAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATCGACATCGATGATGAAAGCC
*
77537967 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACC-TATCTGGGACATGG
77537993 TGTCAGCATT
Statistics
Matches: 98, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
47 16 0.16
48 13 0.13
49 69 0.70
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTATCTGGGACATGGCATCGACATCGATGATGAAAGCC
Found at i:77540305 original size:13 final size:13
Alignment explanation
Indices: 77540287--77540311 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77540277 TTTAATTGAG
77540287 AAATTAATTTAAC
1 AAATTAATTTAAC
77540300 AAATTAATTTAA
1 AAATTAATTTAA
77540312 GATGTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATTAATTTAAC
Found at i:77542602 original size:16 final size:14
Alignment explanation
Indices: 77542569--77542606 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
77542559 CATTCAATAA
77542569 TTTTT-TATTAAAT
1 TTTTTATATTAAAT
77542582 TTTTTATATATAAATT
1 TTTTTATAT-TAAA-T
77542598 TTTTTATAT
1 TTTTTATAT
77542607 CAAACACATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.23
14 3 0.14
15 4 0.18
16 10 0.45
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTATATTAAAT
Found at i:77542606 original size:14 final size:14
Alignment explanation
Indices: 77542569--77542606 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
77542559 CATTCAATAA
77542569 TTTTTTAT-TAAAT
1 TTTTTTATATAAAT
77542582 TTTTTATATATAAAT
1 TTTTT-TATATAAAT
77542597 TTTTTTATAT
1 TTTTTTATAT
77542607 CAAACACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.22
14 8 0.35
15 10 0.43
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTTATATAAAT
Found at i:77542775 original size:16 final size:16
Alignment explanation
Indices: 77542745--77542774 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77542735 CAGATCAACA
77542745 TTTTTGTTTTGTTTTG
1 TTTTTGTTTTGTTTTG
77542761 TTTTTGTTTT-TTTT
1 TTTTTGTTTTGTTTT
77542775 TTTAAGAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (16 bp):
TTTTTGTTTTGTTTTG
Found at i:77550154 original size:43 final size:43
Alignment explanation
Indices: 77550074--77550155 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
77550064 CATGTATCAC
* *
77550074 ATCCATTATGAACTCGAACCACTCAACGAACTTGGATGCTCGT
1 ATCCATAATGAACTCGAACCACTCAACGAACTCGGATGCTCGT
* **
77550117 ATCCATAATGAACTC-AGACCATTCAACGGGCTCGGATGC
1 ATCCATAATGAACTCGA-ACCACTCAACGAACTCGGATGC
77550156 CACATGTATC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 1 0.03
43 32 0.97
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (43 bp):
ATCCATAATGAACTCGAACCACTCAACGAACTCGGATGCTCGT
Found at i:77552060 original size:327 final size:311
Alignment explanation
Indices: 77551465--77552389 Score: 1043
Period size: 327 Copynumber: 2.9 Consensus size: 311
77551455 TTACAACTAG
* * *
77551465 CACCCTT-ACTATTTTAGTAGATGATGTGAATTATTTTTAACAATACTTATGCCAAATCATTTTG
1 CACCCTTAACTATTTTAGTAGATGATGTGAATT-TTTTTAATAATACTTATTCCAAATCATTATG
** * * *
77551529 TGAATATAATTTTTTTATATAATAGCATTTTAATAAAATTGAATAAAAAATTTAATCAAAATAGC
65 CCAATATAATTTTTTTATATAATAGCATTTT-TTAAAAAT-AATAAAAAATTTAATCAGAATAGC
* * * *
77551594 TAAAGCTGTTAATTATTTGGACTACCTAATGTCATCGTAAAAGTAAAAAACCAAATTATGTCAAA
128 TAAAGATGTTAATTATTTGGACTACCTAATGTCATTGTAAAAGTAGAAAATCAAATTATGTCAAA
* * * *
77551659 TTAAAATATAATGACTAAATATCAAATGTGAGCATAATAGAAAGATCAAAATTACCATTTTATCA
193 TTAAAATATAAAGACTAAATCTCAAATGTAAGCATAATAGAAAGATCAAAACTACCATTTTATCA
77551724 TTATCTTATAATGATTAAAAAAATAGAAAAAGAAAAGAAGTAATGTCATCATTGATCTAAATAAT
258 TTATCTTATAATG------------GAAAAA-AAAA-AAGTAATGTCATCATTGATCTAAATAAT
77551789 TAGA
309 TA-A
* *
77551793 -ACCCTTAACTATTTCTAGTAAATGATGTGAATTTTTTTAATAATGCTTATTCCAAATCATTATG
1 CACCCTTAACTATTT-TAGTAGATGATGTGAATTTTTTTAATAATACTTATTCCAAATCATTATG
* * *
77551857 CCAATATAATTTTTTTGATATAATAGCGTTTTTTAAAAATACTAAAAAATTTAATCAGAACT-GT
65 CCAATATAATTTTTTT-ATATAATAGCATTTTTTAAAAATAATAAAAAATTTAATCAGAA-TAGC
*
77551921 TAAATATGTTAATTATTTGGACTACCTAATGTCATTGTAAAAGTAGAAAATCAAATTATGTCAAA
128 TAAAGATGTTAATTATTTGGACTACCTAATGTCATTGTAAAAGTAGAAAATCAAATTATGTCAAA
* * * *
77551986 TTAAAATATAAAGACTAAATCTCAAATGTCAGCATAATAGAAAGGTCAAAACTACTATTTTATTA
193 TTAAAATATAAAGACTAAATCTCAAATGTAAGCATAATAGAAAGATCAAAACTACCATTTTATCA
** * *
77552051 TTATCTTATAATGGCTAAAAAAAAAGTCATGTCATTATTGATCTAAATAATTAA
258 TTATCTTATAATGGAAAAAAAAAAAGTAATGTCATCATTGATCTAAATAATTAA
* * * * * * *
77552105 CACCCTTAA-TATTTTTAGTTGATTATGTGATTTTTTTTATTAATACTTATTACAAATCATCATA
1 CACCCTTAACTA-TTTTAGTAGATGATGTGAATTTTTTTAATAATACTTATTCCAAATCATTATG
* * *
77552169 CCGAA-ATAATTTTTTTTATAGAATAGCATTTTTTTTTAAAATAGAATAACAAATTTAATCAGAA
65 CC-AATATAA-TTTTTTTATATAATAGCA---TTTTTTAAAA-ATAATAAAAAATTTAATCAGAA
* *
77552233 TAGCTAAAGATGTTAATTATTTGGAGTACCTAATGTGATTGTAAAAGTAGAAAATCAAATTATGT
124 TAGCTAAAGATGTTAATTATTTGGACTACCTAATGTCATTGTAAAAGTAGAAAATCAAATTATGT
* * * * ** * ** *
77552298 GAAATTAAAATATAAA-TCTTAAATCTTAAATGTAAGCATAACAGAGGGATTAAAACTAAAAATT
189 CAAATTAAAATATAAAGAC-TAAATCTCAAATGTAAGCATAATAGAAAGATCAAAACTACCATTT
* * *
77552362 TACCACTATAATTATAATGGAAAAAAAA
253 TATCATTAT-CTTATAATGGAAAAAAAA
77552390 TTAAGCGCAC
Statistics
Matches: 517, Mismatches: 65, Indels: 41
0.83 0.10 0.07
Matches are distributed among these distances:
312 58 0.11
313 48 0.09
314 4 0.01
315 16 0.03
316 134 0.26
317 15 0.03
327 156 0.30
328 55 0.11
329 31 0.06
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (311 bp):
CACCCTTAACTATTTTAGTAGATGATGTGAATTTTTTTAATAATACTTATTCCAAATCATTATGC
CAATATAATTTTTTTATATAATAGCATTTTTTAAAAATAATAAAAAATTTAATCAGAATAGCTAA
AGATGTTAATTATTTGGACTACCTAATGTCATTGTAAAAGTAGAAAATCAAATTATGTCAAATTA
AAATATAAAGACTAAATCTCAAATGTAAGCATAATAGAAAGATCAAAACTACCATTTTATCATTA
TCTTATAATGGAAAAAAAAAAAGTAATGTCATCATTGATCTAAATAATTAA
Found at i:77552211 original size:18 final size:19
Alignment explanation
Indices: 77552177--77552212 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
77552167 TACCGAAATA
*
77552177 ATTTTTTTTATAGAATAGC
1 ATTTTTTTTATAAAATAGC
77552196 ATTTTTTTT-TAAAATAG
1 ATTTTTTTTATAAAATAG
77552213 AATAACAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (19 bp):
ATTTTTTTTATAAAATAGC
Found at i:77552389 original size:316 final size:315
Alignment explanation
Indices: 77551466--77552389 Score: 983
Period size: 316 Copynumber: 2.9 Consensus size: 315
77551456 TACAACTAGC
* * ** ** *
77551466 ACCCTT-ACTATTT-TAGTAGATGATGTGAATTATTTTTAACAATACTTATGCCAAATCATTTTG
1 ACCCTTAACTATTTCTAGTAAATGATGTGAATT-TTTTTAATAATACTTATTACAAATCATCATA
** ** * *
77551529 TGAATATAA-TTTTTTTATATAATAGCATTTTAATAAAATTGAATAAAAAATTTAATCAAAATAG
65 CCAATATAATTTTTTTTATATAATAGCATTTTTTTAAAATAGAATAAAAAATTTAATCAGAATAG
* * * *
77551593 CTAAAGCTGTTAATTATTTGGACTACCTAATGTCATCGTAAAAGTAAAAAACCAAATTATGTCAA
130 CTAAAGATGTTAATTATTTGGACTACCTAATGTCATTGTAAAAGTAGAAAATCAAATTATGTCAA
* * * * *
77551658 ATTAAAATAT-AATGACTAAATATCAAATGTGAGCATAATAGAAAGATCAAAATTACCATTTTAT
195 ATTAAAATATAAAT--CTAAATCTCAAATGTAAGCATAATAGAAGGATCAAAACTACAATTTTA-
* *
77551722 CATTATCTTATAATGATTAAAAAAATAGAAAAAGAAAAGAAGTAATGTCATCATTGATCTAAATA
257 C--TA-C-TAT-A--ATT---ATAAT-GGAAAA-AAAAGAAGTAATGTCATCATTGATCTAAATA
77551787 ATTAGA
310 ATTAGA
* * * *
77551793 ACCCTTAACTATTTCTAGTAAATGATGTGAATTTTTTTAATAATGCTTATTCCAAATCATTATGC
1 ACCCTTAACTATTTCTAGTAAATGATGTGAATTTTTTTAATAATACTTATTACAAATCATCATAC
* * * *
77551858 CAATATAATTTTTTTGATATAATAGC-GTTTTTTAAAA-ATACTAAAAAATTTAATCAGAACT-G
66 CAATATAATTTTTTTTATATAATAGCATTTTTTTAAAATAGAATAAAAAATTTAATCAGAA-TAG
* *
77551920 TTAAATATGTTAATTATTTGGACTACCTAATGTCATTGTAAAAGTAGAAAATCAAATTATGTCAA
130 CTAAAGATGTTAATTATTTGGACTACCTAATGTCATTGTAAAAGTAGAAAATCAAATTATGTCAA
* * * *
77551985 ATTAAAATATAAAGACTAAATCTCAAATGTCAGCATAATAGAAAGG-TCAAAACTACTATTTTAT
195 ATTAAAATATAAA-TCTAAATCTCAAATGTAAGCATAATAG-AAGGATCAAAACTACAATTTTAC
* * * * *
77552049 TATTAT-CTTATAATGGCTAAAAAAA-AAGTCATGTCATTATTGATCTAAATAATTA-A
258 TACTATAATTATAATGG-AAAAAAAAGAAGTAATGTCATCATTGATCTAAATAATTAGA
* ** * * *
77552105 CACCCTTAA-TATTTTTAGTTGATTATGTGATTTTTTTTATTAATACTTATTACAAATCATCATA
1 -ACCCTTAACTATTTCTAGTAAATGATGTGAATTTTTTTAATAATACTTATTACAAATCATCATA
* *
77552169 CCGAA-ATAATTTTTTTTATAGAATAGCATTTTTTTTTAAAATAGAATAACAAATTTAATCAGAA
65 CC-AATATAATTTTTTTTATATAATAGCA--TTTTTTTAAAATAGAATAAAAAATTTAATCAGAA
* *
77552233 TAGCTAAAGATGTTAATTATTTGGAGTACCTAATGTGATTGTAAAAGTAGAAAATCAAATTATGT
127 TAGCTAAAGATGTTAATTATTTGGACTACCTAATGTCATTGTAAAAGTAGAAAATCAAATTATGT
* * * * * * *
77552298 GAAATTAAAATATAAATCTTAAATCTTAAATGTAAGCATAACAGAGGGATTAAAACTAAAAATTT
192 CAAATTAAAATATAAATC-TAAATCTCAAATGTAAGCATAATAGAAGGATCAAAACTACAATTTT
*
77552363 ACCACTATAATTATAATGGAAAAAAAA
256 ACTACTATAATTATAATGGAAAAAAAA
77552390 TTAAGCGCAC
Statistics
Matches: 509, Mismatches: 70, Indels: 47
0.81 0.11 0.08
Matches are distributed among these distances:
312 68 0.13
313 38 0.07
314 5 0.01
315 22 0.04
316 139 0.27
317 9 0.02
318 2 0.00
322 3 0.01
324 2 0.00
327 133 0.26
328 55 0.11
329 33 0.06
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (315 bp):
ACCCTTAACTATTTCTAGTAAATGATGTGAATTTTTTTAATAATACTTATTACAAATCATCATAC
CAATATAATTTTTTTTATATAATAGCATTTTTTTAAAATAGAATAAAAAATTTAATCAGAATAGC
TAAAGATGTTAATTATTTGGACTACCTAATGTCATTGTAAAAGTAGAAAATCAAATTATGTCAAA
TTAAAATATAAATCTAAATCTCAAATGTAAGCATAATAGAAGGATCAAAACTACAATTTTACTAC
TATAATTATAATGGAAAAAAAAGAAGTAATGTCATCATTGATCTAAATAATTAGA
Found at i:77553594 original size:15 final size:15
Alignment explanation
Indices: 77553558--77553596 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
77553548 AGGAAATATA
77553558 CATTTATTAAGTCGT
1 CATTTATTAAGTCGT
*
77553573 CAATTATTAAGTC-T
1 CATTTATTAAGTCGT
77553587 CATTTTATTA
1 CA-TTTATTA
77553597 TTGATAGTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 3 0.14
15 18 0.86
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.49
Consensus pattern (15 bp):
CATTTATTAAGTCGT
Found at i:77557312 original size:13 final size:13
Alignment explanation
Indices: 77557294--77557327 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
77557284 GGTCACACGC
77557294 CCGTGTGGGTAAG
1 CCGTGTGGGTAAG
77557307 CCGTGTGGGTAAG
1 CCGTGTGGGTAAG
*
77557320 TCGTGTGG
1 CCGTGTGG
77557328 CTCACACAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.12, C:0.15, G:0.47, T:0.26
Consensus pattern (13 bp):
CCGTGTGGGTAAG
Found at i:77562077 original size:9 final size:9
Alignment explanation
Indices: 77562063--77562093 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
77562053 AGATGACCAA
77562063 ATTTTGGCT
1 ATTTTGGCT
77562072 ATTTTGGCT
1 ATTTTGGCT
77562081 ATTTTGGCT
1 ATTTTGGCT
77562090 -TTTT
1 ATTTT
77562094 AATTCATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.18
9 18 0.82
ACGTcount: A:0.10, C:0.10, G:0.19, T:0.61
Consensus pattern (9 bp):
ATTTTGGCT
Found at i:77562966 original size:13 final size:13
Alignment explanation
Indices: 77562950--77562983 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
77562940 AAATCAAAAT
*
77562950 TTTCAAAAGCACA
1 TTTCAAAAGAACA
*
77562963 TTTCAAAAGAACT
1 TTTCAAAAGAACA
77562976 TTTCAAAA
1 TTTCAAAA
77562984 ACATTTGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.29
Consensus pattern (13 bp):
TTTCAAAAGAACA
Found at i:77566327 original size:32 final size:31
Alignment explanation
Indices: 77566291--77566351 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
77566281 ACATTTGTAT
*
77566291 TATTTATGTA-TAATTAGTGAAAAGATATTTTA
1 TATTTAT-TATTAATTAAT-AAAAGATATTTTA
*
77566323 TATTTATTATTAATTAATAAAATATATTT
1 TATTTATTATTAATTAATAAAAGATATTT
77566352 ATTAGATGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 12 0.46
32 14 0.54
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.51
Consensus pattern (31 bp):
TATTTATTATTAATTAATAAAAGATATTTTA
Found at i:77567203 original size:14 final size:14
Alignment explanation
Indices: 77567184--77567223 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
77567174 ATTACTATAA
77567184 TTTAAGTATTTATT
1 TTTAAGTATTTATT
*
77567198 TTTAAGTA-TTAGT
1 TTTAAGTATTTATT
77567211 TTTAA--ATTTATT
1 TTTAAGTATTTATT
77567223 T
1 T
77567224 ATTTTATAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 1 0.04
12 5 0.22
13 9 0.39
14 8 0.35
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (14 bp):
TTTAAGTATTTATT
Found at i:77582677 original size:27 final size:27
Alignment explanation
Indices: 77582629--77582787 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
77582619 GCGAGGCTGC
* *
77582629 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
77582656 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
77582682 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
77582709 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
77582736 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
77582763 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
77582788 GACGCTTCCT
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 102 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:77582788 original size:54 final size:54
Alignment explanation
Indices: 77582647--77582790 Score: 254
Period size: 54 Copynumber: 2.7 Consensus size: 54
77582637 GTGACGAAGT
* *
77582647 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
77582701 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
77582755 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
77582791 GCTTCCTCCA
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
53 5 0.06
54 82 0.94
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:77584401 original size:26 final size:26
Alignment explanation
Indices: 77584365--77584472 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
77584355 TGAAATGCCC
* *
77584365 ATCATGGAACATTTACGTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
**
77584391 ATCATAAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
77584417 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
77584443 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
77584469 ATCA
1 ATCA
77584473 ATTTGTATCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:77618349 original size:34 final size:34
Alignment explanation
Indices: 77618306--77618376 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
77618296 GTGTGTTCAA
*
77618306 TCTCACTATCAAAAAGTAATGATCTTGACGGGTT
1 TCTCACTATCAAAAAGTAATGATCCTGACGGGTT
77618340 TCTCACTATCAAAAAGTAATGATCCTGACGGGTT
1 TCTCACTATCAAAAAGTAATGATCCTGACGGGTT
77618374 TCT
1 TCT
77618377 TCTAGTTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (34 bp):
TCTCACTATCAAAAAGTAATGATCCTGACGGGTT
Found at i:77625300 original size:20 final size:20
Alignment explanation
Indices: 77625275--77625312 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
77625265 ACATGTCGAC
*
77625275 GCCATATCCCAACTAAGGAT
1 GCCATATCCCAAATAAGGAT
77625295 GCCATATCCCAAATAAGG
1 GCCATATCCCAAATAAGG
77625313 TCTTATACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.29, G:0.16, T:0.18
Consensus pattern (20 bp):
GCCATATCCCAAATAAGGAT
Found at i:77625391 original size:48 final size:47
Alignment explanation
Indices: 77625339--77625560 Score: 264
Period size: 48 Copynumber: 4.6 Consensus size: 47
77625329 ATATTGGTGT
* * * * *
77625339 CGATGACATGCCCCCGACATGGTCTTGCACTAGCACACATATCATCGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCACACATATCAACGC
* *
77625387 CGATGCCATGTCCCAGACATGGTCTTACACTGTGACACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTG-CACACATATCAACGC
*
77625435 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCACACATATCAACGC
* * * * * *
77625483 CGATGCCATGTCCCAGACGTGGTCTTACACTGGCTCTCATCTCGGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCACACATATC-AACGC
*
77625532 TGATGCCATGTCCCAGACATGGTCTTACA
1 CGATGCCATGTCCCAGACATGGTCTTACA
77625561 TGGGATCTCA
Statistics
Matches: 152, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
47 1 0.01
48 121 0.80
49 30 0.20
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCACACATATCAACGC
Done.