Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 234 of 284
Found at i:78097542 original size:96 final size:96
Alignment explanation
Indices: 78097229--78097544 Score: 340
Period size: 96 Copynumber: 3.3 Consensus size: 96
78097219 GTGAATTGCT
* ** * * *
78097229 GATGCCATGTTCCAAACATGGTCTTACACT-G-TCTCAC-AGGT--C-GAGGACGATGTCTCAAA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAACATCACTGATG-CCATGTCCCAAA
* *
78097288 CATGGTCTTACACTAGCTCTCATCTCAATGCC
65 CATGGTCTTACACTGGCTCTCATATCAATGCC
* * * * ** ** * **
78097320 AATGCCATGTCCCAAACATGGTCTTACACTAGTTCTCATAATGTGGCTGATGCCGTGTCCCAGGC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAACATCACTGATGCCATGTCCCAAAC
* * *
78097385 ATGGTTTTACACTGGCGCACATATCAATGCC
66 ATGGTCTTACACTGGCTCTCATATCAATGCC
* * *
78097416 GATACCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATCACTGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAACATCACTGATGCCATGTCCCAAAC
78097481 ATGGTCTTACACTGGCTCTCATATC-ATGGCC
66 ATGGTCTTACACTGGCTCTCATATCAAT-GCC
78097512 GATGCCATGTCCCAAACATGGTCTTACACTGGC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGC
78097545 ACACATATCA
Statistics
Matches: 184, Mismatches: 34, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
91 28 0.15
92 1 0.01
93 5 0.03
94 3 0.02
95 2 0.01
96 142 0.77
97 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAACATCACTGATGCCATGTCCCAAAC
ATGGTCTTACACTGGCTCTCATATCAATGCC
Found at i:78103459 original size:16 final size:16
Alignment explanation
Indices: 78103438--78103469 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
78103428 TATGTAATGC
78103438 CCCAAAAATCTCGAAA
1 CCCAAAAATCTCGAAA
78103454 CCCAAAAATCTCGAAA
1 CCCAAAAATCTCGAAA
78103470 TCTTGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (16 bp):
CCCAAAAATCTCGAAA
Found at i:78105142 original size:29 final size:30
Alignment explanation
Indices: 78105070--78105143 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
78105060 TTTGGAACTA
** *
78105070 ATGGGCCATATGAAGGTGAATTGGGCCTAG
1 ATGGGCCATATGAATATGAACTGGGCCTAG
*
78105100 -TGGGCCATAAGAATATGAACTGGGCC-AG
1 ATGGGCCATATGAATATGAACTGGGCCTAG
*
78105128 ATGGGCCATTTGAATA
1 ATGGGCCATATGAATA
78105144 AGTAGTGGGC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
28 2 0.05
29 35 0.95
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.23
Consensus pattern (30 bp):
ATGGGCCATATGAATATGAACTGGGCCTAG
Found at i:78106790 original size:36 final size:36
Alignment explanation
Indices: 78106746--78106818 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
78106736 ATGTTGGAGT
78106746 AGAAGAGGCTCCGGCCTCACCTGTGGCTGGGAATGG
1 AGAAGAGGCTCCGGCCTCACCTGTGGCTGGGAATGG
78106782 AGAAGAGGCTCCGGCCTCACCTGTGGCTGGGAATGG
1 AGAAGAGGCTCCGGCCTCACCTGTGGCTGGGAATGG
78106818 A
1 A
78106819 CCTTATGATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.21, C:0.25, G:0.38, T:0.16
Consensus pattern (36 bp):
AGAAGAGGCTCCGGCCTCACCTGTGGCTGGGAATGG
Found at i:78108783 original size:19 final size:18
Alignment explanation
Indices: 78108761--78108797 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
78108751 AGAATTAGCC
78108761 AAATGGGCTGGAATGGGCT
1 AAATGGGCTGG-ATGGGCT
*
78108780 AAATGGGCTTGATGGGCT
1 AAATGGGCTGGATGGGCT
78108798 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.24, C:0.11, G:0.41, T:0.24
Consensus pattern (18 bp):
AAATGGGCTGGATGGGCT
Found at i:78108921 original size:29 final size:27
Alignment explanation
Indices: 78108888--78108984 Score: 88
Period size: 29 Copynumber: 3.4 Consensus size: 27
78108878 TTTGGCTTAA
78108888 TGGGCCATATGAAGGTGAATTGGGCCTAG
1 TGGGCCATATGAA--TGAATTGGGCCTAG
* *
78108917 TGGGCCATAATAATATGAACTGGGCC-AG
1 TGGGCCAT-ATGA-ATGAATTGGGCCTAG
* *
78108945 ATGGGCCATTTGAATAAGATTGGGCCTAG
1 -TGGGCCATATGAATGA-ATTGGGCCTAG
*
78108974 TGGGCTATATG
1 TGGGCCATATG
78108985 CATGTATGTA
Statistics
Matches: 55, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
27 3 0.05
28 20 0.36
29 28 0.51
30 3 0.05
31 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.26
Consensus pattern (27 bp):
TGGGCCATATGAATGAATTGGGCCTAG
Found at i:78115325 original size:48 final size:48
Alignment explanation
Indices: 78115041--78115327 Score: 319
Period size: 48 Copynumber: 6.0 Consensus size: 48
78115031 AGGGCGAATT
* * * * *
78115041 GCCGATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATGTTGA-G
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCATG
* * * * *
78115089 GTCGATGCCATGTCCCAAGCACGGTCTTACACTAGCTCTCATCTCAAT-
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC-ATG
* * *
78115137 GCCGATGGCATGTCCCAGACATGATCTTACACTGGCTCTCATAAT-ATG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCATG
* * * * * *
78115185 GCCGATACCATGTCCTAGACATGGTCTTACACTGGCTCTCACAACATC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATG
* *
78115233 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATG
* *
78115281 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAT
78115328 CCAAATGTCA
Statistics
Matches: 198, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
47 4 0.02
48 193 0.97
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATG
Found at i:78117803 original size:42 final size:42
Alignment explanation
Indices: 78117724--78117807 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
78117714 GGGATTTTCT
*
78117724 TTCCCTATCTCATGACAGCACTTTGCAAAAGCATAGAGGTTC
1 TTCCCTATCTCATGACAGCACTTTGCAAAAACATAGAGGTTC
** * * **
78117766 TTCCCTATCTTGTGATAGCATTTTGCAAAAATGTAGAGGTTC
1 TTCCCTATCTCATGACAGCACTTTGCAAAAACATAGAGGTTC
78117808 CAATGGATGA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (42 bp):
TTCCCTATCTCATGACAGCACTTTGCAAAAACATAGAGGTTC
Found at i:78126459 original size:26 final size:26
Alignment explanation
Indices: 78126397--78126465 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 26
78126387 AACATATCTG
*
78126397 CCAGAAACAGTAAATGTGGCAAGCCA
1 CCAGTAACAGTAAATGTGGCAAGCCA
** * *
78126423 CCTTTATCAGTAATTGTGGCATAG-CA
1 CCAGTAACAGTAAATGTGGCA-AGCCA
*
78126449 CCAGTAACAGTGAATGT
1 CCAGTAACAGTAAATGT
78126466 AACATAGTTA
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
26 30 0.94
27 2 0.06
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CCAGTAACAGTAAATGTGGCAAGCCA
Found at i:78126652 original size:27 final size:27
Alignment explanation
Indices: 78126622--78126763 Score: 151
Period size: 27 Copynumber: 5.3 Consensus size: 27
78126612 GGGCATAATC
* * *
78126622 GTCATTTTACCAAATAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACA
*
78126649 GTCATTTTACCATACAGGGGCATTACA
1 GTCATTTTACCATACAGGGGTATTACA
* *
78126676 GTCATTTTACTC-TACAGGAGCATTACA
1 GTCATTTTAC-CATACAGGGGTATTACA
* * * *
78126703 GTTATTTTACCCTACAGGGATATTACG
1 GTCATTTTACCATACAGGGGTATTACA
* *
78126730 GTCATTTTACCCTATAGGGGTATTACA
1 GTCATTTTACCATACAGGGGTATTACA
*
78126757 GTAATTT
1 GTCATTT
78126764 ATAACCCGAG
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 96 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACA
Found at i:78126755 original size:54 final size:54
Alignment explanation
Indices: 78126622--78126763 Score: 167
Period size: 54 Copynumber: 2.6 Consensus size: 54
78126612 GGGCATAATC
** * * *
78126622 GTCATTTTACCAAATAGGGGTATTACGGTCATTTTACCATACAGGGGCATTACA
1 GTCATTTTACCCTATAGGGGTATTACAGTAATTTTACCATACAGGGACATTACA
* * * * * * * *
78126676 GTCATTTTACTCTACAGGAGCATTACAGTTATTTTACCCTACAGGGATATTACG
1 GTCATTTTACCCTATAGGGGTATTACAGTAATTTTACCATACAGGGACATTACA
78126730 GTCATTTTACCCTATAGGGGTATTACAGTAATTT
1 GTCATTTTACCCTATAGGGGTATTACAGTAATTT
78126764 ATAACCCGAG
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (54 bp):
GTCATTTTACCCTATAGGGGTATTACAGTAATTTTACCATACAGGGACATTACA
Found at i:78126806 original size:27 final size:27
Alignment explanation
Indices: 78126776--78126877 Score: 150
Period size: 27 Copynumber: 3.8 Consensus size: 27
78126766 AACCCGAGGA
*
78126776 TATTTTGATAATTTTACAAATTAGGGG
1 TATTTCGATAATTTTACAAATTAGGGG
78126803 TATTTCGATAATTTTACAAATTAGGGG
1 TATTTCGATAATTTTACAAATTAGGGG
* * **
78126830 TGTTTCGGTAATTTTACAAATCGGGGG
1 TATTTCGATAATTTTACAAATTAGGGG
*
78126857 TATTTCAATAATTTTACAAAT
1 TATTTCGATAATTTTACAAAT
78126878 CGGGGTCTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
TATTTCGATAATTTTACAAATTAGGGG
Found at i:78129564 original size:43 final size:42
Alignment explanation
Indices: 78129516--78129651 Score: 123
Period size: 42 Copynumber: 3.2 Consensus size: 42
78129506 TCGTAGACGT
* *
78129516 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACA-GTAATTCAATATCGATGCCTATGTCCCAGACAC
** * * *
78129559 GGTCTTACACAAAATCAGATAT-GATGCCGATGTCCCAGACAT
1 GGTCTTACAGTAATTCA-ATATCGATGCCTATGTCCCAGACAC
* * *
78129601 GGTCTTACACGTAAATCTCAA-ATCGAAGCCTAGGTCCTAGACAC
1 GGTCTTACA-GT-AAT-TCAATATCGATGCCTATGTCCCAGACAC
78129645 GGTCTTA
1 GGTCTTA
78129652 TACGATATTT
Statistics
Matches: 74, Mismatches: 14, Indels: 9
0.76 0.14 0.09
Matches are distributed among these distances:
42 31 0.42
43 15 0.20
44 25 0.34
45 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
GGTCTTACAGTAATTCAATATCGATGCCTATGTCCCAGACAC
Found at i:78130073 original size:17 final size:17
Alignment explanation
Indices: 78130046--78130091 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
78130036 CTATTTTTCA
78130046 CAAAA-TCACCAATATAG
1 CAAAATTCACCAATAT-G
78130063 -AAAATTCACCAATATG
1 CAAAATTCACCAATATG
78130079 CAAAATTCACCAA
1 CAAAATTCACCAA
78130092 GAATATAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 5 0.19
17 22 0.81
ACGTcount: A:0.52, C:0.24, G:0.04, T:0.20
Consensus pattern (17 bp):
CAAAATTCACCAATATG
Found at i:78137834 original size:46 final size:47
Alignment explanation
Indices: 78137728--78137849 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
78137718 TGTCTTCGAC
** * *
78137728 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
78137778 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
78137824 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
78137850 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:78140869 original size:25 final size:25
Alignment explanation
Indices: 78140835--78140890 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
78140825 AGCTAGCTCT
78140835 AAATGGAAGGAGCATTAGTCAAGCC
1 AAATGGAAGGAGCATTAGTCAAGCC
78140860 AAATGGAAGGAGCATTAGTCAAGCC
1 AAATGGAAGGAGCATTAGTCAAGCC
78140885 AAATGG
1 AAATGG
78140891 CATCACAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.41, C:0.14, G:0.29, T:0.16
Consensus pattern (25 bp):
AAATGGAAGGAGCATTAGTCAAGCC
Found at i:78144644 original size:46 final size:47
Alignment explanation
Indices: 78144538--78144659 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 47
78144528 TGTCTTCAAC
** * *
78144538 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
** *
78144588 ATGGGTTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
78144634 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
78144660 CTGTCCTGTC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 33 0.53
50 29 0.47
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:78146460 original size:48 final size:48
Alignment explanation
Indices: 78146401--78146498 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
78146391 ACCAATTAAA
*
78146401 ATATAATACCCCTAACTCGTAACCGGCATAGAATTAAGGTTATGAGGC
1 ATATAACACCCCTAACTCGTAACCGGCATAGAATTAAGGTTATGAGGC
78146449 ATATAACACCCCTAACTCGTAACCGGCATAGAATTAAGGTTATGAGGC
1 ATATAACACCCCTAACTCGTAACCGGCATAGAATTAAGGTTATGAGGC
78146497 AT
1 AT
78146499 TACCAGATAG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (48 bp):
ATATAACACCCCTAACTCGTAACCGGCATAGAATTAAGGTTATGAGGC
Found at i:78147755 original size:42 final size:43
Alignment explanation
Indices: 78147708--78147812 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 43
78147698 GATGCCTCTA
* * *
78147708 TCCCAGACAGGGTCTTACACG-AAA-TCAAATACGATG-CTGATG
1 TCCCAGACACGGTCTTACACGTAAACTCAAAT-CAAAGCCTG-TG
* *
78147750 TCCCAGACATGGTCTTACATGTAAATCTCAAATCAAAGCCTGTG
1 TCCCAGACACGGTCTTACACGTAAA-CTCAAATCAAAGCCTGTG
78147794 TCCCAGACACGGTCTTACA
1 TCCCAGACACGGTCTTACA
78147813 TGATATTTCA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
42 19 0.35
43 3 0.06
44 23 0.43
45 9 0.17
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
TCCCAGACACGGTCTTACACGTAAACTCAAATCAAAGCCTGTG
Found at i:78157437 original size:46 final size:44
Alignment explanation
Indices: 78157355--78157466 Score: 125
Period size: 46 Copynumber: 2.5 Consensus size: 44
78157345 GATGAGTGTT
* * *
78157355 AGTGTAAGACATGTCTAGGACATGCGTCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTAGGACATCCATCAGCCTCGAGA--TAAGCC
** * *
78157401 AGTGTAAGACATGTCTAGGACATCCATCAGTTTCGAGATATGTC
1 AGTGTAAGACATGTCTAGGACATCCATCAGCCTCGAGATAAGCC
*
78157445 AGTGTAAGACCATGTCTGGGAC
1 AGTGTAAGA-CATGTCTAGGAC
78157467 TTGGCATCGG
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 13 0.23
45 11 0.19
46 33 0.58
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTAGGACATCCATCAGCCTCGAGATAAGCC
Found at i:78174041 original size:21 final size:21
Alignment explanation
Indices: 78174015--78174057 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
78174005 GAAAATTTCG
78174015 TTAGTAAAAGTGATGTGACAT
1 TTAGTAAAAGTGATGTGACAT
78174036 TTAGTAAAAGTGATGTGACAT
1 TTAGTAAAAGTGATGTGACAT
78174057 T
1 T
78174058 GACACGATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.35
Consensus pattern (21 bp):
TTAGTAAAAGTGATGTGACAT
Found at i:78181039 original size:47 final size:47
Alignment explanation
Indices: 78180981--78181102 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
78180971 GCATTGCCAC
78180981 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* * *
78181028 TAAGACAAGGATACCATTTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
*
78181075 TAAGATAAGGATAACATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
78181103 CCAAGGCATG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:78181139 original size:54 final size:54
Alignment explanation
Indices: 78181075--78181288 Score: 182
Period size: 54 Copynumber: 4.0 Consensus size: 54
78181065 TGGCATTTGG
* *
78181075 TAAGATAAGGATAACATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGATAAGGATAACATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTA
* * * * *
78181129 TAAGGTAAGGA-AATTATGTAAGACCATGTCAAGACGTGACATTGATGAGTTACTA
1 TAAGATAAGGATAA-CATGTAAGACCATGCCAAGACATGACATTGATAAGTT-CTA
** * * *
78181184 TAAGATAAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATTGGTTAGTTC-A
1 TAAGAT-AAGGATAACATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTA
** * * * * * * * *
78181237 TAAGGGAAAGATACCACGTAAGACCGTGTCAAGACATGGCAATGGTAAGTTC
1 TAAGATAAGGATAACATGTAAGACCATGCCAAGACATGACATTGATAAGTTC
78181289 AAAAAGGAAA
Statistics
Matches: 128, Mismatches: 27, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
52 3 0.02
53 40 0.31
54 42 0.33
55 39 0.30
56 4 0.03
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (54 bp):
TAAGATAAGGATAACATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTA
Found at i:78187588 original size:24 final size:25
Alignment explanation
Indices: 78187557--78187618 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 25
78187547 TCAGCTTGTA
78187557 AGAGCTTACTGTTCT-CAACTCG-T
1 AGAGCTTACTGTTCTCCAACTCGAT
*
78187580 CAGAGCTTACTGTT-TCCAGCTCGAT
1 -AGAGCTTACTGTTCTCCAACTCGAT
78187605 AGAGCTTACTGTTC
1 AGAGCTTACTGTTC
78187619 ATCAGCTCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 1 0.03
24 32 0.94
25 1 0.03
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (25 bp):
AGAGCTTACTGTTCTCCAACTCGAT
Found at i:78199442 original size:39 final size:40
Alignment explanation
Indices: 78199397--78199621 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
78199387 GCTCCTCGTT
* * * *
78199397 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
78199437 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
78199476 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
78199516 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
78199556 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
78199597 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
78199622 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:78199630 original size:41 final size:41
Alignment explanation
Indices: 78199553--78199630 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
78199543 TTTGTATCTC
* * *
78199553 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
78199594 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
78199631 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:78210253 original size:15 final size:15
Alignment explanation
Indices: 78210233--78210270 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
78210223 ATTAATTATT
* *
78210233 TTTATTTTATTTTAA
1 TTTATTTTAGTTCAA
78210248 TTTATTTTAGTTCAA
1 TTTATTTTAGTTCAA
78210263 TTTATTTT
1 TTTATTTT
78210271 TTTATTTTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTATTTTAGTTCAA
Found at i:78211711 original size:17 final size:17
Alignment explanation
Indices: 78211689--78211735 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
78211679 TTAATTATTT
78211689 ATTAAAATTTCAAATAA
1 ATTAAAATTTCAAATAA
* * *
78211706 ATTAAAAATTCAACTAT
1 ATTAAAATTTCAAATAA
78211723 A-TAAAATTT-AAAT
1 ATTAAAATTTCAAAT
78211736 TTAATGCCTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
15 3 0.12
16 7 0.28
17 15 0.60
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36
Consensus pattern (17 bp):
ATTAAAATTTCAAATAA
Found at i:78213082 original size:20 final size:20
Alignment explanation
Indices: 78213045--78213083 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
78213035 GTTTATTTGA
*
78213045 ATCTGTTATCTAATCTGTAC
1 ATCTGTTATCTAAACTGTAC
78213065 ATCTGTT-TCTATAACTGTA
1 ATCTGTTATCTA-AACTGTA
78213084 TTTGAGAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (20 bp):
ATCTGTTATCTAAACTGTAC
Found at i:78213971 original size:16 final size:15
Alignment explanation
Indices: 78213939--78213972 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
78213929 AAAGAATAAA
*
78213939 ATTTTATATTGAATT
1 ATTTTATATTAAATT
78213954 ATTTTATATTTAAATT
1 ATTTTATA-TTAAATT
78213970 ATT
1 ATT
78213973 ATGTTTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
ATTTTATATTAAATT
Found at i:78214082 original size:17 final size:18
Alignment explanation
Indices: 78214062--78214097 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
78214052 TATATAAAAA
78214062 TTTATAA-ATAATAAATT
1 TTTATAATATAATAAATT
*
78214079 TTTATAATATAATATATT
1 TTTATAATATAATAAATT
78214097 T
1 T
78214098 CATTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTATAATATAATAAATT
Found at i:78215312 original size:20 final size:21
Alignment explanation
Indices: 78215287--78215332 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
78215277 CATAATGATT
78215287 TTTTTTATATTT-AATTTTCA
1 TTTTTTATATTTAAATTTTCA
* *
78215307 TTTTTTATTTTTAAATTTTTA
1 TTTTTTATATTTAAATTTTCA
78215328 TTTTT
1 TTTTT
78215333 ATTAAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTTTATATTTAAATTTTCA
Found at i:78215849 original size:20 final size:21
Alignment explanation
Indices: 78215812--78215856 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
78215802 AGTACATTGA
*
78215812 ATTTTATTTTAAATATTTAAT
1 ATTTAATTTTAAATATTTAAT
78215833 ATTTAATTTTATAAT-TTATAAT
1 ATTTAATTTTA-AATATT-TAAT
78215855 AT
1 AT
78215857 AACTTCCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTAATTTTAAATATTTAAT
Found at i:78217518 original size:22 final size:22
Alignment explanation
Indices: 78217490--78217542 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
78217480 CCGTATGACT
78217490 GAGGCACACGCCCATATGAAGA
1 GAGGCACACGCCCATATGAAGA
* * *
78217512 GAGGCACACGGCCGTGTGAAGA
1 GAGGCACACGCCCATATGAAGA
78217534 GAGGCACAC
1 GAGGCACAC
78217543 AGCCGTGTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.32, C:0.26, G:0.34, T:0.08
Consensus pattern (22 bp):
GAGGCACACGCCCATATGAAGA
Found at i:78217547 original size:22 final size:22
Alignment explanation
Indices: 78217506--78217552 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
78217496 CACGCCCATA
*
78217506 TGAAGAGAGGCACACGGCCGTG
1 TGAAGAGAGGCACACAGCCGTG
78217528 TGAAGAGAGGCACACAGCCGTG
1 TGAAGAGAGGCACACAGCCGTG
78217550 TGA
1 TGA
78217553 CTAAGGCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.38, T:0.11
Consensus pattern (22 bp):
TGAAGAGAGGCACACAGCCGTG
Found at i:78218241 original size:18 final size:18
Alignment explanation
Indices: 78218206--78218256 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
78218196 CCCAAGAGAA
* **
78218206 AGAAAGAAAAAATCAAAG
1 AGAAAGCAAAAAGAAAAG
78218224 AGAAAGCAAAAAGAAAAG
1 AGAAAGCAAAAAGAAAAG
*
78218242 A-AACAACAAAAAGAA
1 AGAA-AGCAAAAAGAA
78218257 CGTCCAGGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 26 0.93
ACGTcount: A:0.75, C:0.08, G:0.16, T:0.02
Consensus pattern (18 bp):
AGAAAGCAAAAAGAAAAG
Found at i:78221298 original size:21 final size:21
Alignment explanation
Indices: 78221272--78221313 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
78221262 ATTAATATAA
78221272 TAATAC-CTAATTATATTATTT
1 TAATACTCTAATTA-ATTATTT
*
78221293 TAATACTTTAATTAATTATTT
1 TAATACTCTAATTAATTATTT
78221314 ATGACCCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
TAATACTCTAATTAATTATTT
Found at i:78221484 original size:30 final size:32
Alignment explanation
Indices: 78221449--78221511 Score: 94
Period size: 30 Copynumber: 2.0 Consensus size: 32
78221439 AAGTCATTTC
78221449 ATTATAGTATCGTGA-T-CTCTCCCTAATTAT
1 ATTATAGTATCGTGACTGCTCTCCCTAATTAT
78221479 ATTATAGTATCGTGACTGAGCTCTCCCTAATTA
1 ATTATAGTATCGTGACT--GCTCTCCCTAATTA
78221512 CATACCATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 15 0.52
31 1 0.03
34 13 0.45
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.40
Consensus pattern (32 bp):
ATTATAGTATCGTGACTGCTCTCCCTAATTAT
Found at i:78234305 original size:171 final size:173
Alignment explanation
Indices: 78234104--78234451 Score: 533
Period size: 174 Copynumber: 2.0 Consensus size: 173
78234094 ACATTCTCAC
* *
78234104 ATGTATCATTCCATCACTTATAATCATTTCGTAACGTTTCAAATTCATATACTA-TT-TTTTTCC
1 ATGTATCATTCCATCACCTATAATCATTTCGTAACATTTCAAATTCATATACTATTTCTTTTTCC
*
78234167 TCCT-TCTCCTCCCCATTCCTCACCCTTTATGTGTAAATATATTATAA-TTTTAGCTTTTAGTAC
66 TCCTCT-TCCTCCCCATTCATCACCCTTTATGTGTAAATATATTATAACTTTTAGCTTTTAGTAC
* *
78234230 GTCATGCTTATATGTAACATTAAATATAATTCCATTACTTACTT
130 GGCATGCTTATATGTAACAGTAAATATAATTCCATTACTTACTT
** *
78234274 ATGTATTCATTCCATCACCTATAATCATTTCGTAACATTTCAAATTGTTCTACTATTTCTTTTTC
1 ATGTA-TCATTCCATCACCTATAATCATTTCGTAACATTTCAAATTCATATACTATTTCTTTTTC
* * * *
78234339 CTCCTCTTCCTCTCCATTCATCATCCTTTATGTGTATATATATTATAACTTTTAGCTTTTAGTAT
65 CTCCTCTTCCTCCCCATTCATCACCCTTTATGTGTAAATATATTATAACTTTTAGCTTTTAGTAC
*
78234404 GGCATGCTTATATGTAACAGTAACTATAATTCCATTACTTACTT
130 GGCATGCTTATATGTAACAGTAAATATAATTCCATTACTTACTT
78234448 ATGT
1 ATGT
78234452 GCTCATATTA
Statistics
Matches: 160, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
170 5 0.03
171 44 0.28
172 2 0.01
173 48 0.30
174 61 0.38
ACGTcount: A:0.27, C:0.21, G:0.07, T:0.45
Consensus pattern (173 bp):
ATGTATCATTCCATCACCTATAATCATTTCGTAACATTTCAAATTCATATACTATTTCTTTTTCC
TCCTCTTCCTCCCCATTCATCACCCTTTATGTGTAAATATATTATAACTTTTAGCTTTTAGTACG
GCATGCTTATATGTAACAGTAAATATAATTCCATTACTTACTT
Found at i:78247545 original size:18 final size:18
Alignment explanation
Indices: 78247522--78247804 Score: 124
Period size: 18 Copynumber: 15.3 Consensus size: 18
78247512 GAATAATTAT
78247522 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
78247540 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* * * **
78247558 TTATTCAATGATAACCAG
1 TTATTCAGTAACAGTCAG
*
78247576 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A--G-TCAG
* *
78247602 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* *
78247620 TTATTCAGTAA-AATAAG
1 TTATTCAGTAACAGTCAG
* * *
78247637 ATATTCAGTAACAATTAAG
1 TTATTCAGTAAC-AGTCAG
* *
78247656 TTATCCAGTAACAGTTA-
1 TTATTCAGTAACAGTCAG
* *
78247673 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAG
* *
78247692 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAG
* * *
78247710 TTATTCAGTAATATTTAG
1 TTATTCAGTAACAGTCAG
78247728 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAGTC-AG
* * *
78247746 ATATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* * * *
78247764 TTATCCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* *
78247782 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAGTCAG
78247800 TTATT
1 TTATT
78247805 TTATACCTTT
Statistics
Matches: 197, Mismatches: 52, Indels: 32
0.70 0.19 0.11
Matches are distributed among these distances:
17 16 0.08
18 146 0.74
19 19 0.10
21 2 0.01
22 1 0.01
23 2 0.01
26 11 0.06
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:78247564 original size:36 final size:36
Alignment explanation
Indices: 78247522--78247804 Score: 178
Period size: 36 Copynumber: 7.6 Consensus size: 36
78247512 GAATAATTAT
* *
78247522 TTATTCAGTAACAGTCAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * * * *
78247558 TTATTCAATGATAACCAGTTATTCAGTATCGATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* *
78247594 TTGATCGGTTATCCAGTAACAGTCAATTATTCAGTAA-AAT-AA
1 TT-A-----T-T-CAGTAACAATCAGTTATTCAGTAACAATCAA
* * * * *
78247636 GATATTCAGTAACAATTAAGTTATCCAGTAACAGT-TA
1 -TTATTCAGTAACAA-TCAGTTATTCAGTAACAATCAA
* **
78247673 TTCATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * *
78247710 TTATTCAGTAATATTTAGTTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATC-AA
* * * * *
78247747 -TATCCAGTAACAGTCAATTATCCGGTAACAATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
*
78247782 TTATTCAGTAATAATCAGTTATT
1 TTATTCAGTAACAATCAGTTATT
78247805 TTATACCTTT
Statistics
Matches: 181, Mismatches: 51, Indels: 30
0.69 0.19 0.11
Matches are distributed among these distances:
35 10 0.06
36 125 0.69
37 21 0.12
42 4 0.02
43 4 0.02
44 17 0.09
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
Found at i:78247643 original size:17 final size:19
Alignment explanation
Indices: 78247621--78247668 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
78247611 AACAGTCAAT
78247621 TATTCAGTAA-AA-TAAGA
1 TATTCAGTAACAATTAAGA
*
78247638 TATTCAGTAACAATTAAGT
1 TATTCAGTAACAATTAAGA
*
78247657 TATCCAGTAACA
1 TATTCAGTAACA
78247669 GTTATTCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 10 0.37
18 2 0.07
19 15 0.56
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.31
Consensus pattern (19 bp):
TATTCAGTAACAATTAAGA
Found at i:78247660 original size:54 final size:53
Alignment explanation
Indices: 78247602--78247792 Score: 161
Period size: 54 Copynumber: 3.5 Consensus size: 53
78247592 AATTGATCGG
*
78247602 TTATCCAGTAACAGTCAATTATTCAGTAAAATAAGATATTCAGTAACAATTAA
1 TTATCCAGTAACAGTCAATTATTCAGTAAAATAAGATATTCAGTAACAATCAA
* * * * **
78247655 GTTATCCAGTAACAGT-TATTCATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 -TTATCCAGTAACAGTCAATT-ATTCAGT-AAAATAAGATATTCAGTAACAATCAA
* * * * * * * * *
78247710 TTATTCAGTAATATTTAGTTATTCAGTAACAGTCTA-ATATCCAGTAACAGTCAA
1 TTATCCAGTAACAGTCAATTATTCAGTAA-AAT-AAGATATTCAGTAACAATCAA
* *
78247764 TTATCCGGTAACAATCAATTATTCAGTAA
1 TTATCCAGTAACAGTCAATTATTCAGTAA
78247793 TAATCAGTTA
Statistics
Matches: 106, Mismatches: 26, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
53 4 0.04
54 79 0.75
55 23 0.22
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.35
Consensus pattern (53 bp):
TTATCCAGTAACAGTCAATTATTCAGTAAAATAAGATATTCAGTAACAATCAA
Found at i:78247710 original size:22 final size:22
Alignment explanation
Indices: 78247667--78247710 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
78247657 TATCCAGTAA
* *
78247667 CAGTTATTCATTCAGTGACAAT
1 CAGTTATTCAGTCAATGACAAT
78247689 CAGTTATTCAGT-AATGATCAAT
1 CAGTTATTCAGTCAATGA-CAAT
78247711 TATTCAGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (22 bp):
CAGTTATTCAGTCAATGACAAT
Found at i:78247804 original size:72 final size:70
Alignment explanation
Indices: 78247603--78247804 Score: 217
Period size: 72 Copynumber: 2.8 Consensus size: 70
78247593 ATTGATCGGT
* * *
78247603 TATCCAGTAACAGTCAATTATTCAGTAAAAT-AAGATATTCAGTAACAATTAAGTTATCCAGTAA
1 TATCCAGTAACAGTCAATTATTCAGTAAAATCAA-TTATTCAGTAATAA-TAAGTTATTCAGTAA
*
78247667 CAGTTAT
64 CAGTTAA
* * * * * * *
78247674 TCATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTTAGTTATTCAGTAA
1 T-ATCCAGTAACAGTCAATTATTCAGTAA-AATCAATTATTCAGTAATAATAAGTTATTCAGTAA
78247739 CAGTCTAA
64 CAGT-TAA
* * *
78247747 TATCCAGTAACAGTCAATTATCCGGTAACAATCAATTATTCAGTAATAATCAGTTATT
1 TATCCAGTAACAGTCAATTATTCAGTAA-AATCAATTATTCAGTAATAATAAGTTATT
78247805 TTATACCTTT
Statistics
Matches: 106, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
71 1 0.01
72 87 0.82
73 16 0.15
74 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (70 bp):
TATCCAGTAACAGTCAATTATTCAGTAAAATCAATTATTCAGTAATAATAAGTTATTCAGTAACA
GTTAA
Found at i:78248446 original size:31 final size:32
Alignment explanation
Indices: 78248390--78248452 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
78248380 CACACTTGTC
*
78248390 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
78248422 ATAATATAA-ATATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
78248453 TTATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:78251649 original size:11 final size:11
Alignment explanation
Indices: 78251635--78251667 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
78251625 ATATTATTCA
78251635 ACACTCAGTGG
1 ACACTCAGTGG
*
78251646 ACACTCAATGG
1 ACACTCAGTGG
78251657 ACACTCAGTGG
1 ACACTCAGTGG
78251668 TTAATTACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.30, C:0.27, G:0.24, T:0.18
Consensus pattern (11 bp):
ACACTCAGTGG
Found at i:78262590 original size:64 final size:63
Alignment explanation
Indices: 78262471--78262592 Score: 192
Period size: 64 Copynumber: 1.9 Consensus size: 63
78262461 GGTGAACACT
* *
78262471 TAGTACCACCCATGTGACCTAGCCAGTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTA
1 TAGTACCACCCATGCGACCTAGCCAGTATATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTA
*
78262534 TAGTATCACCCATGCGACCTAGCTACA-TATATCTCGTAGCTCTCTTGTCTACATGGTGT
1 TAGTACCACCCATGCGACCTAGC--CAGTATATCTCGTAGCTCTCTTGTCTACATGGTGT
78262593 ACACATAAAG
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
63 21 0.39
64 31 0.57
65 2 0.04
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.34
Consensus pattern (63 bp):
TAGTACCACCCATGCGACCTAGCCAGTATATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTA
Found at i:78266523 original size:42 final size:42
Alignment explanation
Indices: 78266445--78266524 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
78266435 GTGCAGGTTT
* *
78266445 CACACGGCTAAGACACACACTCGTGTTCTAGGCCGTGTAGCA
1 CACACGGCTAAGACACACACCCGTGTTCTAGCCCGTGTAGCA
* * *
78266487 CACATGGCTGAGACACACGCCCGTGTCTCT-GCCCGTGT
1 CACACGGCTAAGACACACACCCGTGT-TCTAGCCCGTGT
78266525 GCTCAATTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
42 29 0.91
43 3 0.09
ACGTcount: A:0.21, C:0.34, G:0.25, T:0.20
Consensus pattern (42 bp):
CACACGGCTAAGACACACACCCGTGTTCTAGCCCGTGTAGCA
Found at i:78274486 original size:79 final size:78
Alignment explanation
Indices: 78274384--78274606 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
78274374 GCTCCTCGTT
* *
78274384 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
78274449 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
78274464 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
78274528 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
78274542 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
78274605 GA
63 GA
78274607 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:78274501 original size:39 final size:40
Alignment explanation
Indices: 78274384--78274606 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
78274374 GCTCCTCGTT
* *
78274384 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
78274424 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
78274464 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
78274503 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
78274542 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
78274583 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78274607 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:78282405 original size:40 final size:40
Alignment explanation
Indices: 78282361--78282622 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
78282351 GCTCCTCGTT
* *
78282361 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
78282401 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78282441 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78282480 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78282519 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
78282558 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
78282599 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78282623 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:78291350 original size:30 final size:30
Alignment explanation
Indices: 78291314--78291374 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
78291304 ACCTTTCGTG
*
78291314 TTTCTTTTATAATTTATATAGGTTAAATTA
1 TTTCTTTTATAATTTATATAGGTGAAATTA
78291344 TTTCTTTTATAATTTATATAGGTGAAATTA
1 TTTCTTTTATAATTTATATAGGTGAAATTA
78291374 T
1 T
78291375 ACTTTGATCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (30 bp):
TTTCTTTTATAATTTATATAGGTGAAATTA
Found at i:78301426 original size:21 final size:21
Alignment explanation
Indices: 78301397--78301447 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
78301387 TTTCAGACCA
78301397 AACAATGTTAACCCGCCAGTT
1 AACAATGTTAACCCGCCAGTT
*
78301418 AACAGTGTTAACCCGCCAGTT
1 AACAATGTTAACCCGCCAGTT
* *
78301439 GACATTGTT
1 AACAATGTT
78301448 GTTATATCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (21 bp):
AACAATGTTAACCCGCCAGTT
Found at i:78310979 original size:13 final size:13
Alignment explanation
Indices: 78310961--78310985 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78310951 GGGTGTGTGG
78310961 GTCCACACAGGTA
1 GTCCACACAGGTA
78310974 GTCCACACAGGT
1 GTCCACACAGGT
78310986 GTGTGAGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.24, T:0.16
Consensus pattern (13 bp):
GTCCACACAGGTA
Found at i:78324980 original size:20 final size:20
Alignment explanation
Indices: 78324912--78324981 Score: 56
Period size: 20 Copynumber: 3.4 Consensus size: 20
78324902 GTTCTATTCT
78324912 AACTAAATCTCAACTTAACC
1 AACTAAATCTCAACTTAACC
* *
78324932 AACCAAAT-TACCATAATTAA--
1 AACTAAATCT--CA-ACTTAACC
78324952 ATACTTAAATCTCAACTTAACC
1 A-AC-TAAATCTCAACTTAACC
78324974 AACTAAAT
1 AACTAAAT
78324982 TACCACACAC
Statistics
Matches: 38, Mismatches: 4, Indels: 16
0.66 0.07 0.28
Matches are distributed among these distances:
19 1 0.03
20 18 0.47
21 8 0.21
22 10 0.26
23 1 0.03
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (20 bp):
AACTAAATCTCAACTTAACC
Found at i:78326316 original size:15 final size:15
Alignment explanation
Indices: 78326296--78326324 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
78326286 AATTTAAAAG
78326296 AAATAATTACATACT
1 AAATAATTACATACT
78326311 AAATAATTACATAC
1 AAATAATTACATAC
78326325 GAGCATGCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATAATTACATACT
Found at i:78333797 original size:48 final size:48
Alignment explanation
Indices: 78333735--78333927 Score: 260
Period size: 48 Copynumber: 4.0 Consensus size: 48
78333725 TATATATGTG
78333735 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
78333783 TGTGGTAAAGCCGAATGGCTAATGTGAAATATACATGAGATATATATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* ** * * ** *
78333831 TGTGGTAATGCTTAAAGGCTAATGTGAAATATGTATGAGCCATGCATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* * * *
78333879 TGTGGTAAAGCCAAATGGTTAATGTGAAATATGTATGAGATGTGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
78333927 T
1 T
78333928 ATATTGTGGC
Statistics
Matches: 124, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 124 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.32
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
Found at i:78334147 original size:47 final size:47
Alignment explanation
Indices: 78334089--78334577 Score: 906
Period size: 47 Copynumber: 10.4 Consensus size: 47
78334079 CAGCCAAGAC
78334089 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
78334136 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
78334183 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
78334230 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
78334277 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
78334324 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
78334371 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
78334418 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
78334465 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
78334512 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
78334559 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
78334578 TCCCGAAGGG
Statistics
Matches: 432, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 432 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:78336652 original size:31 final size:31
Alignment explanation
Indices: 78336611--78336674 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
78336601 CCTTTTCATA
*
78336611 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
78336642 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
78336673 TT
1 TT
78336675 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:78337376 original size:30 final size:30
Alignment explanation
Indices: 78337342--78337435 Score: 74
Period size: 30 Copynumber: 3.2 Consensus size: 30
78337332 AAGATGGAAG
78337342 AAGAGATGGTAGATTCGGCTGCAAAAGAAA
1 AAGAGATGGTAGATTCGGCTGCAAAAGAAA
** **
78337372 AAGAGA--G-A-A-AAGGGAG-AAAAGATGGAA
1 AAGAGATGGTAGATTCGGCTGCAAAAGA---AA
78337399 GAAGAGATGGTAGATTCGGCTGCAAAAGAAA
1 -AAGAGATGGTAGATTCGGCTGCAAAAGAAA
78337430 AAGAGA
1 AAGAGA
78337436 GAAAAAGACT
Statistics
Matches: 46, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
24 6 0.13
25 3 0.07
26 1 0.02
27 3 0.07
28 7 0.15
30 13 0.28
31 3 0.07
32 1 0.02
33 3 0.07
34 6 0.13
ACGTcount: A:0.49, C:0.06, G:0.33, T:0.12
Consensus pattern (30 bp):
AAGAGATGGTAGATTCGGCTGCAAAAGAAA
Found at i:78337386 original size:58 final size:58
Alignment explanation
Indices: 78337313--78337440 Score: 238
Period size: 58 Copynumber: 2.2 Consensus size: 58
78337303 AGCTGGTTTG
* *
78337313 AAAGAAAGAGAAGGGAGAAAAGATGGAAGAAGAGATGGTAGATTCGGCTGCAAAAGAA
1 AAAGAGAGAAAAGGGAGAAAAGATGGAAGAAGAGATGGTAGATTCGGCTGCAAAAGAA
78337371 AAAGAGAGAAAAGGGAGAAAAGATGGAAGAAGAGATGGTAGATTCGGCTGCAAAAGAA
1 AAAGAGAGAAAAGGGAGAAAAGATGGAAGAAGAGATGGTAGATTCGGCTGCAAAAGAA
78337429 AAAGAGAGAAAA
1 AAAGAGAGAAAA
78337441 AGACTAACCC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 68 1.00
ACGTcount: A:0.52, C:0.05, G:0.34, T:0.09
Consensus pattern (58 bp):
AAAGAGAGAAAAGGGAGAAAAGATGGAAGAAGAGATGGTAGATTCGGCTGCAAAAGAA
Found at i:78347129 original size:36 final size:36
Alignment explanation
Indices: 78347086--78347339 Score: 120
Period size: 36 Copynumber: 7.0 Consensus size: 36
78347076 AGTGTGTTTA
78347086 GCACTGGTCAGTATAACCAACAAATAAATGTGCCCT
1 GCACTGGTCAGTATAACCAACAAATAAATGTGCCCT
* * * * * * * *
78347122 GCGCTGGTTAGTA-AAGTCGACAAATGAGTCTGCCCG
1 GCACTGGTCAGTATAA-CCAACAAATAAATGTGCCCT
* * *
78347158 GCACTGGTCGGTATAACCTACAAATAAATGCGCCCT
1 GCACTGGTCAGTATAACCAACAAATAAATGTGCCCT
** * *** * * *
78347194 GTGCTGGTC-GTAAAACTGGCAAATGAGTGTGCCCA
1 GCACTGGTCAGTATAACCAACAAATAAATGTGCCCT
* * * *
78347229 GCACTAGTC-GATATAATCAACAAATAAATGCGCCAT
1 GCACTGGTCAG-TATAACCAACAAATAAATGTGCCCT
** * * *** *
78347265 GTGCT-GTACAGTAAAACCGAGACAATTGTGTGTGCCCA
1 GCACTGGT-CAGTATAACC-A-ACAAATAAATGTGCCCT
* * *
78347303 GCACTGGTCGGTATAACCGACAAATAAATGAGCCCT
1 GCACTGGTCAGTATAACCAACAAATAAATGTGCCCT
78347339 G
1 G
78347340 TGCTATTCAA
Statistics
Matches: 147, Mismatches: 63, Indels: 16
0.65 0.28 0.07
Matches are distributed among these distances:
35 29 0.20
36 91 0.62
37 4 0.03
38 21 0.14
39 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.22
Consensus pattern (36 bp):
GCACTGGTCAGTATAACCAACAAATAAATGTGCCCT
Found at i:78347326 original size:74 final size:73
Alignment explanation
Indices: 78347071--78347515 Score: 377
Period size: 72 Copynumber: 6.1 Consensus size: 73
78347061 TAATACCGAA
*** * * * *
78347071 AAATGAGTGTGTTTAGCACTGGTCAGTATAACCAACAAATAAATGTGCCCTGCGCTGGTTAGTAA
1 AAATGAGTGTGCCCAGCACTGGTCGGTATAACCAACAAATAAATGCGCCCTGTGCTGGTCAGTAA
**
78347136 AGTC-GAC
66 AACCGGAC
* * *
78347143 AAATGAGTCTGCCCGGCACTGGTCGGTATAACCTACAAATAAATGCGCCCTGTGCTGGTC-GTAA
1 AAATGAGTGTGCCCAGCACTGGTCGGTATAACCAACAAATAAATGCGCCCTGTGCTGGTCAGTAA
*
78347207 AACTGG-C
66 AACCGGAC
* * * *
78347214 AAATGAGTGTGCCCAGCACTAGTCGATATAATCAACAAATAAATGCGCCATGTGCT-GTACAGTA
1 AAATGAGTGTGCCCAGCACTGGTCGGTATAACCAACAAATAAATGCGCCCTGTGCTGGT-CAGTA
78347278 AAACCGAGAC
65 AAACCG-GAC
* * * * ** *
78347288 AATTGTGTGTGCCCAGCACTGGTCGGTATAACCGACAAATAAATGAGCCCTGTGCTATTCAATAA
1 AAATGAGTGTGCCCAGCACTGGTCGGTATAACCAACAAATAAATGCGCCCTGTGCTGGTCAGTAA
78347353 AACCGAGAC
66 AACCG-GAC
* * * * * * * * ** *
78347362 AACTGTGTGTGCCCAGTACTCGTTGGTATAATCAATAAACAAATGCGCCCTACGCTGGT-TGATA
1 AAATGAGTGTGCCCAGCACTGGTCGGTATAACCAACAAATAAATGCGCCCTGTGCTGGTCAG-TA
**
78347426 AAA-TTGAC
65 AAACCGGAC
* * ** * *
78347434 AAATGAATGTGCCCAGCA-TCGGTCAGTATAACTGATAAATAAATGTGCCCTGCT-CTGGTCAGT
1 AAATGAGTGTGCCCAGCACT-GGTCGGTATAACCAACAAATAAATGCGCCCTG-TGCTGGTCAGT
*
78347497 AAAA-CTGAC
64 AAAACCGGAC
78347506 AAATGAGTGT
1 AAATGAGTGT
78347516 TCATTCATTC
Statistics
Matches: 298, Mismatches: 65, Indels: 20
0.78 0.17 0.05
Matches are distributed among these distances:
70 2 0.01
71 57 0.19
72 122 0.41
73 2 0.01
74 114 0.38
75 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.24
Consensus pattern (73 bp):
AAATGAGTGTGCCCAGCACTGGTCGGTATAACCAACAAATAAATGCGCCCTGTGCTGGTCAGTAA
AACCGGAC
Found at i:78347494 original size:36 final size:36
Alignment explanation
Indices: 78347424--78347509 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 36
78347414 CGCTGGTTGA
* *
78347424 TAAAATTGACAAATGAATGTGCCCAGCATCGGTCAG
1 TAAAACTGACAAATAAATGTGCCCAGCATCGGTCAG
* * *
78347460 TATAACTGATAAATAAATGTGCCCTGC-TCTGGTCAG
1 TAAAACTGACAAATAAATGTGCCCAGCATC-GGTCAG
78347496 TAAAACTGACAAAT
1 TAAAACTGACAAAT
78347510 GAGTGTTCAT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
35 2 0.05
36 40 0.95
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (36 bp):
TAAAACTGACAAATAAATGTGCCCAGCATCGGTCAG
Found at i:78348087 original size:105 final size:105
Alignment explanation
Indices: 78347905--78348339 Score: 658
Period size: 105 Copynumber: 4.2 Consensus size: 105
78347895 ATATAACCAA
* *
78347905 CTTTGGAAAAACACTTATTCACCTAAAATATTAGCATTAAAATCGACATAAACACTTATTTAATC
1 CTTTGGAAAAACACTTATTCACCTATAATATCAGCATTAAAATCGACATAAACACTTATTTAATC
78347970 CTAACATTTAATTTAACATAAACATAATAGAAATGTCCAG
66 CTAACATTTAATTTAACATAAACATAATAGAAATGTCCAG
*** * *
78348010 CTTTGGAAAAACACTTATTTGTCTATAATATCAGCATTAAAATCAATATAAACACTTATTTAATC
1 CTTTGGAAAAACACTTATTCACCTATAATATCAGCATTAAAATCGACATAAACACTTATTTAATC
* * *
78348075 CTAATATTTAATTTAACATAAACATAATAAAAATGTCGAG
66 CTAACATTTAATTTAACATAAACATAATAGAAATGTCCAG
** * * *
78348115 CTTTGGAAAAACACTTATTTGCTTATAATATCAACATTAAAATCGACATAAACACTTATTTAGTC
1 CTTTGGAAAAACACTTATTCACCTATAATATCAGCATTAAAATCGACATAAACACTTATTTAATC
78348180 CTAACATTTAATTTAACATAAACATAATAGAAATGTCCAG
66 CTAACATTTAATTTAACATAAACATAATAGAAATGTCCAG
* * * * *
78348220 CTTTGGAAAAACACTTATACACCTATAATATTAGCAATAAAATTGACATAAACATTTATTTAATC
1 CTTTGGAAAAACACTTATTCACCTATAATATCAGCATTAAAATCGACATAAACACTTATTTAATC
*
78348285 CTAACATTTAATTTAACATAAACAAAATAGAAATGTCCAG
66 CTAACATTTAATTTAACATAAACATAATAGAAATGTCCAG
*
78348325 C-TTGG-ACAACACTTA
1 CTTTGGAAAAACACTTA
78348340 AAACATGCTT
Statistics
Matches: 299, Mismatches: 31, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
103 9 0.03
104 4 0.01
105 286 0.96
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (105 bp):
CTTTGGAAAAACACTTATTCACCTATAATATCAGCATTAAAATCGACATAAACACTTATTTAATC
CTAACATTTAATTTAACATAAACATAATAGAAATGTCCAG
Found at i:78348308 original size:18 final size:17
Alignment explanation
Indices: 78348265--78348308 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
78348255 AATAAAATTG
78348265 ACATAAACATTTATTTA
1 ACATAAACATTTATTTA
*
78348282 ATCCT-AACATTTAATTTA
1 A-CATAAACATTT-ATTTA
78348300 ACATAAACA
1 ACATAAACA
78348309 AAATAGAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (17 bp):
ACATAAACATTTATTTA
Found at i:78348352 original size:23 final size:23
Alignment explanation
Indices: 78348326--78348432 Score: 90
Period size: 23 Copynumber: 4.7 Consensus size: 23
78348316 AATGTCCAGC
* *
78348326 TTGGACAACACTTAAAACATGCT
1 TTGGACAACATTTAAAACATACT
** * *
78348349 TTGGATGACATTTAAAGCATATT
1 TTGGACAACATTTAAAACATACT
* *
78348372 TTGGACAAGATTTAAAACTTACT
1 TTGGACAACATTTAAAACATACT
* *
78348395 TT-GACAGCATTTGAAACATACT
1 TTGGACAACATTTAAAACATACT
* * *
78348417 TTTGCCAGCATTTAAA
1 TTGGACAACATTTAAA
78348433 TGTAATACCC
Statistics
Matches: 65, Mismatches: 18, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
22 18 0.28
23 47 0.72
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (23 bp):
TTGGACAACATTTAAAACATACT
Found at i:78354728 original size:122 final size:122
Alignment explanation
Indices: 78354511--78354754 Score: 461
Period size: 122 Copynumber: 2.0 Consensus size: 122
78354501 TAAACCCTAA
* *
78354511 CTATGGAGAACCCTTGAAATTTCTTCCTAATGAAGAATATGGACATATTTTGCCATCTTTTTCCT
1 CTATGGAGAACCCTTGAAATTTCGTCCTAATGAAGAAGATGGACATATTTTGCCATCTTTTTCCT
*
78354576 TTTTTTAATCTTTTAATTACCAAATGACTAAAATACCCTTCATTAAAAACTTTGGTT
66 TTTTTTAATCTTTTAATTACCAAATAACTAAAATACCCTTCATTAAAAACTTTGGTT
78354633 CTATGGAGAACCCTTGAAATTTCGTCCTAATGAAGAAGATGGACATATTTTGCCATCTTTTTCCT
1 CTATGGAGAACCCTTGAAATTTCGTCCTAATGAAGAAGATGGACATATTTTGCCATCTTTTTCCT
78354698 TTTTTTAATCTTTTAATTACCAAATAACTAAAATACCCTTCATTAAAAACTTTGGTT
66 TTTTTTAATCTTTTAATTACCAAATAACTAAAATACCCTTCATTAAAAACTTTGGTT
78354755 ATTTCTACCT
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (122 bp):
CTATGGAGAACCCTTGAAATTTCGTCCTAATGAAGAAGATGGACATATTTTGCCATCTTTTTCCT
TTTTTTAATCTTTTAATTACCAAATAACTAAAATACCCTTCATTAAAAACTTTGGTT
Found at i:78355882 original size:25 final size:25
Alignment explanation
Indices: 78355854--78355923 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
78355844 ATAATTTAAA
*
78355854 CTGAAAATACTGTAGATAGTATATT
1 CTGAAAATACTGTAGATAGTATACT
* *
78355879 CTGAAACTACTGTAGGTAGTATACT
1 CTGAAAATACTGTAGATAGTATACT
* * *
78355904 ATGAAAACACTCTAGATAGT
1 CTGAAAATACTGTAGATAGT
78355924 GTATATCGAG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (25 bp):
CTGAAAATACTGTAGATAGTATACT
Found at i:78356641 original size:55 final size:55
Alignment explanation
Indices: 78356569--78356687 Score: 136
Period size: 55 Copynumber: 2.2 Consensus size: 55
78356559 TGTGTGCGAC
* * * * *
78356569 ACTGACTTTAGGGCACGGGC-ATGACACACGCCTGTGTGGCCTACCCGTGGTCAAT
1 ACTGACTTTAGGACAC-GGCTATGACACACGCCCGTATGGCCTAACCGTGGACAAT
* *
78356624 ACTGACTTATA-GACACGGCTATGGCACACGCCCGTATGGCCTAATCGTGGACAAT
1 ACTGACTT-TAGGACACGGCTATGACACACGCCCGTATGGCCTAACCGTGGACAAT
78356679 ACTGA-TTTA
1 ACTGACTTTA
78356688 AAAGTTTAAG
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
53 2 0.04
54 5 0.09
55 46 0.84
56 2 0.04
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (55 bp):
ACTGACTTTAGGACACGGCTATGACACACGCCCGTATGGCCTAACCGTGGACAAT
Found at i:78358809 original size:29 final size:29
Alignment explanation
Indices: 78358746--78358813 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
78358736 TAATCAACCG
78358746 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
78358775 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
78358804 CGCACACTTA
1 CGCACACTTA
78358814 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:78358925 original size:174 final size:174
Alignment explanation
Indices: 78358635--78358962 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
78358625 AACTCAAGGT
* *
78358635 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
78358700 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
78358765 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
78358809 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
78358874 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
78358939 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
78358963 TGTACAATTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:78358954 original size:29 final size:30
Alignment explanation
Indices: 78358915--78358993 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
78358905 CTTAATAATC
78358915 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
78358945 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
78358974 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
78358994 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:78361037 original size:94 final size:94
Alignment explanation
Indices: 78360845--78361091 Score: 263
Period size: 94 Copynumber: 2.7 Consensus size: 94
78360835 TGTATACGTG
* * ** ** *
78360845 CTGATGCATTTCCCAAACATGTCTTACACTAGCACGAAACT-TA-GTTGATG-CATGTTCCAGAC
1 CTGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTATGCCGATGCCATGTCCCAGAC
* *
78360907 ACGTCTTACACTGCCTAACATCATCGAGG
66 ACGTCTTACACAGCCTAACATCATCGAGA
* *
78360936 CTGATGCATGTCCCAGACATGTCTTACACTGGCACTCACCTCTATGCCGATGCCATGTCCCAGAC
1 CTGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTATGCCGATGCCATGTCCCAGAC
* * *
78361001 GACGTCTTACACAGGCTATCATGAT-GCA-A
66 -ACGTCTTACACAGCCTAACATCATCG-AGA
* ** *
78361030 CTGATGCATGTCCCAGACACGTCTTACACTAGC-CTTCGTCTCAATGCCGATGCCATGTCCCA
1 CTGATGCATGTCCCAGACATGTCTTACACTAGCAC-TCAACTCTATGCCGATGCCATGTCCCA
78361092 AACATGGTAT
Statistics
Matches: 131, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
91 35 0.27
92 2 0.02
93 6 0.05
94 67 0.51
95 21 0.16
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (94 bp):
CTGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTATGCCGATGCCATGTCCCAGAC
ACGTCTTACACAGCCTAACATCATCGAGA
Found at i:78361087 original size:47 final size:47
Alignment explanation
Indices: 78360891--78361091 Score: 173
Period size: 47 Copynumber: 4.3 Consensus size: 47
78360881 AAACTTAGTT
* * * * *
78360891 GATGCATGTTCCAGACACGTCTTACACT-GCCTAACATCATCGAGGCT
1 GATGCATGTCCCAGACACGTCTTACACTAGCCTATCATC-TCAATGCC
* * * *
78360938 GATGCATGTCCCAGACATGTCTTACACT-GGC-ACTCACCTCTATGCC
1 GATGCATGTCCCAGACACGTCTTACACTAGCCTA-TCATCTCAATGCC
* * *
78360984 GATGCCATGTCCCAGACGACGTCTTACAC-AGGCTATCATGATGCAA--CT
1 GATG-CATGTCCCAGAC-ACGTCTTACACTAGCCTATCAT-CT-CAATGCC
*
78361032 GATGCATGTCCCAGACACGTCTTACACTAGCCT-TCGTCTCAATGCC
1 GATGCATGTCCCAGACACGTCTTACACTAGCCTATCATCTCAATGCC
78361078 GATGCCATGTCCCA
1 GATG-CATGTCCCA
78361092 AACATGGTAT
Statistics
Matches: 126, Mismatches: 17, Indels: 22
0.76 0.10 0.13
Matches are distributed among these distances:
44 3 0.02
45 1 0.01
46 29 0.23
47 68 0.54
48 21 0.17
49 2 0.02
50 2 0.02
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (47 bp):
GATGCATGTCCCAGACACGTCTTACACTAGCCTATCATCTCAATGCC
Found at i:78366365 original size:40 final size:40
Alignment explanation
Indices: 78366321--78366424 Score: 190
Period size: 40 Copynumber: 2.6 Consensus size: 40
78366311 AGCAAAAATT
78366321 CCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAATG
1 CCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAATG
* *
78366361 CCTTCGGGACCTAACCCGGTTATAATAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAATG
78366401 CCTTCGGGACTTAACCCGGTTATA
1 CCTTCGGGACTTAACCCGGTTATA
78366425 TTTTTTTCCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAATG
Found at i:78380912 original size:40 final size:40
Alignment explanation
Indices: 78380857--78381154 Score: 485
Period size: 40 Copynumber: 7.5 Consensus size: 40
78380847 TGGATGATAA
* * *
78380857 CCGGGCTAAGTCCCGAAGGCATTTGGGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
78380897 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
78380937 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
78380977 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
78381017 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
78381057 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
78381097 CCGGGCTATGTCCCGAAGGCATTGGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
78381137 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
78381155 TACTTGGCTT
Statistics
Matches: 247, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
39 16 0.06
40 231 0.94
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:78389180 original size:18 final size:19
Alignment explanation
Indices: 78389159--78389200 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
78389149 TTATAATAAA
* *
78389159 ATTAATGTTTATTT-TTCT
1 ATTAATATTTATTTGTGCT
*
78389177 ATTATTATTTATTTGTGCT
1 ATTAATATTTATTTGTGCT
78389196 ATTAA
1 ATTAA
78389201 ACTTTTTTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.62
Consensus pattern (19 bp):
ATTAATATTTATTTGTGCT
Found at i:78393536 original size:20 final size:21
Alignment explanation
Indices: 78393486--78393536 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
78393476 AATAAGGTAA
*
78393486 AGAAAGGAAAGAAAGAAATAG
1 AGAAAAGAAAGAAAGAAATAG
*
78393507 AGAATA-AAAGAAAGAAA-AG
1 AGAAAAGAAAGAAAGAAATAG
78393526 -GAAAAAGAAAG
1 AG-AAAAGAAAG
78393537 GGAAGTCTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 1 0.04
19 5 0.20
20 15 0.60
21 4 0.16
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (21 bp):
AGAAAAGAAAGAAAGAAATAG
Found at i:78397472 original size:20 final size:21
Alignment explanation
Indices: 78397431--78397472 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
78397421 GTATACGGTC
*
78397431 AAAATGTTTATGAAGTGAAAA
1 AAAATGTGTATGAAGTGAAAA
*
78397452 AAAATGTGT-TGAA-TGACAA
1 AAAATGTGTATGAAGTGAAAA
78397471 AA
1 AA
78397473 TGATGACCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 7 0.37
20 4 0.21
21 8 0.42
ACGTcount: A:0.52, C:0.02, G:0.19, T:0.26
Consensus pattern (21 bp):
AAAATGTGTATGAAGTGAAAA
Found at i:78402486 original size:23 final size:23
Alignment explanation
Indices: 78402456--78402501 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
78402446 ATTAATGGTC
*
78402456 TAACTACCACGTAAGGACTCATA
1 TAACTACCACATAAGGACTCATA
*
78402479 TAACTACCATATAAGGACTCATA
1 TAACTACCACATAAGGACTCATA
78402502 ATTTAAGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (23 bp):
TAACTACCACATAAGGACTCATA
Found at i:78404140 original size:23 final size:23
Alignment explanation
Indices: 78404114--78404159 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
78404104 AACCTCAATT
78404114 GTAGATAGGATTTAATCTCGACC
1 GTAGATAGGATTTAATCTCGACC
78404137 GTAGATAGGATTTAATCTCGACC
1 GTAGATAGGATTTAATCTCGACC
78404160 ATCGATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (23 bp):
GTAGATAGGATTTAATCTCGACC
Found at i:78404166 original size:23 final size:23
Alignment explanation
Indices: 78404115--78404166 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
78404105 ACCTCAATTG
*
78404115 TAGATAGGATTTAATCTCGACCG
1 TAGATAGGATTTAATCTCGACCA
78404138 TAGATAGGATTTAATCTCGACCA
1 TAGATAGGATTTAATCTCGACCA
*
78404161 TCGATA
1 TAGATA
78404167 TAACTCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (23 bp):
TAGATAGGATTTAATCTCGACCA
Found at i:78434680 original size:7 final size:7
Alignment explanation
Indices: 78434663--78434708 Score: 60
Period size: 7 Copynumber: 6.7 Consensus size: 7
78434653 TTGCTTTAGT
78434663 AAAAACAA
1 AAAAAC-A
78434671 AAAAACA
1 AAAAACA
78434678 AAAAACA
1 AAAAACA
78434685 AAAAAC-
1 AAAAACA
78434691 -AAAACA
1 AAAAACA
*
78434697 AAAAAGA
1 AAAAACA
78434704 AAAAA
1 AAAAA
78434709 GATTGTTTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
5 5 0.14
7 24 0.69
8 6 0.17
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (7 bp):
AAAAACA
Found at i:78434696 original size:19 final size:19
Alignment explanation
Indices: 78434672--78434708 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
78434662 TAAAAACAAA
78434672 AAAACAAAAAACAAAAAAC
1 AAAACAAAAAACAAAAAAC
*
78434691 AAAACAAAAAAGAAAAAA
1 AAAACAAAAAACAAAAAA
78434709 GATTGTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (19 bp):
AAAACAAAAAACAAAAAAC
Found at i:78442755 original size:17 final size:17
Alignment explanation
Indices: 78442729--78442764 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
78442719 GAAAGATTCA
* *
78442729 TTATTGATTTTGTTATT
1 TTATTAATTTTATTATT
78442746 TTATTAATTTTATTATT
1 TTATTAATTTTATTATT
78442763 TT
1 TT
78442765 GCATATCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (17 bp):
TTATTAATTTTATTATT
Found at i:78446893 original size:16 final size:16
Alignment explanation
Indices: 78446872--78446905 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
78446862 TGTGACCAAT
* *
78446872 AGAAAAGGGGGAAAAA
1 AGAAAAGGAGAAAAAA
78446888 AGAAAAGGAGAAAAAA
1 AGAAAAGGAGAAAAAA
78446904 AG
1 AG
78446906 GGAATTATCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (16 bp):
AGAAAAGGAGAAAAAA
Found at i:78469438 original size:25 final size:25
Alignment explanation
Indices: 78469410--78469465 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
78469400 TTATATTATT
* * *
78469410 ATAAAACTAATAAAGTAAATAAAAC
1 ATAAAACGAATAAAGGAAACAAAAC
* *
78469435 ATAAAAGGAATAAAGGAAACAAAGC
1 ATAAAACGAATAAAGGAAACAAAAC
78469460 ATAAAA
1 ATAAAA
78469466 AGAAACAGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.68, C:0.07, G:0.11, T:0.14
Consensus pattern (25 bp):
ATAAAACGAATAAAGGAAACAAAAC
Found at i:78470494 original size:23 final size:23
Alignment explanation
Indices: 78470464--78470553 Score: 108
Period size: 23 Copynumber: 3.9 Consensus size: 23
78470454 ACTTAGTGCC
*
78470464 ATTCTGGTGAGTTTGGGTGGATT
1 ATTCTGGTGTGTTTGGGTGGATT
* *
78470487 ATTCTGGTGTGTTTGGGAGGAAT
1 ATTCTGGTGTGTTTGGGTGGATT
* * * *
78470510 ATTTTAGTGTGTTTGGATGGATC
1 ATTCTGGTGTGTTTGGGTGGATT
*
78470533 ATTCTGGTGTGTTTGGTTGGA
1 ATTCTGGTGTGTTTGGGTGGA
78470554 ATTCGTGTAT
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 55 1.00
ACGTcount: A:0.14, C:0.04, G:0.37, T:0.44
Consensus pattern (23 bp):
ATTCTGGTGTGTTTGGGTGGATT
Found at i:78472643 original size:15 final size:17
Alignment explanation
Indices: 78472625--78472657 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
78472615 TATTTCATAC
78472625 CATC-ACTTTTC-TCTT
1 CATCAACTTTTCATCTT
78472640 CATCAACTTTTCATCTT
1 CATCAACTTTTCATCTT
78472657 C
1 C
78472658 TAGCTGGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 7 0.44
17 5 0.31
ACGTcount: A:0.18, C:0.33, G:0.00, T:0.48
Consensus pattern (17 bp):
CATCAACTTTTCATCTT
Found at i:78476908 original size:23 final size:23
Alignment explanation
Indices: 78476876--78476990 Score: 128
Period size: 23 Copynumber: 5.0 Consensus size: 23
78476866 AGATACACAA
78476876 ATTCCAACCAAACACACCAGAATT
1 ATTCC-ACCAAACACACCAGAATT
* *
78476900 ATTCTACCAAACACACCAGAATG
1 ATTCCACCAAACACACCAGAATT
*
78476923 A-TCCATCCAAACACACCA-AAAT
1 ATTCCA-CCAAACACACCAGAATT
*
78476945 ATTCCTCCTAAACACACCAGAA-T
1 ATTCCACC-AAACACACCAGAATT
*
78476968 AATCCACCCAAACACACCAGAAT
1 ATTCCA-CCAAACACACCAGAAT
78476991 GGCACTAAGT
Statistics
Matches: 77, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
22 8 0.10
23 61 0.79
24 8 0.10
ACGTcount: A:0.45, C:0.35, G:0.04, T:0.16
Consensus pattern (23 bp):
ATTCCACCAAACACACCAGAATT
Found at i:78476958 original size:46 final size:46
Alignment explanation
Indices: 78476878--78476989 Score: 156
Period size: 46 Copynumber: 2.4 Consensus size: 46
78476868 ATACACAAAT
* *
78476878 TCCAACCAAACACACCAGAATTATTCTACCAAACACACCAGAATGA
1 TCCAACCAAACACACCAGAAATATTCTACCAAACACACCAGAATAA
*
78476924 TCCATCCAAACACACCA-AAATATTCCT-CCTAAACACACCAGAATAA
1 TCCAACCAAACACACCAGAAATATT-CTACC-AAACACACCAGAATAA
*
78476970 TCCACCCAAACACACCAGAA
1 TCCAACCAAACACACCAGAA
78476990 TGGCACTAAG
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
45 8 0.14
46 49 0.83
47 2 0.03
ACGTcount: A:0.46, C:0.36, G:0.04, T:0.14
Consensus pattern (46 bp):
TCCAACCAAACACACCAGAAATATTCTACCAAACACACCAGAATAA
Found at i:78478248 original size:20 final size:22
Alignment explanation
Indices: 78478215--78478265 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
78478205 TATAATAACT
*
78478215 TAATTTAATAATATAT-TT-TA
1 TAATTAAATAATATATATTATA
*
78478235 TAATTAAATCATATATAATTATA
1 TAATTAAATAATATAT-ATTATA
78478258 TAATTAAA
1 TAATTAAA
78478266 ATCTAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 14 0.54
22 2 0.08
23 10 0.38
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
TAATTAAATAATATATATTATA
Found at i:78479057 original size:13 final size:13
Alignment explanation
Indices: 78479039--78479063 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78479029 CGTCTTTCAT
78479039 TTTTATTTATTTA
1 TTTTATTTATTTA
78479052 TTTTATTTATTT
1 TTTTATTTATTT
78479064 TATGTTCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTATTTATTTA
Found at i:78479830 original size:18 final size:17
Alignment explanation
Indices: 78479807--78479840 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
78479797 AAATATTAAT
78479807 TAATTAAATTAATTTTCC
1 TAATTAAATT-ATTTTCC
78479825 TAATTAAATTATTTTC
1 TAATTAAATTATTTTC
78479841 TCAACACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (17 bp):
TAATTAAATTATTTTCC
Found at i:78482413 original size:14 final size:14
Alignment explanation
Indices: 78482396--78482440 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
78482386 GGTTGAGAAA
78482396 ATAATTTAATTGGG
1 ATAATTTAATTGGG
* *
78482410 ATAA-TTAGTT--A
1 ATAATTTAATTGGG
78482421 ATAATTTAATTGGG
1 ATAATTTAATTGGG
78482435 ATAATT
1 ATAATT
78482441 AGTTGAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
11 4 0.17
12 5 0.21
13 5 0.21
14 10 0.42
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (14 bp):
ATAATTTAATTGGG
Found at i:78482429 original size:25 final size:25
Alignment explanation
Indices: 78482395--78482444 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
78482385 GGGTTGAGAA
78482395 AATAATTTAATTGGGATAATTAGTT
1 AATAATTTAATTGGGATAATTAGTT
78482420 AATAATTTAATTGGGATAATTAGTT
1 AATAATTTAATTGGGATAATTAGTT
78482445 GAATTTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (25 bp):
AATAATTTAATTGGGATAATTAGTT
Found at i:78491633 original size:56 final size:56
Alignment explanation
Indices: 78491547--78491659 Score: 181
Period size: 56 Copynumber: 2.0 Consensus size: 56
78491537 GAAGAATCCC
* *
78491547 TATAATCAAGGATTGACTCAATCTTAAAGAAAGTAAGAAAGAAAATCTCATCAAAT
1 TATAATCAAGGATTGACTCAATCCTAAAGAAAGAAAGAAAGAAAATCTCATCAAAT
* * *
78491603 TATAATCAAGGATTGACTCCATCCTAAAGAAAGAAATAAATAAAATCTCATCAAAT
1 TATAATCAAGGATTGACTCAATCCTAAAGAAAGAAAGAAAGAAAATCTCATCAAAT
78491659 T
1 T
78491660 TGTCTCAATC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.50, C:0.14, G:0.11, T:0.26
Consensus pattern (56 bp):
TATAATCAAGGATTGACTCAATCCTAAAGAAAGAAAGAAAGAAAATCTCATCAAAT
Found at i:78494135 original size:25 final size:25
Alignment explanation
Indices: 78494107--78494157 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
78494097 CTGTGATGAG
78494107 TAAGGTGCCAACAGAGCCCATGAAC
1 TAAGGTGCCAACAGAGCCCATGAAC
78494132 TAAGGTGCCAACAGAGCCCATGAAC
1 TAAGGTGCCAACAGAGCCCATGAAC
78494157 T
1 T
78494158 CTTTTAGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.27, G:0.24, T:0.14
Consensus pattern (25 bp):
TAAGGTGCCAACAGAGCCCATGAAC
Found at i:78497366 original size:536 final size:536
Alignment explanation
Indices: 78496354--78497426 Score: 2146
Period size: 536 Copynumber: 2.0 Consensus size: 536
78496344 AGATAAGGCG
78496354 CGTCTTACGATACACGGAGAACGAGCAAGAAGACGATACTCAACCGCCAACCGAAGAGATGGCTG
1 CGTCTTACGATACACGGAGAACGAGCAAGAAGACGATACTCAACCGCCAACCGAAGAGATGGCTG
78496419 AAAACCAAGGCAATCAGCTACCTCCTGCAATTACGGCTAATCAAAATCCTGCTCCACGCACTATG
66 AAAACCAAGGCAATCAGCTACCTCCTGCAATTACGGCTAATCAAAATCCTGCTCCACGCACTATG
78496484 TATGATTATGCTAAACCTTCTTTAACAGGAACTAAATCTAGTATAGTTAGACCTGCTGTAGCTGT
131 TATGATTATGCTAAACCTTCTTTAACAGGAACTAAATCTAGTATAGTTAGACCTGCTGTAGCTGT
78496549 AAATACTTTTGAATTAAAACCTAACACTATTCAGATGATACAGCAGTTTGTTCAGTTTGATGGTT
196 AAATACTTTTGAATTAAAACCTAACACTATTCAGATGATACAGCAGTTTGTTCAGTTTGATGGTT
78496614 TGCAGGATGAAGATCCCAACGCTCACTTAGCAAATTTCCTAGAATTTTGCGATACATTCAAAATC
261 TGCAGGATGAAGATCCCAACGCTCACTTAGCAAATTTCCTAGAATTTTGCGATACATTCAAAATC
78496679 AATGGCATTTCTAATTATGCCATTCGTCTTCGGTTATTTCCCTTTTCACTGAGAAACAAAGCTAA
326 AATGGCATTTCTAATTATGCCATTCGTCTTCGGTTATTTCCCTTTTCACTGAGAAACAAAGCTAA
78496744 ACAGTGGGTGAACTTGTTACCACGAAGGTCTATCACTACTTGGGAACAAATAACCGAGAAATTTT
391 ACAGTGGGTGAACTTGTTACCACGAAGGTCTATCACTACTTGGGAACAAATAACCGAGAAATTTT
78496809 TTACTAAAATATTTTTTGCCGGCTAAAACAGCTAAATTACGTAATGATATCTCTTCTTTTGTGCA
456 TTACTAAAATATTTTTTGCCGGCTAAAACAGCTAAATTACGTAATGATATCTCTTCTTTTGTGCA
78496874 GATGGATTTAGAAACA
521 GATGGATTTAGAAACA
78496890 CGTCTTACGATACACGGAGAACGAGCAAGAAGACGATACTCAACCGCCAACCGAAGAGATGGCTG
1 CGTCTTACGATACACGGAGAACGAGCAAGAAGACGATACTCAACCGCCAACCGAAGAGATGGCTG
78496955 AAAACCAAGGCAATCAGCTACCTCCTGCAATTACGGCTAATCAAAATCCTGCTCCACGCACTATG
66 AAAACCAAGGCAATCAGCTACCTCCTGCAATTACGGCTAATCAAAATCCTGCTCCACGCACTATG
78497020 TATGATTATGCTAAACCTTCTTTAACAGGAACTAAATCTAGTATAGTTAGACCTGCTGTAGCTGT
131 TATGATTATGCTAAACCTTCTTTAACAGGAACTAAATCTAGTATAGTTAGACCTGCTGTAGCTGT
78497085 AAATACTTTTGAATTAAAACCTAACACTATTCAGATGATACAGCAGTTTGTTCAGTTTGATGGTT
196 AAATACTTTTGAATTAAAACCTAACACTATTCAGATGATACAGCAGTTTGTTCAGTTTGATGGTT
78497150 TGCAGGATGAAGATCCCAACGCTCACTTAGCAAATTTCCTAGAATTTTGCGATACATTCAAAATC
261 TGCAGGATGAAGATCCCAACGCTCACTTAGCAAATTTCCTAGAATTTTGCGATACATTCAAAATC
78497215 AATGGCATTTCTAATTATGCCATTCGTCTTCGGTTATTTCCCTTTTCACTGAGAAACAAAGCTAA
326 AATGGCATTTCTAATTATGCCATTCGTCTTCGGTTATTTCCCTTTTCACTGAGAAACAAAGCTAA
78497280 ACAGTGGGTGAACTTGTTACCACGAAGGTCTATCACTACTTGGGAACAAATAACCGAGAAATTTT
391 ACAGTGGGTGAACTTGTTACCACGAAGGTCTATCACTACTTGGGAACAAATAACCGAGAAATTTT
78497345 TTACTAAAATATTTTTTGCCGGCTAAAACAGCTAAATTACGTAATGATATCTCTTCTTTTGTGCA
456 TTACTAAAATATTTTTTGCCGGCTAAAACAGCTAAATTACGTAATGATATCTCTTCTTTTGTGCA
78497410 GATGGATTTAGAAACA
521 GATGGATTTAGAAACA
78497426 C
1 C
78497427 TTTAAAATGC
Statistics
Matches: 537, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
536 537 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (536 bp):
CGTCTTACGATACACGGAGAACGAGCAAGAAGACGATACTCAACCGCCAACCGAAGAGATGGCTG
AAAACCAAGGCAATCAGCTACCTCCTGCAATTACGGCTAATCAAAATCCTGCTCCACGCACTATG
TATGATTATGCTAAACCTTCTTTAACAGGAACTAAATCTAGTATAGTTAGACCTGCTGTAGCTGT
AAATACTTTTGAATTAAAACCTAACACTATTCAGATGATACAGCAGTTTGTTCAGTTTGATGGTT
TGCAGGATGAAGATCCCAACGCTCACTTAGCAAATTTCCTAGAATTTTGCGATACATTCAAAATC
AATGGCATTTCTAATTATGCCATTCGTCTTCGGTTATTTCCCTTTTCACTGAGAAACAAAGCTAA
ACAGTGGGTGAACTTGTTACCACGAAGGTCTATCACTACTTGGGAACAAATAACCGAGAAATTTT
TTACTAAAATATTTTTTGCCGGCTAAAACAGCTAAATTACGTAATGATATCTCTTCTTTTGTGCA
GATGGATTTAGAAACA
Found at i:78501841 original size:18 final size:18
Alignment explanation
Indices: 78501806--78501842 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
78501796 AATCCTCTTA
* *
78501806 TCTTTTTATTTTTCTTTT
1 TCTTTTTATTTCTATTTT
78501824 TCTTTTTATTTCTATTTT
1 TCTTTTTATTTCTATTTT
78501842 T
1 T
78501843 ATTTCAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.81
Consensus pattern (18 bp):
TCTTTTTATTTCTATTTT
Found at i:78502144 original size:30 final size:30
Alignment explanation
Indices: 78502108--78502165 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
78502098 GGCAGGTACT
**
78502108 ACTTTCCCCCGACACTCCAGCCTCAGAACC
1 ACTTTCCCCAAACACTCCAGCCTCAGAACC
* *
78502138 ACTTTCCCTAAACACTCCAGCCTTAGAA
1 ACTTTCCCCAAACACTCCAGCCTCAGAA
78502166 TCAAGCTCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.43, G:0.09, T:0.21
Consensus pattern (30 bp):
ACTTTCCCCAAACACTCCAGCCTCAGAACC
Found at i:78502856 original size:8 final size:8
Alignment explanation
Indices: 78502843--78502871 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
78502833 TAACCCTCAT
78502843 CATTAACC
1 CATTAACC
78502851 CATTAACC
1 CATTAACC
78502859 CATTAACC
1 CATTAACC
78502867 CATTA
1 CATTA
78502872 TTGTTGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.28
Consensus pattern (8 bp):
CATTAACC
Found at i:78503768 original size:11 final size:11
Alignment explanation
Indices: 78503754--78503778 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
78503744 ACCAAGAGTC
78503754 AAAAGGAGCCA
1 AAAAGGAGCCA
78503765 AAAAGGAGCCA
1 AAAAGGAGCCA
78503776 AAA
1 AAA
78503779 GGGACAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.16, G:0.24, T:0.00
Consensus pattern (11 bp):
AAAAGGAGCCA
Found at i:78504965 original size:47 final size:45
Alignment explanation
Indices: 78504879--78505005 Score: 191
Period size: 47 Copynumber: 2.8 Consensus size: 45
78504869 CAAAAAGTCA
78504879 TATAACCCCTAAAACCCTAAACCCCAAAAAATCATAAACACTAATC
1 TATAACCCCTAAAACCCTAAACCCCAAAAAA-CATAAACACTAATC
* * *
78504925 TATAACCCCTAAAATCCTTAAACCCTAAAAAACACTAAACATTAATC
1 TATAACCCCTAAAA-CCCTAAACCCCAAAAAACA-TAAACACTAATC
*
78504972 TATAACCCTTAAAACCCTAAACCCCAAAAAACAT
1 TATAACCCCTAAAACCCTAAACCCCAAAAAACAT
78505006 CATATGGATG
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
45 1 0.01
46 33 0.45
47 39 0.53
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.20
Consensus pattern (45 bp):
TATAACCCCTAAAACCCTAAACCCCAAAAAACATAAACACTAATC
Found at i:78505159 original size:7 final size:7
Alignment explanation
Indices: 78505107--78505177 Score: 52
Period size: 7 Copynumber: 10.0 Consensus size: 7
78505097 TTTATTTTTG
*
78505107 GGTTTAG
1 GGTTTAA
78505114 GGTTTAA
1 GGTTTAA
**
78505121 TATTTAA
1 GGTTTAA
*
78505128 GGTCTAA
1 GGTTTAA
*
78505135 GGTCTAA
1 GGTTTAA
* *
78505142 GGTCTAT
1 GGTTTAA
*
78505149 GGTTTAG
1 GGTTTAA
*
78505156 GGTTTTAT
1 GG-TTTAA
78505164 GGTTTAA
1 GGTTTAA
78505171 GGTTTAA
1 GGTTTAA
78505178 TGGCCATGGG
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
7 46 0.88
8 6 0.12
ACGTcount: A:0.24, C:0.04, G:0.28, T:0.44
Consensus pattern (7 bp):
GGTTTAA
Found at i:78505166 original size:15 final size:15
Alignment explanation
Indices: 78505146--78505180 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
78505136 GTCTAAGGTC
*
78505146 TATGGTTTAGGGTTT
1 TATGGTTTAAGGTTT
78505161 TATGGTTTAAGGTTT
1 TATGGTTTAAGGTTT
*
78505176 AATGG
1 TATGG
78505181 CCATGGGTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (15 bp):
TATGGTTTAAGGTTT
Found at i:78505548 original size:7 final size:7
Alignment explanation
Indices: 78505481--78505548 Score: 66
Period size: 7 Copynumber: 9.7 Consensus size: 7
78505471 GGGGTAGAAA
78505481 TTTAGGG
1 TTTAGGG
* *
78505488 TTTATGT
1 TTTAGGG
*
78505495 TTTATGG
1 TTTAGGG
78505502 TTTAGGG
1 TTTAGGG
78505509 TTTAAGGG
1 TTT-AGGG
*
78505517 TTAAGGG
1 TTTAGGG
*
78505524 TTAAGGG
1 TTTAGGG
78505531 -TTAGGG
1 TTTAGGG
*
78505537 GTTAGGG
1 TTTAGGG
78505544 TTTAG
1 TTTAG
78505549 ATTAATTAGT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
6 5 0.10
7 41 0.79
8 6 0.12
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.43
Consensus pattern (7 bp):
TTTAGGG
Found at i:78505653 original size:18 final size:16
Alignment explanation
Indices: 78505613--78505654 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
78505603 AGAGATAATA
78505613 TTAAATT-TAATATAT
1 TTAAATTATAATATAT
*
78505628 TAAAATTATGAATATAGT
1 TTAAATTAT-AATATA-T
78505646 TTAAATTAT
1 TTAAATTAT
78505655 TTAAGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 6 0.27
16 1 0.05
17 6 0.27
18 9 0.41
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (16 bp):
TTAAATTATAATATAT
Found at i:78506154 original size:37 final size:37
Alignment explanation
Indices: 78506101--78506231 Score: 181
Period size: 37 Copynumber: 3.5 Consensus size: 37
78506091 TTTTCGTTTG
* *
78506101 TCGCCTTCGCCCCGTGCATCACAACCCATCCCCTCCA
1 TCGCCTTCGCCCCGTGCATCGCAACCCATCTCCTCCA
* *
78506138 TCACCTTCGCCCCGTGCATCGCAAACCATCTCCTCCA
1 TCGCCTTCGCCCCGTGCATCGCAACCCATCTCCTCCA
* * *
78506175 TTGCCTTCACCCTGTGCATCGCAACCCATCTCCTCCA
1 TCGCCTTCGCCCCGTGCATCGCAACCCATCTCCTCCA
* *
78506212 TCGCCTTCGCTCTGTGCATC
1 TCGCCTTCGCCCCGTGCATC
78506232 TGCTGCATAG
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.15, C:0.48, G:0.12, T:0.24
Consensus pattern (37 bp):
TCGCCTTCGCCCCGTGCATCGCAACCCATCTCCTCCA
Found at i:78506535 original size:9 final size:8
Alignment explanation
Indices: 78506517--78506612 Score: 79
Period size: 7 Copynumber: 13.1 Consensus size: 8
78506507 TTTATACGAT
78506517 AATTTAAA
1 AATTTAAA
78506525 AATTATAAA
1 AATT-TAAA
*
78506534 AATCTTCAA
1 AAT-TTAAA
78506543 AA---AAA
1 AATTTAAA
78506548 AA-TT-AA
1 AATTTAAA
78506554 AATTT-AA
1 AATTTAAA
78506561 AATTTAAA
1 AATTTAAA
*
78506569 AAATTAAA
1 AATTTAAA
78506577 AA-TTAAA
1 AATTTAAA
78506584 AA-TTAAA
1 AATTTAAA
78506591 AA-TTAAA
1 AATTTAAA
78506598 AA-TTAAA
1 AATTTAAA
78506605 AA-TTAAA
1 AATTTAAA
78506612 A
1 A
78506613 TATAAAATAT
Statistics
Matches: 79, Mismatches: 3, Indels: 13
0.83 0.03 0.14
Matches are distributed among these distances:
5 4 0.05
6 4 0.05
7 43 0.54
8 15 0.19
9 12 0.15
10 1 0.01
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (8 bp):
AATTTAAA
Found at i:78506560 original size:7 final size:7
Alignment explanation
Indices: 78506545--78506653 Score: 83
Period size: 7 Copynumber: 15.0 Consensus size: 7
78506535 ATCTTCAAAA
*
78506545 AAAAATT
1 AAAATTT
78506552 AAAATTT
1 AAAATTT
78506559 AAAATTT
1 AAAATTT
*
78506566 AAAAAATT
1 -AAAATTT
*
78506574 AAAAATT
1 AAAATTT
*
78506581 AAAAATT
1 AAAATTT
*
78506588 AAAAATT
1 AAAATTT
*
78506595 AAAAATT
1 AAAATTT
*
78506602 AAAAATT
1 AAAATTT
*
78506609 AAAATAT
1 AAAATTT
*
78506616 AAAATAT
1 AAAATTT
78506623 AAAATACTT
1 AAAAT--TT
78506632 AAATATTT
1 AAA-ATTT
*
78506640 AATATTT
1 AAAATTT
*
78506647 AATATTT
1 AAAATTT
78506654 TAATCCATAT
Statistics
Matches: 92, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
7 76 0.83
8 10 0.11
9 4 0.04
10 2 0.02
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (7 bp):
AAAATTT
Found at i:78506569 original size:21 final size:21
Alignment explanation
Indices: 78506545--78506612 Score: 109
Period size: 21 Copynumber: 3.2 Consensus size: 21
78506535 ATCTTCAAAA
* *
78506545 AAAAATTAAAATTTAAAATTT
1 AAAAATTAAAAATTAAAAATT
78506566 AAAAAATTAAAAATTAAAAATT
1 -AAAAATTAAAAATTAAAAATT
78506588 AAAAATTAAAAATTAAAAATT
1 AAAAATTAAAAATTAAAAATT
78506609 AAAA
1 AAAA
78506613 TATAAAATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
21 25 0.57
22 19 0.43
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (21 bp):
AAAAATTAAAAATTAAAAATT
Found at i:78506571 original size:36 final size:35
Alignment explanation
Indices: 78506517--78506627 Score: 120
Period size: 36 Copynumber: 3.1 Consensus size: 35
78506507 TTTATACGAT
*
78506517 AATTTAAAAATTATAAAAATCTTCAAAA-AAAAATTAA
1 AATTTAAAAATTA-AAAAA--TTAAAAATAAAAATTAA
*
78506554 AATTTAAAATTTAAAAAATTAAAAATTAAAAATTAA
1 AATTTAAAAATTAAAAAATTAAAAA-TAAAAATTAA
*
78506590 AAATTAAAAATT-AAAAATT-AAAATATAAAATATAA
1 AATTTAAAAATTAAAAAATTAAAAATA-AAAAT-TAA
78506625 AAT
1 AAT
78506628 ACTTAAATAT
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
33 2 0.03
34 15 0.23
35 12 0.18
36 24 0.37
37 12 0.18
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (35 bp):
AATTTAAAAATTAAAAAATTAAAAATAAAAATTAA
Found at i:78506618 original size:14 final size:15
Alignment explanation
Indices: 78506545--78506634 Score: 109
Period size: 14 Copynumber: 6.2 Consensus size: 15
78506535 ATCTTCAAAA
78506545 AAAAATTAAAAT-TT
1 AAAAATTAAAATATT
* *
78506559 AAAATTTAAAAAATT
1 AAAAATTAAAATATT
78506574 AAAAATTAAAA-ATT
1 AAAAATTAAAATATT
78506588 AAAAATTAAAA-ATT
1 AAAAATTAAAATATT
78506602 AAAAATTAAAATA-T
1 AAAAATTAAAATATT
78506616 -AAAATATAAAATACTT
1 AAAAAT-TAAAATA-TT
78506632 AAA
1 AAA
78506635 TATTTAATAT
Statistics
Matches: 67, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
13 5 0.07
14 46 0.69
15 13 0.19
16 1 0.01
17 2 0.03
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAATTAAAATATT
Found at i:78506626 original size:21 final size:22
Alignment explanation
Indices: 78506544--78506619 Score: 102
Period size: 21 Copynumber: 3.5 Consensus size: 22
78506534 AATCTTCAAA
* * *
78506544 AAAAAATTAAAATTTAAAATTT
1 AAAATATTAAAAATTAAAAATT
*
78506566 AAAAAATTAAAAATTAAAAATT
1 AAAATATTAAAAATTAAAAATT
78506588 AAAA-ATTAAAAATTAAAAATT
1 AAAATATTAAAAATTAAAAATT
78506609 AAAATA-TAAAA
1 AAAATATTAAAA
78506620 TATAAAATAC
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
21 26 0.51
22 25 0.49
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (22 bp):
AAAATATTAAAAATTAAAAATT
Found at i:78511670 original size:15 final size:15
Alignment explanation
Indices: 78511650--78511678 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
78511640 AATTCAATTT
78511650 ATAATTTGTTGCTAC
1 ATAATTTGTTGCTAC
78511665 ATAATTTGTTGCTA
1 ATAATTTGTTGCTA
78511679 ATATTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (15 bp):
ATAATTTGTTGCTAC
Found at i:78512461 original size:31 final size:32
Alignment explanation
Indices: 78512423--78512502 Score: 98
Period size: 31 Copynumber: 2.6 Consensus size: 32
78512413 TTGCTATATT
78512423 TTATTTATATTTATATTT-AATCTA-ATTTTTA
1 TTATTTAT-TTTATATTTGAATCTATATTTTTA
*
78512454 TTATTTATTTTAGT-TTTGATTCTATATTTTTA
1 TTATTTATTTTA-TATTTGAATCTATATTTTTA
78512486 TT-TTTATTTTA-ATTTGA
1 TTATTTATTTTATATTTGA
78512503 TAATGAATTT
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
30 12 0.27
31 23 0.52
32 9 0.20
ACGTcount: A:0.26, C:0.03, G:0.04, T:0.68
Consensus pattern (32 bp):
TTATTTATTTTATATTTGAATCTATATTTTTA
Found at i:78512470 original size:19 final size:19
Alignment explanation
Indices: 78512417--78512493 Score: 52
Period size: 19 Copynumber: 3.9 Consensus size: 19
78512407 AAAGACTTGC
*
78512417 TATA-TTTTATTTATATT-
1 TATATTTTTATTTTTATTA
78512434 TATATTTAATCTAATTTTTATTA
1 TATATTT--T-T-ATTTTTATTA
* * *
78512457 TTTA-TTTTAGTTTTGATTC
1 TATATTTTTA-TTTTTATTA
78512476 TATATTTTTATTTTTATT
1 TATATTTTTATTTTTATT
78512494 TTAATTTGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
17 4 0.09
18 3 0.07
19 18 0.39
20 7 0.15
21 1 0.02
22 10 0.22
23 3 0.07
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (19 bp):
TATATTTTTATTTTTATTA
Done.