Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 238 of 284
Found at i:79568901 original size:45 final size:45
Alignment explanation
Indices: 79568800--79568926 Score: 129
Period size: 45 Copynumber: 2.9 Consensus size: 45
79568790 TTTTCTCAAA
* *
79568800 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
* *
79568842 TCACCGGTATTATAGCCTGCTAGGCTCGAAGGCTCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
** * *
79568886 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
79568927 ATCAAGTCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
42 10 0.14
43 14 0.20
44 7 0.10
45 38 0.54
46 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:79569317 original size:43 final size:43
Alignment explanation
Indices: 79569247--79569453 Score: 315
Period size: 43 Copynumber: 4.8 Consensus size: 43
79569237 ATCATTTCAG
* *
79569247 CGGCATTATGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
1 CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
* *
79569290 CGGTACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
1 CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
* * * * *
79569333 TGGCACAAAGCTTGCTAGGCACGAAGGCCCGAATACGCATCAT
1 CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
* *
79569376 CGACACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAT
1 CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
79569419 CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
1 CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
79569454 TAATACCAGT
Statistics
Matches: 148, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 148 1.00
ACGTcount: A:0.30, C:0.31, G:0.25, T:0.14
Consensus pattern (43 bp):
CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
Found at i:79577240 original size:46 final size:46
Alignment explanation
Indices: 79577173--79577350 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
79577163 TGTAACCCGC
* *
79577173 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
* *
79577219 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTAGCAT
* *** * * ** *
79577265 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
* *
79577312 CCATAAGTGAACTGGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
79577351 CCCAAACATC
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
46 72 0.68
47 34 0.32
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
Found at i:79577293 original size:93 final size:93
Alignment explanation
Indices: 79577181--79577352 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
79577171 GCCCATAAGT
****
79577181 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79577246 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
79577274 GAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTGGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
79577339 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
79577353 CAAACATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:79580552 original size:37 final size:37
Alignment explanation
Indices: 79580510--79580583 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
79580500 AAAATTTTAG
79580510 AAAACAACATGAACACACTCATGGTAAAACCCTAGAC
1 AAAACAACATGAACACACTCATGGTAAAACCCTAGAC
79580547 AAAACAACATGAACACACTCATGGTAAAACCCTAGAC
1 AAAACAACATGAACACACTCATGGTAAAACCCTAGAC
79580584 TTTCAACCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.49, C:0.27, G:0.11, T:0.14
Consensus pattern (37 bp):
AAAACAACATGAACACACTCATGGTAAAACCCTAGAC
Found at i:79591323 original size:27 final size:27
Alignment explanation
Indices: 79591293--79591395 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
79591283 TTCACTATAG
*
79591293 AGGCTTTTCTTTCATGATTCATCACAA
1 AGGCTTTTCTTTCATGATTCACCACAA
*
79591320 AGGCTTTTATTTCATGATTCACCAC-A
1 AGGCTTTTCTTTCATGATTCACCACAA
* *
79591346 AGGATTTTTCTTTCATGATTCGCCACAA
1 AGG-CTTTTCTTTCATGATTCACCACAA
** *
79591374 AGATTTTTCTTTCATGGTTCAC
1 AGGCTTTTCTTTCATGATTCAC
79591396 TATAAAGACT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 4 0.06
27 59 0.89
28 3 0.05
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (27 bp):
AGGCTTTTCTTTCATGATTCACCACAA
Found at i:79593937 original size:17 final size:17
Alignment explanation
Indices: 79593915--79593949 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
79593905 GAGTTCATCT
79593915 AGGCTTAAGATGCAAAG
1 AGGCTTAAGATGCAAAG
79593932 AGGCTTAAGATGCAAAG
1 AGGCTTAAGATGCAAAG
79593949 A
1 A
79593950 AATTCGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.29, T:0.17
Consensus pattern (17 bp):
AGGCTTAAGATGCAAAG
Found at i:79594445 original size:47 final size:46
Alignment explanation
Indices: 79594377--79594595 Score: 167
Period size: 46 Copynumber: 4.7 Consensus size: 46
79594367 TTTGTGGGCT
** *
79594377 AGTGTAAGA-ATGTCTAGGACATGCATCGGCCA-CATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGG-CATCAAGACGAGAGCC
* * *
79594422 AGTGTAAGACCATGCCTAGGACATGGCATCGGCATTAAGACGAGAGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCATCAAGACGAGAGCC
* * * **
79594470 AGTGTAAGACATGTCTGGGACATGCATCGTCCTTGAGACGTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCATCAAGACG-AGAGCC
* * * * * * *
79594516 AGTGTAAGACATGTTTGGGACATGCATAGGC-TACGAGATGATAGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCAT-CAAGACGAGAGCC
* *
79594562 AGTGTAAGAACATGTCTGGGACATGGCATTGGCA
1 AGTGTAAG-ACATGTCTAGGACAT-GCATCGGCA
79594596 CCTTACCCAC
Statistics
Matches: 144, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
45 11 0.08
46 61 0.42
47 41 0.28
48 31 0.22
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCATCAAGACGAGAGCC
Found at i:79598208 original size:26 final size:24
Alignment explanation
Indices: 79598177--79598225 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
79598167 AAAGTCTTTA
*
79598177 TTTTAAAGTTTTCTTTTATCATATTG
1 TTTTAAAATTTT-TTTTAT-ATATTG
79598203 TTTTAAAATTTTTTTTATATATT
1 TTTTAAAATTTTTTTTATATATT
79598226 ACTTAGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 6 0.27
26 11 0.50
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTTAAAATTTTTTTTATATATTG
Found at i:79599964 original size:130 final size:129
Alignment explanation
Indices: 79599697--79599973 Score: 335
Period size: 130 Copynumber: 2.1 Consensus size: 129
79599687 AGACGAGATT
* * *
79599697 TGATATTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAATTCGTGTTTGCTCAAA
1 TGATGTTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGATTGCAAATTCG-GATTGCTCAAA
* * * *
79599762 ATAATCGAATATCACCTCAAAATTTCACTCATGTCTTTTAAAATCCCTTAAACGAAGGCGATACG
65 ATAATCAAATATCACCTCAAAATTTCACTCAGGTCTTTAAAAATCCCTTAAACGAAGGCAATACG
* * * * * *
79599827 TGATGTTTGGCAATTCGTGGAATCGTGCCCTAATGTGTTGGATTGCAATTTC-GATTGTTTAAAA
1 TGATGTTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGATTGCAAATTCGGATTGCTCAAAA
* * *
79599891 TATTCAAATATC-CCTTCAAAATTTCACTCAGGTCTTCTAAAAATCCTTTAAAACGAAGGTAATA
66 TAATCAAATATCACC-TCAAAATTTCACTCAGGTCTT-TAAAAATCCCTT-AAACGAAGGCAATA
79599955 C-
128 CG
*
79599956 TCGGTGTTTGACAATTCG
1 T-GATGTTTGACAATTCG
79599974 GAAATCATGC
Statistics
Matches: 125, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
127 2 0.02
128 39 0.31
129 11 0.09
130 73 0.58
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (129 bp):
TGATGTTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGATTGCAAATTCGGATTGCTCAAAA
TAATCAAATATCACCTCAAAATTTCACTCAGGTCTTTAAAAATCCCTTAAACGAAGGCAATACG
Found at i:79603308 original size:47 final size:47
Alignment explanation
Indices: 79603234--79603328 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
79603224 GGGAAGCCAT
* *
79603234 AACCCAGATTCGGGAGGTAGCGGACTACTTGCAAACTTTAGCGGTTC
1 AACCCAGATTCGGGAGGTAGCGAACTACTTGCAAACTTTAACGGTTC
79603281 AACCCAGATTCGGGAGGTAGCGAACTACTTGCAAACTTTAACGGTTC
1 AACCCAGATTCGGGAGGTAGCGAACTACTTGCAAACTTTAACGGTTC
79603328 A
1 A
79603329 GGCAGACACA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.23
Consensus pattern (47 bp):
AACCCAGATTCGGGAGGTAGCGAACTACTTGCAAACTTTAACGGTTC
Found at i:79609912 original size:93 final size:93
Alignment explanation
Indices: 79609806--79609977 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
79609796 GCCCATAAGT
* * *
79609806 GAACTCGGACTCAACTCAACGAGCTC-GAGGGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
79609870 ACGAGCTCGGATGCCTAGTTACATCCCTC
65 ACGAGCTCGGATGCCTAGTTACATCCCTC
*
79609899 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
79609964 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
79609978 CAAATATCCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCCCTC
Found at i:79609968 original size:46 final size:46
Alignment explanation
Indices: 79609798--79609973 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
79609788 TGTAACCCGC
* * *
79609798 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGGGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CGCTAGCAT
* *
79609844 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTAGCAT
* *** * *
79609890 ACATCCCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTAGCAT
*
79609937 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
79609974 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 72 0.65
47 38 0.35
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTAGCAT
Found at i:79609992 original size:46 final size:45
Alignment explanation
Indices: 79609849--79609992 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 45
79609839 TGCATCCATA
* *
79609849 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * *
79609897 --TCGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
79609942 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
79609988 AGTGA
1 AGTGA
79609993 CATGTCACTT
Statistics
Matches: 78, Mismatches: 11, Indels: 16
0.74 0.10 0.15
Matches are distributed among these distances:
43 5 0.06
46 38 0.49
47 31 0.40
48 4 0.05
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:79614742 original size:132 final size:132
Alignment explanation
Indices: 79614505--79615225 Score: 1000
Period size: 132 Copynumber: 5.5 Consensus size: 132
79614495 CGAATCCTAC
* * * *
79614505 AGATCTTGTTTCCTTGAAGTTGCACT-GAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGA-A
1 AGATCTCGTTTCCCTGAAGTTGCAGTGGAA-CAGATCGAAGACGGTGAATCTAGGCTTCCTGAGA
* * * *
79614568 GTTGCAGTGAAGCAGATGTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAA
65 -TTGCAGTGAAGCAGATTTGAGCCATCACCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAA
79614633 TTTT
129 TTTT
*
79614637 AGATCTCGTTTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTAGGCTTCCTGTGAT
1 AGATCTCGTTTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTAGGCTTCCTGAGAT
*
79614702 TGCAGTGAAGCAGATTTGAGCCATCACCCTAGCTCCCTAAAGTTGTAGTAGAGTAGGTTGAAATT
66 TGCAGTGAAGCAGATTTGAGCCATCACCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATT
79614767 TT
131 TT
* ** * * * *
79614769 AGATCTCGTTTCCCTGAAGTTGCAGTAGAGTAGATTGAAGACGATGAATCTAGGCTTTCTGAGTT
1 AGATCTCGTTTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTAGGCTTCCTGAGAT
* * *
79614834 TGTAGTGAAGCAGATTTGAGCCATCACTCTAGCTCCCTAAAATTGTAGTGGAGTAGGTTGAAATT
66 TGCAGTGAAGCAGATTTGAGCCATCACCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATT
79614899 TT
131 TT
* * *
79614901 AGATCTCGTTTCCCTAAAGTTGCAGTGGAGCAGATCGAAGATGGTGAATCTAGGCTTCCTGAGAT
1 AGATCTCGTTTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTAGGCTTCCTGAGAT
* *
79614966 TGCAGTGAAGTAGATTTGAGCCATCACCCTAGCTCCCTAAAGTGGTAGTGGAGTAGGTTGAAATT
66 TGCAGTGAAGCAGATTTGAGCCATCACCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATT
79615031 TT
131 TT
* *
79615033 AGATCTCGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGTGAATCTAGGCTTCCTGAGAT
1 AGATCTCGTTTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTAGGCTTCCTGAGAT
* * * * * * *
79615098 TGCAGTG-AGGATGATTTAAGCCACCAACCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCTAAAGA
66 TGCAGTGAAGCA-GATTTGAGCCATCACCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAA-A
*
79615162 TTGT
129 TTTT
* * * ***
79615166 AGATCTTGTTTCCCTG-AGATTGTAGTGGAACAGATCAAAGACGACAAATCTAGGCTTCCT
1 AGATCTCGTTTCCCTGAAG-TTGCAGTGGAACAGATCGAAGACGGTGAATCTAGGCTTCCT
79615226 AATGTTGTAG
Statistics
Matches: 531, Mismatches: 53, Indels: 9
0.90 0.09 0.02
Matches are distributed among these distances:
131 3 0.01
132 469 0.88
133 59 0.11
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (132 bp):
AGATCTCGTTTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTAGGCTTCCTGAGAT
TGCAGTGAAGCAGATTTGAGCCATCACCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATT
TT
Found at i:79618929 original size:130 final size:129
Alignment explanation
Indices: 79618764--79619098 Score: 390
Period size: 130 Copynumber: 2.6 Consensus size: 129
79618754 GACGAGATTT
*
79618764 GATATTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAA
1 GATATTTGACAATTCG-GGAATCATGCCCTAACGTGTTGGGTTGCAATTTC-CGTTTG-TCAAAA
* * *
79618829 TAATCGAATATCACTTCAAAATTTCACTCATGTCTT-TTAAAATCCCTT-AAACGAAGGCGATAC
63 TAATCGAATATCACTTCAAAATTTCACTCAAGTCTTCTAAAAATCCCTTAAAACGAAGGCAATAC
79618892 GC
128 GC
* * *
79618894 GATTTTTGGA-AATTCGTGGAATCATGCCCTAACGTGTTGGGTTGCAATTT-CGATTGTTTAAAA
1 GATATTT-GACAATTCG-GGAATCATGCCCTAACGTGTTGGGTTGCAATTTCCGTTTG-TCAAAA
* * * *
79618957 TAATCAAATATCCCTTCAAAATTTCACTCAAGTCTTCTAAAAATCCTTTAAAACGAAGGTAATAC
63 TAATCGAATATCACTTCAAAATTTCACTCAAGTCTTCTAAAAATCCCTTAAAACGAAGGCAATAC
*
79619022 TC
128 GC
* * * * * ** *
79619024 GGTATTTGACAATTTGGGAATCATGCCTTATCGTGCTGGGTTGTGATTTCTCGTTTGTCTAAAAC
1 GATATTTGACAATTCGGGAATCATGCCCTAACGTGTTGGGTTGCAATTTC-CGTTTGTC-AAAAT
79619089 AATCGAATAT
64 AATCGAATAT
79619099 TCCTTTAGGT
Statistics
Matches: 172, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
128 43 0.25
129 40 0.23
130 69 0.40
131 20 0.12
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (129 bp):
GATATTTGACAATTCGGGAATCATGCCCTAACGTGTTGGGTTGCAATTTCCGTTTGTCAAAATAA
TCGAATATCACTTCAAAATTTCACTCAAGTCTTCTAAAAATCCCTTAAAACGAAGGCAATACGC
Found at i:79626279 original size:49 final size:47
Alignment explanation
Indices: 79626207--79626378 Score: 163
Period size: 49 Copynumber: 3.6 Consensus size: 47
79626197 TGATGTGTGT
*
79626207 GCTAGTGTAAAACCTGTCTGGGACATGGCATCGGCCTCAAGATATGCAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAG-TATG-AA
* * * * *
79626256 GCTAGTGTAAGACCTTTCTGGGACATGGCATCGGCTTGAGGTGTG--
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGTATGAA
* * *
79626301 TC-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGACGTATGGAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTC-AAGTAT-GAA
* * *
79626349 G-TCAGTGTAAGACCTATTTGGGACACGGCA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCA
79626379 ACGACTTAGA
Statistics
Matches: 100, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
44 31 0.31
45 5 0.05
46 1 0.01
48 3 0.03
49 60 0.60
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGTATGAA
Found at i:79626362 original size:93 final size:95
Alignment explanation
Indices: 79626201--79626378 Score: 249
Period size: 93 Copynumber: 1.9 Consensus size: 95
79626191 TTTGGGTGAT
*
79626201 GTGTGTGCTAGTGTAAAACCTGTCTGGGACATGGCATCGGCCTCAAGATATGCAAGCTAGTGTAA
1 GTGTGTGCTAGTGTAAAACCTGTCTGGGACATGGCATCGACCTCAAGATATGCAAGCTAGTGTAA
*
79626266 GACCT-TTCTGGGACATGGCATCGGCTTGAG
66 GACCTATT-TGGGACACGGCATCGGCTTGAG
* * *
79626296 GTGTGT-C-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGACG-TATGGAAG-TCAGTGT
1 GTGTGTGCTAGTGTAAAACCTGTCTGGGACATGGCATCGACCTC-AAGATATGCAAGCT-AGTGT
79626357 AAGACCTATTTGGGACACGGCA
64 AAGACCTATTTGGGACACGGCA
79626379 ACGACTTAGA
Statistics
Matches: 75, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
92 1 0.01
93 63 0.84
94 5 0.07
95 6 0.08
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (95 bp):
GTGTGTGCTAGTGTAAAACCTGTCTGGGACATGGCATCGACCTCAAGATATGCAAGCTAGTGTAA
GACCTATTTGGGACACGGCATCGGCTTGAG
Found at i:79627732 original size:21 final size:22
Alignment explanation
Indices: 79627691--79627732 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
79627681 GTCAAGAAGG
*
79627691 CCACATGGGCGTGTCGCCCCTT
1 CCACATGAGCGTGTCGCCCCTT
79627713 CCACATGAGCGTGT-GCCCCT
1 CCACATGAGCGTGTCGCCCCT
79627733 GTTTCAAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.12, C:0.40, G:0.26, T:0.21
Consensus pattern (22 bp):
CCACATGAGCGTGTCGCCCCTT
Found at i:79632703 original size:42 final size:41
Alignment explanation
Indices: 79632656--79632792 Score: 130
Period size: 42 Copynumber: 3.2 Consensus size: 41
79632646 TCCTGGACTT
* *
79632656 GGTCTTACATGTATTCAGTATCGATGCCTTTGTCCCAGACAG
1 GGTCTTACATGTATTCAG-ATCGATGCCTATGTCCCAGACAC
* * * * * *
79632698 GGTCTTACACGAAATCAGATACGATGCCTATGTCCTAAACAT
1 GGTCTTACATGTATTCAGAT-CGATGCCTATGTCCCAGACAC
* * *
79632740 GGTCTTACATGTAAATCTCAAATCCAGGCCTATGTCCCAGACAC
1 GGTCTTACATGT--AT-TCAGATCGATGCCTATGTCCCAGACAC
79632784 GGTCTTACA
1 GGTCTTACA
79632793 CGATCAATGT
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
41 2 0.03
42 42 0.56
44 26 0.35
45 5 0.07
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (41 bp):
GGTCTTACATGTATTCAGATCGATGCCTATGTCCCAGACAC
Found at i:79635959 original size:27 final size:27
Alignment explanation
Indices: 79635919--79636054 Score: 182
Period size: 27 Copynumber: 5.0 Consensus size: 27
79635909 CCTTGTAGGG
*
79635919 TTCGCCACAGAGGCTTTTCTTTCATGA
1 TTCGCCACAAAGGCTTTTCTTTCATGA
* * *
79635946 TTCACCATAAAGGCTTTACTTTCATGA
1 TTCGCCACAAAGGCTTTTCTTTCATGA
* * *
79635973 TTTGCCACAAGGGTTTTTCTTTCATGA
1 TTCGCCACAAAGGCTTTTCTTTCATGA
* *
79636000 TTCGCCACAAAGGTTTTTCTTTCATGG
1 TTCGCCACAAAGGCTTTTCTTTCATGA
*
79636027 TTCGCCACAAAGGCTTTTATTTCATGA
1 TTCGCCACAAAGGCTTTTCTTTCATGA
79636054 T
1 T
79636055 GGGTTTACGA
Statistics
Matches: 93, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (27 bp):
TTCGCCACAAAGGCTTTTCTTTCATGA
Found at i:79638225 original size:34 final size:34
Alignment explanation
Indices: 79638187--79638254 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
79638177 ATATTAAACT
79638187 AGACTCAATAAGCTTTAATTTCATATTTTATTCA
1 AGACTCAATAAGCTTTAATTTCATATTTTATTCA
*
79638221 AGACTCAATAAGCTTTAATTTCTTATTTTATTCA
1 AGACTCAATAAGCTTTAATTTCATATTTTATTCA
79638255 GCCTCTAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.34, C:0.15, G:0.06, T:0.46
Consensus pattern (34 bp):
AGACTCAATAAGCTTTAATTTCATATTTTATTCA
Found at i:79639097 original size:50 final size:50
Alignment explanation
Indices: 79638905--79639094 Score: 231
Period size: 50 Copynumber: 3.8 Consensus size: 50
79638895 ATCAAAGTTA
* * *
79638905 ATGCCATGTCTCAGACATGGTCTTACAAT-GACTCTCGTATATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATATCGAGGCCG
* * * * *
79638955 GTACCATGTCCCATACATGGTCTTACACTGGCTCTCATCTATCG-GTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAG-GCCG
* * *
79639005 ATGCCATGTCCCAGACATGGTCTTACACTAGCGCTCATATCTCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCG
* *
79639055 ATGCCATGTTCCAGACATGGTCTTACACTAGCTCCCATAT
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
79639095 CTCCCTAGCA
Statistics
Matches: 119, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 1 0.01
50 116 0.97
51 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCG
Found at i:79641733 original size:24 final size:24
Alignment explanation
Indices: 79641701--79641748 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
79641691 TGACATTGTG
79641701 CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGACCATGGCAT
*
79641725 CTAAGTGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGACCATGGCAT
79641749 TATGCTAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.23
Consensus pattern (24 bp):
CTAAGTGAAATAAGACCATGGCAT
Found at i:79641838 original size:51 final size:51
Alignment explanation
Indices: 79641783--79641981 Score: 328
Period size: 51 Copynumber: 3.9 Consensus size: 51
79641773 TGAACCTTAG
* *
79641783 GAATAAAATAGCTATGGACACAAGTGTGGTACTATGTGAAGGTCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
79641834 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
79641885 GAATAAAATAGCTTTGGACACAAGTGTAGTACTATGTGAAGGCCACATTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
79641936 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
79641982 CATGTATCCT
Statistics
Matches: 139, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
50 1 0.01
51 138 0.99
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:79644897 original size:29 final size:29
Alignment explanation
Indices: 79644835--79644954 Score: 179
Period size: 29 Copynumber: 4.2 Consensus size: 29
79644825 ACAAACATGC
* *
79644835 CATATGGCCCACTAGGCCC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCACATT
* *
79644863 CATATGGCCTATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAAATCACATT
* *
79644892 CGTATGGCCCATTAGGCCTAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
79644921 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
79644950 CATAT
1 CATAT
79644955 TCATGCTTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 17 0.21
29 64 0.79
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCACATT
Found at i:79649337 original size:29 final size:29
Alignment explanation
Indices: 79649266--79649390 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
79649256 AAGTCTACAT
* *
79649266 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
** *
79649294 TTATTCATATGGCCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
79649323 ACATTCGTATGGCCCATTAGTCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
79649352 ACATTCATATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
79649381 ACATTCATAT
1 ACATTCATAT
79649391 TCATGCTTTC
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 20 0.24
29 63 0.76
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:79649625 original size:16 final size:16
Alignment explanation
Indices: 79649601--79649635 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
79649591 GTAGCCAAAC
*
79649601 TTTTGGCTTTTCGGCA
1 TTTTAGCTTTTCGGCA
79649617 TTTTAGCTTTTCGGCA
1 TTTTAGCTTTTCGGCA
79649633 TTT
1 TTT
79649636 CGGGATTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.09, C:0.17, G:0.20, T:0.54
Consensus pattern (16 bp):
TTTTAGCTTTTCGGCA
Found at i:79651788 original size:150 final size:150
Alignment explanation
Indices: 79651517--79651813 Score: 585
Period size: 150 Copynumber: 2.0 Consensus size: 150
79651507 TCACATCACA
79651517 GGAGATAATAACATACAAGCATATGAATAATCAAACTACCTTAATAACAAGCCAAAGTCTTTGGC
1 GGAGATAATAACATACAAGCATATGAATAATCAAACTACCTTAATAACAAGCCAAAGTCTTTGGC
79651582 TTAATCATAATATTACATACTCAACTTTACAATCCTATACATGCCATAGACTCGAAACACTAAGA
66 TTAATCATAATATTACATACTCAACTTTACAATCCTATACATGCCATAGACTCGAAACACTAAGA
79651647 TTTTCTTACGCCGATAGCGT
131 TTTTCTTACGCCGATAGCGT
*
79651667 GGAGATAATAACATACAAGCGTATGAATAATCAAACTACCTTAATAACAAGCCAAAGTCTTTGGC
1 GGAGATAATAACATACAAGCATATGAATAATCAAACTACCTTAATAACAAGCCAAAGTCTTTGGC
79651732 TTAATCATAATATTACATACTCAACTTTACAATCCTATACATGCCATAGACTCGAAACACTAAGA
66 TTAATCATAATATTACATACTCAACTTTACAATCCTATACATGCCATAGACTCGAAACACTAAGA
79651797 TTTTCTTACGCCGATAG
131 TTTTCTTACGCCGATAG
79651814 TGTAGACTCG
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 146 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.28
Consensus pattern (150 bp):
GGAGATAATAACATACAAGCATATGAATAATCAAACTACCTTAATAACAAGCCAAAGTCTTTGGC
TTAATCATAATATTACATACTCAACTTTACAATCCTATACATGCCATAGACTCGAAACACTAAGA
TTTTCTTACGCCGATAGCGT
Found at i:79653195 original size:41 final size:43
Alignment explanation
Indices: 79653149--79653285 Score: 147
Period size: 43 Copynumber: 3.2 Consensus size: 43
79653139 ACCAGCACGA
*
79653149 AGCCTGCTAGACTTTAAG-TCTGA-ACTCA-TTCACCGGCATT-T
1 AGCCTGCTAGACTTGAAGCTC-GATA-TCATTTCACCGGCATTAT
* *
79653190 CGCCTGCTAGGCTTGAAGCTCGATATCATTTCACCGGCATTAT
1 AGCCTGCTAGACTTGAAGCTCGATATCATTTCACCGGCATTAT
* ** * * *
79653233 AGCCTGCTAGGCCCGAAGCCCGATATTATCTCACCGGCATTAT
1 AGCCTGCTAGACTTGAAGCTCGATATCATTTCACCGGCATTAT
79653276 AGCCTGCTAG
1 AGCCTGCTAG
79653286 GCCCGAAGCC
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
41 20 0.24
42 15 0.18
43 48 0.58
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (43 bp):
AGCCTGCTAGACTTGAAGCTCGATATCATTTCACCGGCATTAT
Found at i:79653251 original size:43 final size:43
Alignment explanation
Indices: 79653177--79653300 Score: 187
Period size: 43 Copynumber: 2.9 Consensus size: 43
79653167 TCTGAACTCA
* ** *
79653177 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCTCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
79653219 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
79653262 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
79653301 ATATTATTTA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
42 12 0.16
43 63 0.84
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:79653340 original size:86 final size:85
Alignment explanation
Indices: 79653178--79653341 Score: 190
Period size: 86 Copynumber: 1.9 Consensus size: 85
79653168 CTGAACTCAT
* ** * * *
79653178 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCTCGATATCATTTCACCGGCATTATAGCCTGCTAG
1 TCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCAGCATTAAAGCCTGCTAG
79653243 GCCCGAAGCCCGATATTATC
66 GCCCGAAGCCCGATATTATC
* *
79653263 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAAT-ATTATTTACCAGC-TTAAAGCTTG
1 TCACCGGCATT-TAGCCTGCTAGGCCCGAAGCCCGAT-ATCA-T-TTCACCAGCATTAAAGCCTG
*
79653326 CTAGG-CCGAGGCCCGA
62 CTAGGCCCGAAGCCCGA
79653342 ATATCACATT
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
85 11 0.17
86 32 0.48
87 16 0.24
88 7 0.11
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (85 bp):
TCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCAGCATTAAAGCCTGCTAG
GCCCGAAGCCCGATATTATC
Found at i:79661026 original size:21 final size:21
Alignment explanation
Indices: 79660988--79661044 Score: 64
Period size: 20 Copynumber: 2.7 Consensus size: 21
79660978 GTATAATAAT
* *
79660988 AATATAATAGATAAATATAGTGA
1 AATATAATA-ATATATATA-TCA
79661011 AATA-AATAATATATATATCA
1 AATATAATAATATATATATCA
79661031 AA-ATAATAATATAT
1 AATATAATAATATAT
79661045 TGGATAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 1 0.03
20 14 0.45
21 8 0.26
22 4 0.13
23 4 0.13
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (21 bp):
AATATAATAATATATATATCA
Found at i:79661117 original size:19 final size:19
Alignment explanation
Indices: 79661080--79661117 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
79661070 CTTTATAACT
*
79661080 AATATTAAAATATATATAA
1 AATATTAAAATATAAATAA
79661099 AATATTTAAAATA-AAATAA
1 AATA-TTAAAATATAAATAA
79661118 TATAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AATATTAAAATATAAATAA
Found at i:79662868 original size:206 final size:206
Alignment explanation
Indices: 79662509--79663065 Score: 952
Period size: 206 Copynumber: 2.7 Consensus size: 206
79662499 AAATCTGCTT
*
79662509 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* *
79662574 ACGAAAACCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCGAACCATCTT
66 ACGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* *
79662639 GGATCTGCTTCAGTCTAATCATCTAAATGTTAGATCTGCTATGTGTCTACCCTCAGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTACCCTCAGTCAAATATG
79662704 GAGACACCAAA
196 GAGACACCAAA
* *
79662715 CTTCAATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
*
79662780 ACGAAAACCAAATCAGCTATGTCTTCGATTTTCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 ACGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * *
79662845 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATATG
131 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTACCCTCAGTCAAATATG
*
79662910 GAGACGCCAAA
196 GAGACACCAAA
*
79662921 CTTCGATTTGTTCTCTGACGATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* * *
79662986 GCGAAAACCAAATCAGCTATGTCTACGATTTGCTTCCTTGTAAGCACAAGGATACCAAACCGTCT
66 ACGAAAACCAAATCAGCTATGTCTTCGATTTGC-TCCTTGTAAGCACAAGGATACCAAACCATCT
79663051 TGGATCTTGCTTCAG
130 TGGATC-TGCTTCAG
79663066 CCAGATCTGC
Statistics
Matches: 330, Mismatches: 19, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
206 286 0.87
207 36 0.11
208 8 0.02
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
ACGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTACCCTCAGTCAAATATG
GAGACACCAAA
Found at i:79676506 original size:19 final size:19
Alignment explanation
Indices: 79676484--79676525 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
79676474 ATAAGAATAA
79676484 TAAAAGAGA-ACCTTTTTTT
1 TAAAAGAGATA-CTTTTTTT
* *
79676503 TAAATGATATACTTTTTTT
1 TAAAAGAGATACTTTTTTT
79676522 TAAA
1 TAAA
79676526 TGATATATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 19 0.95
20 1 0.05
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (19 bp):
TAAAAGAGATACTTTTTTT
Found at i:79676535 original size:21 final size:19
Alignment explanation
Indices: 79676495--79676532 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
79676485 AAAAGAGAAC
79676495 CTTTTTTTTAAATGATATA
1 CTTTTTTTTAAATGATATA
79676514 CTTTTTTTTAAATGATATA
1 CTTTTTTTTAAATGATATA
79676533 TACATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (19 bp):
CTTTTTTTTAAATGATATA
Found at i:79677134 original size:19 final size:19
Alignment explanation
Indices: 79677097--79677134 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
79677087 CTTTATAACT
*
79677097 AATATTAAAATATATATAA
1 AATATTAAAATATAAATAA
79677116 AATATTTAAAATA-AAATAA
1 AATA-TTAAAATATAAATAA
79677135 TATAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AATATTAAAATATAAATAA
Found at i:79693185 original size:43 final size:42
Alignment explanation
Indices: 79693120--79693226 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 42
79693110 GGCATTTCGC
** ** *
79693120 CTGCTAGGCTTGAAGCTTGATATCATTTCACCAGCATTATAGA
1 CTGCTAGGCCCGAAGCCCGATATCATCTCACCA-CATTATAGA
* * * *
79693163 CTGCTAGGCCCGACGCCCGATATTATCTCACTACATTATAGC
1 CTGCTAGGCCCGAAGCCCGATATCATCTCACCACATTATAGA
79693205 CTGCTAGGCCCGAAGCCCGATA
1 CTGCTAGGCCCGAAGCCCGATA
79693227 ATATTATTCA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 29 0.54
43 25 0.46
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (42 bp):
CTGCTAGGCCCGAAGCCCGATATCATCTCACCACATTATAGA
Found at i:79693255 original size:44 final size:42
Alignment explanation
Indices: 79693118--79693257 Score: 113
Period size: 42 Copynumber: 3.3 Consensus size: 42
79693108 CTGGCATTTC
** ** * * * *
79693118 GCCTGCTAGGCTTGAAGCTTGATATCATTTCACCAGCATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATTATCTCACTA-CATTAAA
* * *
79693161 GACTGCTAGGCCCGACGCCCGATATTATCTCACTACATTATA
1 GCCTGCTAGGCCCGAAGCCCGATATTATCTCACTACATTAAA
79693203 GCCTGCTAGGCCCGAAGCCCGATAATATTAT-TCACTAGC-TTAAA
1 GCCTGCTAGGCCCGAAGCCCG---ATATTATCTCACTA-CATTAAA
*
79693247 GCTTGCTAGGC
1 GCCTGCTAGGC
79693258 TGAGGCCCGA
Statistics
Matches: 80, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
42 26 0.32
43 26 0.32
44 20 0.25
45 8 0.10
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (42 bp):
GCCTGCTAGGCCCGAAGCCCGATATTATCTCACTACATTAAA
Found at i:79696273 original size:13 final size:13
Alignment explanation
Indices: 79696255--79696279 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79696245 TCGACAGGGA
79696255 CACGCCCGTGTGG
1 CACGCCCGTGTGG
79696268 CACGCCCGTGTG
1 CACGCCCGTGTG
79696280 CGATTACTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.36, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGG
Found at i:79698356 original size:27 final size:27
Alignment explanation
Indices: 79698318--79698387 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
79698308 GTGGATGTGT
* *
79698318 TTTGGAGAACTATGTTCACAGATACAA
1 TTTGGTGAACTATGTTCACAAATACAA
* * *
79698345 TTTGGTGGACTATGTTCACAAATATAT
1 TTTGGTGAACTATGTTCACAAATACAA
*
79698372 TTTGGTGAACTGTGTT
1 TTTGGTGAACTATGTT
79698388 TGCATATGTG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
TTTGGTGAACTATGTTCACAAATACAA
Found at i:79698405 original size:27 final size:27
Alignment explanation
Indices: 79698375--79698427 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
79698365 AATATATTTT
** *
79698375 GGTGAACTGTGTTTGCATATGTGTTTG
1 GGTGAACTAAGTTTGCAAATGTGTTTG
79698402 GGTGAACTAAGTTTGCAAATGTGTTT
1 GGTGAACTAAGTTTGCAAATGTGTTT
79698428 TATAAACTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.08, G:0.30, T:0.42
Consensus pattern (27 bp):
GGTGAACTAAGTTTGCAAATGTGTTTG
Found at i:79699489 original size:20 final size:20
Alignment explanation
Indices: 79699443--79699482 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
79699433 GATGTTTTAG
*
79699443 GTGTAAGTCCAATTAACACA
1 GTGTAAGTCCAATGAACACA
79699463 GTGTAAGTCCAATGAACACA
1 GTGTAAGTCCAATGAACACA
79699483 TGATAAGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (20 bp):
GTGTAAGTCCAATGAACACA
Found at i:79707256 original size:29 final size:28
Alignment explanation
Indices: 79707224--79707278 Score: 101
Period size: 29 Copynumber: 1.9 Consensus size: 28
79707214 GCGAGATAAA
79707224 CTGATTTGGCTTCAGGCCATGCATATCGG
1 CTGATTTGGCTTCAGGCCATG-ATATCGG
79707253 CTGATTTGGCTTCAGGCCATGATATC
1 CTGATTTGGCTTCAGGCCATGATATC
79707279 AGAATTTTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.18, C:0.24, G:0.25, T:0.33
Consensus pattern (28 bp):
CTGATTTGGCTTCAGGCCATGATATCGG
Found at i:79712433 original size:15 final size:15
Alignment explanation
Indices: 79712413--79712481 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
79712403 GTATCTTGGG
79712413 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* **
79712428 TCTCTTTATTTTGGA
1 TTTCTTTATCCTGGA
* *
79712443 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
79712458 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
79712473 TTTCTTTAT
1 TTTCTTTAT
79712482 TCAGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.12, C:0.16, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:79712482 original size:30 final size:30
Alignment explanation
Indices: 79712404--79712483 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 30
79712394 CATAATATCG
* * *
79712404 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* * *
79712434 TATTTTGGATTTCTTTATTCTGGGTTTCTC
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
79712464 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
79712484 AGTTTTCTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.11, C:0.16, G:0.15, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:79715970 original size:53 final size:53
Alignment explanation
Indices: 79715912--79716018 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
79715902 TGAAAAGTTT
*
79715912 TAAATTTGGATGAAAATTCATGTCTCGGTTTTGATTGTTTGAATGATTTTAAG
1 TAAATTTGGATGAAAATTCATGTCTCGGTTTTGATTGTTTGAATGAGTTTAAG
79715965 TAAATTTGGATGAAAATTCATGTCTCGGTTTTGATTGTTTGAATGAGTTTAAG
1 TAAATTTGGATGAAAATTCATGTCTCGGTTTTGATTGTTTGAATGAGTTTAAG
79716018 T
1 T
79716019 TTGGTAATGC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.28, C:0.06, G:0.21, T:0.45
Consensus pattern (53 bp):
TAAATTTGGATGAAAATTCATGTCTCGGTTTTGATTGTTTGAATGAGTTTAAG
Found at i:79731014 original size:39 final size:39
Alignment explanation
Indices: 79730960--79731085 Score: 171
Period size: 39 Copynumber: 3.2 Consensus size: 39
79730950 TTCAGTGATG
*
79730960 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
79730999 TATATTCGGACTTAGGATCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * ** *
79731038 TATATCCAGACTTAAGGTCCGCAGGCTACATGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
79731077 TATGTCCGG
1 TATATCCGG
79731086 GCTAAAGTCC
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:79731101 original size:78 final size:78
Alignment explanation
Indices: 79730960--79731103 Score: 173
Period size: 78 Copynumber: 1.8 Consensus size: 78
79730950 TTCAGTGATG
* * * ** * * * *
79730960 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTATATTCGGACTTAGGATCCGCAGGC
1 TATATCCAGACTTAAGGTCCGCAGGCTACATGCTGGAAATATATCCGGACTAAAGATCCGCAGGC
79731025 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* *
79731038 TATATCCAGACTTAAGGTCCGCAGGCTACATGCTGGAAATATGTCCGGGCTAAAG-TCCTGCAGG
1 TATATCCAGACTTAAGGTCCGCAGGCTACATGCTGGAAATATATCCGGACTAAAGATCC-GCAGG
79731102 CT
65 CT
79731104 TCGAGCTGGT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
77 3 0.06
78 51 0.94
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (78 bp):
TATATCCAGACTTAAGGTCCGCAGGCTACATGCTGGAAATATATCCGGACTAAAGATCCGCAGGC
TATGTGCTGGAAT
Found at i:79737997 original size:27 final size:27
Alignment explanation
Indices: 79737941--79738065 Score: 178
Period size: 27 Copynumber: 4.6 Consensus size: 27
79737931 TAAATTGTGC
*
79737941 AGCACTAAGTGTACGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
79737969 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
79737996 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* * *
79738024 AGCACTAAGTGTCCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
79738051 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79738066 GACTTAATAA
Statistics
Matches: 90, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
27 49 0.54
28 41 0.46
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:79738063 original size:55 final size:55
Alignment explanation
Indices: 79737941--79738065 Score: 187
Period size: 55 Copynumber: 2.3 Consensus size: 55
79737931 TAAATTGTGC
* * * *
79737941 AGCACTAAGTGTACGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTCCGAGTTGACTATAT
* *
79737996 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTCCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTCCGAGTTGACTATAT
*
79738051 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79738066 GACTTAATAA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 63 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTCCGAGTTGACTATAT
Found at i:79742095 original size:39 final size:39
Alignment explanation
Indices: 79742041--79742166 Score: 164
Period size: 39 Copynumber: 3.2 Consensus size: 39
79742031 TTCAGTGATG
*
79742041 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
79742080 TATATCCGGACTTAGGGTCCGC-GAGCTATATGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAG-GCTATGTGCTGGAAT
* * * * *
79742119 TACATCCGGACTTAAGGTCCGCAAGCTACGTGCTGGAAC
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
79742158 TATGTCCGG
1 TATATCCGG
79742167 GCTAAAGTCC
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
38 1 0.01
39 74 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:79742193 original size:39 final size:39
Alignment explanation
Indices: 79742150--79742224 Score: 89
Period size: 39 Copynumber: 1.9 Consensus size: 39
79742140 CAAGCTACGT
*
79742150 GCTGGAACTATGTCCGGG-CTAAAGTCCCGCAGGCTTCGA
1 GCTGGAACTAT-ACCGGGTCTAAAGTCCCGCAGGCTTCGA
* * * *
79742189 GCTGGTATTATACCGGGTTTAAATTCCCGCAGGCTT
1 GCTGGAACTATACCGGGTCTAAAGTCCCGCAGGCTT
79742225 GTGCTGGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
38 5 0.17
39 25 0.83
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.27
Consensus pattern (39 bp):
GCTGGAACTATACCGGGTCTAAAGTCCCGCAGGCTTCGA
Found at i:79743794 original size:93 final size:93
Alignment explanation
Indices: 79743682--79743853 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
79743672 GCCCATAAGT
* * * *
79743682 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
79743747 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
*
79743775 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
79743840 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
79743854 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:79743849 original size:46 final size:46
Alignment explanation
Indices: 79743674--79743849 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
79743664 TGTAACCCGC
* *
79743674 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
79743720 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--AGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
79743766 ACATCTCTCGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
79743813 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
79743850 TGCCCAAATA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.63
47 29 0.28
49 5 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:79754142 original size:46 final size:47
Alignment explanation
Indices: 79754070--79754434 Score: 214
Period size: 46 Copynumber: 7.8 Consensus size: 47
79754060 GGTGGTATGT
* * *
79754070 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT-CATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATAGATGA
* *
79754116 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT--TGAGACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAT-AGATGA
* ** * * *
79754162 GAGCTAGTGTAAGACATGTCTAAGAGATGCATCGGCCTCA-GGATATA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATAGAT-GA
* * * * * * *
79754209 CAACCTAGTGTAAGACCTGTCTGGGACATGGCGTCAG-CTTAT-TAT--
1 GAGCC-AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCATAGATGA
* * * * * * * *
79754254 GTGTCAGTGTAAGACCTGTCTAGGACACGGCATCGACC-GATAGAGGA
1 GAGCCAGTGTAAGACATGTCTGGGACA-TGCATCGGCCTCATAGATGA
* * *
79754301 GAGCCAGTGTAAGACCTATCTGGGACATGGCATCGGCCTCGATATATGA
1 GAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTC-ATAGATGA
* * * * * *
79754350 AAGTCAGTGTAAGACTTGTCTGGGACATGGCATC-GACT-TTA-ATGT
1 GAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCATAGATGA
*
79754395 GCTAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 G--AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
79754435 ATCTTATCCC
Statistics
Matches: 242, Mismatches: 57, Indels: 37
0.72 0.17 0.11
Matches are distributed among these distances:
44 28 0.12
45 6 0.02
46 75 0.31
47 46 0.19
48 45 0.19
49 42 0.17
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATAGATGA
Found at i:79754327 original size:47 final size:48
Alignment explanation
Indices: 79754258--79754432 Score: 169
Period size: 47 Copynumber: 3.6 Consensus size: 48
79754248 TATTATGTGT
* * *
79754258 CAGTGTAAGACCTGTCTAGGACACGGCATCGAC-CGATAGAGGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTCGATAGAGGAAAGC
* * * * *
79754305 CAGTGTAAGACCTATCTGGGACATGGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATC-GACTCGATAGAGGAAAGC
* * **
79754354 CAGTGTAAGACTTGTCTGGGACATGGCATCGACT--TTA-ATGTGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTCGATAGA-G-GAAAGC
*
79754401 CAGTGTAAGACCATGTTTGGGACATGGCATCG
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCG
79754433 GCATCTTATC
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 2 0.02
47 41 0.39
48 23 0.22
49 38 0.36
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACTCGATAGAGGAAAGC
Found at i:79754382 original size:96 final size:92
Alignment explanation
Indices: 79754215--79754434 Score: 239
Period size: 96 Copynumber: 2.3 Consensus size: 92
79754205 TATACAACCT
* * * *
79754215 AGTGTAAGACCTGTCTGGGACATGGCGTCAG-CTTATTATGTGTCAGTGTAAGACCTGTCTAGGA
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTGATTATGAGTCAGTGTAAGACCTGTCTAGGA
79754279 CACGGCATCGACCGATAGA-G-GAGAGCC
66 CACGGCATCGA-CGATA-ATGTGAGAGCC
* *
79754306 AGTGTAAGACCTATCTGGGACATGGCATCGGCCTCGATATATGAAAGTCAGTGTAAGACTTGTCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCT-GAT-TATG--AGTCAGTGTAAGACCTGTCT
* * ** **
79754371 GGGACATGGCATCGACTTTAATGTGCTAGCC
62 AGGACACGGCATCGACGATAATGTGAGAGCC
*
79754402 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGGC
79754435 ATCTTATCCC
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
91 28 0.26
92 2 0.02
93 2 0.02
94 5 0.05
95 4 0.04
96 47 0.44
97 19 0.18
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (92 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTGATTATGAGTCAGTGTAAGACCTGTCTAGGA
CACGGCATCGACGATAATGTGAGAGCC
Found at i:79755657 original size:20 final size:21
Alignment explanation
Indices: 79755618--79755657 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79755608 GTCAACAGGG
*
79755618 CCACATGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
79755639 CCACACGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
79755658 ATTTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:79761799 original size:21 final size:22
Alignment explanation
Indices: 79761759--79761800 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
79761749 TGTTGAAATG
79761759 TCACACGAGCATGTTGCCCCTC
1 TCACACGAGCATGTTGCCCCTC
*
79761781 TCACACGAGCGTG-TGCCCCT
1 TCACACGAGCATGTTGCCCCT
79761801 GTGTTAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.17, C:0.40, G:0.21, T:0.21
Consensus pattern (22 bp):
TCACACGAGCATGTTGCCCCTC
Found at i:79764758 original size:13 final size:13
Alignment explanation
Indices: 79764740--79764767 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79764730 TTTCCAACAC
79764740 TTATGACATGTGG
1 TTATGACATGTGG
79764753 TTATGACATGTGG
1 TTATGACATGTGG
79764766 TT
1 TT
79764768 GAATGGCGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.29, T:0.43
Consensus pattern (13 bp):
TTATGACATGTGG
Found at i:79769454 original size:26 final size:26
Alignment explanation
Indices: 79769415--79769483 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 26
79769405 TAAACATAGT
* *
79769415 TGCTCATACAAGCTGTGAAATAAGTA
1 TGCTCACACGAGCTGTGAAATAAGTA
* ** *
79769441 TGCTCACATGAGCTGTGAAATGGGTC
1 TGCTCACACGAGCTGTGAAATAAGTA
79769467 TGCTCACACGAGCTGTG
1 TGCTCACACGAGCTGTG
79769484 GGTTGGAATG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TGCTCACACGAGCTGTGAAATAAGTA
Found at i:79780665 original size:2 final size:2
Alignment explanation
Indices: 79780627--79780656 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
79780617 ATAATAAAAA
79780627 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
79780657 TTGAGAGAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:79780678 original size:18 final size:19
Alignment explanation
Indices: 79780655--79780693 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
79780645 AGAGAGAGAG
*
79780655 AGTTGAGAGAGGAA-TAAA
1 AGTTGAGAGAGAAATTAAA
*
79780673 AGTTGAGTGAGAAATTAAA
1 AGTTGAGAGAGAAATTAAA
79780692 AG
1 AG
79780694 GGAATTGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.49, C:0.00, G:0.31, T:0.21
Consensus pattern (19 bp):
AGTTGAGAGAGAAATTAAA
Found at i:79787154 original size:23 final size:22
Alignment explanation
Indices: 79787128--79787176 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
79787118 AAATACGTTC
*
79787128 TATTC-TTACTCTCTTATTTTCTT
1 TATTCTTTACT-TCTTATCTT-TT
79787151 TATTCTTTACTTCTTATCTTTT
1 TATTCTTTACTTCTTATCTTTT
79787173 TATT
1 TATT
79787177 TTATAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 6 0.25
23 13 0.54
24 5 0.21
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.67
Consensus pattern (22 bp):
TATTCTTTACTTCTTATCTTTT
Found at i:79793043 original size:31 final size:31
Alignment explanation
Indices: 79793005--79793080 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
79792995 TGCCCCAAGT
* * *
79793005 TACACGGGCGTGTGAGT-CTACATGTCCTACC
1 TACACGGGCGTGTGAGTCCT-CACGGCCCACC
*
79793036 TACACGGGCGTGTGAGTCCTCACGGCCCACG
1 TACACGGGCGTGTGAGTCCTCACGGCCCACC
79793067 TACACGGGCGTGTG
1 TACACGGGCGTGTG
79793081 TCCCTTTATG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 38 0.95
32 2 0.05
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (31 bp):
TACACGGGCGTGTGAGTCCTCACGGCCCACC
Found at i:79795818 original size:17 final size:17
Alignment explanation
Indices: 79795793--79795828 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
79795783 TGCAATGGAA
*
79795793 AATGATATTGAAATGGC
1 AATGATATTGAAATAGC
*
79795810 AATGCTATTGAAATAGC
1 AATGATATTGAAATAGC
79795827 AA
1 AA
79795829 ATGTTATGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.28
Consensus pattern (17 bp):
AATGATATTGAAATAGC
Found at i:79810628 original size:12 final size:13
Alignment explanation
Indices: 79810599--79810628 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
79810589 AGAAAAGAGA
79810599 AAAAACTATAAAC
1 AAAAACTATAAAC
*
79810612 AAAAACTATAAAG
1 AAAAACTATAAAC
79810625 AAAA
1 AAAA
79810629 TTATATAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.73, C:0.10, G:0.03, T:0.13
Consensus pattern (13 bp):
AAAAACTATAAAC
Found at i:79813266 original size:39 final size:39
Alignment explanation
Indices: 79813174--79813273 Score: 130
Period size: 39 Copynumber: 2.6 Consensus size: 39
79813164 AAAATCCTTG
* * *
79813174 TTATAATTATTGTAATTATAA-TTTACGATCGAATATTA
1 TTATAATTATTGTAATTATAATTTTACGATCAAACATGA
* * *
79813212 TTATAATTATTGTAATTACAATTTTTCGGTCAAACATGA
1 TTATAATTATTGTAATTATAATTTTACGATCAAACATGA
*
79813251 TTATAATTATGGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
79813274 GTTATATTCG
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
38 20 0.38
39 33 0.62
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (39 bp):
TTATAATTATTGTAATTATAATTTTACGATCAAACATGA
Found at i:79816122 original size:67 final size:67
Alignment explanation
Indices: 79815898--79816105 Score: 222
Period size: 67 Copynumber: 3.1 Consensus size: 67
79815888 GAGGTTTAAA
* * * * * ** * * * *
79815898 GTGTAAGACCATAGTTCGATTATGGTAACCAATGGAGTCCATCAGGATATTAAACATAGGGATTA
1 GTGTAAGATCATAGCTCGACTATGGCATCCAACAGAGTCAACCAGGACATTAAACATAGGGATCA
79815963 AG
66 AG
* * * *
79815965 GTTTAAGATTATAACTCGACTATGGCATCCAACAGAGTCAACCAAGACATTAAACA-AGAGGATT
1 GTGTAAGATCATAGCTCGACTATGGCATCCAACAGAGTCAACCAGGACATTAAACATAG-GGA-T
79816029 CAA-
64 CAAG
* **
79816032 GTGTAGGATCATAGCTCGACTATGGCATCCAACAGAGTTTACCAGGACATTAAACATAGGGATCA
1 GTGTAAGATCATAGCTCGACTATGGCATCCAACAGAGTCAACCAGGACATTAAACATAGGGATCA
79816097 AG
66 AG
79816099 GTGTAAG
1 GTGTAAG
79816106 CCCATGGCTT
Statistics
Matches: 114, Mismatches: 23, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
66 6 0.05
67 103 0.90
68 5 0.04
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (67 bp):
GTGTAAGATCATAGCTCGACTATGGCATCCAACAGAGTCAACCAGGACATTAAACATAGGGATCA
AG
Found at i:79820301 original size:40 final size:40
Alignment explanation
Indices: 79820225--79820326 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 40
79820215 GTGTTTGGAT
* * *
79820225 AAAAAACGCTGCTAAAGATCGAGCATTAGTAGCGCTTCTT-
1 AAAAAACGCCGCTATAGATCGAGCATTAGGAGCGCTT-TTC
*
79820265 GAAAAACGCCGCTATAGATCGAGCATTAGCGA-CGCTTTTC
1 AAAAAACGCCGCTATAGATCGAGCATTAG-GAGCGCTTTTC
* *
79820305 AAAAAATGCCGCTATAGCTCGA
1 AAAAAACGCCGCTATAGATCGA
79820327 CTACTAGCGG
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 2 0.04
40 50 0.94
41 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (40 bp):
AAAAAACGCCGCTATAGATCGAGCATTAGGAGCGCTTTTC
Found at i:79820343 original size:40 final size:40
Alignment explanation
Indices: 79820266--79820343 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
79820256 GCGCTTCTTG
* *
79820266 AAAAACGCCGCTATAGATCGAGCATTAGCGACGCTTTTCA
1 AAAAACGCCGCTATAGATCGAGCACTAGCGACACTTTTCA
* * *
79820306 AAAAATGCCGCTATAGCTCGA-CTACTAGCGGCACTTTT
1 AAAAACGCCGCTATAGATCGAGC-ACTAGCGACACTTTT
79820344 TGAAAACTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.03
40 31 0.97
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCGAGCACTAGCGACACTTTTCA
Found at i:79820427 original size:40 final size:40
Alignment explanation
Indices: 79820383--79820489 Score: 164
Period size: 38 Copynumber: 2.7 Consensus size: 40
79820373 AACTTTAGTG
79820383 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* * *
79820423 GCATTAGCGGCGC-TTTT-AAAAAAGCCGCTATAGGTTGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
*
79820461 CCATTAGCGGCGCTTTTTGAAAAACGCCG
1 GCATTAGCGGCGCTTTTTGAAAAACGCCG
79820490 AAAAAAAATT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 30 0.50
39 8 0.13
40 22 0.37
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
Found at i:79820497 original size:136 final size:136
Alignment explanation
Indices: 79820247--79820497 Score: 353
Period size: 136 Copynumber: 1.9 Consensus size: 136
79820237 TAAAGATCGA
*
79820247 GCATTAGTAGCGCTTCTTGAAAAACGCCGCTATAGATCGAGCATTAGCGACGCTTTTCAAAAAAT
1 GCATTAGCAGCGCTTCTTGAAAAACGCCGCTATAGATCGAGCATTAGCGACGCTTTTCAAAAAAT
* ** **
79820312 GCCGCTATAGCTCGACTACTAGCGGCACTTTTTGAAAACTTCAGCAAAAAAATTTACACTCAACT
66 GCCGCTATAGCTCGACCACTAGCGGCACTTTTTGAAAACGCCAAAAAAAAAATTTACACTCAACT
79820377 TTAGTG
131 TTAGTG
* * *
79820383 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTT-AAAAAA-
1 GCATTAGCAGCGCTTCTTGAAAAACGCCGCTATAGATCGAGCATTAGCGACGCTTTTCAAAAAAT
* * * * *
79820446 GCCGCTATAGGTTGACCATTAGCGGCGCTTTTTGAAAAACGCCGAAAAAAAA
66 GCCGCTATAGCTCGACCACTAGCGGCACTTTTTG-AAAACGCCAAAAAAAAA
79820498 TTAAGCACAA
Statistics
Matches: 100, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
134 29 0.29
135 18 0.18
136 53 0.53
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (136 bp):
GCATTAGCAGCGCTTCTTGAAAAACGCCGCTATAGATCGAGCATTAGCGACGCTTTTCAAAAAAT
GCCGCTATAGCTCGACCACTAGCGGCACTTTTTGAAAACGCCAAAAAAAAAATTTACACTCAACT
TTAGTG
Found at i:79820799 original size:7 final size:7
Alignment explanation
Indices: 79820789--79820863 Score: 62
Period size: 7 Copynumber: 10.6 Consensus size: 7
79820779 AGAGTACTAT
*
79820789 TTTAAGG
1 TTTATGG
79820796 TTTATGG
1 TTTATGG
*
79820803 ATTATGG
1 TTTATGG
*
79820810 ATTTAGGG
1 -TTTATGG
*
79820818 ATTATGG
1 TTTATGG
79820825 TTTATGG
1 TTTATGG
79820832 TTTATGG
1 TTTATGG
*
79820839 TTTTAGGG
1 -TTTATGG
*
79820847 TTT-GGG
1 TTTATGG
*
79820853 TTTAAGG
1 TTTATGG
79820860 TTTA
1 TTTA
79820864 GATGTTAGGA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
6 6 0.11
7 39 0.70
8 11 0.20
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (7 bp):
TTTATGG
Found at i:79820836 original size:14 final size:14
Alignment explanation
Indices: 79820734--79820863 Score: 68
Period size: 14 Copynumber: 9.2 Consensus size: 14
79820724 TTAATTATTG
* *
79820734 TTATAGTTTAGGGT
1 TTATGGTTTATGGT
* *
79820748 TTATGGTATATAGT
1 TTATGGTTTATGGT
* *
79820762 TTAGGGTTTAAGGT
1 TTATGGTTTATGGT
* *
79820776 TTAAGAGTACTAT--T
1 TTATG-GT-TTATGGT
* *
79820790 TTAAGGTTTATGGA
1 TTATGGTTTATGGT
* *
79820804 TTATGGATTTAGGGA
1 TTATGG-TTTATGGT
79820819 TTATGGTTTATGGT
1 TTATGGTTTATGGT
*
79820833 TTATGGTTTTAGGGT
1 TTATGG-TTTATGGT
* *
79820848 TT-GGGTTTAAGGT
1 TTATGGTTTATGGT
79820861 TTA
1 TTA
79820864 GATGTTAGGA
Statistics
Matches: 89, Mismatches: 20, Indels: 14
0.72 0.16 0.11
Matches are distributed among these distances:
12 3 0.03
13 11 0.12
14 49 0.55
15 24 0.27
16 2 0.02
ACGTcount: A:0.23, C:0.01, G:0.28, T:0.48
Consensus pattern (14 bp):
TTATGGTTTATGGT
Found at i:79820836 original size:29 final size:28
Alignment explanation
Indices: 79820794--79820888 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 28
79820784 ACTATTTTAA
*
79820794 GGTTTATGGATTATGGATTTAGGGATTAT
1 GGTTTATGGTTTATGGATTTAGGG-TTAT
*
79820823 GGTTTATGGTTTATGGTTTTAGGGTT-T
1 GGTTTATGGTTTATGGATTTAGGGTTAT
* *
79820850 GGGTTTAAGGTTTA--GATGTTAGGAGTTTAA
1 -GGTTTATGGTTTATGGAT-TTAGG-G-TTAT
79820880 GGTTTATGG
1 GGTTTATGG
79820889 GATATGTTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
26 2 0.04
27 6 0.11
28 15 0.27
29 32 0.58
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (28 bp):
GGTTTATGGTTTATGGATTTAGGGTTAT
Found at i:79820848 original size:15 final size:14
Alignment explanation
Indices: 79820789--79820885 Score: 63
Period size: 15 Copynumber: 6.8 Consensus size: 14
79820779 AGAGTACTAT
* *
79820789 TTTAAGGTTTATGG
1 TTTATGGTTTAGGG
*
79820803 ATTATGGATTTAGGG
1 TTTATGG-TTTAGGG
* *
79820818 ATTATGGTTTATGG
1 TTTATGGTTTAGGG
79820832 TTTATGGTTTTAGGG
1 TTTATGG-TTTAGGG
* *
79820847 TTT-GGGTTTAAGG
1 TTTATGGTTTAGGG
*
79820860 TTTA-GATGTTAGGAG
1 TTTATGGT-TTAGG-G
*
79820875 TTTAAGGTTTA
1 TTTATGGTTTA
79820886 TGGGATATGT
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
13 11 0.17
14 23 0.35
15 30 0.45
16 2 0.03
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (14 bp):
TTTATGGTTTAGGG
Found at i:79820939 original size:14 final size:14
Alignment explanation
Indices: 79820811--79820943 Score: 56
Period size: 14 Copynumber: 9.4 Consensus size: 14
79820801 GGATTATGGA
* *
79820811 TTTAGGGATTATGG
1 TTTAGGGTTTAGGG
* *
79820825 TTTATGGTTTATGGT
1 TTTAGGGTTTA-GGG
79820840 TTTAGGGTTT-GGG
1 TTTAGGGTTTAGGG
* *
79820853 TTTAAGGTTTA-GA
1 TTTAGGGTTTAGGG
*
79820866 TGTTAGGAGTTTAAGG
1 T-TTAGG-GTTTAGGG
* * *
79820882 TTTATGGG-ATATGT
1 TTTA-GGGTTTAGGG
*** *
79820896 TTTATAATTTAGGA
1 TTTAGGGTTTAGGG
**
79820910 TTTAGGGGATAGGGG
1 TTTAGGGTTTA-GGG
79820925 TTTAGGGTTTAGGG
1 TTTAGGGTTTAGGG
79820939 TTTAG
1 TTTAG
79820944 AGTAATAAGT
Statistics
Matches: 84, Mismatches: 27, Indels: 16
0.66 0.21 0.13
Matches are distributed among these distances:
13 13 0.15
14 37 0.44
15 30 0.36
16 4 0.05
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (14 bp):
TTTAGGGTTTAGGG
Found at i:79825984 original size:19 final size:18
Alignment explanation
Indices: 79825934--79826007 Score: 60
Period size: 19 Copynumber: 3.9 Consensus size: 18
79825924 CTTGCTGTAT
79825934 TTTATTTATATTTTTA-TA
1 TTTATTT-TATTTTTATTA
* *
79825952 TTTAATCTAATTTTTATTA
1 TTT-ATTTTATTTTTATTA
* *
79825971 TTTATTTTAGTTTTGATTC
1 TTTATTTTA-TTTTTATTA
*
79825990 TATATTTTTATTTTTATT
1 TTTA-TTTTATTTTTATT
79826008 TTAATATTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
18 14 0.32
19 25 0.57
20 5 0.11
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (18 bp):
TTTATTTTATTTTTATTA
Found at i:79830319 original size:106 final size:106
Alignment explanation
Indices: 79830133--79830449 Score: 582
Period size: 106 Copynumber: 3.0 Consensus size: 106
79830123 GACATCCAAG
* *
79830133 GGGAGTGTTATGAATATCTTATTAAGTGGATGTCCATCAT-AGTCAAGATAAAGTTTTAATGTAC
1 GGGAGTATTATGAATATCTTATTAAGTGGATG-CCATCATGA-TCAAGATAAAGTTTTAATATAC
79830197 TTTAAATTCTAATAGTTATTAGAATAGATCTCTACTTCTATGA
64 TTTAAATTCTAATAGTTATTAGAATAGATCTCTACTTCTATGA
79830240 GGGAGTATTATGAATATCTTATTAAGTGGATGCCATCATGATCAAGATAAAGTTTTAATATACTT
1 GGGAGTATTATGAATATCTTATTAAGTGGATGCCATCATGATCAAGATAAAGTTTTAATATACTT
79830305 TAAATTCTAATAGTTATTAGAATAGATCTCTACTTCTATGA
66 TAAATTCTAATAGTTATTAGAATAGATCTCTACTTCTATGA
*
79830346 GGAAGTATTATGAATATCTTATTAAGTGGATGCCATCATGATCAAGATAAAGTTTTAATATACTT
1 GGGAGTATTATGAATATCTTATTAAGTGGATGCCATCATGATCAAGATAAAGTTTTAATATACTT
79830411 TAAATTCTAATAGTTATTAGAATAGATCTCTACTTCTAT
66 TAAATTCTAATAGTTATTAGAATAGATCTCTACTTCTAT
79830450 TATACTTCTT
Statistics
Matches: 206, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
106 174 0.84
107 32 0.16
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.39
Consensus pattern (106 bp):
GGGAGTATTATGAATATCTTATTAAGTGGATGCCATCATGATCAAGATAAAGTTTTAATATACTT
TAAATTCTAATAGTTATTAGAATAGATCTCTACTTCTATGA
Found at i:79830947 original size:19 final size:17
Alignment explanation
Indices: 79830923--79830966 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 17
79830913 TTTATACTTG
*
79830923 TTTAAATAATTTTAATTTT
1 TTTAAATAATTAT-A-TTT
79830942 TTTAAAATAATTATATTT
1 TTT-AAATAATTATATTT
79830960 TTTAAAT
1 TTTAAAT
79830967 TTTTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 4 0.17
18 6 0.26
19 4 0.17
20 9 0.39
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTAAATAATTATATTT
Found at i:79831626 original size:30 final size:29
Alignment explanation
Indices: 79831590--79831648 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
79831580 ACTTAACAAG
*
79831590 CAAATGT-TTCTAAAATAATAACAAAATTAA
1 CAAATGTCTT-TAAAATAA-AAAAAAATTAA
79831620 CAAATGTCTTTAAAATAAAAAAAAATTAA
1 CAAATGTCTTTAAAATAAAAAAAAATTAA
79831649 TAATAAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 10 0.37
30 15 0.56
31 2 0.07
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.29
Consensus pattern (29 bp):
CAAATGTCTTTAAAATAAAAAAAAATTAA
Found at i:79831706 original size:22 final size:22
Alignment explanation
Indices: 79831680--79831750 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
79831670 ATATTCAAAT
79831680 AATAACAACAAAATAATAGCAA
1 AATAACAACAAAATAATAGCAA
* * * *
79831702 TATAATAATAAAATAGTAGCAA
1 AATAACAACAAAATAATAGCAA
** *
79831724 AATAAGGAGAAAATAATAAG-AA
1 AATAACAACAAAATAAT-AGCAA
79831746 AATAA
1 AATAA
79831751 TATTAAAAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 37 0.95
23 2 0.05
ACGTcount: A:0.66, C:0.06, G:0.10, T:0.18
Consensus pattern (22 bp):
AATAACAACAAAATAATAGCAA
Found at i:79831725 original size:11 final size:11
Alignment explanation
Indices: 79831688--79831752 Score: 53
Period size: 11 Copynumber: 5.9 Consensus size: 11
79831678 ATAATAACAA
79831688 CAAAATAATAG
1 CAAAATAATAG
* *
79831699 CAATATAATAA
1 CAAAATAATAG
* *
79831710 TAAAATAGTAG
1 CAAAATAATAG
*
79831721 CAAAATAAGGAG
1 CAAAATAA-TAG
79831733 -AAAATAATAAG
1 CAAAATAAT-AG
79831744 -AAAATAATA
1 CAAAATAATA
79831753 TTAAAAAAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 5
0.74 0.18 0.09
Matches are distributed among these distances:
10 1 0.02
11 39 0.93
12 2 0.05
ACGTcount: A:0.65, C:0.05, G:0.11, T:0.20
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:79837530 original size:22 final size:22
Alignment explanation
Indices: 79837504--79837559 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
79837494 CGGATTTTAA
* *
79837504 TACTGTTGTTTTTCCATTGTTT
1 TACTGTTATTTTTCCACTGTTT
*
79837526 TACTGTTATTTTTTCACTGTTT
1 TACTGTTATTTTTCCACTGTTT
*
79837548 TGCTGTTATTTT
1 TACTGTTATTTT
79837560 ACTATTATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.11, C:0.12, G:0.12, T:0.64
Consensus pattern (22 bp):
TACTGTTATTTTTCCACTGTTT
Found at i:79838852 original size:20 final size:20
Alignment explanation
Indices: 79838829--79838876 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
79838819 ATTATCTAGT
79838829 TTTTGCTCATTTTTAGCTCA
1 TTTTGCTCATTTTTAGCTCA
79838849 TTTTGCTCATTTTTAGCTCA
1 TTTTGCTCATTTTTAGCTCA
79838869 TTTTGCTC
1 TTTTGCTC
79838877 CCAAATGCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.12, C:0.21, G:0.10, T:0.56
Consensus pattern (20 bp):
TTTTGCTCATTTTTAGCTCA
Found at i:79838856 original size:9 final size:10
Alignment explanation
Indices: 79838828--79838876 Score: 66
Period size: 10 Copynumber: 4.9 Consensus size: 10
79838818 AATTATCTAG
79838828 TTTTTGCTCA
1 TTTTTGCTCA
79838838 TTTTTAGCTCA
1 TTTTT-GCTCA
79838849 -TTTTGCTCA
1 TTTTTGCTCA
79838858 TTTTTAGCTCA
1 TTTTT-GCTCA
79838869 -TTTTGCTC
1 TTTTTGCTC
79838877 CCAAATGCTC
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.25
10 17 0.47
11 10 0.28
ACGTcount: A:0.12, C:0.20, G:0.10, T:0.57
Consensus pattern (10 bp):
TTTTTGCTCA
Found at i:79840559 original size:20 final size:20
Alignment explanation
Indices: 79840536--79840583 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
79840526 ATTATCTAGT
*
79840536 TTTTGCTCATTTTTAGCTTA
1 TTTTGCTCATTTTTAGCTCA
79840556 TTTTGCTCATTTTTAGCTCA
1 TTTTGCTCATTTTTAGCTCA
79840576 TTTTGCTC
1 TTTTGCTC
79840584 CCAAATGCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.19, G:0.10, T:0.58
Consensus pattern (20 bp):
TTTTGCTCATTTTTAGCTCA
Found at i:79840567 original size:9 final size:10
Alignment explanation
Indices: 79840535--79840583 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
79840525 AATTATCTAG
79840535 TTTTTGCTCA
1 TTTTTGCTCA
*
79840545 TTTTTAGCTTA
1 TTTTT-GCTCA
79840556 -TTTTGCTCA
1 TTTTTGCTCA
79840565 TTTTTAGCTCA
1 TTTTT-GCTCA
79840576 -TTTTGCTC
1 TTTTTGCTC
79840584 CCAAATGCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
9 8 0.24
10 17 0.50
11 9 0.26
ACGTcount: A:0.12, C:0.18, G:0.10, T:0.59
Consensus pattern (10 bp):
TTTTTGCTCA
Found at i:79845528 original size:25 final size:25
Alignment explanation
Indices: 79845458--79845529 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
79845448 TGGCTCGAAA
* * **
79845458 GAGCTTCCCGATATACAGCTCGTAT
1 GAGCTTCCCGTTATATAGCTCACAT
79845483 GAGCTTCCCGTTACT-TAGCTCACAT
1 GAGCTTCCCGTTA-TATAGCTCACAT
*
79845508 GAGCTTCCCGTTATATGGCTCA
1 GAGCTTCCCGTTATATAGCTCA
79845530 GAAGAGTTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 1 0.03
25 38 0.95
26 1 0.03
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (25 bp):
GAGCTTCCCGTTATATAGCTCACAT
Found at i:79849248 original size:26 final size:26
Alignment explanation
Indices: 79849219--79849326 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
79849209 TGGTACAAAT
79849219 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
79849245 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79849271 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
79849297 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79849323 TGAT
1 TGAT
79849327 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:79855611 original size:21 final size:20
Alignment explanation
Indices: 79855587--79855632 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
79855577 AAAAATAATC
79855587 ATAAA-CTATTTTTTGAAAATT
1 ATAAAGCTA-TTTTT-AAAATT
79855608 ATAAAAGCTATTTTTAAAATT
1 AT-AAAGCTATTTTTAAAATT
79855629 ATAA
1 ATAA
79855633 GCATGCGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
20 2 0.09
21 10 0.43
22 8 0.35
23 3 0.13
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (20 bp):
ATAAAGCTATTTTTAAAATT
Found at i:79855760 original size:21 final size:20
Alignment explanation
Indices: 79855727--79855768 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
79855717 CTCATACTTG
79855727 TAATTTTAAAAATATT-TTA
1 TAATTTTAAAAATATTATTA
79855746 TAATTTTAAAAAAATATTATTA
1 TAATTTT--AAAAATATTATTA
79855768 T
1 T
79855769 GAATATCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
21 9 0.45
22 4 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTTTAAAAATATTATTA
Found at i:79855765 original size:19 final size:19
Alignment explanation
Indices: 79855727--79855765 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
79855717 CTCATACTTG
* *
79855727 TAATTTTAAAAATATTTTA
1 TAATTTTAAAAAAATATTA
79855746 TAATTTTAAAAAAATATTA
1 TAATTTTAAAAAAATATTA
79855765 T
1 T
79855766 TATGAATATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATTTTAAAAAAATATTA
Found at i:79857177 original size:16 final size:16
Alignment explanation
Indices: 79857140--79857179 Score: 50
Period size: 14 Copynumber: 2.6 Consensus size: 16
79857130 TAATATTTAG
79857140 ATATT-TTGATTATTA
1 ATATTCTTGATTATTA
79857155 A-ATTCTTG-TTATTAA
1 ATATTCTTGATTATT-A
79857170 ATATTCTTGA
1 ATATTCTTGA
79857180 AATTTTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
14 8 0.38
15 6 0.29
16 7 0.33
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (16 bp):
ATATTCTTGATTATTA
Found at i:79861070 original size:3 final size:3
Alignment explanation
Indices: 79861062--79861128 Score: 84
Period size: 3 Copynumber: 22.7 Consensus size: 3
79861052 ATCTTTAACT
** *
79861062 TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA -AA CCA TAC TAA TAA TTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
79861109 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
79861129 TCTTAGATTT
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
2 4 0.07
3 49 0.88
4 3 0.05
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:79871988 original size:12 final size:12
Alignment explanation
Indices: 79871971--79871996 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
79871961 GTGCCACTGA
79871971 AAACAAATAAAT
1 AAACAAATAAAT
79871983 AAACAAATAAAT
1 AAACAAATAAAT
79871995 AA
1 AA
79871997 GATCATAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (12 bp):
AAACAAATAAAT
Found at i:79873336 original size:76 final size:77
Alignment explanation
Indices: 79873243--79873394 Score: 288
Period size: 76 Copynumber: 2.0 Consensus size: 77
79873233 CGGCAAAGAC
*
79873243 CTTCGGATAAACGACATCTTTGAACAGCAGAAGAAATTAACTGACAATACAAAAAACGAAAGGAA
1 CTTCGGACAAACGACATCTTTGAACAGCAGAAGAAATTAACTGACAATACAAAAAACGAAAGGAA
79873308 ATTA-AAAAAAT
66 ATTATAAAAAAT
79873319 CTTCGGACAAACGACATCTTTGAACAGCAGAAGAAATTAACTGACAATACAAAAAACGAAAGGAA
1 CTTCGGACAAACGACATCTTTGAACAGCAGAAGAAATTAACTGACAATACAAAAAACGAAAGGAA
79873384 ATTATAAAAAA
66 ATTATAAAAAA
79873395 AAAGGGAGAT
Statistics
Matches: 74, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
76 68 0.92
77 6 0.08
ACGTcount: A:0.53, C:0.15, G:0.14, T:0.18
Consensus pattern (77 bp):
CTTCGGACAAACGACATCTTTGAACAGCAGAAGAAATTAACTGACAATACAAAAAACGAAAGGAA
ATTATAAAAAAT
Found at i:79873764 original size:14 final size:15
Alignment explanation
Indices: 79873739--79873767 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
79873729 AGTCTAACTG
79873739 TTATTATTGTTAAAT
1 TTATTATTGTTAAAT
79873754 TTATT-TTGTTAAAT
1 TTATTATTGTTAAAT
79873768 CAAAATTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (15 bp):
TTATTATTGTTAAAT
Found at i:79879411 original size:131 final size:129
Alignment explanation
Indices: 79879219--79879610 Score: 482
Period size: 131 Copynumber: 3.0 Consensus size: 129
79879209 GAATTTGGAG
* * * * * *
79879219 AACATGAGTGAAATTCTAAATGAATATTTGATTATTTGGAACAAACAGGAGATCGCAACCCAGCA
1 AACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAA-AGGAAATCGCAACCCAGCA
*
79879284 CAATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTAA
65 CGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTAA
* * *
79879349 AGACATGAATGAAATTCCAAAGGAATGTTCGATTATTTTGAACAAATAGGAAATTGCAACCCAAC
1 A-ACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAA-AGGAAATCGCAACCCAGC
* ** *
79879414 ACGATAGGGCACGATTCCCTGAATTTTCAAACATCGAACATTACCTTCATTTTGAAGAATTTTTA
64 ACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTA
79879479 A
129 A
* * * * *
79879480 AAGCAT-AAGTGAAATCCCAAAGGAATATTCGATTGTTTTGAATAAACGAGAAATCGTAACCCAG
1 AA-CATGAA-TGAAATTCCAAAGGAATATTCGATTATTTTGAACAAAAG-GAAATCGCAACCCAG
* * * ** * *
79879544 CACGATAGGACACGATT-CCCGAATTGCCAAATACCGAGTATTGCCTTCGTTTTAAAGAATTTTT
63 CACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTT
79879608 AA
128 AA
79879610 A
1 A
79879611 TGAATAGTTA
Statistics
Matches: 224, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
130 45 0.20
131 179 0.80
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.28
Consensus pattern (129 bp):
AACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAAAGGAAATCGCAACCCAGCAC
GATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTAA
Found at i:79887572 original size:12 final size:13
Alignment explanation
Indices: 79887555--79887591 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
79887545 GAACCGGACA
79887555 CGAACCGAA-CTC
1 CGAACCGAAGCTC
79887567 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
79887579 CGAACCGTAGCTC
1 CGAACCGAAGCTC
79887592 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:79895567 original size:31 final size:31
Alignment explanation
Indices: 79895532--79895590 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
79895522 ATAGATATTA
*
79895532 TCGTTACATAATTTTATTATTTTAGTCAGTC
1 TCGTTACATAATTTTATCATTTTAGTCAGTC
*
79895563 TCGTTACATACTTTTATCATTTTAGTCA
1 TCGTTACATAATTTTATCATTTTAGTCA
79895591 TTGCACATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.25, C:0.15, G:0.08, T:0.51
Consensus pattern (31 bp):
TCGTTACATAATTTTATCATTTTAGTCAGTC
Found at i:79896026 original size:133 final size:137
Alignment explanation
Indices: 79895846--79896101 Score: 319
Period size: 133 Copynumber: 1.9 Consensus size: 137
79895836 AGGGTTTTTT
* *
79895846 AAGAAATTACTTAAGTTTTTATAGGAAAACTTGAGTTTTACACGAAAAATCA-ATTTAT-TTATT
1 AAGAAATTACTGAAGTTTTTATAGGAAAACTTGAGTTTTACAAGAAAAATCATATTTATCTTATT
* * * *
79895909 -TTTCCATT-TCCTTTTTCTTTTTTAAAATTAGTTTTA-TTTTTCAGTAAGAGGGAAACACTTGG
66 ATTTCCATTATCATTTTTATTTTTTAAAATTAATTTTAGTTTTTCAATAA-AGGGAAACACTTGG
79895971 GATTTTAC
130 GATTTTAC
* * *
79895979 AAGAAATTACTGGAGTTTTTATAGGAAAACTTG-GATTATTA-AAGAAAAATCATTTTTATCTTT
1 AAGAAATTACTGAAGTTTTTATAGGAAAACTTGAG-TT-TTACAAGAAAAATCATATTTATCTTA
** *
79896042 TTAATTTCTTTTATTATTTTTATTTTTTAAAATTAATTTTAGTTTTTCAATAAAGGGAAA
64 TT-ATTTCCATTATCATTTTTATTTTTTAAAATTAATTTTAGTTTTTCAATAAAGGGAAA
79896102 AATTTCGGGT
Statistics
Matches: 103, Mismatches: 12, Indels: 11
0.82 0.10 0.09
Matches are distributed among these distances:
132 1 0.01
133 43 0.42
134 8 0.08
135 4 0.04
137 6 0.06
138 31 0.30
139 10 0.10
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.46
Consensus pattern (137 bp):
AAGAAATTACTGAAGTTTTTATAGGAAAACTTGAGTTTTACAAGAAAAATCATATTTATCTTATT
ATTTCCATTATCATTTTTATTTTTTAAAATTAATTTTAGTTTTTCAATAAAGGGAAACACTTGGG
ATTTTAC
Found at i:79903549 original size:30 final size:30
Alignment explanation
Indices: 79903503--79903624 Score: 190
Period size: 30 Copynumber: 4.0 Consensus size: 30
79903493 TTTTATTATG
* *
79903503 CCAATATCTCGATACCCATATATTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
79903534 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
79903564 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
79903594 TCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
79903624 C
1 C
79903625 TATAAATATG
Statistics
Matches: 85, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 78 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:79903588 original size:15 final size:15
Alignment explanation
Indices: 79903513--79903620 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
79903503 CCAATATCTC
79903513 GATACCCATATATTT
1 GATACCCATATATTT
**
79903528 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
79903543 GATACCCATATCTTT
1 GATACCCATATATTT
**
79903558 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
79903573 GATACCCATATCTTT
1 GATACCCATATATTT
***
79903588 GACTTTTCAT-TATTT
1 GA-TACCCATATATTT
*
79903603 GATACCCATATCTTT
1 GATACCCATATATTT
79903618 GAT
1 GAT
79903621 TTTCTATAAA
Statistics
Matches: 68, Mismatches: 19, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
14 12 0.18
15 44 0.65
16 12 0.18
ACGTcount: A:0.27, C:0.21, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:79906909 original size:113 final size:113
Alignment explanation
Indices: 79906711--79906938 Score: 384
Period size: 113 Copynumber: 2.0 Consensus size: 113
79906701 GAAAGAATAG
*
79906711 TAATTTAGTAGATATGGTTAACTCGATGTTGTTAAATGCTAAACTTCTATATAATCTATGAGGTG
1 TAATTTAGTAGATATGGTTAACTCGATGTTGTTAAATGCTAAACTTCCATATAATCTATGAGGTG
* *
79906776 AAGCATGGGGTGAAGCATTATTGACTGCGTGTTATATTCATAACATAA
66 AAGCATGGGGTGAAGCATTATTGACTGCATGTTATATTCATAACAGAA
* * * *
79906824 TAATTTAGTAGATATGGTTAACTCGATGTTGTTAAATGCTTAAGTTCCATATACTCTATGGGGTG
1 TAATTTAGTAGATATGGTTAACTCGATGTTGTTAAATGCTAAACTTCCATATAATCTATGAGGTG
*
79906889 AAGCATGGGTTGAAGCATTATTGACTGCATGTTATATTCATAACAGAA
66 AAGCATGGGGTGAAGCATTATTGACTGCATGTTATATTCATAACAGAA
79906937 TA
1 TA
79906939 CCATTGAGAA
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
113 107 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (113 bp):
TAATTTAGTAGATATGGTTAACTCGATGTTGTTAAATGCTAAACTTCCATATAATCTATGAGGTG
AAGCATGGGGTGAAGCATTATTGACTGCATGTTATATTCATAACAGAA
Found at i:79912446 original size:2 final size:2
Alignment explanation
Indices: 79912439--79912466 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
79912429 ATTTACATGT
79912439 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
79912467 TTATATAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:79942936 original size:21 final size:21
Alignment explanation
Indices: 79942900--79942979 Score: 74
Period size: 21 Copynumber: 3.8 Consensus size: 21
79942890 ATAATAAAAT
*
79942900 AAAATAAAAGATATAAATCCAG
1 AAAAT-AAAGAAATAAATCCAG
* *
79942922 AAAATAAAGAAATAAAT-AAA
1 AAAATAAAGAAATAAATCCAG
* * *
79942942 AAGAAAAAACATATAAATCCAG
1 AA-AATAAAGAAATAAATCCAG
79942964 AAAATAAA-AAATAAAT
1 AAAATAAAGAAATAAAT
79942980 AAATAAATAA
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
20 10 0.22
21 28 0.61
22 8 0.17
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.16
Consensus pattern (21 bp):
AAAATAAAGAAATAAATCCAG
Found at i:79942941 original size:34 final size:34
Alignment explanation
Indices: 79942890--79942982 Score: 89
Period size: 42 Copynumber: 2.5 Consensus size: 34
79942880 AAAAAAATGC
79942890 ATAATAAAATAAAATAAAAG-ATATAAATCCAGAAA
1 ATAA-AAAAT-AAATAAAAGAATATAAATCCAGAAA
79942925 ATAAAGAAATAAATAAAAAGAAAAAACATATAAATCCAGAAA
1 ATAAA-AAATAAAT-AAAAG-----A-ATATAAATCCAGAAA
79942967 ATAAAAAATAAATAAA
1 ATAAAAAATAAATAAA
79942983 TAAATAAAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
34 5 0.10
35 13 0.27
40 3 0.06
41 8 0.16
42 20 0.41
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.17
Consensus pattern (34 bp):
ATAAAAAATAAATAAAAGAATATAAATCCAGAAA
Found at i:79942991 original size:24 final size:24
Alignment explanation
Indices: 79942922--79942997 Score: 80
Period size: 24 Copynumber: 3.1 Consensus size: 24
79942912 ATAAATCCAG
* *
79942922 AAAATAAAGAAATAAATAAAAAGAA
1 AAAATAAATAAATAAAT-AAAATAA
* * ** *
79942947 AAAACATATAAATCCAGAAAATAA
1 AAAATAAATAAATAAATAAAATAA
79942971 AAAATAAATAAATAAATAAAATAA
1 AAAATAAATAAATAAATAAAATAA
79942995 AAA
1 AAA
79942998 TGGGGCTTGG
Statistics
Matches: 39, Mismatches: 12, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
24 28 0.72
25 11 0.28
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (24 bp):
AAAATAAATAAATAAATAAAATAA
Found at i:79943491 original size:19 final size:20
Alignment explanation
Indices: 79943447--79943492 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
79943437 TTCAAAAAAA
* *
79943447 TTTCAAAATTTTTTAATTTTT
1 TTTCAAAATTTCTT-ATTTGT
79943468 TTTCAAAATTTCTT-TTTGT
1 TTTCAAAATTTCTTATTTGT
79943487 TTTCAA
1 TTTCAA
79943493 TTGTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 10 0.43
21 13 0.57
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTCAAAATTTCTTATTTGT
Found at i:79945776 original size:19 final size:18
Alignment explanation
Indices: 79945724--79945776 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
79945714 TCAATACTTG
*
79945724 ATTTCATTTCACAATTCAT
1 ATTTCATTTCTC-ATTCAT
*
79945743 ATCTCATTTCATCATTCCAT
1 ATTTCATTTC-TCATT-CAT
79945763 ATTTCATTTCTCAT
1 ATTTCATTTCTCAT
79945777 CTTCATTTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.26, C:0.25, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTCATTTCTCATTCAT
Found at i:79945783 original size:13 final size:13
Alignment explanation
Indices: 79945765--79945792 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79945755 CATTCCATAT
79945765 TTCATTTCTCATC
1 TTCATTTCTCATC
79945778 TTCATTTCTCATC
1 TTCATTTCTCATC
79945791 TT
1 TT
79945793 TTCCATCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57
Consensus pattern (13 bp):
TTCATTTCTCATC
Found at i:79945789 original size:20 final size:20
Alignment explanation
Indices: 79945727--79945789 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
79945717 ATACTTGATT
* *
79945727 TCATTTCA-CAATTCATATC
1 TCATTTCATCATTTCATTTC
*
79945746 TCATTTCATCATTCCATATT-
1 TCATTTCATCATTTCAT-TTC
79945766 TCATTTC-TCATCTTCATTTC
1 TCATTTCATCAT-TTCATTTC
79945786 TCAT
1 TCAT
79945790 CTTTTCCATC
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
19 14 0.39
20 21 0.58
21 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (20 bp):
TCATTTCATCATTTCATTTC
Found at i:79950247 original size:25 final size:25
Alignment explanation
Indices: 79950219--79950266 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
79950209 ACATATACTC
79950219 CATAGC-CAAATACCATCATAAATCA
1 CATAGCTCAAATACCATCA-AAATCA
* *
79950244 CATAGCTCATATACCTTCAAAAT
1 CATAGCTCAAATACCATCAAAAT
79950267 ATTCTCAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 10 0.50
26 10 0.50
ACGTcount: A:0.44, C:0.27, G:0.04, T:0.25
Consensus pattern (25 bp):
CATAGCTCAAATACCATCAAAATCA
Found at i:79950556 original size:42 final size:43
Alignment explanation
Indices: 79950486--79950604 Score: 118
Period size: 42 Copynumber: 2.8 Consensus size: 43
79950476 CAATGTCAAC
* * * * * *
79950486 GTCCCAGATGTGGTCTTACATGTAATCAAATATCGTTGCCACT
1 GTCCGAGAAGTGGTCTTACACGAAATCAAATATCGATGCCAAT
*
79950529 TTCCGA-ACAG-GGTCTTACACGAAATCAAATA-CGATGCCAAT
1 GTCCGAGA-AGTGGTCTTACACGAAATCAAATATCGATGCCAAT
* * *
79950570 GTCCTAGATGTGGTCTTACACGAAATCACATATCG
1 GTCCGAGAAGTGGTCTTACACGAAATCAAATATCG
79950605 GAATCCTATG
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
41 13 0.21
42 41 0.67
43 7 0.11
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
GTCCGAGAAGTGGTCTTACACGAAATCAAATATCGATGCCAAT
Found at i:79951398 original size:31 final size:31
Alignment explanation
Indices: 79951363--79951429 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
79951353 GTCACCAAAA
*
79951363 TTCTTAGCCAAACCCTAAGAACTTTTTTTCT
1 TTCTTAGCCAAACCCTAAGAACTCTTTTTCT
79951394 TTCTTAGCCAAACCCTAAGAACTCTTTTTCT
1 TTCTTAGCCAAACCCTAAGAACTCTTTTTCT
79951425 TTCTT
1 TTCTT
79951430 TTTCTTTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.43
Consensus pattern (31 bp):
TTCTTAGCCAAACCCTAAGAACTCTTTTTCT
Found at i:79958125 original size:43 final size:41
Alignment explanation
Indices: 79958013--79958169 Score: 143
Period size: 43 Copynumber: 3.7 Consensus size: 41
79958003 CAATGCCAAC
* * * * *
79958013 GTCCCAGACGTGGTCTTCCATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGAAATCAAATA-CGATG-CAAT
* * *
79958056 GTCCCAAACAGGGTCTTACACGAAATCAAATACGATGCTGAT
1 GTCCCAGACATGGTCTTACACGAAATCAAATACGATGC-AAT
* ** *
79958098 GTCCCAGACATGGTCTTACACGTAAATCTCAAGCCGATGCCAAC
1 GTCCCAGACATGGTCTTACACG-AAATC-AAATACGATG-CAAT
*
79958142 GTCCCAGACGTGGTCTTACACGAAATCA
1 GTCCCAGACATGGTCTTACACGAAATCA
79958170 CATATCGAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 26 0.28
43 36 0.39
44 29 0.31
45 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATACGATGCAAT
Done.