Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 236 of 284
Found at i:78858832 original size:16 final size:17
Alignment explanation
Indices: 78858811--78858842 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
78858801 ACTATGGTAT
78858811 ATGAAAT-ATTGATATA
1 ATGAAATAATTGATATA
78858827 ATGAAATAATTGATAT
1 ATGAAATAATTGATAT
78858843 GTGTTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (17 bp):
ATGAAATAATTGATATA
Found at i:78860774 original size:40 final size:40
Alignment explanation
Indices: 78860719--78860865 Score: 188
Period size: 40 Copynumber: 3.7 Consensus size: 40
78860709 ATAACCACAA
* * *
78860719 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
78860759 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
78860799 GCACAAATGCCTTCGAGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
78860839 GCATAAATGCCTTCGGGACTTAGCCCG
1 GCACAAATGCCTTCGGGTCTTAGCCCG
78860866 ATTATGTAAT
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 92 0.96
41 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:78866832 original size:43 final size:43
Alignment explanation
Indices: 78866771--78866929 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
78866761 CAATACCGTA
* * * *
78866771 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAATG
* * * * *
78866814 TCCCAGACAGGGTCTTACACGAAATTGA-TTAACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAA-TCACATATCGATGCCAATG
* * *
78866857 TCCCAGACATGGTCTTATACGTAATCTCA-ATGCAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATAT-CGATGCCAATG
*
78866900 TCCCAGACATGGTCTTACATGTAATCACAT
1 TCCCAGACATGGTCTTACACGTAATCACAT
78866930 CTTGATAACC
Statistics
Matches: 92, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 2 0.02
43 88 0.96
44 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAATG
Found at i:78869282 original size:49 final size:50
Alignment explanation
Indices: 78869221--78869315 Score: 183
Period size: 50 Copynumber: 1.9 Consensus size: 50
78869211 AACCTTGACA
78869221 AAAAATAATAATTATAT-AAAATATATATAATATCACATTCATTCATGTC
1 AAAAATAATAATTATATAAAAATATATATAATATCACATTCATTCATGTC
78869270 AAAAATAATAATTATATAAAAATATATATAATATCACATTCATTCA
1 AAAAATAATAATTATATAAAAATATATATAATATCACATTCATTCA
78869316 CATACATTCC
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 17 0.38
50 28 0.62
ACGTcount: A:0.54, C:0.09, G:0.01, T:0.36
Consensus pattern (50 bp):
AAAAATAATAATTATATAAAAATATATATAATATCACATTCATTCATGTC
Found at i:78872738 original size:45 final size:45
Alignment explanation
Indices: 78872682--78872772 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
78872672 GAACTATGTG
*
78872682 ATCTGAACTCATTGAGTTGTGGTATGGGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTATGGTATGGGTTCATGATATATGTGAC
* *
78872727 ATCTGAACTCATTGAGTTATGGTCTGGGTTCATGATGTATGTGAC
1 ATCTGAACTCATTGAGTTATGGTATGGGTTCATGATATATGTGAC
78872772 A
1 A
78872773 CATGTTTTGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.37
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTATGGTATGGGTTCATGATATATGTGAC
Found at i:78875293 original size:55 final size:53
Alignment explanation
Indices: 78875150--78875357 Score: 204
Period size: 55 Copynumber: 3.8 Consensus size: 53
78875140 ATCCTTTTGA
* *
78875150 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * * * *
78875203 AACTCACCAATACCGTGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTCTAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G
* * ***
78875257 TAACTTATCAATGCAATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * *
78875310 AAGCCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA--CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
78875358 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 25, Indels: 12
0.77 0.16 0.08
Matches are distributed among these distances:
52 4 0.03
53 42 0.34
54 8 0.07
55 67 0.54
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:78881869 original size:16 final size:16
Alignment explanation
Indices: 78881850--78881880 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78881840 CTTCTTCACT
78881850 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
78881866 TACTTACTTACTTAA
1 TACTCACTTACTTAA
78881881 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:78881886 original size:20 final size:20
Alignment explanation
Indices: 78881847--78881886 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
78881837 AAACTTCTTC
* *
78881847 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
78881867 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
78881887 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:78882146 original size:49 final size:50
Alignment explanation
Indices: 78882070--78882218 Score: 174
Period size: 49 Copynumber: 2.9 Consensus size: 50
78882060 ATACGCGGGT
* * *
78882070 ACCTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTTTTGAA
1 ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTTAGAA
* * *
78882120 A-CTTACCATTGCCATGTCTTGACATGGTCTTACATGATTTCCTCGCCTTAGAA
1 ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCT----TTAGAA
* *
78882173 ACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCTTACC-ATTGCCATGACTTGACATGGTCTTACATGGTATCCTT
78882219 AAACCCTAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
49 37 0.45
50 1 0.01
51 1 0.01
53 6 0.07
54 6 0.07
55 32 0.39
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (50 bp):
ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTTAGAA
Found at i:78890043 original size:30 final size:30
Alignment explanation
Indices: 78890007--78890066 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
78889997 TCTTTTGTAT
*
78890007 ATATCGA-TCTGATCCTTCACATGTGATTAG
1 ATATCGATTC-GATCCTTCACACGTGATTAG
78890037 ATATCGATTCGATCCTTCACACGTGATTAG
1 ATATCGATTCGATCCTTCACACGTGATTAG
78890067 TCTGACTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 26 0.93
31 2 0.07
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.35
Consensus pattern (30 bp):
ATATCGATTCGATCCTTCACACGTGATTAG
Found at i:78898879 original size:26 final size:26
Alignment explanation
Indices: 78898849--78898915 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
78898839 GAAATTTTCT
78898849 TTTAATTTTATTTAAA-ACCATTAGTG
1 TTTAATTTTATTTAAAGACC-TTAGTG
** *
78898875 TTTAATTTTAGCTAAAGTCCTTAGTG
1 TTTAATTTTATTTAAAGACCTTAGTG
*
78898901 TTAAACTTTTATTTA
1 TTTAA-TTTTATTTA
78898916 GAACTAACTT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
26 24 0.73
27 9 0.27
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (26 bp):
TTTAATTTTATTTAAAGACCTTAGTG
Found at i:78900556 original size:2 final size:2
Alignment explanation
Indices: 78900549--78900574 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
78900539 AATTCTTCAA
78900549 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
78900575 TTGAAGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78906820 original size:12 final size:12
Alignment explanation
Indices: 78906803--78906844 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
78906793 TTAACTTAAT
78906803 CGAACATGTTCA
1 CGAACATGTTCA
**
78906815 CGAACAT-TAAA
1 CGAACATGTTCA
*
78906826 TGAACATGTTCA
1 CGAACATGTTCA
78906838 CGAACAT
1 CGAACAT
78906845 ATAATTGAAC
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
11 8 0.35
12 15 0.65
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.24
Consensus pattern (12 bp):
CGAACATGTTCA
Found at i:78906858 original size:24 final size:23
Alignment explanation
Indices: 78906798--78906861 Score: 101
Period size: 23 Copynumber: 2.7 Consensus size: 23
78906788 TTCATTTAAC
*
78906798 TTAATCGAACATGTTCACGAACA
1 TTAATTGAACATGTTCACGAACA
*
78906821 TTAAATGAACATGTTCACGAACA
1 TTAATTGAACATGTTCACGAACA
78906844 TATAATTGAACATGTTCA
1 T-TAATTGAACATGTTCA
78906862 TGAATAATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
23 22 0.59
24 15 0.41
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (23 bp):
TTAATTGAACATGTTCACGAACA
Found at i:78912611 original size:17 final size:17
Alignment explanation
Indices: 78912589--78912622 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
78912579 CCTAATAAGG
*
78912589 ATTCTATTAGTCTATTT
1 ATTCTATTACTCTATTT
78912606 ATTCTATTACTCTATTT
1 ATTCTATTACTCTATTT
78912623 GTTTAAAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.15, G:0.03, T:0.59
Consensus pattern (17 bp):
ATTCTATTACTCTATTT
Found at i:78924521 original size:48 final size:48
Alignment explanation
Indices: 78924453--78924785 Score: 232
Period size: 48 Copynumber: 6.9 Consensus size: 48
78924443 ACATTTGGTT
* *
78924453 GATATGTGCGCCAGTGTAAGACCATGTCTGGAACATGACATCGACCAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCGACCAC
* * * * * * *
78924501 GATACGAGAGCCTGTGTAAGACAATGTTTGGAACATGACATCGGCAAT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCGACCAC
* * * * *
78924549 G-TAATGAGAGACAGTGTAAGACCATGTCTGGGACATGGCATCG-GCATT
1 GAT-ATGAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCGACCA-C
* * * * * *
78924597 AATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCGACCAC
* * *
78924645 -ATTATGAGAGCCAGTGTAAGACCATGT-TTGAGACAT-ATCATTGGA--ATT
1 GA-TATGAGAGCCAGTGTAAGACCATGTCTGGA-ACATGA-CA-TCGACCA-C
* * * * * * * *
78924693 GAGACGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCGACCAC
* * *
78924741 GACATGTGAGCCAGTGTAAGACCATGTTTGGAACAT-AGCATCGAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGA-CATCGAC
78924786 AATTCACCCT
Statistics
Matches: 220, Mismatches: 50, Indels: 30
0.73 0.17 0.10
Matches are distributed among these distances:
47 8 0.04
48 203 0.92
49 9 0.04
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGACATCGACCAC
Found at i:78924633 original size:96 final size:96
Alignment explanation
Indices: 78924504--78924783 Score: 300
Period size: 96 Copynumber: 2.9 Consensus size: 96
78924494 CGACCACGAT
* * * *
78924504 ACGAGAGCCT-GTGTAAGACAATGTTTGGAACATGACATCGGCAATGTAATGAGAGACAGTGTAA
1 ACGAGAG-CTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAATGTAATGAGAGCCAGTGTAA
* * * *
78924568 GACCATGTCTGGGACATGGCATCGGCATTAAT
65 GACCATGTTTGGGACATAGCATCGGAATTAAG
* * * * *
78924600 ATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAT-T-ATGAGAGCCAGTGTA
1 ACGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCG-GCA-ATGTAATGAGAGCCAGTGTA
* * * *
78924663 AGACCATGTTTGAGACATATCATTGGAATTGAG
64 AGACCATGTTTGGGACATAGCATCGGAATTAAG
* *
78924696 ACGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC-CTCG-ACATGTGAGCCAGTGTA
1 ACGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAAT-GTA-ATGAGAGCCAGTGTA
*
78924759 AGACCATGTTTGGAACATAGCATCG
64 AGACCATGTTTGGGACATAGCATCG
78924784 ACAATTCACC
Statistics
Matches: 149, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
93 1 0.01
95 3 0.02
96 140 0.94
97 3 0.02
98 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (96 bp):
ACGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAATGTAATGAGAGCCAGTGTAAG
ACCATGTTTGGGACATAGCATCGGAATTAAG
Found at i:78924714 original size:144 final size:144
Alignment explanation
Indices: 78924454--78924785 Score: 424
Period size: 144 Copynumber: 2.3 Consensus size: 144
78924444 CATTTGGTTG
* *
78924454 ATATGTGCGCCAGTGTAAGACCATGTCTGGAACATGACATCGACCACGATACGAGAGCCTGTGTA
1 ATATGTGCGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACCACGATACGAGAGCCAGTGTA
*
78924519 AGACAATGTTTGGAACATGACATCGGCAATGTAATGAGAGACAGTGTAAGACCATGTCTGGGACA
66 AGACAATGTTTGGAACATGACATCGGCAATGTAACGAGAGACAGTGTAAGACCATGTCTGGGACA
*
78924584 TGGCATCGGCATTA
131 TGGCATCGGCATCA
* * *
78924598 ATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAC-ATTATGAGAGCCAGTGT
1 ATATGTGCGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACCACGA-TACGAGAGCCAGTGT
* * *
78924662 AAGACCATGTTT-GAGACAT-ATCATTGG-AAT-TGAGACGAGAG-CTAGTGTAAGACCATGTTT
65 AAGACAATGTTTGGA-ACATGA-CATCGGCAATGT-A-ACGAGAGAC-AGTGTAAGACCATGTCT
* *
78924722 GGGACATGGCATCGGCCTCG
125 GGGACATGGCATCGGCATCA
* * * *
78924742 ACATGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGAC
1 ATATGTGCGCCAGTGTAAGACCATGTCTGGAACATGGCATCGAC
78924786 AATTCACCCT
Statistics
Matches: 164, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
142 1 0.01
143 9 0.05
144 154 0.94
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (144 bp):
ATATGTGCGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACCACGATACGAGAGCCAGTGTA
AGACAATGTTTGGAACATGACATCGGCAATGTAACGAGAGACAGTGTAAGACCATGTCTGGGACA
TGGCATCGGCATCA
Found at i:78925452 original size:30 final size:30
Alignment explanation
Indices: 78925395--78925452 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
78925385 TTTGATGCAA
* *
78925395 ATGTCTTATGGTTGTGGTTGTTCTGGTTAT
1 ATGTCTTATGCTTGTGATTGTTCTGGTTAT
*
78925425 ATGTCTTATGCTTG-GATTGGTTTTGGTT
1 ATGTCTTATGCTTGTGATT-GTTCTGGTT
78925453 GATGTTGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.10, C:0.07, G:0.29, T:0.53
Consensus pattern (30 bp):
ATGTCTTATGCTTGTGATTGTTCTGGTTAT
Found at i:78934090 original size:19 final size:20
Alignment explanation
Indices: 78934066--78934114 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
78934056 GAAATTCCCT
*
78934066 ATTATGATTTG-AGAAAATC
1 ATTATGATTTGTACAAAATC
* *
78934085 ATTATGAATTGTACAAAATG
1 ATTATGATTTGTACAAAATC
*
78934105 GTTATGATTT
1 ATTATGATTT
78934115 ATAATTTATA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.41
Consensus pattern (20 bp):
ATTATGATTTGTACAAAATC
Found at i:78941492 original size:40 final size:40
Alignment explanation
Indices: 78941404--78941481 Score: 106
Period size: 40 Copynumber: 1.9 Consensus size: 40
78941394 ATTATGTTTG
*
78941404 GCACTTAGTGTGCGTATTGAGATATCTTCAGCTATATAAA
1 GCACTTAGTGTGCGTATTGAGATAGCTTCAGCTATATAAA
*
78941444 GCACTTAGTGTGCG-ATTCG-GATTAGCTTCAGTTATATA
1 GCACTTAGTGTGCGTATT-GAGA-TAGCTTCAGCTATATA
78941482 CGACACTTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
39 5 0.15
40 29 0.85
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (40 bp):
GCACTTAGTGTGCGTATTGAGATAGCTTCAGCTATATAAA
Found at i:78951725 original size:37 final size:37
Alignment explanation
Indices: 78951666--78951771 Score: 185
Period size: 37 Copynumber: 2.9 Consensus size: 37
78951656 AGCTCAGACG
* *
78951666 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
78951703 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
78951740 TAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
78951772 AGAATATATT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:78951974 original size:48 final size:48
Alignment explanation
Indices: 78951921--78952074 Score: 238
Period size: 48 Copynumber: 3.2 Consensus size: 48
78951911 GCACATCGCC
78951921 TACATATTTTACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTTACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
78951969 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTTACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
78952017 TATATATATTT-CACATTGACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATAT-TTTACAC-TAG-CCATTCGGCTTTACCACATATACATATCTCA
78952067 TACATATT
1 TACATATT
78952075 GTAATATCCC
Statistics
Matches: 97, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
48 56 0.58
49 5 0.05
50 36 0.37
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTTACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:78952047 original size:50 final size:50
Alignment explanation
Indices: 78951924--78952073 Score: 225
Period size: 50 Copynumber: 3.0 Consensus size: 50
78951914 CATCGCCTAC
* *
78951924 ATATTTTACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
78951972 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* * *
78952022 ATATTTCACA-TTGACCATTCGGCTTTACCACATATGCATATCTCATACAT
1 ATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
78952072 AT
1 AT
78952074 TGTAATATCC
Statistics
Matches: 94, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
48 43 0.46
49 2 0.02
50 49 0.52
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (50 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:78953024 original size:46 final size:47
Alignment explanation
Indices: 78952898--78953026 Score: 206
Period size: 47 Copynumber: 2.8 Consensus size: 47
78952888 GGTTGAGCAT
* *
78952898 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
78952945 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-C
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
* * *
78952991 CCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78953027 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 33 0.43
47 44 0.57
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
Found at i:78954397 original size:34 final size:34
Alignment explanation
Indices: 78954354--78954694 Score: 682
Period size: 34 Copynumber: 10.0 Consensus size: 34
78954344 AGCCATTCGG
78954354 CTTTACCACATATACATATCTCATACATATTTCA
1 CTTTACCACATATACATATCTCATACATATTTCA
78954388 CTTTACCACATATACATATCTCATACATATTTCA
1 CTTTACCACATATACATATCTCATACATATTTCA
78954422 CTTTACCACATATACATATCTCATACATATTTCA
1 CTTTACCACATATACATATCTCATACATATTTCA
78954456 CTTTACCACATATACATATCTCATACATATTTCA
1 CTTTACCACATATACATATCTCATACATATTTCA
78954490 CTTTACCACATATACATATCTCATACATATTTCA
1 CTTTACCACATATACATATCTCATACATATTTCA
78954524 CTTTACCACATATACATATCTCATACATATTTCA
1 CTTTACCACATATACATATCTCATACATATTTCA
78954558 CTTTACCACATATACATATCTCATACATATTTCA
1 CTTTACCACATATACATATCTCATACATATTTCA
78954592 CTTTACCACATATACATATCTCATACATATTTCA
1 CTTTACCACATATACATATCTCATACATATTTCA
78954626 CTTTACCACATATACATATCTCATACATATTTCA
1 CTTTACCACATATACATATCTCATACATATTTCA
78954660 CTTTACCACATATACATATCTCATACATATTTCA
1 CTTTACCACATATACATATCTCATACATATTTCA
78954694 C
1 C
78954695 ATTAGCCATT
Statistics
Matches: 307, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 307 1.00
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.38
Consensus pattern (34 bp):
CTTTACCACATATACATATCTCATACATATTTCA
Found at i:78956977 original size:12 final size:12
Alignment explanation
Indices: 78956960--78956986 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
78956950 ATTCCGAAGT
78956960 ATATATATATAC
1 ATATATATATAC
78956972 ATATATATATAC
1 ATATATATATAC
78956984 ATA
1 ATA
78956987 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:78959583 original size:51 final size:49
Alignment explanation
Indices: 78959408--78959639 Score: 229
Period size: 49 Copynumber: 4.7 Consensus size: 49
78959398 CTGGTACGCA
* * * ** *
78959408 TAGTAGTCTACACTTAGTACTACACATGAAACCAACT-ATCCG-GTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAA-TAAT-CGAGTACACG
***
78959457 TAGTAGCCTGCACTTAGTACTACACACGTGACCTACCCATCTGA-TACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATAATC-GAGTACACG
* * * *
78959507 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TAATCGAGTACACG
* *
78959558 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCG-GTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATAAT-CGAGTACACG
*
78959607 TAGTAGCCTGAACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
78959640 TCACAATAGA
Statistics
Matches: 152, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 67 0.44
50 48 0.32
51 37 0.24
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCGAGTACACG
Found at i:78959627 original size:100 final size:101
Alignment explanation
Indices: 78959457--78959637 Score: 283
Period size: 100 Copynumber: 1.8 Consensus size: 101
78959447 CCGGTACATG
* * * * *
78959457 TAGTAGCCTGCACTTAGTACTACACACGTGACCTACCCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCCGATACACGTAGTAGCCTGAACTT
78959522 AGTACTACACACGTGATCAAAGTTATCGAGTACGCA
66 AGTACTACACACGTGATCAAAGTTATCGAGTACGCA
* * *
78959558 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATAATCCGGTACACGTAGTAGCCTGAACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCCGATACACGTAGTAGCCTGAACTT
78959622 AGTACTACACACGTGA
66 AGTACTACACACGTGA
78959638 CCTCACAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 41 0.57
101 31 0.43
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCCGATACACGTAGTAGCCTGAACTT
AGTACTACACACGTGATCAAAGTTATCGAGTACGCA
Found at i:78962369 original size:81 final size:81
Alignment explanation
Indices: 78962276--78962429 Score: 263
Period size: 81 Copynumber: 1.9 Consensus size: 81
78962266 GTTTCGCGGA
* *
78962276 TCAGCAGCTCTAACTACTCTTCACTAAAATTTAATTATATTTTGATACCAAATTCAAATGAGGTT
1 TCAGCAGCTCTAACCACTCTTCACTAAAATTTAATTATATTTTGATACCAAATTCAAATAAGGTT
*
78962341 CTTGTTTCTTTATTGT
66 CTCGTTTCTTTATTGT
* *
78962357 TCAGCAGCTCTAACCACTCTTCACTAAAATTTAATTATCTTTTGCTACCAAATTCAAATAAGGTT
1 TCAGCAGCTCTAACCACTCTTCACTAAAATTTAATTATATTTTGATACCAAATTCAAATAAGGTT
78962422 CTCGTTTC
66 CTCGTTTC
78962430 ATTCTTCTGA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (81 bp):
TCAGCAGCTCTAACCACTCTTCACTAAAATTTAATTATATTTTGATACCAAATTCAAATAAGGTT
CTCGTTTCTTTATTGT
Found at i:78963122 original size:38 final size:38
Alignment explanation
Indices: 78963071--78963276 Score: 133
Period size: 38 Copynumber: 4.9 Consensus size: 38
78963061 TTTCAAATTA
*
78963071 ACATGTATAACCGTGGCATATCCACTTAGCACCATGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * *
78963109 ACATGTTTAACCGTGGTATATCCACTTATCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
78963150 GAATCGATATATGTAACCGTGGCATATCCACTAAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
78963194 GCATGTTTCAATATGTGTAATCGTGGTATATCCACTTAGCACCACGTT
1 --A-----C---ATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * *
78963242 ACACGTATAACCATGGTATATCCACTTAGCACCAC
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC
78963277 TTTTTTCCAT
Statistics
Matches: 133, Mismatches: 20, Indels: 30
0.73 0.11 0.16
Matches are distributed among these distances:
38 61 0.46
39 1 0.01
41 2 0.02
43 1 0.01
44 4 0.03
45 3 0.02
46 2 0.02
47 26 0.20
48 30 0.23
50 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:78963228 original size:48 final size:47
Alignment explanation
Indices: 78963111--78963242 Score: 165
Period size: 48 Copynumber: 2.8 Consensus size: 47
78963101 ACCATGTTAC
* * *
78963111 ATGTTTAACCGTGGTATATCCACTTATCACCACGTTAATGAATCGAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAAT
* * * * **
78963158 ATATGTAACCGTGGCATATCCACTAAGCACCACGTTGCATGTTTCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTT-AATGAATCAAT
*
78963206 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTA
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTA
78963243 CACGTATAAC
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
47 31 0.44
48 39 0.56
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (47 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAAT
Found at i:78966232 original size:43 final size:42
Alignment explanation
Indices: 78966067--78966235 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 42
78966057 ATAAAGCTCG
* * *
78966067 TACAATGCCATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCATTTCCCAGACATGGTCTTACATGTAATCACAA
* * * * * * *
78966108 TATCGATG-CACTGTCCTAGATAGGGTCTTACACGGAATCA-AA
1 TA-CAATGCCA-TTTCCCAGACATGGTCTTACATGTAATCACAA
* * **
78966150 TAACAATGCCAATGTCCCAAACATGGTCTTACAAATAATCACAA
1 T-ACAATGCC-ATTTCCCAGACATGGTCTTACATGTAATCACAA
*
78966194 TACAATGCCAATTTTCCAGACATGGTCTTACATGTAATCACA
1 TACAATGCC-ATTTCCCAGACATGGTCTTACATGTAATCACA
78966236 TCTCATTAAC
Statistics
Matches: 101, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 4 0.04
42 33 0.33
43 60 0.59
44 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.28
Consensus pattern (42 bp):
TACAATGCCATTTCCCAGACATGGTCTTACATGTAATCACAA
Found at i:78982344 original size:39 final size:39
Alignment explanation
Indices: 78982180--78982362 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
78982170 TTGAATGCTG
* * * * * * *
78982180 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
78982220 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
78982260 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
78982300 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
78982339 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
78982363 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:78982382 original size:79 final size:80
Alignment explanation
Indices: 78982216--78982397 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
78982206 GCTAAGTGAA
* * * *
78982216 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
78982280 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
78982296 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
78982360 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
78982375 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
78982398 TACGTGATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 50 0.60
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:78987217 original size:43 final size:43
Alignment explanation
Indices: 78987107--78987386 Score: 298
Period size: 43 Copynumber: 6.6 Consensus size: 43
78987097 ATCTCAGACA
** * * *
78987107 TGGTCTTACATGTAGTCACAAATCAATGCC-ACTGTCCCAAA--
1 TGGTCTTACACATAATCACATATCGATGCCAAC-GTCCCAAACG
* *
78987148 -GGTCTTACACATTATCACATATCGATGCCAACGTCCCAAATG
1 TGGTCTTACACATAATCACATATCGATGCCAACGTCCCAAACG
* * * * *
78987190 TGGTATTAAACATAATCACATATCGATGCCAATGTCTCAGACG
1 TGGTCTTACACATAATCACATATCGATGCCAACGTCCCAAACG
* * ** * *
78987233 TGGTCTTACACATAGTCACATATCAATGCCAACGTTTCAGATG
1 TGGTCTTACACATAATCACATATCGATGCCAACGTCCCAAACG
* *
78987276 TGGTCTTACACCTAATCATATATCGATGCCAACGTCCCAAACG
1 TGGTCTTACACATAATCACATATCGATGCCAACGTCCCAAACG
* * *
78987319 TGGTCTTACACAAAATCACATATCGATGCCAACGTCCCAGACA
1 TGGTCTTACACATAATCACATATCGATGCCAACGTCCCAAACG
* *
78987362 TGGCCTTACACGTAATCACATATCG
1 TGGTCTTACACATAATCACATATCG
78987387 TTTTAACCAT
Statistics
Matches: 199, Mismatches: 36, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.16
41 2 0.01
43 166 0.83
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (43 bp):
TGGTCTTACACATAATCACATATCGATGCCAACGTCCCAAACG
Found at i:78987336 original size:129 final size:126
Alignment explanation
Indices: 78987093--78987385 Score: 372
Period size: 129 Copynumber: 2.3 Consensus size: 126
78987083 CGTACAATGT
* * *
78987093 CAACATCTCAGACATGGTCTTACATGTAGTCACAAATCAATGCCACTGTCCCAAAGGTCTTACAC
1 CAACGTCTCAGACATGGTCTTACACGTAGTCACATATCAATGCCACTGTCCCAAAGGTCTTACAC
* * *
78987158 ATTATCACATATCGATGCCAACGTCCCAAATGTGGTATTAAACATAATCACATATCGATGC
66 ATAATCACATATCGATGCCAACGTCCCAAACGTGGTATTAAACAAAATCACATATCGATGC
* * * ** *
78987219 CAATGTCTCAGACGTGGTCTTACACATAGTCACATATCAATGCCAAC-GTTTCAGATGTGGTCTT
1 CAACGTCTCAGACATGGTCTTACACGTAGTCACATATCAATGCC-ACTGTCCCA-A--AGGTCTT
* * * *
78987283 ACACCTAATCATATATCGATGCCAACGTCCCAAACGTGGTCTTACACAAAATCACATATCGATGC
62 ACACATAATCACATATCGATGCCAACGTCCCAAACGTGGTATTAAACAAAATCACATATCGATGC
* * *
78987348 CAACGTCCCAGACATGGCCTTACACGTAATCACATATC
1 CAACGTCTCAGACATGGTCTTACACGTAGTCACATATC
78987386 GTTTTAACCA
Statistics
Matches: 141, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
126 42 0.30
127 3 0.02
129 96 0.68
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.26
Consensus pattern (126 bp):
CAACGTCTCAGACATGGTCTTACACGTAGTCACATATCAATGCCACTGTCCCAAAGGTCTTACAC
ATAATCACATATCGATGCCAACGTCCCAAACGTGGTATTAAACAAAATCACATATCGATGC
Found at i:79003589 original size:47 final size:49
Alignment explanation
Indices: 79003522--79003785 Score: 250
Period size: 47 Copynumber: 5.6 Consensus size: 49
79003512 AGTAAGGTGT
*
79003522 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
* * *
79003569 CGATGCCATATCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
* * * * * *
79003617 TGATG-CATGTCCCAGACAT-GTTTTACACTAGCTTA-CGTCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
* * * * *
79003663 CGATG-CATGTCCCAGACAT-GTCTTAGACTAGCAC-TCGTCTCGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
* *
79003709 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAAT-G-TGTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCGAAG-C
*
79003757 TGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
79003786 AGCACTCAAT
Statistics
Matches: 185, Mismatches: 24, Indels: 17
0.82 0.11 0.08
Matches are distributed among these distances:
46 75 0.41
47 82 0.44
48 27 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
Found at i:79008828 original size:42 final size:42
Alignment explanation
Indices: 79008782--79008908 Score: 128
Period size: 42 Copynumber: 2.9 Consensus size: 42
79008772 GATACGGGAC
* *
79008782 CTCATATCGATGCCATGTCCCAGACATGGTCTTACACGAAAT
1 CTCATATCGATGCCATATCCCAGATATGGTCTTACACGAAAT
* ** * *
79008824 CTCATATCAACACCACATCCCAGATATGGTCTTACATGAAAT
1 CTCATATCGATGCCATATCCCAGATATGGTCTTACACGAAAT
*
79008866 CACATACTGAGGTCGATGCCATATCCCAGATATGGTCTTACAC
1 CTC--A-T-A--TCGATGCCATATCCCAGATATGGTCTTACAC
79008909 TCACACACAT
Statistics
Matches: 66, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 37 0.56
44 1 0.02
45 1 0.02
46 1 0.02
48 26 0.39
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (42 bp):
CTCATATCGATGCCATATCCCAGATATGGTCTTACACGAAAT
Found at i:79008918 original size:48 final size:48
Alignment explanation
Indices: 79008789--79008957 Score: 149
Period size: 48 Copynumber: 3.6 Consensus size: 48
79008779 GACCTCATAT
* * * *
79008789 CGATGCCATGTCCCAGACATGGTCTTACAC-GAAATCTCATATC-A-A
1 CGATGCCATATCCCAGATATGGTCTTACACTCAAATCACATATCAATA
* * * *
79008834 C-A--CCACATCCCAGATATGGTCTTACA-TGAAATCACATACTGAGGT-
1 CGATGCCATATCCCAGATATGGTCTTACACTCAAATCACATA-TCA-ATA
*
79008879 CGATGCCATATCCCAGATATGGTCTTACACTCACA-CACATATCAATA
1 CGATGCCATATCCCAGATATGGTCTTACACTCAAATCACATATCAATA
**
79008926 CCGATGCCATATCCCAGACGTGGTCTTACACT
1 -CGATGCCATATCCCAGATATGGTCTTACACT
79008958 GGCTCTCATA
Statistics
Matches: 100, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
42 31 0.31
43 1 0.01
44 1 0.01
45 2 0.02
46 2 0.02
47 2 0.02
48 58 0.58
49 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.25
Consensus pattern (48 bp):
CGATGCCATATCCCAGATATGGTCTTACACTCAAATCACATATCAATA
Found at i:79008968 original size:48 final size:48
Alignment explanation
Indices: 79008879--79009015 Score: 175
Period size: 48 Copynumber: 2.9 Consensus size: 48
79008869 ATACTGAGGT
* ** * *
79008879 CGATGCCATATCCCAGATATGGTCTTACACTCACACACATATCAATAC
1 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATATCAATAC
* * *
79008927 CGATGCCATATCCCAGACGTGGTCTTACACTGGCTCTCATATCCATGC
1 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATATCAATAC
* * *
79008975 CGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATA
1 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATA
79009016 AATCATGGTG
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 77 1.00
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.27
Consensus pattern (48 bp):
CGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATATCAATAC
Found at i:79015121 original size:30 final size:30
Alignment explanation
Indices: 79015087--79015147 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79015077 TCCTTAAATC
79015087 AAACTTTGGAAAAATTACAATTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTTCCCCT
* * * * *
79015117 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTTCCCCT
79015147 A
1 A
79015148 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTTCCCCT
Found at i:79016411 original size:37 final size:37
Alignment explanation
Indices: 79016356--79016432 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
79016346 TAGGATTATC
*
79016356 TTTGATATGATCAAAGTTTGTACGAGCTTACTAAGCA
1 TTTGATATGATCAAAGTTTATACGAGCTTACTAAGCA
*
79016393 TTTGTTATGATCAAAGTTTATACGAGCTTACTAAGCA
1 TTTGATATGATCAAAGTTTATACGAGCTTACTAAGCA
79016430 TTT
1 TTT
79016433 ATTGCTGACG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (37 bp):
TTTGATATGATCAAAGTTTATACGAGCTTACTAAGCA
Found at i:79016468 original size:40 final size:40
Alignment explanation
Indices: 79016408--79016493 Score: 136
Period size: 40 Copynumber: 2.1 Consensus size: 40
79016398 TATGATCAAA
*
79016408 GTTTATACGAGCTTACTAAGCATTTATTGCTGACGTAGTT
1 GTTTTTACGAGCTTACTAAGCATTTATTGCTGACGTAGTT
* **
79016448 GTTTTTACGAGCTTACTAAGCATTTATTTCTTTCGTAGTT
1 GTTTTTACGAGCTTACTAAGCATTTATTGCTGACGTAGTT
79016488 GTTTTT
1 GTTTTT
79016494 CCTTTACTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.21, C:0.14, G:0.17, T:0.48
Consensus pattern (40 bp):
GTTTTTACGAGCTTACTAAGCATTTATTGCTGACGTAGTT
Found at i:79020776 original size:6 final size:6
Alignment explanation
Indices: 79020756--79020793 Score: 58
Period size: 6 Copynumber: 6.0 Consensus size: 6
79020746 AAACTAATTT
79020756 AATATAA AATAAAA AATAAA AATAAA AATAAA AATAAA
1 AATA-AA AAT-AAA AATAAA AATAAA AATAAA AATAAA
79020794 TAAAATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 21 0.70
7 8 0.27
8 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:79020776 original size:12 final size:12
Alignment explanation
Indices: 79020759--79020806 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
79020749 CTAATTTAAT
79020759 ATAAAATAAAAA
1 ATAAAATAAAAA
79020771 ATAAAA-ATAAAA
1 ATAAAATA-AAAA
79020783 ATAAAAATAAATAAA
1 AT-AAAAT-AA-AAA
79020798 ATAAAATAA
1 ATAAAATAA
79020807 GATCTTTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
11 1 0.03
12 12 0.39
13 6 0.19
14 6 0.19
15 6 0.19
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (12 bp):
ATAAAATAAAAA
Found at i:79021054 original size:14 final size:14
Alignment explanation
Indices: 79021035--79021062 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79021025 TCATTACTCG
79021035 ACCTATCTTTTCTT
1 ACCTATCTTTTCTT
79021049 ACCTATCTTTTCTT
1 ACCTATCTTTTCTT
79021063 CTTGGGTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57
Consensus pattern (14 bp):
ACCTATCTTTTCTT
Found at i:79025682 original size:44 final size:44
Alignment explanation
Indices: 79025653--79025774 Score: 154
Period size: 44 Copynumber: 2.8 Consensus size: 44
79025643 CCTTTATTTT
*
79025653 AATCCACTCCACTGTAATCTCAAGCAGATAGGATTACTATCTTC
1 AATCCACTCCACTGTAATCTCAAGCAGATAAGATTACTATCTTC
* * * *
79025697 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTATCTTC
1 AATCCACTCCACTGTAATCTCAAGCAGATAAGATTACTATCTTC
** * * *
79025741 AATCTGCCCCATTGTAATCTCAAGGAGATAAGAT
1 AATCCACTCCACTGTAATCTCAAGCAGATAAGAT
79025775 CTGAAATTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 68 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (44 bp):
AATCCACTCCACTGTAATCTCAAGCAGATAAGATTACTATCTTC
Found at i:79025814 original size:46 final size:46
Alignment explanation
Indices: 79025753--79026512 Score: 1511
Period size: 46 Copynumber: 16.5 Consensus size: 46
79025743 TCTGCCCCAT
*
79025753 TGTAATCTCAAGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79025799 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79025845 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79025891 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79025937 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79025983 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79026029 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79026075 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79026121 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79026167 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79026213 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79026259 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79026305 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79026351 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79026397 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79026443 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
1 TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
79026489 TGTAATCTCAGGGAGATAAGATCT
1 TGTAATCTCAGGGAGATAAGATCT
79026513 CTGGCTTCAA
Statistics
Matches: 713, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 713 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (46 bp):
TGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGTTCCAC
Found at i:79027008 original size:263 final size:259
Alignment explanation
Indices: 79026581--79027131 Score: 788
Period size: 263 Copynumber: 2.1 Consensus size: 259
79026571 TTTTAATCCG
* *
79026581 CTCCACTGTAA-CTTCAGAGAGATAGGAT-TACTAGCTTCAATCTACTCCGCTGTAATCTCAGAG
1 CTCCGCTGTAATC-TCAGAGAGATAAGATCTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAG
*
79026644 AGATAAAATCTTTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTC
65 AGATAAAATCTTTGGCCTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTC
* * ** *
79026709 GGTCTACTCCCCTGTAACCTCAGGGTGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGA
130 AGTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
*
79026774 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGAGAGATAGGATTACTAGCTTC
195 GAGATAAGATCC-----TTTAATCCGCTCCACTGTAATC-TCAGAGAGATAGGATTACTAGATTC
79026838 AATCTA
254 AATCTA
* * *
79026844 CTCCGCTGTAATCTCAGAGAGATAAGATCT-CTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 CTCCGCTGTAATCTCAGAGAGATAAGATCTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGA
* *
79026908 GATAAGAT-TTCTGGCCTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTT
66 GATAAAATCTT-TGGCCTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTC
** * * *
79026972 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGA
130 AGTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
* * *
79027037 GAGATAAGATCCTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTG
195 GAGATAAGATCCTTTAATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAGATTCAATCTA
*
79027102 CTCCGCTGTAATCTCAGGGAGATAAGATCT
1 CTCCGCTGTAATCTCAGAGAGATAAGATCT
79027132 GCAATTCTTT
Statistics
Matches: 261, Mismatches: 23, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
258 76 0.29
259 1 0.00
262 2 0.01
263 180 0.69
264 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (259 bp):
CTCCGCTGTAATCTCAGAGAGATAAGATCTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGA
GATAAAATCTTTGGCCTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCA
GTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
AGATAAGATCCTTTAATCCGCTCCACTGTAATCTCAGAGAGATAGGATTACTAGATTCAATCTA
Found at i:79027029 original size:219 final size:216
Alignment explanation
Indices: 79026524--79027129 Score: 631
Period size: 219 Copynumber: 2.8 Consensus size: 216
79026514 TGGCTTCAAT
* * * * **
79026524 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCCACTGTAACTTCAGAGAAATAAGATCC-TTAGTGCAATCCGCTCCACTG
*
79026589 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAAATC
65 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
* * * * * **
79026654 TTTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA-TCTGAAATTCTTCGGTCTACTC
130 TCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCTG--A-GCCTCAATCTACTC
* *
79026718 CCCTGTAACCTCAGGGTGATAAGAC
192 CACTGTAACCTCAGGGAGATAAGAC
** * * **
79026743 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCCACTGTAACTTCAGAGAAATAAGATCC-TTAGTGCAATCCGCTCCACTG
79026808 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
65 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATC
*
79026873 TCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTG-GCCTCAATCTGCTCCA
130 TCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA-TTCTGAGCCTCAATCTACTCCA
*
79026937 CTGTAACCTCAGGGAGATAAGAT
194 CTGTAACCTCAGGGAGATAAGAC
* * ** * * * *
79026960 CTGAAATTCTTTAGTCTGTTCCACTGTAA-TCTCAGGGAAATAAGA-CC-TGGTGCGATCTGCTC
1 CTG--ATGC--GA-TCTACTCCACTGTAACT-TCAGAGAAATAAGATCCTTAGTGCAATCCGCTC
* * * ** * *
79027022 TACTGTAACTTCAGAGAGATAAGA-T-C---CTTTAATCCGCTCCACTGTAATCTCAGGGAGATA
60 CACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATA
* ***
79027082 GGAT-TACTATATTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
125 AGATCT-CTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
79027130 CTGCAATTCT
Statistics
Matches: 339, Mismatches: 39, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
213 2 0.01
214 70 0.21
217 35 0.10
218 1 0.00
219 200 0.59
221 8 0.02
222 23 0.07
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (216 bp):
CTGATGCGATCTACTCCACTGTAACTTCAGAGAAATAAGATCCTTAGTGCAATCCGCTCCACTGT
AACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCT
CTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCTGAGCCTCAATCTACTCCACT
GTAACCTCAGGGAGATAAGAC
Found at i:79027080 original size:170 final size:173
Alignment explanation
Indices: 79026849--79027177 Score: 477
Period size: 170 Copynumber: 1.9 Consensus size: 173
79026839 ATCTACTCCG
* *
79026849 CTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGAGAGATAAGATCTCT-G-TTCAATCCGCTCCACTGTAATCTCAGGGAGATAAG
* * *
79026914 ATTTCTGGCCTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTAGTCTGT
64 ATTACTAGACTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTAGTCTGT
*
79026979 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTA
129 TCCACCGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTA
*
79027024 CTGTAA-CTTCAGAGAGATAAGATC-CT-TT-AATCCGCTCCACTGTAATCTCAGGGAGATAGGA
1 CTGTAATC-TCAGAGAGATAAGATCTCTGTTCAATCCGCTCCACTGTAATCTCAGGGAGATAAGA
* * * * * *
79027085 TTACTATATTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTTGGTCTGTT
65 TTACTAGACTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTAGTCTGTT
*
79027150 CCACCGTAATCTCAGGGGAATAAGACCT
130 CCACCGTAATCTCAGGGAAATAAGACCT
79027178 TTTATAATGA
Statistics
Matches: 139, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
170 112 0.81
171 2 0.01
174 3 0.02
175 22 0.16
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (173 bp):
CTGTAATCTCAGAGAGATAAGATCTCTGTTCAATCCGCTCCACTGTAATCTCAGGGAGATAAGAT
TACTAGACTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTAGTCTGTTC
CACCGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTA
Found at i:79027120 original size:44 final size:43
Alignment explanation
Indices: 79026575--79027129 Score: 321
Period size: 44 Copynumber: 12.8 Consensus size: 43
79026565 CCTTTATTTT
* * *
79026575 AATCCGCTCCACTGTAA-CTTCAGAGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATT-CTAGCTTC
* * * * * *
79026619 AATCTACTCCGCTGTAATCTCAGAGAGATAAAATCTTTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TCTAGCTTC
* *
79026663 AATCTGCTCCACTGTAACCTCAGGGAGATAAGA-TCTGAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCT---A-GCTTC
** * * * * * * *
79026709 GGTCTACTCCCCTGTAACCTCAGGGTGATAAGA-CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCTAGCTTC
* * ** * * * *
79026750 GATCTACTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTTA-TTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT--TCTAGCTTC
* * *
79026794 AATCCGCTCCACTGTAA-CTTCAGAGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATT-CTAGCTTC
* * * *
79026838 AATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TCTAGCTTC
* * *
79026882 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCCTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TTCTAGCTTC
* * *
79026926 AATCTGCTCCACTGTAACCTCAGGGAGATAAGA-TCTGAAATTCTTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCT---A-GCTTC
* * * * * *
79026972 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGA-CCT-GGTGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCTAGCTTC
* * * *
79027013 GATCTGCTCTACTGTAA-CTTCAGAGAGATAAGA-TC---CTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTCTAGCTTC
* * **
79027052 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT-CTAGCTTC
*
79027096 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT
79027130 CTGCAATTCT
Statistics
Matches: 398, Mismatches: 86, Indels: 54
0.74 0.16 0.10
Matches are distributed among these distances:
39 27 0.07
40 4 0.01
41 56 0.14
42 6 0.02
43 2 0.01
44 231 0.58
45 5 0.01
46 67 0.17
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCTAGCTTC
Found at i:79038773 original size:11 final size:12
Alignment explanation
Indices: 79038753--79038790 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
79038743 AGAAAAAAAA
79038753 GAAGAGAGAGAGG
1 GAAGAGAGA-AGG
79038766 GAAGAGAGAAGG
1 GAAGAGAGAAGG
79038778 G-AGAGAGAAGG
1 GAAGAGAGAAGG
79038789 GA
1 GA
79038791 GGGGGAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.46
12 4 0.17
13 9 0.38
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:79039295 original size:8 final size:8
Alignment explanation
Indices: 79039282--79039306 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
79039272 GGTGTTCGGC
79039282 GCAAGTGG
1 GCAAGTGG
79039290 GCAAGTGG
1 GCAAGTGG
79039298 GCAAGTGG
1 GCAAGTGG
79039306 G
1 G
79039307 GGGTAGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (8 bp):
GCAAGTGG
Found at i:79044868 original size:24 final size:24
Alignment explanation
Indices: 79044815--79044874 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
79044805 CTTGTAGGTC
* * *
79044815 AAATAAATTATGCTAATAAATAAT
1 AAATATATTATACCAATAAATAAT
* *
79044839 AAATATATTATACCAATAAGTACT
1 AAATATATTATACCAATAAATAAT
*
79044863 AAATATTTTATA
1 AAATATATTATA
79044875 AAAAATATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (24 bp):
AAATATATTATACCAATAAATAAT
Found at i:79061338 original size:40 final size:40
Alignment explanation
Indices: 79061282--79061365 Score: 141
Period size: 40 Copynumber: 2.1 Consensus size: 40
79061272 AAATTCATTG
* * *
79061282 GCACTTGGCCTGCGAGGTATAAAACCCGAACATAACACTA
1 GCACTTGGCCTACGAGGTATAAAACCCAAACATAACACCA
79061322 GCACTTGGCCTACGAGGTATAAAACCCAAACATAACACCA
1 GCACTTGGCCTACGAGGTATAAAACCCAAACATAACACCA
79061362 GCAC
1 GCAC
79061366 GAAGCCTACG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.37, C:0.30, G:0.18, T:0.15
Consensus pattern (40 bp):
GCACTTGGCCTACGAGGTATAAAACCCAAACATAACACCA
Found at i:79061373 original size:40 final size:40
Alignment explanation
Indices: 79061289--79061375 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
79061279 TTGGCACTTG
* * * ***
79061289 GCCTGCGAGGTATAAAACCCGAACATAACACTAGCACTTG
1 GCCTACGAGGTATAAAACCCAAACATAACACCAGCACGAA
79061329 GCCTACGAGGTATAAAACCCAAACATAACACCAGCACGAA
1 GCCTACGAGGTATAAAACCCAAACATAACACCAGCACGAA
79061369 GCCTACG
1 GCCTACG
79061376 GGACTTTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.38, C:0.30, G:0.18, T:0.14
Consensus pattern (40 bp):
GCCTACGAGGTATAAAACCCAAACATAACACCAGCACGAA
Found at i:79063798 original size:30 final size:30
Alignment explanation
Indices: 79063762--79063821 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
79063752 AATACCCGCC
* *
79063762 TAAAACCTTATTTTGATGGGATTCATAGCA
1 TAAAACCTTATTTTGATGAGATTCACAGCA
79063792 TAAAACCTTATTTTGATGAGATTCACAGCA
1 TAAAACCTTATTTTGATGAGATTCACAGCA
79063822 GGAATGAGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (30 bp):
TAAAACCTTATTTTGATGAGATTCACAGCA
Found at i:79070734 original size:35 final size:35
Alignment explanation
Indices: 79070688--79070758 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
79070678 ATGTAGATAT
*
79070688 ATGAATGCGTTGACCCTGGGTCAATTAAAGCAACA
1 ATGAATGCGTTGACCCCGGGTCAATTAAAGCAACA
79070723 ATGAATGCGTTGACCCCGGGTCAATTAAAGCAACA
1 ATGAATGCGTTGACCCCGGGTCAATTAAAGCAACA
79070758 A
1 A
79070759 CACTTGTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (35 bp):
ATGAATGCGTTGACCCCGGGTCAATTAAAGCAACA
Found at i:79076814 original size:22 final size:23
Alignment explanation
Indices: 79076792--79076843 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
79076782 ATGTTTTTAC
79076792 TTTTATTCTACTTTAAGACTACT
1 TTTTATTCTACTTTAAGACTACT
* *
79076815 TTTTATTTTTCTTTAAG-CTTA-T
1 TTTTATTCTACTTTAAGAC-TACT
79076837 TTTTATT
1 TTTTATT
79076844 AGGTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.21, C:0.12, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTCTACTTTAAGACTACT
Found at i:79078868 original size:13 final size:13
Alignment explanation
Indices: 79078850--79078876 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79078840 GAAGTAATCG
79078850 CACACGGGCGTGT
1 CACACGGGCGTGT
79078863 CACACGGGCGTGT
1 CACACGGGCGTGT
79078876 C
1 C
79078877 CCTGTTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:79080441 original size:46 final size:44
Alignment explanation
Indices: 79080228--79080443 Score: 150
Period size: 46 Copynumber: 4.7 Consensus size: 44
79080218 TGCGTGAGCT
* * * *
79080228 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGA-GAGCC
1 AGTGTAAGACATGTCTGGAACATGCATCGG-C-TATGA-GATGTGTC
* * * *
79080274 AGTGTTAGACCATGTCTGGAATATGGCATCGGC-ATTGAGACGAGTGC
1 AGTGTAAGA-CATGTCTGGAACAT-GCATCGGCTA-TGAGATGTGT-C
* * *
79080321 TAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
1 -AGTGTAAGACATGTCTGGAACATGCATCGG-CTATGAGATGT--GTC
* * *
79080368 ACTGCAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGAACATGCATCGGCTATGAGATGTGTC
* *
79080412 AGTGTAAGACCATGTATGGAAAATGGCATCGG
1 AGTGTAAGA-CATGTCTGGAACAT-GCATCGG
79080444 TACCTACACC
Statistics
Matches: 136, Mismatches: 21, Indels: 26
0.74 0.11 0.14
Matches are distributed among these distances:
44 9 0.07
45 16 0.12
46 67 0.49
47 28 0.21
48 16 0.12
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGAACATGCATCGGCTATGAGATGTGTC
Found at i:79102242 original size:48 final size:48
Alignment explanation
Indices: 79102165--79102435 Score: 301
Period size: 48 Copynumber: 5.6 Consensus size: 48
79102155 TGATACTAGG
* * *
79102165 GTTATGTACGAGCCAATGTAAGACAATGTTTGGAACATGGCATTGGCATT
1 GTTATG-A-GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* **
79102215 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAACATT
1 GTTATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * *
79102263 GTTATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATTGGCCTA
1 GTTATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * *
79102311 AATATGCA-AGCCAATGTAAGACCATGTTTGGAACATGGCGTCGGCATT
1 GTTATG-AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* ** * **
79102359 GTTATGTGAGCCAGTGTAAGACCATGACTGGGACATGGCATCGGCACC
1 GTTATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
79102407 GATCTATGAGAGCCAGTGTAAGACCATGT
1 G-T-TATGAGAGCCAGTGTAAGACCATGT
79102436 CCAGGACATG
Statistics
Matches: 184, Mismatches: 33, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
48 152 0.83
49 3 0.02
50 29 0.16
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
GTTATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
Found at i:79105921 original size:50 final size:50
Alignment explanation
Indices: 79105862--79105960 Score: 135
Period size: 50 Copynumber: 2.0 Consensus size: 50
79105852 TTCGTGAGAG
* * * * *
79105862 CTTACCGATTTCCAGCTCGTGAGAGCTTATCGATTCTTAGCTCGTATGAT
1 CTTACCGATTTACAGCTCGTAAGAGCATACCGATTCATAGCTCGTATGAT
* *
79105912 CTTATCGATTTACAGCTCGTAAGAGCATACCGATTCATAGCTTGTATGA
1 CTTACCGATTTACAGCTCGTAAGAGCATACCGATTCATAGCTCGTATGA
79105961 GCATACATGT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (50 bp):
CTTACCGATTTACAGCTCGTAAGAGCATACCGATTCATAGCTCGTATGAT
Found at i:79105953 original size:25 final size:25
Alignment explanation
Indices: 79105825--79105962 Score: 98
Period size: 25 Copynumber: 5.5 Consensus size: 25
79105815 GACACACCAC
* * **
79105825 AGCTCGTATGAGCTTACCAATTTTT
1 AGCTCGTAAGAGCTTACCGATTCAT
* * *
79105850 AGTTCGTGAGAGCTTACCGATTTC-C
1 AGCTCGTAAGAGCTTACCGA-TTCAT
* * *
79105875 AGCTCGTGAGAGCTTATCGATTCTT
1 AGCTCGTAAGAGCTTACCGATTCAT
* * * * *
79105900 AGCTCGTATGATCTTATCGATTTAC
1 AGCTCGTAAGAGCTTACCGATTCAT
*
79105925 AGCTCGTAAGAGCATACCGATTCAT
1 AGCTCGTAAGAGCTTACCGATTCAT
* *
79105950 AGCTTGTATGAGC
1 AGCTCGTAAGAGC
79105963 ATACATGTAC
Statistics
Matches: 88, Mismatches: 23, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
24 3 0.03
25 83 0.94
26 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (25 bp):
AGCTCGTAAGAGCTTACCGATTCAT
Found at i:79106156 original size:30 final size:30
Alignment explanation
Indices: 79106117--79106178 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
79106107 TACATGACAT
79106117 ACATGGAAAT-GAT-ATTACATGATATATTGAA
1 ACATGGAAATGGATGA-TACATG-TATA-TGAA
79106148 ACAT-GAAATGGATGATACATGTATATGAA
1 ACATGGAAATGGATGATACATGTATATGAA
79106177 AC
1 AC
79106179 TTGATTAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 6 0.21
30 9 0.31
31 13 0.45
32 1 0.03
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (30 bp):
ACATGGAAATGGATGATACATGTATATGAA
Found at i:79107804 original size:30 final size:30
Alignment explanation
Indices: 79107743--79107804 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
79107733 TTGATTTTCG
* * * **
79107743 AGTCTAGGGGTAAAATGGTCATTTTGTCAA
1 AGTCTAAGGGCAAAATGGTCAATTTACCAA
79107773 AGTCTAAGGGCAAAATGGTCAATTTACCAA
1 AGTCTAAGGGCAAAATGGTCAATTTACCAA
79107803 AG
1 AG
79107805 AAGTGAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.27
Consensus pattern (30 bp):
AGTCTAAGGGCAAAATGGTCAATTTACCAA
Found at i:79109492 original size:21 final size:22
Alignment explanation
Indices: 79109452--79109493 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
79109442 GTCAAATTGA
*
79109452 TCACACTGGCGTGTTGCCCCTT
1 TCACACGGGCGTGTTGCCCCTT
79109474 TCACACGGGCGTG-TGCCCCT
1 TCACACGGGCGTGTTGCCCCT
79109494 GTGTCAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.38, G:0.26, T:0.26
Consensus pattern (22 bp):
TCACACGGGCGTGTTGCCCCTT
Found at i:79110923 original size:46 final size:46
Alignment explanation
Indices: 79110777--79111094 Score: 209
Period size: 46 Copynumber: 6.7 Consensus size: 46
79110767 TTACTTGTGT
* * * *
79110777 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA-GACGA
* * * *
79110823 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATAGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACGA
* *
79110871 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACG-A
* *
79110918 -AGCTAGTGTAAGACATGTTTAGGACATGCATCGG-CT--AAACGA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGA
* * * * ** * *
79110960 TGTGTTAGTGTAAGACCACGTCTGGGACATGGCATCAACAC-GGATATGCGA
1 -GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGC-CTCGAGA--CGA
* *
79111011 GAGCTAGTATAAGACCATGTCT-GGAACATGGCATCGGCCTCGATGATGA
1 GAGCTAGTGTAAGA-CATGTCTAGG-ACAT-GCATCGGCCTCGA-GACGA
* * **
79111060 TAGCCAGTGTAAGACCATGTCGGGGACATGGCATC
1 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATC
79111095 AGCAGTTACC
Statistics
Matches: 215, Mismatches: 39, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
42 1 0.00
43 4 0.02
44 11 0.05
45 13 0.06
46 63 0.29
47 27 0.13
48 23 0.11
49 36 0.17
50 33 0.15
51 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGA
Found at i:79113710 original size:40 final size:40
Alignment explanation
Indices: 79113650--79113833 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
79113640 TATTCGAATG
* * *
79113650 ATATCCAGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGGCT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
79113690 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
79113730 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
79113770 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
79113810 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
79113834 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 121 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:79113783 original size:80 final size:80
Alignment explanation
Indices: 79113650--79113833 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
79113640 TATTCGAATG
* * * * *
79113650 ATATCCAGGCTAAGTCCCGAAGGCTTTTATGCTAGTGGCTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
79113714 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
79113730 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
79113795 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
79113810 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
79113834 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 3 0.03
80 89 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:79118348 original size:40 final size:39
Alignment explanation
Indices: 79118243--79118449 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 39
79118233 TGGATGATAA
* *
79118243 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-T
79118283 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
79118322 CCGGGCTAAGTCCCGAAGCCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
79118362 CCGGGCTAAGTCCCGAAGCCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
79118402 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
79118442 CC-GGCTAA
1 CCGGGCTAA
79118450 ATTCTGAAGG
Statistics
Matches: 154, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
39 41 0.27
40 113 0.73
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:79122002 original size:59 final size:59
Alignment explanation
Indices: 79121910--79122028 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
79121900 GCCGTATGTG
*
79121910 CATAGAGATCATGTCATAATGCAAATCAAAATCGTGCTCTTTGTACGTGGCTATTGAGC
1 CATAGAGATCATGTCATAAAGCAAATCAAAATCGTGCTCTTTGTACGTGGCTATTGAGC
*
79121969 CATAGAGATCATGTCATAAAGCAAATCAAAATCGTGCTCTTTGTATGTGGCTATTGAGC
1 CATAGAGATCATGTCATAAAGCAAATCAAAATCGTGCTCTTTGTACGTGGCTATTGAGC
79122028 C
1 C
79122029 GAAATTAGTA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30
Consensus pattern (59 bp):
CATAGAGATCATGTCATAAAGCAAATCAAAATCGTGCTCTTTGTACGTGGCTATTGAGC
Found at i:79122186 original size:86 final size:86
Alignment explanation
Indices: 79122085--79122259 Score: 332
Period size: 86 Copynumber: 2.0 Consensus size: 86
79122075 GAAAATGAAA
*
79122085 TATGGATGTGTCGTGATTATTGATATATGTGCATGGTTATTCGAATGATATCTGGGCTAAGTCCC
1 TATGGATGTGTCGTGATTATTGATATATGTGCATGGTTATTCGAATGATATCCGGGCTAAGTCCC
79122150 GAAGGCTTTTATGCTAGTGAC
66 GAAGGCTTTTATGCTAGTGAC
79122171 TATGGATGTGTCGTGATTATTGATATATGTGCATGGTTATTCGAATGATATCCGGGCTAAGTCCC
1 TATGGATGTGTCGTGATTATTGATATATGTGCATGGTTATTCGAATGATATCCGGGCTAAGTCCC
*
79122236 GAAGGCTTTTATGCTTGTGAC
66 GAAGGCTTTTATGCTAGTGAC
79122257 TAT
1 TAT
79122260 ATCCGGACTA
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 87 1.00
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.38
Consensus pattern (86 bp):
TATGGATGTGTCGTGATTATTGATATATGTGCATGGTTATTCGAATGATATCCGGGCTAAGTCCC
GAAGGCTTTTATGCTAGTGAC
Found at i:79129778 original size:40 final size:40
Alignment explanation
Indices: 79129716--79129899 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
79129706 TATTCGAATG
* * *
79129716 ATATCCGGGCTAA-CTCTTGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTATGCTAGTGACT
* * *
79129756 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
79129796 ACATCCGGGCTAAGA-CCTGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTATGCTAGTGACT
*
79129836 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
79129876 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
79129900 CTTGTGCGAG
Statistics
Matches: 120, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
39 3 0.03
40 111 0.93
41 6 0.05
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:79129856 original size:80 final size:79
Alignment explanation
Indices: 79129718--79129935 Score: 235
Period size: 80 Copynumber: 2.7 Consensus size: 79
79129708 TTCGAATGAT
** * * * *
79129718 ATCCGGGCTAACTCTTGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGCAT
1 ATCCGGGCTAAGACCTGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAG-TCCCGAAGGCAT
* *
79129782 TTGTGCGAGTTG-CTAC
64 TTATGCGAG-TGACCAC
*
79129798 ATCCGGGCTAAGACCTGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGACCTGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATT
* *
79129863 TATGCTAGTGACCAT
65 TATGCGAGTGACCAC
* * * * *
79129878 ATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATCCGGGCTAAGACCTGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAG
79129936 ATAAATTAAT
Statistics
Matches: 118, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
78 14 0.12
79 20 0.17
80 84 0.71
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGACCTGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTT
ATGCGAGTGACCAC
Found at i:79133366 original size:40 final size:40
Alignment explanation
Indices: 79133306--79133489 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
79133296 TATTCGAATG
* * *
79133306 ATATCTGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
79133346 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* * *
79133386 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
79133426 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
*
79133466 ATATCCGGGCTAAGACCCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
79133490 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 120 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:79133439 original size:80 final size:79
Alignment explanation
Indices: 79133306--79133511 Score: 245
Period size: 80 Copynumber: 2.6 Consensus size: 79
79133296 TATTCGAATG
* * * *
79133306 ATATCTGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTAAG-TCCCGAAGGC
* *
79133370 ATTTGTGCGAGTTG-CT
64 ATTTATGCGAG-TGACC
* *
79133386 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAGGCA
*
79133451 TTTATGCTAGTGACC
65 TTTATGCGAGTGACC
* * * *
79133466 ATATCCGGGCTAAGACCCAAAGGCCTTGTGCGAGTGGTTATATCCG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCG
79133512 CTTGCTGTAA
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 21 0.19
80 88 0.81
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAGGCAT
TTATGCGAGTGACC
Found at i:79139118 original size:37 final size:37
Alignment explanation
Indices: 79139077--79139150 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
79139067 GTGAAATGTA
79139077 AATATTTCATTTCTACCATGTATTATGTGTCTTGATG
1 AATATTTCATTTCTACCATGTATTATGTGTCTTGATG
79139114 AATATTTCATTTCTACCATGTATTATGTGTCTTGATG
1 AATATTTCATTTCTACCATGTATTATGTGTCTTGATG
79139151 TTTCATGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (37 bp):
AATATTTCATTTCTACCATGTATTATGTGTCTTGATG
Found at i:79166623 original size:122 final size:123
Alignment explanation
Indices: 79166406--79166858 Score: 547
Period size: 122 Copynumber: 3.6 Consensus size: 123
79166396 ATTACCATAA
* * ** *
79166406 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* *
79166471 CGGAT-ATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
66 CGGATAAAATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
*
79166528 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
79166593 CGGATAAAATC-ACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAAAATGGGTCTTAGCCCGG
66 CGGATAAAATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGAT-ATAT--ATC--A------
* *
79166657 ATATT
120 A-CTC
*
79166662 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * * *
79166727 CGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGG--ATATATCAACTC
66 CGGATA-AAATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
* * * *
79166784 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
79166848 CCGGATAAAAT
65 CCGGATAAAAT
79166859 TCAAATGCTC
Statistics
Matches: 285, Mismatches: 30, Indels: 33
0.82 0.09 0.09
Matches are distributed among these distances:
121 3 0.01
122 158 0.55
123 12 0.04
125 2 0.01
127 1 0.00
129 1 0.00
131 2 0.01
133 4 0.01
134 70 0.25
135 4 0.01
136 28 0.10
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (123 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATAAAATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
Found at i:79166639 original size:40 final size:41
Alignment explanation
Indices: 79166406--79166855 Score: 421
Period size: 40 Copynumber: 10.8 Consensus size: 41
79166396 ATTACCATAA
* * ** *
79166406 GCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
*
79166446 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
*
79166486 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-ATATCAACTC
*
79166528 GCACAAATGCCTGCGGGTCTTAGCCCGGAT-ATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
* *
79166568 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
* * * *** *
79166608 GCACAATTGCCTTCGGGACTTAGCCCGGATAAAATGGGTCTTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATAT-CAAC-TC
* * * * *** * *
79166651 GCCCGGATATTGCACAATTGCCTTCGG-GTCTTAGCCCG-GATATATCAACTC
1 GCAC--A-AATGC-C--TT--C--GGGTCT-TAGCCCGGATA-ATATCAACTC
79166702 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-ATATCAACTC
*
79166744 GCACAAATGCCTGCGGGTCTTAGCCCGGAT-ATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
* *
79166784 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
* *
79166824 GCACAATTGCCTTCGGGACTTAGCCCGGATAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAA
79166856 AATTCAAATG
Statistics
Matches: 344, Mismatches: 44, Indels: 44
0.80 0.10 0.10
Matches are distributed among these distances:
40 210 0.61
41 14 0.04
42 80 0.23
43 6 0.02
45 3 0.01
46 5 0.01
47 2 0.01
48 4 0.01
49 3 0.01
51 5 0.01
52 3 0.01
53 9 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
Found at i:79166763 original size:176 final size:175
Alignment explanation
Indices: 79166484--79166818 Score: 566
Period size: 176 Copynumber: 1.9 Consensus size: 175
79166474 ATATATCAAC
79166484 TTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTT
1 TTGCACAATTGCCTTCGGGTCTTAGCCCGGA-ATATATCAACTCGCACAAATGCCTGCGGGTCTT
*
79166549 AGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACA
65 AGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGAT-AAATCAACTAGCACA
*
79166613 ATTGCCTTCGGGACTTAGCCCGGATAAAATGGGTCTTAGCCCGGATA
129 AATGCCTTCGGGACTTAGCCCGGATAAAATGGGTCTTAGCCCGGATA
*
79166660 TTGCACAATTGCCTTCGGGTCTTAGCCCGG-ATATATCAACTCGCACAAATGCCTTCGGGTCTTA
1 TTGCACAATTGCCTTCGGGTCTTAGCCCGGAATATATCAACTCGCACAAATGCCTGCGGGTCTTA
* *
79166724 GCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACA
66 GCCCGG--ATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATAAATCAACTAGCACA
*
79166789 AATGCCTTCGGGTCTTAGCCCGGATAAAAT
129 AATGCCTTCGGGACTTAGCCCGGATAAAAT
79166819 CACTAGCACA
Statistics
Matches: 150, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
174 39 0.26
175 4 0.03
176 107 0.71
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (175 bp):
TTGCACAATTGCCTTCGGGTCTTAGCCCGGAATATATCAACTCGCACAAATGCCTGCGGGTCTTA
GCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATAAATCAACTAGCACAAA
TGCCTTCGGGACTTAGCCCGGATAAAATGGGTCTTAGCCCGGATA
Found at i:79166827 original size:216 final size:216
Alignment explanation
Indices: 79166446--79166858 Score: 799
Period size: 216 Copynumber: 1.9 Consensus size: 216
79166436 ATAGCAACTC
* *
79166446 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
79166511 CGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAAT
66 CGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAAT
79166576 GCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAAA
131 GCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAAA
79166641 ATGGGTCTTAGCCCGGATATT
196 ATGGGTCTTAGCCCGGATATT
*
79166662 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
79166727 CGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAAT
66 CGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAAT
79166792 GCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAAA
131 GCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAAA
79166857 AT
196 AT
79166859 TCAAATGCTC
Statistics
Matches: 194, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
216 194 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (216 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAAT
GCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAAA
ATGGGTCTTAGCCCGGATATT
Found at i:79177734 original size:25 final size:25
Alignment explanation
Indices: 79177705--79177755 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
79177695 GATACAAGTG
79177705 ACATGTCACTAGGAAACCATGAGTT
1 ACATGTCACTAGGAAACCATGAGTT
79177730 ACATGTCACTAGGAAACCATGAGTT
1 ACATGTCACTAGGAAACCATGAGTT
79177755 A
1 A
79177756 TGTGATCTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (25 bp):
ACATGTCACTAGGAAACCATGAGTT
Found at i:79177778 original size:39 final size:39
Alignment explanation
Indices: 79177724--79177802 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
79177714 TAGGAAACCA
79177724 TGAGTTACATGTCACTAGGAAACCATGAGTTATGTGATC
1 TGAGTTACATGTCACTAGGAAACCATGAGTTATGTGATC
79177763 TGAGTTACATGTCACTAGGAAACCATGAGTTATGTGATC
1 TGAGTTACATGTCACTAGGAAACCATGAGTTATGTGATC
79177802 T
1 T
79177803 ATGTGAATCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (39 bp):
TGAGTTACATGTCACTAGGAAACCATGAGTTATGTGATC
Found at i:79183366 original size:47 final size:47
Alignment explanation
Indices: 79183314--79183503 Score: 344
Period size: 47 Copynumber: 4.0 Consensus size: 47
79183304 GATAATTGTG
* * * *
79183314 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
79183361 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
79183408 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
79183455 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
79183502 AT
1 AT
79183504 ATGTGATGAA
Statistics
Matches: 139, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 139 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:79183405 original size:22 final size:22
Alignment explanation
Indices: 79183377--79183499 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
79183367 AAGTGTATAT
79183377 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
79183399 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
79183423 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * ***
79183446 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
79183470 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
79183493 ATGTGAT
1 ATGTGAT
79183500 GAATATGTGA
Statistics
Matches: 71, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 23 0.32
23 16 0.23
24 16 0.23
25 16 0.23
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:79183529 original size:21 final size:21
Alignment explanation
Indices: 79183503--79183547 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
79183493 ATGTGATGAA
79183503 TATGTGATGAATGTGAAAGTG
1 TATGTGATGAATGTGAAAGTG
79183524 TATGTGATGAATGTGAAAGTG
1 TATGTGATGAATGTGAAAGTG
79183545 TAT
1 TAT
79183548 ATATGTGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.36
Consensus pattern (21 bp):
TATGTGATGAATGTGAAAGTG
Found at i:79183578 original size:22 final size:22
Alignment explanation
Indices: 79183550--79183672 Score: 88
Period size: 22 Copynumber: 5.3 Consensus size: 22
79183540 AAGTGTATAT
79183550 ATGTGATAAGGCCGAATGGCTA
1 ATGTGATAAGGCCGAATGGCTA
* * **
79183572 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCTA
79183596 TATGTGATAAGGCCGAATGGCTA
1 -ATGTGATAAGGCCGAATGGCTA
* * **
79183619 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCTA
79183643 TATGTGATAAGGCCGAATGGCTA
1 -ATGTGATAAGGCCGAATGGCTA
79183666 ATGTGAT
1 ATGTGAT
79183673 GAATGTGAAA
Statistics
Matches: 75, Mismatches: 16, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
22 23 0.31
23 18 0.24
24 18 0.24
25 16 0.21
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCTA
Found at i:79183580 original size:47 final size:47
Alignment explanation
Indices: 79183525--79183843 Score: 503
Period size: 47 Copynumber: 6.7 Consensus size: 47
79183515 GTGAAAGTGT
*
79183525 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
*
79183572 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
*
79183619 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
*
79183666 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * *
79183713 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
* * *
79183762 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * *
79183809 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
79183844 TCCCGAAGGG
Statistics
Matches: 255, Mismatches: 15, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
47 210 0.82
49 45 0.18
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:79183641 original size:173 final size:173
Alignment explanation
Indices: 79183352--79183676 Score: 623
Period size: 173 Copynumber: 1.9 Consensus size: 173
79183342 CTAATGGCCG
79183352 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
79183417 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
79183482 CCGAATGGCCAATGTGATGAATATGTGATGAATGTGAAAGTGT
131 CCGAATGGCCAATGTGATGAATATGTGATGAATGTGAAAGTGT
*
79183525 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
79183590 TGTATATATGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
*
79183655 CCGAATGGCTAATGTGATGAAT
131 CCGAATGGCCAATGTGATGAAT
79183677 GTGAAAGTGT
Statistics
Matches: 149, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
173 149 1.00
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.30
Consensus pattern (173 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCGAATGGCCAATGTGATGAATATGTGATGAATGTGAAAGTGT
Found at i:79183696 original size:220 final size:220
Alignment explanation
Indices: 79183314--79183723 Score: 748
Period size: 220 Copynumber: 1.9 Consensus size: 220
79183304 GATAATTGTG
* * *
79183314 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
79183379 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
79183444 CAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGTG
131 CAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGTG
79183509 ATGAATGTGAAAGTGTATGTGATGA
196 ATGAATGTGAAAGTGTATGTGATGA
* *
79183534 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
*
79183599 GTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
* *
79183664 TAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAAT
131 CAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
79183724 GTGAAAGTGT
Statistics
Matches: 182, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
220 182 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.30
Consensus pattern (220 bp):
ATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
CAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGTG
ATGAATGTGAAAGTGTATGTGATGA
Found at i:79183815 original size:143 final size:141
Alignment explanation
Indices: 79183527--79183843 Score: 499
Period size: 143 Copynumber: 2.2 Consensus size: 141
79183517 GAAAGTGTAT
*
79183527 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
79183592 TATATATGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
66 TATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
* *
79183657 GAATGGCTAAT
131 GAATGGCCAAC
*
79183668 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
79183733 TATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGG
66 --TATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGG
*
79183798 CCGAGTGGCCAAC
129 CCGAATGGCCAAC
* *
79183811 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
79183844 TCCCGAAGGG
Statistics
Matches: 161, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
141 63 0.39
143 98 0.61
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (141 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
GAATGGCCAAC
Found at i:79186277 original size:32 final size:32
Alignment explanation
Indices: 79186235--79186296 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
79186225 ATTGAATTCG
79186235 CTTACAAGGCTTTGTACGGGCGTAAATGTCAC
1 CTTACAAGGCTTTGTACGGGCGTAAATGTCAC
*
79186267 CTTACGAGGCTTTGTACGGGCGTAAATGTC
1 CTTACAAGGCTTTGTACGGGCGTAAATGTC
79186297 GTACGGGCGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (32 bp):
CTTACAAGGCTTTGTACGGGCGTAAATGTCAC
Found at i:79186302 original size:17 final size:17
Alignment explanation
Indices: 79186280--79186318 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
79186270 ACGAGGCTTT
79186280 GTACGGGCGTAAATGTC
1 GTACGGGCGTAAATGTC
79186297 GTACGGGCGTAAATGTC
1 GTACGGGCGTAAATGTC
79186314 GTACG
1 GTACG
79186319 CCATTGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.23, C:0.18, G:0.36, T:0.23
Consensus pattern (17 bp):
GTACGGGCGTAAATGTC
Found at i:79188704 original size:19 final size:20
Alignment explanation
Indices: 79188680--79188717 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79188670 GGTACCACTA
79188680 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
79188699 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
79188718 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:79189013 original size:46 final size:45
Alignment explanation
Indices: 79188946--79189113 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 45
79188936 CGCCCCTAAG
*
79188946 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* *
79188992 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* ** * *
79189039 CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAAA
* *
79189085 TGAACTCGAACTCAACTCAATGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
79189114 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 53 0.53
47 28 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:79189057 original size:93 final size:93
Alignment explanation
Indices: 79188947--79189117 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
79188937 GCCCCTAAGT
** * *
79188947 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
79189012 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
79189040 GAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
*
79189105 TGAGTTCGGATGC
66 CGAGTTCGGATGC
79189118 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:79191903 original size:14 final size:14
Alignment explanation
Indices: 79191884--79191910 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
79191874 TTGTTTTTGG
79191884 TTTGGTTTATTTTT
1 TTTGGTTTATTTTT
79191898 TTTGGTTTATTTT
1 TTTGGTTTATTTT
79191911 GGATTGGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.00, G:0.15, T:0.78
Consensus pattern (14 bp):
TTTGGTTTATTTTT
Found at i:79197129 original size:40 final size:40
Alignment explanation
Indices: 79196940--79197165 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
79196930 TTGAATGATG
* * * *
79196940 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
79196980 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
79197020 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
79197060 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79197100 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
79197141 -CCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79197166 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 156 0.93
41 10 0.06
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79197183 original size:80 final size:79
Alignment explanation
Indices: 79196993--79197198 Score: 206
Period size: 80 Copynumber: 2.6 Consensus size: 79
79196983 GGACTAAGAT
** *
79196993 CCGAAGGCATTTGTGCGAGAT-ACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGG-TTAA-ATCCCGAAGGCATTTGTGCGAGATAC
* *
79197056 TAATTCCGGGCTAAGTC
63 TAATACCAGGCTAAGTC
** * *
79197073 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTGTGCGAGA-TACT
*
79197137 -ATAACCAGGCTATGTC
64 AAT-ACCAGGCTAAGTC
* *
79197153 CCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
79197199 TACGTGATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
79 20 0.18
80 87 0.80
81 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAA
TACCAGGCTAAGTC
Found at i:79199067 original size:40 final size:40
Alignment explanation
Indices: 79198983--79199166 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
79198973 TTGAATGCTG
* * * *
79198983 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
79199022 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
79199063 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
79199103 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
79199143 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
79199167 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:79199120 original size:80 final size:81
Alignment explanation
Indices: 79198983--79199163 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
79198973 TTGAATGCTG
* *
79198983 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
79199047 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
79199063 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
79199124 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
79199143 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
79199164 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:79203759 original size:37 final size:37
Alignment explanation
Indices: 79203709--79203787 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
79203699 TTATTACGAA
* * * *
79203709 GTCTTATCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
79203746 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
79203783 GTCTT
1 GTCTT
79203788 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:79203985 original size:47 final size:47
Alignment explanation
Indices: 79203906--79204275 Score: 528
Period size: 47 Copynumber: 7.7 Consensus size: 47
79203896 CCCTTCGGGA
* * * * *
79203906 CTTATCACACT-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
79203953 CCTGTCACATATATACACTTTCACATTTATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79204000 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGG
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79204047 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA-GGC
*
79204097 TTATATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79204145 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79204194 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79204241 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
79204276 AGAATCCTAA
Statistics
Matches: 295, Mismatches: 20, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
46 2 0.01
47 161 0.55
48 4 0.01
49 119 0.40
50 3 0.01
51 6 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79204132 original size:98 final size:96
Alignment explanation
Indices: 79203906--79204254 Score: 542
Period size: 96 Copynumber: 3.6 Consensus size: 96
79203896 CCCTTCGGGA
* * * * * * *
79203906 CTTATCACACT-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATA
1 CTTATCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
* *
79203968 CACTTTCACATTTATCACATCAGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
79204000 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGGCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
79204065 ACTTTCACATTCATCACATCGGCCATTAGGGC
66 ACTTTCACATTCATCACATCGGCCATTA-GGC
*
79204097 TTATATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
79204162 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
79204194 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
79204255 GCATGTTCAC
Statistics
Matches: 236, Mismatches: 14, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
93 1 0.00
94 45 0.19
96 92 0.39
97 8 0.03
98 90 0.38
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79207897 original size:38 final size:38
Alignment explanation
Indices: 79207855--79207948 Score: 118
Period size: 38 Copynumber: 2.5 Consensus size: 38
79207845 TTAAAGACCT
*
79207855 GCAGGCTTCGTGCTGGTAAAATATCCA-GGTTAAATCCC
1 GCAGGCTTCGTGCTGGTAAAATAT-CAGGGATAAATCCC
** *
79207893 GCAGGCTTCGTGCTGGTATTATATTAGGGATAAATCCC
1 GCAGGCTTCGTGCTGGTAAAATATCAGGGATAAATCCC
* *
79207931 GCAGGCCTAGTGCTGGTA
1 GCAGGCTTCGTGCTGGTA
79207949 TGATATTCGG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
37 1 0.02
38 48 0.98
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (38 bp):
GCAGGCTTCGTGCTGGTAAAATATCAGGGATAAATCCC
Found at i:79208000 original size:43 final size:43
Alignment explanation
Indices: 79207952--79208872 Score: 1743
Period size: 43 Copynumber: 21.4 Consensus size: 43
79207942 GCTGGTATGA
79207952 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
79207995 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
79208038 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208081 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208124 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208167 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208210 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208253 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208296 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208339 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208382 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208425 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208468 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208511 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208554 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208597 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208640 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208683 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
79208726 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTAATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* ** * *
79208769 TATTCGGCCCTTTTTGCCTAGCAGGCTTCGTGCTGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
79208812 TATTCGGGTCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
79208855 TATTCGGGCCTTCGTGCC
1 TATTCGGGCCTTCGTGCC
79208873 GGTGATGTGT
Statistics
Matches: 857, Mismatches: 21, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 857 1.00
ACGTcount: A:0.10, C:0.25, G:0.34, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:79208875 original size:27 final size:27
Alignment explanation
Indices: 79208837--79208899 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
79208827 GCCTAGCAGG
*
79208837 CTTCATGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTGTATTCGGGC
79208864 CTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTGTATTCGGGC
*
79208891 CGTCGTGCC
1 CTTCGTGCC
79208900 TAGCAGGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.08, C:0.25, G:0.35, T:0.32
Consensus pattern (27 bp):
CTTCGTGCCGGTGATGTGTATTCGGGC
Found at i:79211645 original size:48 final size:48
Alignment explanation
Indices: 79211585--79211761 Score: 223
Period size: 48 Copynumber: 3.7 Consensus size: 48
79211575 TATGTGTGCT
*
79211585 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACAATATGAGAGCC
* * * *
79211633 AGTGTAAGACCATATTTGGAACATGGCATCGG-TA-ATGTAATGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACA-AT-ATGAGAGCC
* * * * *
79211681 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACAATATGAGAGCC
*
79211729 AGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGC
79211762 AATTCACCCT
Statistics
Matches: 109, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.01
47 2 0.02
48 106 0.97
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACAATATGAGAGCC
Found at i:79211749 original size:96 final size:96
Alignment explanation
Indices: 79211585--79211760 Score: 307
Period size: 96 Copynumber: 1.8 Consensus size: 96
79211575 TATGTGTGCT
*
79211585 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATATTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATATTT
79211650 GGAACATGGCATCGGTAATGTAATGAGAGCC
66 GGAACATGGCATCGGTAATGTAATGAGAGCC
* * * *
79211681 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATATTT
79211746 GGAACATGGCATCGG
66 GGAACATGGCATCGG
79211761 CAATTCACCC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATATTT
GGAACATGGCATCGGTAATGTAATGAGAGCC
Found at i:79219498 original size:51 final size:51
Alignment explanation
Indices: 79219439--79219540 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
79219429 AAATTGGGGA
79219439 AAAGCTTTTGGGAAAACTTGATTGACTAAGACAATACCCAAGGAAAAATCC
1 AAAGCTTTTGGGAAAACTTGATTGACTAAGACAATACCCAAGGAAAAATCC
79219490 AAAGCTTTTGGGAAAACTTGATTGACTAAGACAATACCCAAGGAAAAATCC
1 AAAGCTTTTGGGAAAACTTGATTGACTAAGACAATACCCAAGGAAAAATCC
79219541 GCCTAGACTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.22
Consensus pattern (51 bp):
AAAGCTTTTGGGAAAACTTGATTGACTAAGACAATACCCAAGGAAAAATCC
Found at i:79222749 original size:46 final size:44
Alignment explanation
Indices: 79222577--79222752 Score: 135
Period size: 45 Copynumber: 3.8 Consensus size: 44
79222567 TAGGTTATTG
* **
79222577 TGAGCTAGTGTAAGACCATGTCTGGGACATGACATCTCCATTGA-GACGA
1 TGAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGC--T-ACGA-GA
* *
79222626 -GAGCCAGTGTAAGACATGTCTGGGAC-TTCATCGGCCT-CAAGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGA
* * *
79222668 TTTAAGCCAGTATAAGACATGTTTGGGACATGCATCGGCTACGAGA
1 --TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGA
* *
79222714 TGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 TGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
79222753 ATCCTACCCC
Statistics
Matches: 103, Mismatches: 15, Indels: 21
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 13 0.13
45 41 0.40
46 21 0.20
47 12 0.12
48 13 0.13
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (44 bp):
TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGA
Found at i:79231619 original size:46 final size:45
Alignment explanation
Indices: 79231514--79231682 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 45
79231504 ATTGTGAGCT
* * *
79231514 AGTGCAAGACCATGTCTGGGACATTGCATCGCCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACA-TGCATCGCC-TCGAGATGA-AGCC
*
79231562 AGTGTAGGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GCCTCGAGATG-AAGCC
* * *
79231608 AATGTAAGA-CATGTCTGGGACATGCATCGACTACGAGATGAA-AC
1 AGTGTAAGACCATGTCTGGGACATGCATCGCCT-CGAGATGAAGCC
*
79231652 AGTGTAAGACCTTGTCTGGGACATGACATCG
1 AGTGTAAGACCATGTCTGGGACATG-CATCG
79231683 GTATTCTACC
Statistics
Matches: 106, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
44 9 0.08
45 19 0.18
46 54 0.51
47 17 0.16
48 7 0.07
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGCCTCGAGATGAAGCC
Found at i:79236524 original size:30 final size:29
Alignment explanation
Indices: 79236467--79236524 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
79236457 CATTTTTACT
*
79236467 TTTCTCTCAAAACTTTTACTCCTTCCCAC
1 TTTCTCTCAAAACTTTTACTCCCTCCCAC
79236496 TTTCTC-CGAAAACTTTTACTCCCCTCCCA
1 TTTCTCTC-AAAACTTTTACT-CCCTCCCA
79236525 TCCCAGCCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 1 0.04
29 18 0.69
30 7 0.27
ACGTcount: A:0.21, C:0.40, G:0.02, T:0.38
Consensus pattern (29 bp):
TTTCTCTCAAAACTTTTACTCCCTCCCAC
Found at i:79237846 original size:48 final size:48
Alignment explanation
Indices: 79237786--79238006 Score: 239
Period size: 48 Copynumber: 4.6 Consensus size: 48
79237776 TATGTGTGCT
* *
79237786 AGTGTAAGACCATGTTTGGGACATGGCATCAGCCATCATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATCATATGAGAGCC
* *
79237834 AATGTAAGACCATGTCTGGGACATGGCATTGGCCA-CATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATCA-TATGAGAGCC
* * * * * * * *
79237882 AGTGTAAGACTATGTCTGGGGCATGGCATTGG-TATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TCATATGAGAGCC
* * * *
79237930 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATCATATGAGAGCC
* * *
79237978 AGTGGAAGACCATGTTTGGAACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
79238007 TGGCAATTCA
Statistics
Matches: 145, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
47 3 0.02
48 141 0.97
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATCATATGAGAGCC
Found at i:79243613 original size:55 final size:54
Alignment explanation
Indices: 79243490--79243624 Score: 162
Period size: 55 Copynumber: 2.5 Consensus size: 54
79243480 GTTTAAGGAT
* * * * *
79243490 ACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGCAAGGAA
1 ACCATGTAAGACCATGCCAAGGCATGACATTGATAACTATTACAAGGCAAAGAA
* * * * *
79243544 ATCATGTAAGACCATGTCAAGACATGACATTGATAAACTATTATAAGGCAAAGAT
1 ACCATGTAAGACCATGCCAAGGCATGACATTGAT-AACTATTACAAGGCAAAGAA
*
79243599 CCCATGTAAGACCATGCCAAGGCATG
1 ACCATGTAAGACCATGCCAAGGCATG
79243625 GCAATGGTGA
Statistics
Matches: 66, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
54 29 0.44
55 37 0.56
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (54 bp):
ACCATGTAAGACCATGCCAAGGCATGACATTGATAACTATTACAAGGCAAAGAA
Found at i:79243661 original size:53 final size:53
Alignment explanation
Indices: 79243484--79243692 Score: 202
Period size: 53 Copynumber: 3.9 Consensus size: 53
79243474 ATTAGGGTTT
* * * *
79243484 AAGGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAG-TTTATAAGGC
* * * * * *
79243538 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATAAACTATTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGT-AAGT-TTATAAGGC
* * * * * *
79243593 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTTATAAGGC
* ** * *
79243646 AAGGATACCACGTAAGATTATGTCAAGACATGGCAATGGTAAGTTTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTTA
79243693 AAAAGGAAAG
Statistics
Matches: 124, Mismatches: 29, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
53 46 0.37
54 37 0.30
55 41 0.33
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTTATAAGGC
Found at i:79246224 original size:27 final size:27
Alignment explanation
Indices: 79246192--79246293 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
79246182 ATTCTGTTAA
*
79246192 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
*
79246219 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTTTGCCAC-AATATCTGTTTCTG
* *
79246246 GTGGCTTTGCCACCATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* * *
79246273 GTGACTCTGTCACAATATCTG
1 GTGGCTTTGCCACAATATCTG
79246294 ATAACTGAGT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.78
28 7 0.11
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGTTTCTG
Done.