Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 237 of 284
Found at i:79246265 original size:54 final size:53
Alignment explanation
Indices: 79246192--79246293 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 53
79246182 ATTCTGTTAA
* *
79246192 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTTTGCCACATTATCTGTATCTGGTGACTATGCCAC-AATATCTGTTCTG
* *
79246246 GTGGCTTTGCCACCA-TATCTGTATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTTTGCCA-CATTATCTGTATCTGGTGACTATGCCACAATATCTG
79246294 ATAACTGAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
53 8 0.19
54 33 0.77
55 2 0.05
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (53 bp):
GTGGCTTTGCCACATTATCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:79246468 original size:6 final size:6
Alignment explanation
Indices: 79246453--79246549 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
79246443 ATTCTGTTAC
* * *
79246453 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
79246502 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTAATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
79246550 AATGTTTCTT
Statistics
Matches: 73, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
5 4 0.05
6 61 0.84
7 6 0.08
8 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:79246481 original size:31 final size:31
Alignment explanation
Indices: 79246430--79246532 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
79246420 TTGCATTCAC
*
79246430 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
79246462 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
79246493 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
79246524 ATTCTGATT
1 ATTCTGATT
79246533 CTAATTCTAG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
31 59 0.89
32 7 0.11
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:79246533 original size:31 final size:31
Alignment explanation
Indices: 79246443--79246565 Score: 151
Period size: 31 Copynumber: 4.0 Consensus size: 31
79246433 CTGATTTTTT
*
79246443 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
79246474 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * * *
79246505 ATTCTGTCACCTAATTCTGATTCTGATTCTA
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
79246536 ATTCTAGTT--CTGATAATGTTTCTTATTCTG
1 ATTCT-GTTACCTGATACTGATTCTGATTCTG
79246566 TAATGGGTTA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
30 15 0.19
31 62 0.78
32 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:79248472 original size:25 final size:27
Alignment explanation
Indices: 79248435--79248487 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
79248425 TCAAACATGC
79248435 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
79248461 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
79248487 A
1 A
79248488 AAACAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:79250008 original size:32 final size:32
Alignment explanation
Indices: 79249971--79250035 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
79249961 AATGCTTACC
79249971 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
79250003 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
79250035 A
1 A
79250036 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:79251533 original size:27 final size:27
Alignment explanation
Indices: 79251503--79251616 Score: 149
Period size: 27 Copynumber: 4.2 Consensus size: 27
79251493 TTAGTTTACC
* *
79251503 AAATTACCAAAATA-CCTCAGGTTTGTA
1 AAATTACCAAAATACCCT-TGGTTTATA
*
79251530 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
*
79251557 AAATCACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
79251584 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
79251611 AAATTA
1 AAATTA
79251617 TCGCAATACC
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 75 0.96
28 3 0.04
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTATA
Found at i:79251642 original size:27 final size:27
Alignment explanation
Indices: 79251612--79252112 Score: 723
Period size: 27 Copynumber: 18.6 Consensus size: 27
79251602 TGGTTTGTAA
* *
79251612 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79251639 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79251666 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79251693 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79251720 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79251747 AATTACCCAAATACCCCTGTACGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * **
79251774 AATTATCGCAATACCCCCATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79251801 AATTACCAAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79251828 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79251855 AATTATCGAAATACCCCTGGAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79251882 AATTATCGAAATACCCCTGGAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
79251909 AATTATCGCAATACCCCTATATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79251936 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79251963 AATTACCAAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79251990 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79252017 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79252044 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
79252071 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79252098 AATTATCGAGATACC
1 AATTACCGAAATACC
79252113 TTGTGGGGTA
Statistics
Matches: 423, Mismatches: 51, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 423 1.00
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:79252609 original size:22 final size:22
Alignment explanation
Indices: 79252557--79252621 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
79252547 TTAAAGCCTT
* *
79252557 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
79252579 CT-ACATATGACTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
79252601 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
79252622 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:79252810 original size:27 final size:27
Alignment explanation
Indices: 79252780--79252881 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
79252770 ATTCTGTTAA
*
79252780 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
*
79252807 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTTTGCCAC-AATATCTGTTTCTG
* *
79252834 GTGGCTTTGCCACCATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* * *
79252861 GTGACTCTGTCACAATATCTG
1 GTGGCTTTGCCACAATATCTG
79252882 ATAACTGAGT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.78
28 7 0.11
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGTTTCTG
Found at i:79252838 original size:54 final size:53
Alignment explanation
Indices: 79252780--79252881 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 53
79252770 ATTCTGTTAA
* *
79252780 GTGGCTTTGCCA-CATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTTTGCCACCA-TATCTGTATCTGGTGACTATGCCAC-AATATCTGTTCTG
* *
79252834 GTGGCTTTGCCACCATATCTGTATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTTTGCCACCATATCTGTATCTGGTGACTATGCCACAATATCTG
79252882 ATAACTGAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
53 8 0.19
54 33 0.77
55 2 0.05
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (53 bp):
GTGGCTTTGCCACCATATCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:79253056 original size:6 final size:6
Alignment explanation
Indices: 79253041--79253137 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
79253031 ATTCTGTTAC
* * *
79253041 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
79253090 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTAATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
79253138 AATGTTTCTT
Statistics
Matches: 73, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
5 4 0.05
6 61 0.84
7 6 0.08
8 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:79253069 original size:31 final size:31
Alignment explanation
Indices: 79253018--79253120 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
79253008 TTGCATTCAC
*
79253018 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
79253050 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
79253081 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
79253112 ATTCTGATT
1 ATTCTGATT
79253121 CTAATTCTAG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
31 59 0.89
32 7 0.11
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:79253121 original size:31 final size:31
Alignment explanation
Indices: 79253031--79253153 Score: 151
Period size: 31 Copynumber: 4.0 Consensus size: 31
79253021 CTGATTTTTT
*
79253031 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
79253062 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * * *
79253093 ATTCTGTCACCTAATTCTGATTCTGATTCTA
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
79253124 ATTCTAGTT--CTGATAATGTTTCTTATTCTG
1 ATTCT-GTTACCTGATACTGATTCTGATTCTG
79253154 TAATGGGTTA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
30 15 0.19
31 62 0.78
32 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:79255060 original size:25 final size:27
Alignment explanation
Indices: 79255023--79255075 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
79255013 TCAAACATGC
79255023 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
79255049 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
79255075 A
1 A
79255076 AAACAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:79256596 original size:32 final size:32
Alignment explanation
Indices: 79256559--79256623 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
79256549 AATGCTTACC
79256559 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
79256591 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
79256623 A
1 A
79256624 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:79258121 original size:27 final size:27
Alignment explanation
Indices: 79258091--79258204 Score: 149
Period size: 27 Copynumber: 4.2 Consensus size: 27
79258081 TTAGTTTACC
* *
79258091 AAATTACCAAAATA-CCTCAGGTTTGTA
1 AAATTACCAAAATACCCT-TGGTTTATA
*
79258118 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
*
79258145 AAATCACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
79258172 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
79258199 AAATTA
1 AAATTA
79258205 TCGCAATACC
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 75 0.96
28 3 0.04
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTATA
Found at i:79258230 original size:27 final size:27
Alignment explanation
Indices: 79258200--79258258 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
79258190 TGGTTTGTAA
* * *
79258200 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
79258227 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
79258254 AATTA
1 AATTA
79258259 NNNNNNNNNN
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:79264756 original size:32 final size:32
Alignment explanation
Indices: 79264719--79264783 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
79264709 AATGCTTACC
79264719 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
79264751 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
79264783 A
1 A
79264784 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:79266282 original size:27 final size:27
Alignment explanation
Indices: 79266252--79266379 Score: 139
Period size: 27 Copynumber: 4.7 Consensus size: 27
79266242 TTAGTTTACC
*
79266252 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
** *
79266279 AAATTACTGAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* *
79266306 AAATCACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* * * *
79266333 AAATCAACAAAATACTCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* **
79266360 AAATTATCGCAATACCCCTG
1 AAATTACCAAAATACCCCTG
79266380 TAGGGTAGAA
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:79266391 original size:27 final size:27
Alignment explanation
Indices: 79266361--79266905 Score: 734
Period size: 27 Copynumber: 20.3 Consensus size: 27
79266351 TGGTTTGTAA
* *
79266361 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79266388 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79266415 AATTACCG-AATACCCCTGTAAGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79266441 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
79266468 AATTACCGGTATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
79266495 AATTATCGAAAAACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79266522 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
79266549 AATTATCGCAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79266576 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79266603 AATTACCGGAATTCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79266630 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79266657 AATTACCGAAATACCCCTATAGGGTTG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
79266684 AATTATTGCAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79266711 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79266738 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79266765 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79266792 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79266819 AATTACCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
79266846 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
79266873 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
79266899 AATTACC
1 AATTACC
79266906 ATTTTGGCCC
Statistics
Matches: 451, Mismatches: 66, Indels: 3
0.87 0.13 0.01
Matches are distributed among these distances:
26 40 0.09
27 411 0.91
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:79267379 original size:22 final size:22
Alignment explanation
Indices: 79267336--79267400 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
79267326 TTAAAGCCTT
* *
79267336 CTGATTATGGCTTTGT-CTCAAC
1 CTGAATATGGCTCTGTGC-CAAC
79267358 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-ATATGGCTCTGTGCCAAC
* *
79267380 CTGATTATGGCTGTGTGCCAA
1 CTGAATATGGCTCTGTGCCAA
79267401 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 1 0.03
22 33 0.92
23 2 0.06
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGAATATGGCTCTGTGCCAAC
Found at i:79267589 original size:27 final size:27
Alignment explanation
Indices: 79267559--79267660 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
79267549 ATTCTGTTAA
* *
79267559 GTGGCTGTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
79267586 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
79267613 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
79267640 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
79267661 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:79267830 original size:19 final size:19
Alignment explanation
Indices: 79267808--79267865 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
79267798 TTCTGATTTT
79267808 TGATTCTGTTACTTGATAC
1 TGATTCTGTTACTTGATAC
79267827 TGATTCTG--A-TT--T--
1 TGATTCTGTTACTTGATAC
*
79267839 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACTTGATAC
79267858 TGATTCTG
1 TGATTCTG
79267866 ATTCTAATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 14
0.67 0.02 0.30
Matches are distributed among these distances:
12 8 0.26
14 2 0.06
15 1 0.03
16 2 0.06
17 2 0.06
19 16 0.52
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.48
Consensus pattern (19 bp):
TGATTCTGTTACTTGATAC
Found at i:79267835 original size:6 final size:6
Alignment explanation
Indices: 79267797--79267907 Score: 75
Period size: 6 Copynumber: 17.8 Consensus size: 6
79267787 TTGCATTCAC
* * *
79267797 ATTCTG ATTTTTG ATTCTG -TTACTTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
79267847 -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
79267897 ATTCTG ATTCT
1 ATTCTG ATTCT
79267908 AGTTTTGATA
Statistics
Matches: 81, Mismatches: 14, Indels: 20
0.70 0.12 0.17
Matches are distributed among these distances:
5 5 0.06
6 60 0.74
7 13 0.16
8 3 0.04
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:79267843 original size:31 final size:31
Alignment explanation
Indices: 79267797--79267907 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
79267787 TTGCATTCAC
* *
79267797 ATTCTGATTTTTGATTCTGTTACTTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
79267829 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * *
79267860 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
79267891 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
79267908 AGTTTTGATA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 65 0.90
32 7 0.10
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:79274011 original size:5 final size:5
Alignment explanation
Indices: 79274001--79274193 Score: 386
Period size: 5 Copynumber: 38.6 Consensus size: 5
79273991 ATACTTAAGA
79274001 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
79274051 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
79274101 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
79274151 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATA
79274194 ATAATTAAAT
Statistics
Matches: 188, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 188 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATATT
Found at i:79276203 original size:19 final size:20
Alignment explanation
Indices: 79276179--79276216 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79276169 GGTACCACTA
79276179 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
79276198 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
79276217 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:79276512 original size:46 final size:45
Alignment explanation
Indices: 79276445--79276612 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 45
79276435 CGCCCCTAAG
*
79276445 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* *
79276491 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* ** * *
79276538 CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAAA
* *
79276584 TGAACTCGAACTCAACTCAATGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
79276613 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 53 0.53
47 28 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:79276556 original size:93 final size:93
Alignment explanation
Indices: 79276446--79276616 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
79276436 GCCCCTAAGT
** * *
79276446 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
79276511 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
79276539 GAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
*
79276604 TGAGTTCGGATGC
66 CGAGTTCGGATGC
79276617 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:79279402 original size:14 final size:14
Alignment explanation
Indices: 79279383--79279409 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
79279373 TTGTTTTTGG
79279383 TTTGGTTTATTTTT
1 TTTGGTTTATTTTT
79279397 TTTGGTTTATTTT
1 TTTGGTTTATTTT
79279410 GGATTGGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.00, G:0.15, T:0.78
Consensus pattern (14 bp):
TTTGGTTTATTTTT
Found at i:79284628 original size:40 final size:40
Alignment explanation
Indices: 79284439--79284664 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
79284429 TTGAATGATG
* * * *
79284439 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
79284479 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
79284519 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
79284559 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79284599 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
79284640 -CCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79284665 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 156 0.93
41 10 0.06
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79284682 original size:80 final size:79
Alignment explanation
Indices: 79284492--79284697 Score: 206
Period size: 80 Copynumber: 2.6 Consensus size: 79
79284482 GGACTAAGAT
** *
79284492 CCGAAGGCATTTGTGCGAGAT-ACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGG-TTAA-ATCCCGAAGGCATTTGTGCGAGATAC
* *
79284555 TAATTCCGGGCTAAGTC
63 TAATACCAGGCTAAGTC
** * *
79284572 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTGTGCGAGA-TACT
*
79284636 -ATAACCAGGCTATGTC
64 AAT-ACCAGGCTAAGTC
* *
79284652 CCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
79284698 TACGTGATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
79 20 0.18
80 87 0.80
81 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAA
TACCAGGCTAAGTC
Found at i:79290180 original size:47 final size:46
Alignment explanation
Indices: 79289934--79290202 Score: 243
Period size: 47 Copynumber: 5.8 Consensus size: 46
79289924 TGGGTAAGAT
* *
79289934 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCATACCTC-AA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTTCAT--CTCGTA
* *
79289981 GTCGATGCCATGTCCCAGGCATGGTCTTACACT-GACTATCATCTCGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAG-CT-TCATCTCGTA
* *
79290029 GCCAATG-CATGTCCCAGACATGTTTTACACT-GCCTTACATCTCG-A
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAG-CTT-CATCTCGTA
* *
79290074 GGCCGATG-CATGTCCCAGACATGTCTTACACTAGCACTCATCTTAGT-
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTAGC-TTCATC-TCGTA
* *
79290121 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTCCATAAT-GTG
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTT-CAT-CTCGTA
*
79290169 GCCGATG-CATGTCTCAGACATGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGC
79290203 ACACACAAGT
Statistics
Matches: 192, Mismatches: 15, Indels: 31
0.81 0.06 0.13
Matches are distributed among these distances:
45 2 0.01
46 74 0.39
47 82 0.43
48 30 0.16
49 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTCATCTCGTA
Found at i:79290187 original size:94 final size:93
Alignment explanation
Indices: 79289933--79290204 Score: 299
Period size: 94 Copynumber: 2.9 Consensus size: 93
79289923 ATGGGTAAGA
* * *
79289933 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCATACCTCAAGTCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GCTTCATA-CTGAGGCCGATG-CATGTCCC
* *
79289997 AGGCATGGTCTTACACT-G-ACTATCATCTCG
63 AGACAT-GTCTTACACTAGCACTATCATCTAG
* *
79290027 TAGCCAATG-CATGTCCCAGACAT-GTTTTACACTGCCTTACAT-CTCGAGGCCGATGCATGTCC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTG-CTT-CATACT-GAGGCCGATGCATGTCC
79290089 CAGACATGTCTTACACTAGCAC--TCATCTTAG
62 CAGACATGTCTTACACTAGCACTATCATC-TAG
* * *
79290120 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTCCATAATGTGGCCGATGCATGTCTCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GCTT-CATACTGAGGCCGATGCATGTCCCA
79290185 GACATGTCTTACACTAGCAC
64 GACATGTCTTACACTAGCAC
79290205 ACACAAGTGA
Statistics
Matches: 153, Mismatches: 13, Indels: 24
0.81 0.07 0.13
Matches are distributed among these distances:
92 22 0.14
93 43 0.28
94 77 0.50
95 11 0.07
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGCTTCATACTGAGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACTATCATCTAG
Found at i:79290197 original size:140 final size:140
Alignment explanation
Indices: 79289934--79290199 Score: 339
Period size: 140 Copynumber: 1.9 Consensus size: 140
79289924 TGGGTAAGAT
*
79289934 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATACCTCAAGTCGATGCCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATA-CTCAAGTCGATGCCATGTCCCAG
* * *
79289999 GCATGGTCTTACACTGACTATCATCTCGTAGCCAATGCATGTCCCAGACATGTTTTACACTGCCT
65 ACATGGTCTTACACTGACTATCATATCGTAGCCAATGCATGTCCCAGACATGTCTTACACTGCCT
79290064 TACATCTCGAG
130 TACATCTCGAG
*
79290075 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CT-TAGTGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACTCATACTCAAGT--CGATGCCATGTCC
* * *
79290136 CAGACATGGTCTTACACT-AGCT-TCCATAAT-GTGGCCGATGCATGTCTCAGACATGTCTTACA
62 CAGACATGGTCTTACACTGA-CTAT-CAT-ATCGTAGCCAATGCATGTCCCAGACATGTCTTACA
79290198 CT
124 CT
79290200 AGCACACACA
Statistics
Matches: 110, Mismatches: 8, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
138 3 0.03
139 14 0.13
140 80 0.73
141 13 0.12
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (140 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATACTCAAGTCGATGCCATGTCCCAGA
CATGGTCTTACACTGACTATCATATCGTAGCCAATGCATGTCCCAGACATGTCTTACACTGCCTT
ACATCTCGAG
Found at i:79290930 original size:12 final size:12
Alignment explanation
Indices: 79290913--79290937 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79290903 CAAAAATGTA
79290913 AAAATCATCAAG
1 AAAATCATCAAG
79290925 AAAATCATCAAG
1 AAAATCATCAAG
79290937 A
1 A
79290938 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:79291470 original size:188 final size:188
Alignment explanation
Indices: 79291153--79291528 Score: 716
Period size: 188 Copynumber: 2.0 Consensus size: 188
79291143 CTCCCTAAGG
*
79291153 GTCTATTTGCCCCTTAAAGACCCCCAATTTAAGTCCTCTAGCTAATTGACACATTTGGGCACTAG
1 GTCTATTTGACCCTTAAAGACCCCCAATTTAAGTCCTCTAGCTAATTGACACATTTGGGCACTAG
*
79291218 TTTGCAACTTTTGCCTTTTATGCGATTTAGTTCTTTTTCACAATTGAGCAAGCCATCGCTAAAAT
66 TTTGCAACTTTTGCCTTTTATGCGATTTAGTCCTTTTTCACAATTGAGCAAGCCATCGCTAAAAT
*
79291283 TAATTCACCAAATTTTCCATACACTAATATTAACATGTTATAACCCCAAAATAATAAT
131 TAATTCACCAAATTTTCCATACACTAATATTAACATGCTATAACCCCAAAATAATAAT
*
79291341 GTCTATTTGACCTTTAAAGACCCCCAATTTAAGTCCTCTAGCTAATTGACACATTTGGGCACTAG
1 GTCTATTTGACCCTTAAAGACCCCCAATTTAAGTCCTCTAGCTAATTGACACATTTGGGCACTAG
79291406 TTTGCAACTTTTGCCTTTTATGCGATTTAGTCCTTTTTCACAATTGAGCAAGCCATCGCTAAAAT
66 TTTGCAACTTTTGCCTTTTATGCGATTTAGTCCTTTTTCACAATTGAGCAAGCCATCGCTAAAAT
79291471 TAATTCACCAAATTTTCCATACACTAATATTAACATGCTATAACCCCAAAATAATAAT
131 TAATTCACCAAATTTTCCATACACTAATATTAACATGCTATAACCCCAAAATAATAAT
79291529 AAAATAATTT
Statistics
Matches: 184, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
188 184 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.35
Consensus pattern (188 bp):
GTCTATTTGACCCTTAAAGACCCCCAATTTAAGTCCTCTAGCTAATTGACACATTTGGGCACTAG
TTTGCAACTTTTGCCTTTTATGCGATTTAGTCCTTTTTCACAATTGAGCAAGCCATCGCTAAAAT
TAATTCACCAAATTTTCCATACACTAATATTAACATGCTATAACCCCAAAATAATAAT
Found at i:79293439 original size:17 final size:17
Alignment explanation
Indices: 79293417--79293459 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
79293407 CACAGGCTGC
79293417 CACATGGCCATGTGCCA
1 CACATGGCCATGTGCCA
79293434 CACATGGCCATGTGCCA
1 CACATGGCCATGTGCCA
*
79293451 CACACGGCC
1 CACATGGCC
79293460 TTCTCACATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.23, C:0.40, G:0.23, T:0.14
Consensus pattern (17 bp):
CACATGGCCATGTGCCA
Found at i:79296260 original size:41 final size:38
Alignment explanation
Indices: 79296212--79296326 Score: 106
Period size: 41 Copynumber: 2.9 Consensus size: 38
79296202 CTTCGACCTT
79296212 GATTCGATGAGACACTGGGTGTCACTATTGTACTTCGAATA
1 GATTCGATGAGACACTGGGTGTCAC--TT-TACTTCGAATA
** ** **
79296253 GATTCGATGAGGTACTGGGTACCACTTTACTTCGGCTA
1 GATTCGATGAGACACTGGGTGTCACTTTACTTCGAATA
** *
79296291 G-GCCGATGAGACACTGGGTGTCAACTTTGCTTCGAA
1 GATTCGATGAGACACTGGGTGTC-ACTTTACTTCGAA
79296327 CTATCCAATG
Statistics
Matches: 58, Mismatches: 15, Indels: 5
0.74 0.19 0.06
Matches are distributed among these distances:
37 15 0.26
38 20 0.34
39 2 0.03
41 21 0.36
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (38 bp):
GATTCGATGAGACACTGGGTGTCACTTTACTTCGAATA
Found at i:79296694 original size:26 final size:25
Alignment explanation
Indices: 79296637--79296695 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
79296627 AAGTATGAGA
* *
79296637 AAGTGAAATTATGAATCGAAATATG
1 AAGTGAAATTATGAATCAAAATAAG
*
79296662 AATTGAAATTGA-GATATCAAAATAAG
1 AAGTGAAATT-ATGA-ATCAAAATAAG
79296688 AAGTGAAA
1 AAGTGAAA
79296696 ATAGGATGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.53, C:0.03, G:0.19, T:0.25
Consensus pattern (25 bp):
AAGTGAAATTATGAATCAAAATAAG
Found at i:79299891 original size:27 final size:27
Alignment explanation
Indices: 79299860--79300037 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
79299850 TAAATTGTAC
79299860 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
79299887 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79299913 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
79299941 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
79299969 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79299996 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
79300023 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79300038 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:79299974 original size:82 final size:81
Alignment explanation
Indices: 79299861--79300016 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
79299851 AAATTGTACA
* *
79299861 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
79299925 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
79299942 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
79300007 TGCGAGTTGA
65 TGCGAATTGA
79300017 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79300028 original size:82 final size:81
Alignment explanation
Indices: 79299857--79300037 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
79299847 GATTAAATTG
* *
79299857 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
79299922 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
79299938 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
79300002 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
79300020 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
79300038 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:79317724 original size:34 final size:35
Alignment explanation
Indices: 79317665--79317731 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
79317655 ATAACACCAG
* *
79317665 AAAATATTTTTCAGTAAATTATTTTACAGAAAAGT
1 AAAACATTTTTCAGTAAATCATTTTACAGAAAAGT
* *
79317700 AAAACATTTTTTAG-AAATCATTTTACGGAAAA
1 AAAACATTTTTCAGTAAATCATTTTACAGAAAA
79317732 CATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.37
Consensus pattern (35 bp):
AAAACATTTTTCAGTAAATCATTTTACAGAAAAGT
Found at i:79326006 original size:24 final size:24
Alignment explanation
Indices: 79325952--79326008 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 24
79325942 TAGATACTTA
*
79325952 ATTAAAATAAAAAAACACTCAAAT
1 ATTAAAATTAAAAAACACTCAAAT
* * *
79325976 ATT--AATTTAAAAATACTTAAAT
1 ATTAAAATTAAAAAACACTCAAAT
79325998 ATTAAAATTAA
1 ATTAAAATTAA
79326009 TATTAAAACT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
22 18 0.69
24 8 0.31
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (24 bp):
ATTAAAATTAAAAAACACTCAAAT
Found at i:79335970 original size:40 final size:40
Alignment explanation
Indices: 79335703--79335970 Score: 446
Period size: 40 Copynumber: 6.7 Consensus size: 40
79335693 CAAACACATG
* * * *
79335703 TGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
* *
79335743 TGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
* *
79335783 TGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
*
79335823 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
79335863 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
*
79335903 TGCCTTCGGGTCTTAGCTCGGATATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
79335943 TGCCTTCGGGTCTTAGCCCGGATATATT
1 TGCCTTCGGGTCTTAGCCCGGATATATT
79335971 CCAATGCTCA
Statistics
Matches: 214, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
Found at i:79337436 original size:209 final size:209
Alignment explanation
Indices: 79337076--79337492 Score: 816
Period size: 209 Copynumber: 2.0 Consensus size: 209
79337066 TATTATTTAA
79337076 TTATTTATCACCCTAGATATTATTAGCTAAATAGATCAATTGTACATATATACCACCAAGACCGT
1 TTATTTATCACCCTAGATATTATTAGCTAAATAGATCAATTGTACATATATACCACCAAGACCGT
79337141 ACGTAATAATCTTACTTATACATAACACTACTCAAATTCTTCGAAAGCATACTAACAAAAATATC
66 ACGTAATAATCTTACTTATACATAACACTACTCAAATTCTTCGAAAGCATACTAACAAAAATATC
79337206 ATGTACTATGACGAACCTTTAGGAAATCAAGCACCTAATTTATCCATTTCAAAACACCCAATCGG
131 ATGTACTATGACGAACCTTTAGGAAATCAAGCACCTAATTTATCCATTTCAAAACACCCAATCGG
79337271 CATTTGCTCAAGAC
196 CATTTGCTCAAGAC
*
79337285 TTATTTATCACCCTAGATATTATTAGCTAAATAGATCAATTGTACATATATACCGCCAAGACCGT
1 TTATTTATCACCCTAGATATTATTAGCTAAATAGATCAATTGTACATATATACCACCAAGACCGT
79337350 ACGTAATAATCTTACTTATACATAACACTACTCAAATTCTTCGAAAGCATACTAACAAAAATATC
66 ACGTAATAATCTTACTTATACATAACACTACTCAAATTCTTCGAAAGCATACTAACAAAAATATC
*
79337415 ATGTACTATGCCGAACCTTTAGGAAATCAAGCACCTAATTTATCCATTTCAAAACACCCAATCGG
131 ATGTACTATGACGAACCTTTAGGAAATCAAGCACCTAATTTATCCATTTCAAAACACCCAATCGG
79337480 CATTTGCTCAAGA
196 CATTTGCTCAAGA
79337493 AATTAAGCAA
Statistics
Matches: 206, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
209 206 1.00
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (209 bp):
TTATTTATCACCCTAGATATTATTAGCTAAATAGATCAATTGTACATATATACCACCAAGACCGT
ACGTAATAATCTTACTTATACATAACACTACTCAAATTCTTCGAAAGCATACTAACAAAAATATC
ATGTACTATGACGAACCTTTAGGAAATCAAGCACCTAATTTATCCATTTCAAAACACCCAATCGG
CATTTGCTCAAGAC
Found at i:79341662 original size:403 final size:403
Alignment explanation
Indices: 79340915--79341720 Score: 1540
Period size: 403 Copynumber: 2.0 Consensus size: 403
79340905 AGAAACTTGG
79340915 CCGAGCGAAACCTCTATCCGTCAATTCTTGCAGCTGAGCTTTCAACTCTTTTAACTCGGTTGGTG
1 CCGAGCGAAACCTCTATCCGTCAATTCTTGCAGCTGAGCTTTCAACTCTTTTAACTCGGTTGGTG
79340980 CCATACGATACGGAGCTATCGAGATCGGCGTAGTCCCAGGTACAAGCTCAATACCAAACTCTACC
66 CCATACGATACGGAGCTATCGAGATCGGCGTAGTCCCAGGTACAAGCTCAATACCAAACTCTACC
79341045 TCCCGAACAGGTGGTAAACCCGGTAATTCTTCCGGAAAAACATCCGGGTATTCACAAACCACCGG
131 TCCCGAACAGGTGGTAAACCCGGTAATTCTTCCGGAAAAACATCCGGGTATTCACAAACCACCGG
* *
79341110 CACAGATTCGGGTTTCTTTTCTAATTCTTTGTCATCAAGTACATACGCAAGGTATGCTTCGCACC
196 CACAGATTCGGGTTTCTTTTCTAATTCTTTGCCATCAAGCACATACGCAAGGTATGCTTCGCACC
*
79341175 CTTTTCTTACATATTTCTGTGCCAACATTGCTGATATTACAGCTGGCACCCCCTCCAAGTCCGCA
261 CTTTTCTCACATATTTCTGTGCCAACATTGCTGATATTACAGCTGGCACCCCCTCCAAGTCCGCA
79341240 GACTCAATTCGGACTACTTCGTTATTTGCGCACCTCAAATCAATAGTCTTGCTCTTGCAATTCAC
326 GACTCAATTCGGACTACTTCGTTATTTGCGCACCTCAAATCAATAGTCTTGCTCTTGCAATTCAC
79341305 AATCGCATCATGC
391 AATCGCATCATGC
79341318 CCGAGCGAAACCTCTATCCGTCAATTCTTGCAGCTGAGCTTTCAACTCTTTTAACTCGGTTGGTG
1 CCGAGCGAAACCTCTATCCGTCAATTCTTGCAGCTGAGCTTTCAACTCTTTTAACTCGGTTGGTG
79341383 CCATACGATACGGAGCTATCGAGATCGGCGTAGTCCCAGGTACAAGCTCAATACCAAACTCTACC
66 CCATACGATACGGAGCTATCGAGATCGGCGTAGTCCCAGGTACAAGCTCAATACCAAACTCTACC
79341448 TCCCGAACAGGTGGTAAACCCGGTAATTCTTCCGGAAAAACATCCGGGTATTCACAAACCACCGG
131 TCCCGAACAGGTGGTAAACCCGGTAATTCTTCCGGAAAAACATCCGGGTATTCACAAACCACCGG
*
79341513 CACAGATTCGGGTTTCTTTTCTAATTCTTTGCCATCAAGCACATATGCAAGGTATGCTTCGCACC
196 CACAGATTCGGGTTTCTTTTCTAATTCTTTGCCATCAAGCACATACGCAAGGTATGCTTCGCACC
* * *
79341578 CTTTTCTCACATATTTCTGTGCCAACATTGCTGATATTACAGCTGGTATCCCCTCCAAGTCCGCG
261 CTTTTCTCACATATTTCTGTGCCAACATTGCTGATATTACAGCTGGCACCCCCTCCAAGTCCGCA
*
79341643 GACTCAATTCGGACTACTTCGTTGTTTGCGCACCTCAAATCAATAGTCTTGCTCTTGCAATTCAC
326 GACTCAATTCGGACTACTTCGTTATTTGCGCACCTCAAATCAATAGTCTTGCTCTTGCAATTCAC
79341708 AATCGCATCATGC
391 AATCGCATCATGC
79341721 GCGGTCAACC
Statistics
Matches: 395, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
403 395 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (403 bp):
CCGAGCGAAACCTCTATCCGTCAATTCTTGCAGCTGAGCTTTCAACTCTTTTAACTCGGTTGGTG
CCATACGATACGGAGCTATCGAGATCGGCGTAGTCCCAGGTACAAGCTCAATACCAAACTCTACC
TCCCGAACAGGTGGTAAACCCGGTAATTCTTCCGGAAAAACATCCGGGTATTCACAAACCACCGG
CACAGATTCGGGTTTCTTTTCTAATTCTTTGCCATCAAGCACATACGCAAGGTATGCTTCGCACC
CTTTTCTCACATATTTCTGTGCCAACATTGCTGATATTACAGCTGGCACCCCCTCCAAGTCCGCA
GACTCAATTCGGACTACTTCGTTATTTGCGCACCTCAAATCAATAGTCTTGCTCTTGCAATTCAC
AATCGCATCATGC
Found at i:79344576 original size:61 final size:62
Alignment explanation
Indices: 79344499--79344622 Score: 196
Period size: 61 Copynumber: 2.0 Consensus size: 62
79344489 AGCAAGGAAT
79344499 TCCAGCATAAACAAAGAATAACACACATTTAGCT-ACGGAATATTTCACAATACGCAATTTA
1 TCCAGCATAAACAAAGAATAACACACATTTAGCTAACGGAATATTTCACAATACGCAATTTA
** * *
79344560 TCCAGCATGCACAAAGAATAGCACACATTTAGCTAAACGGAATATTTCATAATACGCAATTTA
1 TCCAGCATAAACAAAGAATAACACACATTTAGCT-AACGGAATATTTCACAATACGCAATTTA
79344623 CCGATATCAA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
61 31 0.54
63 26 0.46
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.25
Consensus pattern (62 bp):
TCCAGCATAAACAAAGAATAACACACATTTAGCTAACGGAATATTTCACAATACGCAATTTA
Found at i:79344815 original size:89 final size:90
Alignment explanation
Indices: 79344700--79344879 Score: 353
Period size: 90 Copynumber: 2.0 Consensus size: 90
79344690 AAGGCCGGTA
79344700 GCTCGTTTATCAACTGAGCGAACATTTA-TTGTAAGGGCTCGATTAAATTCAACACATACGTAAC
1 GCTCGTTTATCAACTGAGCGAACATTTATTTGTAAGGGCTCGATTAAATTCAACACATACGTAAC
79344764 ATATCCCCATATTGGGATGTTTTTC
66 ATATCCCCATATTGGGATGTTTTTC
79344789 GCTCGTTTATCAACTGAGCGAACATTTATTTGTAAGGGCTCGATTAAATTCAACACATACGTAAC
1 GCTCGTTTATCAACTGAGCGAACATTTATTTGTAAGGGCTCGATTAAATTCAACACATACGTAAC
79344854 ATATCCCCATATTGGGATGTTTTTC
66 ATATCCCCATATTGGGATGTTTTTC
79344879 G
1 G
79344880 AGTATTCGCT
Statistics
Matches: 90, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
89 28 0.31
90 62 0.69
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (90 bp):
GCTCGTTTATCAACTGAGCGAACATTTATTTGTAAGGGCTCGATTAAATTCAACACATACGTAAC
ATATCCCCATATTGGGATGTTTTTC
Found at i:79345062 original size:40 final size:39
Alignment explanation
Indices: 79344964--79345146 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 39
79344954 TCCTCGTTCA
* * * * *
79344964 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
79345003 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
79345042 GAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
79345082 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
79345123 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
79345147 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
39 38 0.31
40 77 0.63
41 8 0.07
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:79348091 original size:40 final size:40
Alignment explanation
Indices: 79348036--79348217 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
79348026 TATTCGAATG
* *
79348036 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
79348076 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
79348116 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
79348156 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
79348196 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
79348218 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.11
40 115 0.88
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:79353811 original size:9 final size:9
Alignment explanation
Indices: 79353797--79353965 Score: 150
Period size: 9 Copynumber: 18.9 Consensus size: 9
79353787 TAAGTATAAT
79353797 TAAGTTATG
1 TAAGTTATG
79353806 TAAGTTATG
1 TAAGTTATG
* * *
79353815 ATATGATATC
1 -TAAGTTATG
*
79353825 T-ATTTATG
1 TAAGTTATG
79353833 T-A-TTATG
1 TAAGTTATG
79353840 TAAGTTATG
1 TAAGTTATG
*
79353849 TGAGTTATG
1 TAAGTTATG
*
79353858 TAAGTTATA
1 TAAGTTATG
*
79353867 T-AGCTATG
1 TAAGTTATG
79353875 TAAGTTATG
1 TAAGTTATG
* *
79353884 TGAGTTATT
1 TAAGTTATG
79353893 TAAGTTATG
1 TAAGTTATG
* *
79353902 ATATGATATATA
1 -TAAG-T-TATG
79353914 TAAGTTAT-
1 TAAGTTATG
79353922 TAAGTTATG
1 TAAGTTATG
79353931 TAAGTTATG
1 TAAGTTATG
*
79353940 TGAGTTATG
1 TAAGTTATG
*
79353949 TGAGTTATG
1 TAAGTTATG
79353958 TAAGTTAT
1 TAAGTTAT
79353966 TTGAATCAAC
Statistics
Matches: 130, Mismatches: 22, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
7 6 0.05
8 20 0.15
9 87 0.67
10 10 0.08
11 4 0.03
12 3 0.02
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:79353882 original size:35 final size:35
Alignment explanation
Indices: 79353836--79353965 Score: 136
Period size: 35 Copynumber: 3.6 Consensus size: 35
79353826 ATTTATGTAT
* *
79353836 TATGTAAGTTATGTGAGTTATGTAAGTTATATAGC
1 TATGTAAGTTATGTAAGTTATGTAAGTTATATAGA
* *
79353871 TATGTAAGTTATGTGAGTTATTTAAGTTATGATATGATA
1 TATGTAAGTTATGTAAGTTATGTAAGTTAT-ATA-G--A
* * *
79353910 TATATAAGTTAT-TAAGTTATGTAAGTTATGTGAGT
1 TATGTAAGTTATGTAAGTTATGTAAGTTATAT-AGA
*
79353945 TATGTGAGTTATGTAAGTTAT
1 TATGTAAGTTATGTAAGTTAT
79353966 TTGAATCAAC
Statistics
Matches: 80, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
35 39 0.49
36 11 0.14
37 3 0.04
38 16 0.20
39 11 0.14
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.45
Consensus pattern (35 bp):
TATGTAAGTTATGTAAGTTATGTAAGTTATATAGA
Found at i:79356928 original size:19 final size:19
Alignment explanation
Indices: 79356901--79356941 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
79356891 GATTTGGGAA
*
79356901 AAAATTTAGGGATTAGGGG
1 AAAAGTTAGGGATTAGGGG
*
79356920 AAAAGTTAGGGATTTGGGG
1 AAAAGTTAGGGATTAGGGG
79356939 AAA
1 AAA
79356942 TTTTGTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.37, T:0.24
Consensus pattern (19 bp):
AAAAGTTAGGGATTAGGGG
Found at i:79357460 original size:75 final size:75
Alignment explanation
Indices: 79357248--79357463 Score: 183
Period size: 73 Copynumber: 2.9 Consensus size: 75
79357238 TTTATAGAAG
* * * ** *
79357248 CGCCACTAAATACAAAGCATAAAACGGCGCCGTTTTGGAAACACTTAACACATATTTGTGGCGTT
1 CGCCACTAAAAACAAAGCATAAAACGGTGCTGTTTTGCTAACACTTAACACATATTTGCGGCGTT
***
79357313 TTGGGCAAAA
66 TTTAACAAAA
* * * * * * * * *
79357323 CGCCACTAATAACAAGGC--CAAATGGTG-TCG-TTT-CTTGAACTCCTCATACATATTTGCTGC
1 CGCCACTAAAAACAAAGCATAAAACGGTGCT-GTTTTGC-T-AACACTTAACACATATTTGCGGC
79357383 GTTTTTAACAAAGA
63 GTTTTTAACAAA-A
*
79357397 -TCCACTAAAAACAAAGCATAAAACGGTGCTGTTTTGCTAACACTTAACACATATTTGCGGCGTT
1 CGCCACTAAAAACAAAGCATAAAACGGTGCTGTTTTGCTAACACTTAACACATATTTGCGGCGTT
79357461 TTT
66 TTT
79357464 GTCTAAAACG
Statistics
Matches: 104, Mismatches: 28, Indels: 18
0.69 0.19 0.12
Matches are distributed among these distances:
72 3 0.03
73 47 0.45
74 1 0.01
75 47 0.45
76 5 0.05
77 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (75 bp):
CGCCACTAAAAACAAAGCATAAAACGGTGCTGTTTTGCTAACACTTAACACATATTTGCGGCGTT
TTTAACAAAA
Found at i:79358021 original size:22 final size:23
Alignment explanation
Indices: 79357996--79358081 Score: 63
Period size: 22 Copynumber: 3.8 Consensus size: 23
79357986 ATTACCAGGG
* * *
79357996 TTTAGAGTTTTAGGGTTT-ATGA
1 TTTAGAGTTTAAAGGTTTAAGGA
*
79358018 TTTAGGGTTTAAAGGTTTAAGGA
1 TTTAGAGTTTAAAGGTTTAAGGA
* *
79358041 TTTAG-TTTCTAAA-GTTTAAGGT
1 TTTAGAGTT-TAAAGGTTTAAGGA
*
79358063 TTTATG-GTTTAAGGGTTTA
1 TTTA-GAGTTTAAAGGTTTA
79358082 CAGTTCATAG
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
22 32 0.62
23 20 0.38
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.48
Consensus pattern (23 bp):
TTTAGAGTTTAAAGGTTTAAGGA
Found at i:79358109 original size:14 final size:14
Alignment explanation
Indices: 79358090--79358172 Score: 53
Period size: 14 Copynumber: 5.9 Consensus size: 14
79358080 TACAGTTCAT
79358090 AGGTTAGGATTTAG
1 AGGTTAGGATTTAG
*
79358104 AGGTTAGGCTTTAG
1 AGGTTAGGATTTAG
** *
79358118 ATTTTAGGGTTTAG
1 AGGTTAGGATTTAG
*
79358132 -GTGTTA-AAGTTTAG
1 AG-GTTAGGA-TTTAG
* *
79358146 GGGTTAGGCTTTAG
1 AGGTTAGGATTTAG
* *
79358160 AGTTTAGGGTTTA
1 AGGTTAGGATTTA
79358173 AGGGCTGAAA
Statistics
Matches: 52, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
14 51 0.98
15 1 0.02
ACGTcount: A:0.23, C:0.02, G:0.34, T:0.41
Consensus pattern (14 bp):
AGGTTAGGATTTAG
Found at i:79358117 original size:21 final size:20
Alignment explanation
Indices: 79358099--79358170 Score: 83
Period size: 21 Copynumber: 3.5 Consensus size: 20
79358089 TAGGTTAGGA
*
79358099 TTTAGAGGTTAGGCTTTAGAT
1 TTTAG-GGTTAGGCTTTAGAG
*
79358120 TTTAGGGTTTAGG-TGTTAAAG
1 TTTAGGG-TTAGGCT-TTAGAG
79358141 TTTAGGGGTTAGGCTTTAGAG
1 TTTA-GGGTTAGGCTTTAGAG
79358162 TTTAGGGTT
1 TTTAGGGTT
79358171 TAAGGGCTGA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
20 8 0.18
21 32 0.73
22 4 0.09
ACGTcount: A:0.21, C:0.03, G:0.33, T:0.43
Consensus pattern (20 bp):
TTTAGGGTTAGGCTTTAGAG
Found at i:79361085 original size:41 final size:41
Alignment explanation
Indices: 79360877--79361087 Score: 178
Period size: 41 Copynumber: 5.2 Consensus size: 41
79360867 ACACATTCGC
** * * * * * *
79360877 GGCGTTTGGATAAAAAATGCCACTATAGCTGATCCTTTTAT
1 GGCGTTTGGACCAAAAACGCCACTATTGCTCAACTTTTTGT
* *
79360918 GGCGTTTGGA-CAAAAACGCCACAATTGCTC-AGTTTTTAGT
1 GGCGTTTGGACCAAAAACGCCACTATTGCTCAACTTTTT-GT
* * * * * *
79360958 AGTGTTTGAAACAAAAACACCACAATTGAC-CAACTTTTTGT
1 GGCGTTTGGACCAAAAACGCCACTATTG-CTCAACTTTTTGT
*
79360999 GGCGTTTGGACCAAAAACGCCACTATTGCTC-AGTTTTTAGT
1 GGCGTTTGGACCAAAAACGCCACTATTGCTCAACTTTTT-GT
* * * *
79361040 GGCGTTTGGTCTAAAAGCGCCACTATTGCTCAACTTTTTGC
1 GGCGTTTGGACCAAAAACGCCACTATTGCTCAACTTTTTGT
79361081 GGCGTTT
1 GGCGTTT
79361088 TCTTACAAAC
Statistics
Matches: 137, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
39 4 0.03
40 30 0.22
41 90 0.66
42 13 0.09
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (41 bp):
GGCGTTTGGACCAAAAACGCCACTATTGCTCAACTTTTTGT
Found at i:79361085 original size:82 final size:81
Alignment explanation
Indices: 79360918--79361087 Score: 218
Period size: 82 Copynumber: 2.1 Consensus size: 81
79360908 ATCCTTTTAT
*
79360918 GGCGTTTGGACAAAAACGCCACAATTGCTCAGTTTTTAGTAGTGTTTGAAACAAAAACACCACAA
1 GGCGTTTGGACAAAAACGCCACAATTGCTCAGTTTTTAGTAGCGTTTGAAACAAAAACACCACAA
*
79360983 TTGACCAACTTTTTGT
66 TTGACCAACTTTTTGC
* * ** * *
79360999 GGCGTTTGGACCAAAAACGCCACTATTGCTCAGTTTTTAGTGGCGTTTG-GTCTAAAAGCGCCAC
1 GGCGTTTGGA-CAAAAACGCCACAATTGCTCAGTTTTTAGTAGCGTTTGAAAC-AAAAACACCAC
*
79361063 TATTG-CTCAACTTTTTGC
64 AATTGAC-CAACTTTTTGC
79361081 GGCGTTT
1 GGCGTTT
79361088 TCTTACAAAC
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
81 12 0.16
82 65 0.84
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (81 bp):
GGCGTTTGGACAAAAACGCCACAATTGCTCAGTTTTTAGTAGCGTTTGAAACAAAAACACCACAA
TTGACCAACTTTTTGC
Found at i:79363001 original size:16 final size:18
Alignment explanation
Indices: 79362980--79363012 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
79362970 ACATCAAATT
79362980 CCAATT-CAAA-TCACAA
1 CCAATTACAAAGTCACAA
79362996 CCAATTACAAAGTCACA
1 CCAATTACAAAGTCACA
79363013 CATATTTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.48, C:0.30, G:0.03, T:0.18
Consensus pattern (18 bp):
CCAATTACAAAGTCACAA
Found at i:79363271 original size:20 final size:21
Alignment explanation
Indices: 79363235--79363273 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
79363225 AACTAATCTT
79363235 AATTTCTATCAAATTCTCACA
1 AATTTCTATCAAATTCTCACA
*
79363256 AATTTC-ATCAATTTCTCA
1 AATTTCTATCAAATTCTCA
79363274 ACTATGGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTTCTATCAAATTCTCACA
Found at i:79376631 original size:11 final size:11
Alignment explanation
Indices: 79376615--79376660 Score: 65
Period size: 11 Copynumber: 4.1 Consensus size: 11
79376605 TATTGTAATC
79376615 AACATTAATAT
1 AACATTAATAT
79376626 AACATTAATAT
1 AACATTAATAT
79376637 AACATTAAATAT
1 AACATT-AATAT
* *
79376649 AATATTGATAT
1 AACATTAATAT
79376660 A
1 A
79376661 TTTCTAACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
11 22 0.69
12 10 0.31
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (11 bp):
AACATTAATAT
Found at i:79376647 original size:23 final size:22
Alignment explanation
Indices: 79376615--79376660 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
79376605 TATTGTAATC
79376615 AACATTAATATAACATTAATAT
1 AACATTAATATAACATTAATAT
* *
79376637 AACATTAAATATAATATTGATAT
1 AACATT-AATATAACATTAATAT
79376660 A
1 A
79376661 TTTCTAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (22 bp):
AACATTAATATAACATTAATAT
Found at i:79376914 original size:20 final size:19
Alignment explanation
Indices: 79376891--79376979 Score: 69
Period size: 20 Copynumber: 4.7 Consensus size: 19
79376881 GTTCAGAGTG
79376891 TAATTTTATTTTATAGTAAT
1 TAATTTTATTTTATAGT-AT
* * *
79376911 TAATTTTGTTTTTATTGTGT
1 TAATTTT-ATTTTATAGTAT
** *
79376931 T--TTAAAGTTTATAGT-T
1 TAATTTTATTTTATAGTAT
79376947 TAATTTTATTTTATAGTTAT
1 TAATTTTATTTTATAG-TAT
79376967 TAATTTT-TTTTAT
1 TAATTTTATTTTAT
79376980 CTTTTAAGAT
Statistics
Matches: 53, Mismatches: 11, Indels: 11
0.71 0.15 0.15
Matches are distributed among these distances:
16 2 0.04
17 7 0.13
18 12 0.23
19 7 0.13
20 17 0.32
21 8 0.15
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (19 bp):
TAATTTTATTTTATAGTAT
Found at i:79376936 original size:56 final size:56
Alignment explanation
Indices: 79376860--79376977 Score: 193
Period size: 56 Copynumber: 2.1 Consensus size: 56
79376850 AATTTTACAA
79376860 TTGTTTTTATTGTGTTTTAAAGTTCAGAGTGTAATTTTATTTTATAGTAATTAATT
1 TTGTTTTTATTGTGTTTTAAAGTTCAGAGTGTAATTTTATTTTATAGTAATTAATT
* * * *
79376916 TTGTTTTTATTGTGTTTTAAAGTTTATAGTTTAATTTTATTTTATAGTTATTAATT
1 TTGTTTTTATTGTGTTTTAAAGTTCAGAGTGTAATTTTATTTTATAGTAATTAATT
79376972 TT-TTTT
1 TTGTTTT
79376978 ATCTTTTAAG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
55 4 0.07
56 54 0.93
ACGTcount: A:0.25, C:0.01, G:0.12, T:0.63
Consensus pattern (56 bp):
TTGTTTTTATTGTGTTTTAAAGTTCAGAGTGTAATTTTATTTTATAGTAATTAATT
Found at i:79379943 original size:23 final size:22
Alignment explanation
Indices: 79379899--79379949 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
79379889 GAACAAATAT
79379899 AAATATAAATAATTATATAAAC
1 AAATATAAATAATTATATAAAC
79379921 AAATA-AAATAAATTAATATAAAC
1 AAATATAAAT-AATT-ATATAAAC
79379944 AAATAT
1 AAATAT
79379950 TTATATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.15
22 9 0.35
23 13 0.50
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (22 bp):
AAATATAAATAATTATATAAAC
Found at i:79395994 original size:81 final size:81
Alignment explanation
Indices: 79395691--79396123 Score: 521
Period size: 82 Copynumber: 5.3 Consensus size: 81
79395681 TTCTCAGGAT
* * * *
79395691 TAAATCCTGAAACAGGATTGTTTAATTAAATCTTGTTTGTAAACAAAATCAAAATCGAATAAAAT
1 TAAATCCCGAAACA-GATTATTCAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
79395756 CTGTTAAATGGCGGTAA
65 CTGTTAAATGGCGGTAA
* * *
79395773 TAAATTCCGAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
1 TAAATCCCGAAACAG-ATTATTCAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
** *
79395838 CTGTTAAACAGCGGGAA
65 CTGTTAAATGGCGGTAA
* * *
79395855 TAAATCCCGAAACAAAATTATTTAATTAAATCTTGTTTGGAAACAAAATCAGAATCGAATAAAAT
1 TAAATCCCGAAAC-AGATTATTCAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
* *
79395920 CTATTAAATGGTGGTAA
65 CTGTTAAATGGCGGTAA
* * * *
79395937 TAAATCCTGAAACAGATTATTCAATT-AATTTTCTTTTGGAAACAAAATCAAAATCGAATAAAAC
1 TAAATCCCGAAACAGATTATTCAATTAAATCTT-GTTTGGAAACAAAATCAAAATCGAATAAAAT
* *
79396001 CTATTAAATGGTGGTAA
65 CTGTTAAATGGCGGTAA
** * * * *
79396018 TAAATCCCGAAACAGATTATTCAATTATTTCTCGTTTTGAAACAAAATCAAAATTG-ATAAATTC
1 TAAATCCCGAAACAGATTATTCAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAATC
* *
79396082 TGTTAAATAGAGAG-AA
66 TGTTAAATGGCG-GTAA
* *
79396098 TATATCCCAAAACAGATTATTCAATT
1 TAAATCCCGAAACAGATTATTCAATT
79396124 TTAATTTTTA
Statistics
Matches: 307, Mismatches: 39, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
80 46 0.15
81 103 0.34
82 157 0.51
83 1 0.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (81 bp):
TAAATCCCGAAACAGATTATTCAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAATC
TGTTAAATGGCGGTAA
Found at i:79396855 original size:16 final size:17
Alignment explanation
Indices: 79396824--79396870 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
79396814 CAATTTGAAT
79396824 AAAATCAAATCAAATTG
1 AAAATCAAATCAAATTG
*
79396841 AAAATC-AATCTAATTG
1 AAAATCAAATCAAATTG
* *
79396857 -GAATAAAATCAAAT
1 AAAATCAAATCAAAT
79396871 CAAGATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
15 3 0.12
16 16 0.64
17 6 0.24
ACGTcount: A:0.57, C:0.11, G:0.06, T:0.26
Consensus pattern (17 bp):
AAAATCAAATCAAATTG
Found at i:79397875 original size:20 final size:20
Alignment explanation
Indices: 79397831--79397875 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
79397821 AGCAATAAAT
*
79397831 CTATTCACCAAGAGATACAA
1 CTATTCACCAAGAGACACAA
* * *
79397851 TTATTCATCAAGAGACAGAA
1 CTATTCACCAAGAGACACAA
79397871 CTATT
1 CTATT
79397876 GTTTAATTTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.20, G:0.11, T:0.27
Consensus pattern (20 bp):
CTATTCACCAAGAGACACAA
Found at i:79402305 original size:28 final size:26
Alignment explanation
Indices: 79402208--79402318 Score: 150
Period size: 27 Copynumber: 4.1 Consensus size: 26
79402198 AGCATGGCTG
* *
79402208 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
79402234 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
79402261 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
*
79402288 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
79402316 CCA
1 CCA
79402319 TAACGCTTCC
Statistics
Matches: 79, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
26 12 0.15
27 41 0.52
28 26 0.33
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:79410172 original size:27 final size:27
Alignment explanation
Indices: 79410132--79410245 Score: 126
Period size: 27 Copynumber: 4.2 Consensus size: 27
79410122 AGCATGGCTG
* *
79410132 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
79410158 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
* *
79410185 CCAGAATAGATATTTATGGC-GTAGCCA
1 CCAGAACAGATATTTGTGGCAG-AGCCA
* *
79410212 CCAGAAACAGATATTTGTGGCATAGTCA
1 CCAG-AACAGATATTTGTGGCAGAGCCA
79410240 CCAGAA
1 CCAGAA
79410246 TGATTCCTCC
Statistics
Matches: 75, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
26 12 0.16
27 41 0.55
28 22 0.29
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:79416934 original size:28 final size:27
Alignment explanation
Indices: 79416871--79417022 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
79416861 ATATTAAGTC
* *
79416871 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
79416898 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
79416926 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
79416953 CGCACACTTGGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
79416981 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
79417008 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79417023 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 65 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:79416955 original size:55 final size:55
Alignment explanation
Indices: 79416871--79417047 Score: 255
Period size: 55 Copynumber: 3.2 Consensus size: 55
79416861 ATATTAAGTC
* * *
79416871 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
79416926 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTGGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
79416981 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
79417037 CGCACACTTAG
1 CGCACACTTAG
79417048 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:79420266 original size:15 final size:16
Alignment explanation
Indices: 79420248--79420277 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79420238 AAAATACAAA
79420248 AGTC-TCAAATATTTT
1 AGTCATCAAATATTTT
79420263 AGTCATCAAATATTT
1 AGTCATCAAATATTT
79420278 GAGACTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (16 bp):
AGTCATCAAATATTTT
Found at i:79431239 original size:17 final size:17
Alignment explanation
Indices: 79431217--79431281 Score: 62
Period size: 19 Copynumber: 3.8 Consensus size: 17
79431207 TTTTTATGCT
*
79431217 TTATATATATTATTTTA
1 TTATATATATTATTATA
79431234 TTATATATTATATATTATA
1 TTATATA-TAT-TATTATA
*
79431253 TTATAT-TA-TATTGTA
1 TTATATATATTATTATA
*
79431268 TTGTATTATATTAT
1 TTATA-TATATTAT
79431282 ATAAGTAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
15 10 0.25
16 1 0.03
17 11 0.28
18 6 0.15
19 12 0.30
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTATATATATTATTATA
Found at i:79431244 original size:24 final size:24
Alignment explanation
Indices: 79431220--79431283 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 24
79431210 TTATGCTTTA
79431220 TATATATTAT-TT-TATTATATAT
1 TATATATTATATTATATTATATAT
79431242 TATATATTATATTATATTATAT-T
1 TATATATTATATTATATTATATAT
*
79431265 GTATTGTATTATATTATAT
1 -TA-TATATTATATTATAT
79431284 AAGTAAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
22 10 0.27
23 3 0.08
24 10 0.27
25 14 0.38
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (24 bp):
TATATATTATATTATATTATATAT
Found at i:79431245 original size:5 final size:5
Alignment explanation
Indices: 79431217--79431283 Score: 72
Period size: 5 Copynumber: 14.2 Consensus size: 5
79431207 TTTTTATGCT
79431217 TTATA -TATA TTAT- TT-TA TTATA -TAT- TATATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA T-TATA TTATA TTATA TTATA
* *
79431263 TTGTA TTGTA TTATA TTATA T
1 TTATA TTATA TTATA TTATA T
79431284 AAGTAAAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
3 1 0.02
4 11 0.20
5 41 0.76
6 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:79431507 original size:61 final size:61
Alignment explanation
Indices: 79431438--79431561 Score: 221
Period size: 61 Copynumber: 2.0 Consensus size: 61
79431428 AAAAGATATA
79431438 AAGTAAAAGAAAGAAAGAAACAAAGAAGAAAAGAAACAGAATACCTAGAAAAGAAGCAGGG
1 AAGTAAAAGAAAGAAAGAAACAAAGAAGAAAAGAAACAGAATACCTAGAAAAGAAGCAGGG
* * *
79431499 AAGTAAAAGAAAGAAAGAAACAAAGAAGAAAAGAAACAGAATAGCTATAAAAGAAGTAGGG
1 AAGTAAAAGAAAGAAAGAAACAAAGAAGAAAAGAAACAGAATACCTAGAAAAGAAGCAGGG
79431560 AA
1 AA
79431562 AGAGACGAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.65, C:0.06, G:0.23, T:0.06
Consensus pattern (61 bp):
AAGTAAAAGAAAGAAAGAAACAAAGAAGAAAAGAAACAGAATACCTAGAAAAGAAGCAGGG
Found at i:79437820 original size:40 final size:40
Alignment explanation
Indices: 79437677--79437840 Score: 222
Period size: 40 Copynumber: 4.1 Consensus size: 40
79437667 TGGATGATAA
* * * *
79437677 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
79437717 CCGGGCTAAGTCCTGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
79437757 CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
79437797 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
79437837 CCGG
1 CCGG
79437841 TTAAATCCAG
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:79449747 original size:87 final size:88
Alignment explanation
Indices: 79449583--79449747 Score: 278
Period size: 87 Copynumber: 1.9 Consensus size: 88
79449573 TTTTTAGAGT
*
79449583 ATATTAGGAAAAATAATTACTCATAAAGAAATAACCGAAATTGATAATTAAAAATAAAATTCTAA
1 ATATTAGGAAAAATAATTACTCATAAAGAAATAACCGAAATTAATAATTAAAAATAAAATTCTAA
* *
79449648 AATTTAATAAAAATAAAAATTAA
66 AATCTAACAAAAATAAAAATTAA
* *
79449671 ATATT-GGAAGAATAATTACTCATAAAGAAATAACTGAAATTAATAATTAAAAATAAAATTCTAA
1 ATATTAGGAAAAATAATTACTCATAAAGAAATAACCGAAATTAATAATTAAAAATAAAATTCTAA
79449735 AATCTAACAAAAA
66 AATCTAACAAAAA
79449748 AAAGTAGTTT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
87 67 0.93
88 5 0.07
ACGTcount: A:0.59, C:0.07, G:0.06, T:0.28
Consensus pattern (88 bp):
ATATTAGGAAAAATAATTACTCATAAAGAAATAACCGAAATTAATAATTAAAAATAAAATTCTAA
AATCTAACAAAAATAAAAATTAA
Found at i:79451389 original size:38 final size:39
Alignment explanation
Indices: 79451338--79451420 Score: 152
Period size: 38 Copynumber: 2.2 Consensus size: 39
79451328 ATTAAAAGTA
79451338 AGTAGAATAGAGGTGAAAAGAGTAAA-AAATGCTAAGGG
1 AGTAGAATAGAGGTGAAAAGAGTAAACAAATGCTAAGGG
79451376 AGTAGAATAGAGGTGAAAAGAGTAAACAAATGCTAAGGG
1 AGTAGAATAGAGGTGAAAAGAGTAAACAAATGCTAAGGG
79451415 AG-AGAA
1 AGTAGAA
79451421 ATCAAGCGTC
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
38 30 0.68
39 14 0.32
ACGTcount: A:0.51, C:0.04, G:0.31, T:0.14
Consensus pattern (39 bp):
AGTAGAATAGAGGTGAAAAGAGTAAACAAATGCTAAGGG
Found at i:79452166 original size:41 final size:41
Alignment explanation
Indices: 79452109--79452191 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
79452099 CTCTGTCGAA
* *
79452109 TGATCATGGTGGTTTGAGGATTTTATACTCCTCATTCCTGC
1 TGATCATGGTAGTTTGAGGAGTTTATACTCCTCATTCCTGC
*
79452150 TGATCATGGTAGTTTGAGGAGTTTATACTCCTCATTCTTGC
1 TGATCATGGTAGTTTGAGGAGTTTATACTCCTCATTCCTGC
79452191 T
1 T
79452192 ATTAATCTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (41 bp):
TGATCATGGTAGTTTGAGGAGTTTATACTCCTCATTCCTGC
Found at i:79454874 original size:5 final size:5
Alignment explanation
Indices: 79454864--79454894 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
79454854 ATAATAATAA
79454864 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT T
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT T
79454895 GCAAGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAAAT
Found at i:79470060 original size:34 final size:33
Alignment explanation
Indices: 79470017--79470083 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
79470007 CATATCACTA
*
79470017 ACAGTTCAGTTTCAGT-TAAGGCCTTAGCCCATT
1 ACAGTTCAGTATCAGTGT-AGGCCTTAGCCCATT
79470050 ACAGTATCAGTATCAGTGTAGGCCTTAGCCCATT
1 ACAGT-TCAGTATCAGTGTAGGCCTTAGCCCATT
79470084 TTGGTAACAG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
33 5 0.16
34 25 0.81
35 1 0.03
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.31
Consensus pattern (33 bp):
ACAGTTCAGTATCAGTGTAGGCCTTAGCCCATT
Found at i:79470095 original size:34 final size:34
Alignment explanation
Indices: 79470035--79470100 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
79470025 GTTTCAGTTA
* *
79470035 AGGCCTTAGCCCATTACAGTATCAGTATCAGTGT
1 AGGCCTTAGCCCATTACAGTAACAGTAACAGTGT
***
79470069 AGGCCTTAGCCCATTTTGGTAACAGTAACAGT
1 AGGCCTTAGCCCATTACAGTAACAGTAACAGT
79470101 ACAGATATGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (34 bp):
AGGCCTTAGCCCATTACAGTAACAGTAACAGTGT
Found at i:79486398 original size:49 final size:49
Alignment explanation
Indices: 79486227--79486464 Score: 287
Period size: 49 Copynumber: 4.8 Consensus size: 49
79486217 TGAGGTTGCA
* * * * *
79486227 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* * ** *
79486278 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
*
79486328 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * * *
79486377 TATGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
79486426 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
79486465 GCTTTGGCTA
Statistics
Matches: 160, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 85 0.53
50 43 0.27
51 32 0.20
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:79486400 original size:99 final size:100
Alignment explanation
Indices: 79486225--79486464 Score: 313
Period size: 99 Copynumber: 2.4 Consensus size: 100
79486215 TGTGAGGTTG
* * *
79486225 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTATGTAGTACTA
* **
79486290 AGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCA
66 AGTGCAAGCTACTACGTGTACCAGATAATT-GGTCA
** * * * *
79486326 TGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAA-T-TGGTCACGTATGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTATGTAGTACTA
* * *
79486389 AGTGCAGGCTACTACGTGTACCGGATAATTGGTCG
66 AGTGCAAGCTACTACGTGTACCAGATAATTGGTCA
*
79486424 CATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
79486465 GCTTTGGCTA
Statistics
Matches: 118, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
98 39 0.33
99 43 0.36
100 1 0.01
101 35 0.30
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (100 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTATGTAGTACTA
AGTGCAAGCTACTACGTGTACCAGATAATTGGTCA
Found at i:79488094 original size:15 final size:14
Alignment explanation
Indices: 79488074--79488107 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
79488064 ATATAGAATG
79488074 ATATCAATCCAAATC
1 ATATCAAT-CAAATC
*
79488089 ATATCAATCAAATG
1 ATATCAATCAAATC
79488103 ATATC
1 ATATC
79488108 CCAAAAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.47, C:0.21, G:0.03, T:0.29
Consensus pattern (14 bp):
ATATCAATCAAATC
Found at i:79488106 original size:14 final size:15
Alignment explanation
Indices: 79488070--79488107 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
79488060 ACCCATATAG
79488070 AATGATATCAATCCA
1 AATGATATCAATCCA
*
79488085 AATCATATCAAT-CA
1 AATGATATCAATCCA
79488099 AATGATATC
1 AATGATATC
79488108 CCAAAAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.29
Consensus pattern (15 bp):
AATGATATCAATCCA
Found at i:79491782 original size:44 final size:44
Alignment explanation
Indices: 79491693--79491784 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 44
79491683 TCCCAGATAG
* * * *
79491693 GGTCTTACTCGTACACATATATCGAAGTCACATATCGATGCCAT
1 GGTCTTACTCGCACACACATATCGAAATCACATATCGATGACAT
*
79491737 GGTCTTACTCGCACATCACATATCGAAATC-CTATGTC-ATGACAT
1 GGTCTTACTCGCACA-CACATATCGAAATCAC-ATATCGATGACAT
79491781 GGTC
1 GGTC
79491785 ATTCATTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
44 25 0.61
45 16 0.39
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (44 bp):
GGTCTTACTCGCACACACATATCGAAATCACATATCGATGACAT
Found at i:79494271 original size:29 final size:30
Alignment explanation
Indices: 79494220--79494332 Score: 112
Period size: 29 Copynumber: 4.0 Consensus size: 30
79494210 CATGCATAGA
* * *
79494220 GCCCA-CTAGGTCCAA-TCTTATTCAAATG
1 GCCCATCTAGGCCCAATTCATATTCATATG
* *
79494248 GCCCATCT-GGCCCAGTTCATATTCTTATG
1 GCCCATCTAGGCCCAATTCATATTCATATG
* *
79494277 GCCCA-CTACGCCCAATTCATCTTCATATG
1 GCCCATCTAGGCCCAATTCATATTCATATG
*
79494306 GCCCAT-TAGGCCCAAATCATATT-ATAT
1 GCCCATCTAGGCCCAATTCATATTCATAT
79494333 TCATGCTCAC
Statistics
Matches: 69, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 16 0.23
29 53 0.77
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (30 bp):
GCCCATCTAGGCCCAATTCATATTCATATG
Found at i:79496709 original size:12 final size:12
Alignment explanation
Indices: 79496692--79496716 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79496682 CATTCAAAAT
79496692 CATCTGAATCAA
1 CATCTGAATCAA
79496704 CATCTGAATCAA
1 CATCTGAATCAA
79496716 C
1 C
79496717 TTTTGCAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.28, G:0.08, T:0.24
Consensus pattern (12 bp):
CATCTGAATCAA
Found at i:79498040 original size:41 final size:42
Alignment explanation
Indices: 79497975--79498058 Score: 127
Period size: 41 Copynumber: 2.0 Consensus size: 42
79497965 GGCCCAAAAC
79497975 AGCCATCGGAAGAGATTCGAGACTAAATCAAGAAC-TTTAGA
1 AGCCATCGGAAGAGATTCGAGACTAAATCAAGAACTTTTAGA
* *
79498016 AGCCATCGGAAGAGGATT-GGGACTAAATCGAGAACTTTTAGA
1 AGCCATCGGAAGA-GATTCGAGACTAAATCAAGAACTTTTAGA
79498058 A
1 A
79498059 AAGTTTAGGA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
41 28 0.72
42 11 0.28
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.20
Consensus pattern (42 bp):
AGCCATCGGAAGAGATTCGAGACTAAATCAAGAACTTTTAGA
Found at i:79504821 original size:30 final size:30
Alignment explanation
Indices: 79504776--79504835 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
79504766 ATTTAATACG
*
79504776 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
79504806 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
79504836 GGCTCGGGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:79512259 original size:30 final size:30
Alignment explanation
Indices: 79512225--79512284 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
79512215 ATTTAATATG
*
79512225 AACTTTGGAAAAATTACATTTTTACCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
* * * *
79512255 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
79512285 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTACCCCTA
Found at i:79517464 original size:26 final size:26
Alignment explanation
Indices: 79517431--79517484 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
79517421 TGCTATTCTC
79517431 CAAGCCAATTGTCACCCACAATCATT
1 CAAGCCAATTGTCACCCACAATCATT
79517457 CAAGCCAATTGTCACCCACAATCATT
1 CAAGCCAATTGTCACCCACAATCATT
79517483 CA
1 CA
79517485 TACATTCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.35, G:0.07, T:0.22
Consensus pattern (26 bp):
CAAGCCAATTGTCACCCACAATCATT
Found at i:79528119 original size:29 final size:28
Alignment explanation
Indices: 79528083--79528160 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
79528073 TCATGAGATT
79528083 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
79528113 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
79528140 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
79528161 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:79528586 original size:213 final size:213
Alignment explanation
Indices: 79528219--79528643 Score: 841
Period size: 213 Copynumber: 2.0 Consensus size: 213
79528209 TATTTACATT
*
79528219 AAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTACCTTGAGTTCATGGCT
1 AAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTACCTTGAGTTCATGGCT
79528284 AATAGGCGCTATGTTTATATTTGGAGTTGAGCTTGGTAAGTTTTGAACCTATGTGACGATTATAG
66 AATAGGCGCTATGTTTATATTTGGAGTTGAGCTTGGTAAGTTTTGAACCTATGTGACGATTATAG
79528349 TTGAAGTCACGTACATAAGGTTCATTGTGGAATAGGTGAAAGTTCGTTTAATTGTATGATTATAA
131 TTGAAGTCACGTACATAAGGTTCATTGTGGAATAGGTGAAAGTTCGTTTAATTGTATGATTATAA
79528414 CGAAAATAAAATGATGTG
196 CGAAAATAAAATGATGTG
79528432 AAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTACCTTGAGTTCATGGCT
1 AAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTACCTTGAGTTCATGGCT
79528497 AATAGGCGCTATGTTTATATTTGGAGTTGAGCTTGGTAAGTTTTGAACCTATGTGACGATTATAG
66 AATAGGCGCTATGTTTATATTTGGAGTTGAGCTTGGTAAGTTTTGAACCTATGTGACGATTATAG
79528562 TTGAAGTCACGTACATAAGGTTCATTGTGGAATAGGTGAAAGTTCGTTTAATTGTATGATTATAA
131 TTGAAGTCACGTACATAAGGTTCATTGTGGAATAGGTGAAAGTTCGTTTAATTGTATGATTATAA
79528627 CGAAAATAAAATGATGT
196 CGAAAATAAAATGATGT
79528644 ATGAAAGGCC
Statistics
Matches: 211, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
213 211 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (213 bp):
AAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTACCTTGAGTTCATGGCT
AATAGGCGCTATGTTTATATTTGGAGTTGAGCTTGGTAAGTTTTGAACCTATGTGACGATTATAG
TTGAAGTCACGTACATAAGGTTCATTGTGGAATAGGTGAAAGTTCGTTTAATTGTATGATTATAA
CGAAAATAAAATGATGTG
Found at i:79531502 original size:3 final size:3
Alignment explanation
Indices: 79531494--79531525 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
79531484 ATGATGTTTT
79531494 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CT
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CT
79531526 AGCTTAGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (3 bp):
CTC
Found at i:79535736 original size:35 final size:35
Alignment explanation
Indices: 79535690--79535756 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
79535680 AACGCCTTCG
* * *
79535690 GGCTTAGCACTTAGGTGCTCTTTGGTGTGTTTGGC
1 GGCTTAGCACTTAGGTCCCCATTGGTGTGTTTGGC
* *
79535725 GGCTTGGCACTTTGGTCCCCATTGGTGTGTTT
1 GGCTTAGCACTTAGGTCCCCATTGGTGTGTTT
79535757 TGAAGGGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.07, C:0.19, G:0.33, T:0.40
Consensus pattern (35 bp):
GGCTTAGCACTTAGGTCCCCATTGGTGTGTTTGGC
Found at i:79536659 original size:22 final size:23
Alignment explanation
Indices: 79536624--79536668 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
79536614 TTAAGTTTAA
*
79536624 ATGAAGTTTGAAATTAATTTATG
1 ATGAAGTTTGAAATGAATTTATG
* *
79536647 ATGAGGTTT-AAATGCATTTATG
1 ATGAAGTTTGAAATGAATTTATG
79536669 TTTTTTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.02, G:0.20, T:0.42
Consensus pattern (23 bp):
ATGAAGTTTGAAATGAATTTATG
Found at i:79540455 original size:53 final size:52
Alignment explanation
Indices: 79540396--79540495 Score: 130
Period size: 53 Copynumber: 1.9 Consensus size: 52
79540386 AAAGATAAAA
* * * *
79540396 TTAAATTTTTATTATTTTTAGAGAGA-TTAAAATATAATTTTATTTTTATTAAT
1 TTAAATTTTTATAAGTTTTAAAGAGAGTTAAAA-A-AATTTTAATTTTATTAAT
*
79540449 TTAAATTTTTATAAGTTTTAAAGGGAGTTAAAAAAATTTTAATTTTA
1 TTAAATTTTTATAAGTTTTAAAGAGAGTTAAAAAAATTTTAATTTTA
79540496 GAGATGGCCG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
52 12 0.29
53 23 0.56
54 6 0.15
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (52 bp):
TTAAATTTTTATAAGTTTTAAAGAGAGTTAAAAAAATTTTAATTTTATTAAT
Found at i:79540879 original size:21 final size:22
Alignment explanation
Indices: 79540845--79540885 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
79540835 TTTAACAGGT
79540845 AATTGAATTGAAATAAAATTTG
1 AATTGAATTGAAATAAAATTTG
*
79540867 AATT-AATTTAAATAAAATT
1 AATTGAATTGAAATAAAATT
79540886 ATTTGAGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (22 bp):
AATTGAATTGAAATAAAATTTG
Found at i:79540978 original size:16 final size:16
Alignment explanation
Indices: 79540953--79540986 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
79540943 TTTATGGAGA
79540953 ATATAAATTTAAAATT
1 ATATAAATTTAAAATT
* *
79540969 ATATATATTTGAAATT
1 ATATAAATTTAAAATT
79540985 AT
1 AT
79540987 TTTCAAAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATATAAATTTAAAATT
Found at i:79543107 original size:17 final size:17
Alignment explanation
Indices: 79543085--79543143 Score: 73
Period size: 17 Copynumber: 3.4 Consensus size: 17
79543075 AATTTTTTTT
*
79543085 AAAAAATTGATGAGTTA
1 AAAAAATTGATGAGTAA
*
79543102 AAAAAATTGGTGAGTAA
1 AAAAAATTGATGAGTAA
* *
79543119 AAATAAATTTATGTGTAA
1 AAA-AAATTGATGAGTAA
79543137 AAAAAAT
1 AAAAAAT
79543144 AGGAAAGGCG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
17 22 0.61
18 14 0.39
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.29
Consensus pattern (17 bp):
AAAAAATTGATGAGTAA
Found at i:79545158 original size:13 final size:13
Alignment explanation
Indices: 79545140--79545188 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
79545130 TAAATTATTG
79545140 TTAATATTTAAAT
1 TTAATATTTAAAT
79545153 TTAATATTTAAGAT
1 TTAATATTTAA-AT
* *
79545167 GTAATGTTTAAAT
1 TTAATATTTAAAT
79545180 ATT-ATATTT
1 -TTAATATTT
79545189 TTATTTGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 18 0.60
14 12 0.40
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (13 bp):
TTAATATTTAAAT
Found at i:79545928 original size:21 final size:20
Alignment explanation
Indices: 79545898--79545948 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
79545888 AAATTAAAAA
* *
79545898 TAAAAAATATTAGCTTCTAT
1 TAAAAAATATTAACTCCTAT
79545918 TAAAACAATATTAACTCCTAT
1 TAAAA-AATATTAACTCCTAT
79545939 TAAAAAATAT
1 TAAAAAATAT
79545949 ATATCAACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 10 0.36
21 18 0.64
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (20 bp):
TAAAAAATATTAACTCCTAT
Found at i:79546026 original size:5 final size:5
Alignment explanation
Indices: 79546016--79546041 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
79546006 CAATATAAAC
79546016 TATAA TATAA TATAA TATAA TATAA T
1 TATAA TATAA TATAA TATAA TATAA T
79546042 TACATACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:79546878 original size:17 final size:18
Alignment explanation
Indices: 79546856--79546892 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
79546846 AATTTGATTT
79546856 TTATAAAA-TAAAATTAA
1 TTATAAAATTAAAATTAA
79546873 TTATAAAATTTAAAATTAA
1 TTATAAAA-TTAAAATTAA
79546892 T
1 T
79546893 ATTATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
19 10 0.56
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TTATAAAATTAAAATTAA
Found at i:79546886 original size:24 final size:24
Alignment explanation
Indices: 79546859--79546905 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
79546849 TTGATTTTTA
*
79546859 TAAAA-TAAAATTAATTATAAAATT
1 TAAAATTAAAATT-ATTAAAAAATT
*
79546883 TAAAATTAATATTATTAAAAAAT
1 TAAAATTAAAATTATTAAAAAAT
79546906 AATTATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
TAAAATTAAAATTATTAAAAAATT
Found at i:79547324 original size:21 final size:21
Alignment explanation
Indices: 79547306--79547345 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
79547296 GAAATTTAGG
79547306 ATTTAAT-T-ATTGTATTTTA
1 ATTTAATATAATTGTATTTTA
*
79547325 ATTTAATATAATTTTATTTTA
1 ATTTAATATAATTGTATTTTA
79547346 TTTTTATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 1 0.06
21 10 0.56
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
ATTTAATATAATTGTATTTTA
Found at i:79547540 original size:12 final size:12
Alignment explanation
Indices: 79547525--79547560 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
79547515 TTTAGACAAG
79547525 TGTTTGAACAGA
1 TGTTTGAACAGA
*
79547537 TGTTTGAACACA
1 TGTTTGAACAGA
*
79547549 TGTTCGAACAGA
1 TGTTTGAACAGA
79547561 ACACAAGCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (12 bp):
TGTTTGAACAGA
Found at i:79549193 original size:18 final size:18
Alignment explanation
Indices: 79549170--79549219 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
79549160 GGATGTGTCG
79549170 TTCATTTTCAAAACGTAA
1 TTCATTTTCAAAACGTAA
* * *
79549188 TTCATTATCAAAAAGTTA
1 TTCATTTTCAAAACGTAA
79549206 TTC-TCTTTCAAAAC
1 TTCAT-TTTCAAAAC
79549220 ATTATTAACT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (18 bp):
TTCATTTTCAAAACGTAA
Found at i:79552811 original size:14 final size:14
Alignment explanation
Indices: 79552792--79552821 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
79552782 AAAGTTAGAT
79552792 CGAGTAAAGGAGAA
1 CGAGTAAAGGAGAA
79552806 CGAGTAAAGGAGAA
1 CGAGTAAAGGAGAA
79552820 CG
1 CG
79552822 TTTCAGATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.10, G:0.37, T:0.07
Consensus pattern (14 bp):
CGAGTAAAGGAGAA
Found at i:79557079 original size:48 final size:48
Alignment explanation
Indices: 79557006--79557226 Score: 291
Period size: 48 Copynumber: 4.6 Consensus size: 48
79556996 ATGTGTAACC
* * * * *
79557006 GTGTAAGACCCTATCTGGGATATGGCATCAACATTGTTATCTGATCCC
1 GTGTAAGACCATGTCTGGGACATGGCATCAACATTGTTATCTGAGCCA
* * * * *
79557054 GTGTAAGACCATGTCTGGGACATGGCTTCGACATTGTTATGTCAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAACATTGTTATCTGAGCCA
*
79557102 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGTTA-CGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAACATTGTTATC-TGAGCCA
* * * *
79557150 GTGTAAGACCATGTCTAGGACATGGCAACAACATTGTTATATGAACCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAACATTGTTATCTGAGCCA
79557198 GTGTAAGACCATGTCTGGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
79557227 GGTATTAGGC
Statistics
Matches: 150, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
48 150 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAACATTGTTATCTGAGCCA
Found at i:79563275 original size:49 final size:47
Alignment explanation
Indices: 79563153--79563470 Score: 226
Period size: 48 Copynumber: 6.7 Consensus size: 47
79563143 GGTATGATGC
* * *
79563153 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAAG
* *
79563200 CGATGCCATGTCCCAGACATGGTCTTACATTGACT-ATCAAAATCAAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATCAAAG
* * ***
79563248 CTGATGTCTTGTCCCAGACATGGTCTTACACT-ATCTC-TCACATATCCGTG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCAT--CA-ATCAAAG
** * * * * **
79563298 CTGACACCATGTCCCAGACATGGTCTTACATTGACACCTCTAT-ATGTG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCA-AAG
* *
79563346 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC-A-CATAG
1 -CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAAG
* *
79563392 CTGATG-CATGTCCCAGACAT-GTCTTACACT-AGCTCTAGTC--TTAATG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGA-CTC-A-TCAATCAAAG
79563438 TCGATGCCATGTCCCAGACATGGTCTTACACTG
1 -CGATGCCATGTCCCAGACATGGTCTTACACTG
79563471 GCTCTCATAA
Statistics
Matches: 220, Mismatches: 29, Indels: 42
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.00
44 12 0.05
45 16 0.07
46 16 0.07
47 50 0.23
48 56 0.25
49 33 0.15
50 33 0.15
51 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAAG
Found at i:79563496 original size:47 final size:47
Alignment explanation
Indices: 79563150--79563513 Score: 272
Period size: 47 Copynumber: 7.7 Consensus size: 47
79563140 TGGGGTATGA
* *
79563150 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA-A
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTC-T-CAT-AATG
* * *
79563199 T--CGATGCCATGTCCCAGACATGGTCTTACATTGACTATCAAAATCAAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAAT---G
* * * *
79563247 -GCTGATGTCTTGTCCCAGACATGGTCTTACACT-ATCTCTCACATATCCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATA-AT--G
* ** * *
79563296 TGCTGACACCATGTCCCAGACATGGTCTTACATTGACACCTC-TATATG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TCTCATA-ATG
* *
79563344 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCA-CAT-
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCATAATG
* * *
79563390 AGCTGATG-CATGTCCCAGACAT-GTCTTACACT-AGCTCTAGTCTTAATG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTC---TCATAATG
*
79563438 T--CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATG
*
79563483 TGGCCGATG-CATGTCCCAAACAT-GTCTTACA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACA
79563514 TTAGCACACA
Statistics
Matches: 254, Mismatches: 37, Indels: 51
0.74 0.11 0.15
Matches are distributed among these distances:
43 1 0.00
44 14 0.06
45 24 0.09
46 21 0.08
47 65 0.26
48 55 0.22
49 35 0.14
50 35 0.14
51 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATG
Done.