Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 239 of 284
Found at i:79975803 original size:46 final size:46
Alignment explanation
Indices: 79975751--79975977 Score: 330
Period size: 46 Copynumber: 5.0 Consensus size: 46
79975741 GCTATCTGAA
*
79975751 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
79975797 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC-ACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
79975842 ATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *** * * *
79975888 GGGAAATAAATAAGACCATGGTTGAAAGGTACCATGGCAGCGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
**
79975934 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
79975978 GGTGAAATGG
Statistics
Matches: 163, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 44 0.27
46 119 0.73
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:79975906 original size:91 final size:92
Alignment explanation
Indices: 79975751--79975977 Score: 339
Period size: 91 Copynumber: 2.5 Consensus size: 92
79975741 GCTATCTGAA
* * ***
79975751 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGACCAT
*
79975816 GGTTGAAAGATACCATGGCA-CATGAT
66 GGTTGAAAGATACCATGGCAGCATGAC
* *
79975842 ATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGACCAT
* *
79975907 GGTTGAAAGGTACCATGGCAGCGTGAC
66 GGTTGAAAGATACCATGGCAGCATGAC
**
79975934 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
79975978 GGTGAAATGG
Statistics
Matches: 122, Mismatches: 13, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
91 77 0.63
92 45 0.37
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (92 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGACCAT
GGTTGAAAGATACCATGGCAGCATGAC
Found at i:79976101 original size:38 final size:38
Alignment explanation
Indices: 79976054--79976133 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
79976044 GATGTGTATT
* * *
79976054 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
79976092 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
79976130 CGGG
1 CGGG
79976134 CCTTCGTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:79976250 original size:43 final size:43
Alignment explanation
Indices: 79976126--79976237 Score: 179
Period size: 43 Copynumber: 2.6 Consensus size: 43
79976116 GCTGGTATTA
*
79976126 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
79976169 TATTCGAGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
79976212 TATTCGGGCCTTCTTACCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
79976238 GTAATGCCGG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.12, C:0.25, G:0.31, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:79989001 original size:42 final size:42
Alignment explanation
Indices: 79988943--79989063 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 42
79988933 TAGGATTACT
* * *
79988943 GAGATTACGTGTAAGACCATATTTGGGATATGGCATCGATAT
1 GAGATTACATGTAAGACCATATTTGGGATATGGCATCGAGAC
* ** * *
79988985 GAGACTT-CATGTAAGACTATAGCTGTGCTATTGGCATCGAGAC
1 GAGA-TTACATGTAAGACCATATTTGGGATA-TGGCATCGAGAC
79989028 GAGATTACATGTAAGACCATATTTGGGATATGGCAT
1 GAGATTACATGTAAGACCATATTTGGGATATGGCAT
79989064 TGGTACGGTA
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
GAGATTACATGTAAGACCATATTTGGGATATGGCATCGAGAC
Found at i:79994738 original size:27 final size:27
Alignment explanation
Indices: 79994705--79994911 Score: 315
Period size: 27 Copynumber: 7.6 Consensus size: 27
79994695 TAAATTGTGC
*
79994705 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
79994732 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
79994760 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
79994787 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
79994815 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
79994842 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
79994870 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
79994897 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79994912 GACTTAATAT
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
27 91 0.54
28 77 0.46
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:79994769 original size:55 final size:55
Alignment explanation
Indices: 79994705--79994911 Score: 360
Period size: 55 Copynumber: 3.8 Consensus size: 55
79994695 TAAATTGTGC
79994705 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
79994760 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
79994815 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
79994870 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
79994912 GACTTAATAT
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 147 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:79999939 original size:24 final size:24
Alignment explanation
Indices: 79999903--79999984 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
79999893 ATAATAGTCA
*
79999903 TTCCATTGCTATCCTTTTCAACCT
1 TTCCATTGTTATCCTTTTCAACCT
**
79999927 TTCCATTGTTAT-CTTTTCTAGTCT
1 TTCCATTGTTATCCTTTTC-AACCT
** * *
79999951 TTTTATTATTATCCTTTTCATCCT
1 TTCCATTGTTATCCTTTTCAACCT
79999975 TTCCATTGTT
1 TTCCATTGTT
79999985 TCAGGGATGC
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
23 6 0.13
24 33 0.73
25 6 0.13
ACGTcount: A:0.15, C:0.24, G:0.05, T:0.56
Consensus pattern (24 bp):
TTCCATTGTTATCCTTTTCAACCT
Found at i:80006410 original size:42 final size:42
Alignment explanation
Indices: 80006306--80006441 Score: 146
Period size: 43 Copynumber: 3.2 Consensus size: 42
80006296 ATGTGATATG
* * *
80006306 GTGTAAGACCATGTTTGGGACATTGGCATTGATCTAAGATTAC
1 GTGTAAGACCATGTTTGGGACATTGGCATCG-TATATGATTAC
* *
80006349 ATGTAAGACCATGTTTGGGACATTGGCATCGTATATGATTTC
1 GTGTAAGACCATGTTTGGGACATTGGCATCGTATATGATTAC
* ** * * *
80006391 GTGTAAGACCCTGGCTGGGACAATGGCATCGATATTTGATAAC
1 GTGTAAGACCATGTTTGGGACATTGGCATCG-TATATGATTAC
*
80006434 ATGTAAGA
1 GTGTAAGA
80006442 TCATATCTGG
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 34 0.44
43 44 0.56
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATGTTTGGGACATTGGCATCGTATATGATTAC
Found at i:80006453 original size:43 final size:42
Alignment explanation
Indices: 80006307--80006466 Score: 133
Period size: 43 Copynumber: 3.8 Consensus size: 42
80006297 TGTGATATGG
* * * * * *
80006307 TGTAAGACCATGTTTGGGACATTGGCATTGATCTAAGATTACA
1 TGTAAGACCATGTCTGGGACAATGGCATCG-TATATGATAACA
* * ** *
80006350 TGTAAGACCATGTTTGGGACATTGGCATCGTATATGATTTCG
1 TGTAAGACCATGTCTGGGACAATGGCATCGTATATGATAACA
* * *
80006392 TGTAAGACCCTGGCTGGGACAATGGCATCGATATTTGATAACA
1 TGTAAGACCATGTCTGGGACAATGGCATCG-TATATGATAACA
* * * *
80006435 TGTAAGATCATATCTGGGA-TATGGCATTGTAT
1 TGTAAGACCATGTCTGGGACAATGGCATCGTAT
80006467 GAGTTTATGA
Statistics
Matches: 97, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
41 3 0.03
42 42 0.43
43 52 0.54
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAATGGCATCGTATATGATAACA
Found at i:80006453 original size:85 final size:84
Alignment explanation
Indices: 80006306--80006466 Score: 187
Period size: 85 Copynumber: 1.9 Consensus size: 84
80006296 ATGTGATATG
** * * * * * *
80006306 GTGTAAGACCATGTTTGGGACATTGGCATTGATCTAAGATTACATGTAAGACCATGTTTGGGACA
1 GTGTAAGACCATGGCTGGGACAATGGCATCGATATAAGATAACATGTAAGACCATATCTGGGACA
80006371 TTGGCATCGTATATGATTTC
66 -TGGCATCGTATATGATTTC
* ** * *
80006391 GTGTAAGACCCTGGCTGGGACAATGGCATCGATATTTGATAACATGTAAGATCATATCTGGGATA
1 GTGTAAGACCATGGCTGGGACAATGGCATCGATATAAGATAACATGTAAGACCATATCTGGGACA
*
80006456 TGGCATTGTAT
66 TGGCATCGTAT
80006467 GAGTTTATGA
Statistics
Matches: 62, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
84 10 0.16
85 52 0.84
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.32
Consensus pattern (84 bp):
GTGTAAGACCATGGCTGGGACAATGGCATCGATATAAGATAACATGTAAGACCATATCTGGGACA
TGGCATCGTATATGATTTC
Found at i:80008017 original size:9 final size:9
Alignment explanation
Indices: 80008003--80008028 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
80007993 ACCTTGCTTT
80008003 ACTTCTCTA
1 ACTTCTCTA
80008012 ACTTCTCTA
1 ACTTCTCTA
80008021 ACTTCTCT
1 ACTTCTCT
80008029 TAGATTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.35, G:0.00, T:0.46
Consensus pattern (9 bp):
ACTTCTCTA
Found at i:80009150 original size:20 final size:20
Alignment explanation
Indices: 80009127--80009164 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80009117 AGATTACATA
80009127 TATTAT-ATTATATAATTGAT
1 TATTATAATTAT-TAATTGAT
80009147 TATTATAATTATTAATTG
1 TATTATAATTATTAATTG
80009165 TGATGGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TATTATAATTATTAATTGAT
Found at i:80009199 original size:12 final size:12
Alignment explanation
Indices: 80009175--80009199 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80009165 TGATGGTTTT
80009175 ATATTATTATTA
1 ATATTATTATTA
80009187 ATATTATTATTA
1 ATATTATTATTA
80009199 A
1 A
80009200 ATAAATTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATATTATTATTA
Found at i:80009429 original size:16 final size:17
Alignment explanation
Indices: 80009408--80009441 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
80009398 TGTGCACTTG
80009408 TTATAAAATAATT-TAT
1 TTATAAAATAATTATAT
80009424 TTATAAAATAATTATAT
1 TTATAAAATAATTATAT
80009441 T
1 T
80009442 AAATTATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTATAAAATAATTATAT
Found at i:80010444 original size:21 final size:21
Alignment explanation
Indices: 80010418--80010485 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
80010408 TTGTTTTAAA
80010418 TACTGAATTGAATTGTGAAGT
1 TACTGAATTGAATTGTGAAGT
* *
80010439 TACTGAA-T--ATTGTTATGT
1 TACTGAATTGAATTGTGAAGT
* * *
80010457 GTACTGCATTGAACTGTGAAAT
1 -TACTGAATTGAATTGTGAAGT
80010479 TACTGAA
1 TACTGAA
80010486 GTAATGAATT
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
18 8 0.23
19 6 0.17
20 2 0.06
21 13 0.37
22 6 0.17
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (21 bp):
TACTGAATTGAATTGTGAAGT
Found at i:80010452 original size:40 final size:39
Alignment explanation
Indices: 80010378--80010485 Score: 110
Period size: 40 Copynumber: 2.7 Consensus size: 39
80010368 ATTGAGACTG
* * *
80010378 ATACTGAACTGAATTATGGAA-TACTGAATATTGTTTTAA
1 ATACTGAATTGAATTGT-GAATTACTGAATATTGTTATAA
**
80010417 ATACTGAATTGAATTGTGAAGTTACTGAATATTGTTATGT
1 ATACTGAATTGAATTGTGAA-TTACTGAATATTGTTATAA
* * *
80010457 GTACTGCATTGAACTGTGAAATTACTGAA
1 ATACTGAATTGAATTGTG-AATTACTGAA
80010486 GTAATGAATT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
38 3 0.05
39 15 0.26
40 38 0.66
41 2 0.03
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (39 bp):
ATACTGAATTGAATTGTGAATTACTGAATATTGTTATAA
Found at i:80010744 original size:45 final size:45
Alignment explanation
Indices: 80010691--80010801 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 45
80010681 CGACTACTGT
* *
80010691 TACTGTTACTGTTATTGTTATC-CATT-TGACACTTTGTGTGTCGAA
1 TACTGTTACTGTTATTGTTA-CAGATTCAG-CACTTTGTGTGTCGAA
* * *
80010736 TACTGTTACCGTTATAGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTATTGTTACAGATTCAGCACTTTGTGTGTCGAA
* *
80010781 TACTATTACTGTTACTGTTAC
1 TACTGTTACTGTTATTGTTAC
80010802 TGCTACCGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
44 1 0.02
45 53 0.96
46 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.17, T:0.44
Consensus pattern (45 bp):
TACTGTTACTGTTATTGTTACAGATTCAGCACTTTGTGTGTCGAA
Found at i:80013308 original size:24 final size:24
Alignment explanation
Indices: 80013281--80013328 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
80013271 CAGCCATAGA
80013281 AGGTTTTTGAGGCTTCAAAAATTT
1 AGGTTTTTGAGGCTTCAAAAATTT
80013305 AGGTTTTTGAGGCTTCAAAAATTT
1 AGGTTTTTGAGGCTTCAAAAATTT
80013329 CAGTAACATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (24 bp):
AGGTTTTTGAGGCTTCAAAAATTT
Found at i:80015550 original size:27 final size:27
Alignment explanation
Indices: 80015520--80015697 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
80015510 ATATTGAGCC
* * * *
80015520 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
80015547 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
80015574 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
80015602 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
80015629 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
80015656 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
80015683 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80015698 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:80015659 original size:82 final size:81
Alignment explanation
Indices: 80015541--80015696 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
80015531 TGCTATATAA
* *
80015541 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
80015606 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
80015623 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
80015687 CACTTAGTGC
65 CACTTAGTGC
80015697 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:80017552 original size:47 final size:44
Alignment explanation
Indices: 80017478--80017649 Score: 157
Period size: 44 Copynumber: 3.7 Consensus size: 44
80017468 GTTGCCACAT
80017478 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGAT-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CT--A-AGAGATGAGCC
* * * * *
80017525 AGTGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGAGCC
* * * *
80017569 AGTGTAAGACATGTCTGGGACATGCATCAGCAAACATATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-TA-AGAGAT--GAGCC
*
80017617 AGTATAAGACCATGTCTGGGACATAGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
80017650 AATTTATCCC
Statistics
Matches: 102, Mismatches: 16, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
43 5 0.05
44 31 0.30
45 1 0.01
46 5 0.05
47 28 0.27
48 11 0.11
49 14 0.14
50 7 0.07
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGAGCC
Found at i:80025979 original size:337 final size:337
Alignment explanation
Indices: 80025364--80026037 Score: 1348
Period size: 337 Copynumber: 2.0 Consensus size: 337
80025354 GTCATTTAGT
80025364 ATTTAAAAGAATTAAAAAGGGAAAGTAAAACCAAAATTGGTCCATCTTCTTCATGGAGGCAAAAT
1 ATTTAAAAGAATTAAAAAGGGAAAGTAAAACCAAAATTGGTCCATCTTCTTCATGGAGGCAAAAT
80025429 ATAGCATGGGGGAAGCCATGATTAGGGTTTCCAAGCTTTCCAAGCTTAATAGTAACTTCGTTCTA
66 ATAGCATGGGGGAAGCCATGATTAGGGTTTCCAAGCTTTCCAAGCTTAATAGTAACTTCGTTCTA
80025494 GCCTCGGTTTAATGTTCTTTACATTTTTGGAGTCCCGGTAACTTAATTTAGCTTATTCTAGCAAT
131 GCCTCGGTTTAATGTTCTTTACATTTTTGGAGTCCCGGTAACTTAATTTAGCTTATTCTAGCAAT
80025559 AATTCATGCTAAGGTTCATATTTGGAAAAATACCCATGGGTTAAATGTCTTTATTTTGATGTTTT
196 AATTCATGCTAAGGTTCATATTTGGAAAAATACCCATGGGTTAAATGTCTTTATTTTGATGTTTT
80025624 ATGGTAGAATATGAAGCTTGAAATTATGTTAAACAACTTTTGCTAAGTGATTTTAAGTGAAAACG
261 ATGGTAGAATATGAAGCTTGAAATTATGTTAAACAACTTTTGCTAAGTGATTTTAAGTGAAAACG
80025689 AGTAAAACGACA
326 AGTAAAACGACA
80025701 ATTTAAAAGAATTAAAAAGGGAAAGTAAAACCAAAATTGGTCCATCTTCTTCATGGAGGCAAAAT
1 ATTTAAAAGAATTAAAAAGGGAAAGTAAAACCAAAATTGGTCCATCTTCTTCATGGAGGCAAAAT
80025766 ATAGCATGGGGGAAGCCATGATTAGGGTTTCCAAGCTTTCCAAGCTTAATAGTAACTTCGTTCTA
66 ATAGCATGGGGGAAGCCATGATTAGGGTTTCCAAGCTTTCCAAGCTTAATAGTAACTTCGTTCTA
80025831 GCCTCGGTTTAATGTTCTTTACATTTTTGGAGTCCCGGTAACTTAATTTAGCTTATTCTAGCAAT
131 GCCTCGGTTTAATGTTCTTTACATTTTTGGAGTCCCGGTAACTTAATTTAGCTTATTCTAGCAAT
80025896 AATTCATGCTAAGGTTCATATTTGGAAAAATACCCATGGGTTAAATGTCTTTATTTTGATGTTTT
196 AATTCATGCTAAGGTTCATATTTGGAAAAATACCCATGGGTTAAATGTCTTTATTTTGATGTTTT
80025961 ATGGTAGAATATGAAGCTTGAAATTATGTTAAACAACTTTTGCTAAGTGATTTTAAGTGAAAACG
261 ATGGTAGAATATGAAGCTTGAAATTATGTTAAACAACTTTTGCTAAGTGATTTTAAGTGAAAACG
80026026 AGTAAAACGACA
326 AGTAAAACGACA
80026038 TAATTGGTAA
Statistics
Matches: 337, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
337 337 1.00
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.34
Consensus pattern (337 bp):
ATTTAAAAGAATTAAAAAGGGAAAGTAAAACCAAAATTGGTCCATCTTCTTCATGGAGGCAAAAT
ATAGCATGGGGGAAGCCATGATTAGGGTTTCCAAGCTTTCCAAGCTTAATAGTAACTTCGTTCTA
GCCTCGGTTTAATGTTCTTTACATTTTTGGAGTCCCGGTAACTTAATTTAGCTTATTCTAGCAAT
AATTCATGCTAAGGTTCATATTTGGAAAAATACCCATGGGTTAAATGTCTTTATTTTGATGTTTT
ATGGTAGAATATGAAGCTTGAAATTATGTTAAACAACTTTTGCTAAGTGATTTTAAGTGAAAACG
AGTAAAACGACA
Found at i:80027037 original size:47 final size:46
Alignment explanation
Indices: 80026979--80027100 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 46
80026969 GCATTGGCAC
80026979 TAAGACAAGGATACAATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATAC-ATGTAAGACCATGTTTGGAACATGGCATTTGG
80027026 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATA-CATGTAAGACCATGTTTGGAACATGGCATTTGG
*
80027073 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATA-CATGTAAGACCATG
80027101 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
47 71 0.99
48 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (46 bp):
TAAGACAAGGATACATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:80027143 original size:54 final size:54
Alignment explanation
Indices: 80027079--80027262 Score: 210
Period size: 54 Copynumber: 3.4 Consensus size: 54
80027069 TTGGTAAGAT
* *
80027079 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGA
* * * * * ** *
80027133 AAGGAAATCATGTAAGACCATGTCAAGACATGGTATTGATTGGTTATTATAAGGTA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGG-A
* * *
80027189 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGA
*
80027241 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
80027263 TCAATACATG
Statistics
Matches: 107, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
52 5 0.05
53 21 0.20
54 39 0.36
55 38 0.36
56 4 0.04
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGA
Found at i:80027300 original size:16 final size:16
Alignment explanation
Indices: 80027279--80027310 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
80027269 CATGGCAATG
80027279 GTAAGTAATTGAGATT
1 GTAAGTAATTGAGATT
80027295 GTAAGTAATTGAGATT
1 GTAAGTAATTGAGATT
80027311 ATGAAGTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (16 bp):
GTAAGTAATTGAGATT
Found at i:80032819 original size:30 final size:29
Alignment explanation
Indices: 80032763--80032819 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
80032753 CCGAGCCTAG
*
80032763 GGGCAAAATTGTAATTCTGTAAAGTTTAA
1 GGGCAAAATTGTAATTCTGAAAAGTTTAA
*
80032792 GGGCAAAATTGTAATTTTGAAAAAGTTT
1 GGGCAAAATTGTAATTCTG-AAAAGTTT
80032820 GAGTTAGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.39, C:0.05, G:0.21, T:0.35
Consensus pattern (29 bp):
GGGCAAAATTGTAATTCTGAAAAGTTTAA
Found at i:80033552 original size:47 final size:45
Alignment explanation
Indices: 80033431--80033665 Score: 184
Period size: 47 Copynumber: 5.1 Consensus size: 45
80033421 GGAATTGACG
* *
80033431 GTTAAGGATACCATATAAGACCATGTCAAGACATGGCATTGGTAA
1 GTTAAGGATACCATGTAAGACCATGTCAAGACATGGCATGGGTAA
* * * *
80033476 GGTAAGGATCCCGTGTAAGACCATGTCAAGACATGGCATGGGTATT
1 GTTAAGGATACCATGTAAGACCATGTCAAGACATGGCATGGGTA-A
** ** *
80033522 GATTAAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCACTAA
1 G-TTAAGGA-TACCATGTAAGACCATGTCAAGACATGGCA-TGG--GTAA
** *** *
80033571 GACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAA
1 GTTAAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TGGGTAA
* * * * * *
80033618 GATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAA
1 GTTAAGGATACCATGTAAGACCATGTCAAGACATGGCATGGGTAA
80033663 GTT
1 GTT
80033666 CTATAAGGCA
Statistics
Matches: 148, Mismatches: 34, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
45 47 0.32
46 8 0.05
47 57 0.39
48 24 0.16
49 10 0.07
50 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (45 bp):
GTTAAGGATACCATGTAAGACCATGTCAAGACATGGCATGGGTAA
Found at i:80033750 original size:55 final size:54
Alignment explanation
Indices: 80033621--80033817 Score: 229
Period size: 54 Copynumber: 3.6 Consensus size: 54
80033611 TTGGTAAGAT
* * **
80033621 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATTGGTTCTATAAGGC
* * * *
80033675 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATTGGTTACTATAAGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATTGGTT-CTATAAGG-C
* * *
80033731 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTG-GTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATTG-GTTCTATAAGGC
* *
80033783 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
80033818 ATGCTAAGTT
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 43 0.35
55 39 0.32
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATTGGTTCTATAAGGC
Found at i:80038104 original size:32 final size:32
Alignment explanation
Indices: 80038068--80038129 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
80038058 ATTAAAATTA
*
80038068 AAATGGCTAAATTAATAGAAATAAAGTTTTTT
1 AAATGGCTAAATTAATAAAAATAAAGTTTTTT
80038100 AAATGGCTAAATTAATAAAAATAAAGTTTT
1 AAATGGCTAAATTAATAAAAATAAAGTTTT
80038130 CCTAATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.35
Consensus pattern (32 bp):
AAATGGCTAAATTAATAAAAATAAAGTTTTTT
Found at i:80051584 original size:47 final size:45
Alignment explanation
Indices: 80051514--80051739 Score: 186
Period size: 46 Copynumber: 4.8 Consensus size: 45
80051504 GTAAGGTATA
* *
80051514 GATGCTATGTCCCAAACATGGTCTTACACTGGCTCAT-ATCTCAAGTC
1 GATGC-ATGTCCCAGACA-GGTCTTACACTGGCT-ATCATCTCAAGCC
* * **
80051561 GATGCAATGTCCCAGACAGGGTCTTACACTGACTATCATTTTGTAGCC
1 GATGC-ATGTCCCAGACA-GGTCTTACACTGGCTATCA-TCTCAAGCC
* * * * *
80051609 GATGCATGTCCAAGACATGTTTTACACTGGCT-TACGTCTCGAGGCC
1 GATGCATGTCCCAGACAGGTCTTACACTGGCTAT-CATCTC-AAGCC
* * * * *
80051655 GGTGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTCAATGTC
1 GATGCATGTCCCAGACAGGTCTTACACTGGCTATCATCTCAA-GCC
*
80051701 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCAT
1 GATG-CATGTCCCAGACA-GGTCTTACACTGGCTATCAT
80051740 AATCTGGTCG
Statistics
Matches: 143, Mismatches: 28, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
45 4 0.03
46 56 0.39
47 56 0.39
48 27 0.19
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACAGGTCTTACACTGGCTATCATCTCAAGCC
Found at i:80051757 original size:47 final size:45
Alignment explanation
Indices: 80051514--80051773 Score: 175
Period size: 47 Copynumber: 5.6 Consensus size: 45
80051504 GTAAGGTATA
*
80051514 GATGCTATGTCCCAAACATGGTCTTACACTGG--CTCATATCTCAAGTC
1 GATGC-ATGTCCCAGACA-GGTCTTACACTGGCTCTCATATCT--AGTC
* * * * *
80051561 GATGCAATGTCCCAGACAGGGTCTTACACTGACTATCATTTTGTAGCC
1 GATGC-ATGTCCCAGACA-GGTCTTACACTGGCTCTCA-TATCTAGTC
* * * * * * *
80051609 GATGCATGTCCAAGACATGTTTTACACTGGCT-TACGTCTCGAGGCC
1 GATGCATGTCCCAGACAGGTCTTACACTGGCTCT-CATATCTA-GTC
* * * * * *
80051655 GGTGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTCAATGTC
1 GATGCATGTCCCAGACAGGTCTTACACTGGCTCTCATATCTA-GTC
*
80051701 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCATAATCTGGTC
1 GATG-CATGTCCCAGACA-GGTCTTACACTGGCTCTCAT-ATCTAGTC
* * *
80051749 GATGCATGTCCTAAACATGTCTTAC
1 GATGCATGTCCCAGACAGGTCTTAC
80051774 TCTAGCTCAC
Statistics
Matches: 170, Mismatches: 34, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
45 4 0.02
46 62 0.36
47 64 0.38
48 32 0.19
49 5 0.03
50 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAGACAGGTCTTACACTGGCTCTCATATCTAGTC
Found at i:80058050 original size:38 final size:38
Alignment explanation
Indices: 80057965--80058039 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
80057955 GATTGGCCTT
80057965 GCCCATGTGGATCACACGGCTTGGCCTAGAATCCACAA
1 GCCCATGTGGATCACACGGCTTGGCCTAGAATCCACAA
*
80058003 GCCCATGTGGATCACATGGCTTGGCCTAGAATCCACA
1 GCCCATGTGGATCACACGGCTTGGCCTAGAATCCACA
80058040 CGTCTGTGTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (38 bp):
GCCCATGTGGATCACACGGCTTGGCCTAGAATCCACAA
Found at i:80075244 original size:9 final size:9
Alignment explanation
Indices: 80075227--80075281 Score: 83
Period size: 9 Copynumber: 6.1 Consensus size: 9
80075217 TGAGTTTTCG
80075227 AATTCGAAT
1 AATTCGAAT
*
80075236 AACTCGAAT
1 AATTCGAAT
*
80075245 AATTAGAAT
1 AATTCGAAT
80075254 AATTCGAAT
1 AATTCGAAT
*
80075263 ATTTCGAAT
1 AATTCGAAT
80075272 AATTCGAAT
1 AATTCGAAT
80075281 A
1 A
80075282 TCAAACTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (9 bp):
AATTCGAAT
Found at i:80076051 original size:5 final size:5
Alignment explanation
Indices: 80076041--80076066 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
80076031 CTCAAAAATT
80076041 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
80076067 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:80089023 original size:21 final size:21
Alignment explanation
Indices: 80088983--80089023 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80088973 TGCACAGAGT
* *
80088983 TGAAGAGGCTATGTGGGAGCC
1 TGAAGAGGCTATGAGAGAGCC
*
80089004 TGAAGATGCTATGAGAGAGC
1 TGAAGAGGCTATGAGAGAGC
80089024 AATACCTGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.39, T:0.20
Consensus pattern (21 bp):
TGAAGAGGCTATGAGAGAGCC
Found at i:80092085 original size:26 final size:26
Alignment explanation
Indices: 80092054--80092161 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
80092044 TGAAATGCCC
*
80092054 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
80092080 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
80092106 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
80092132 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
80092158 ATCA
1 ATCA
80092162 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:80093431 original size:36 final size:36
Alignment explanation
Indices: 80093384--80093455 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
80093374 CCCGGTCAGA
80093384 AACAATCGAAACTGGGACTCCATGAAGTCGTACAAT
1 AACAATCGAAACTGGGACTCCATGAAGTCGTACAAT
80093420 AACAATCGAAACTGGGACTCCATGAAGTCGTACAAT
1 AACAATCGAAACTGGGACTCCATGAAGTCGTACAAT
80093456 CTCTGCCACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.19
Consensus pattern (36 bp):
AACAATCGAAACTGGGACTCCATGAAGTCGTACAAT
Found at i:80097486 original size:59 final size:59
Alignment explanation
Indices: 80097407--80097524 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
80097397 AGGGGTAACA
*
80097407 CTGTAAATTTTCTACTTTTAAAGGTATTTCAGTAATTTATCTATTTTAGGGTTTTTCAT
1 CTGTAAATTTTCCACTTTTAAAGGTATTTCAGTAATTTATCTATTTTAGGGTTTTTCAT
80097466 CTGTAAATTTTCCACTTTTAAAGGTATTTCAGTAATTTATCTATTTTAGGGTTTTTCAT
1 CTGTAAATTTTCCACTTTTAAAGGTATTTCAGTAATTTATCTATTTTAGGGTTTTTCAT
80097525 GCATATTCCT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.25, C:0.11, G:0.12, T:0.52
Consensus pattern (59 bp):
CTGTAAATTTTCCACTTTTAAAGGTATTTCAGTAATTTATCTATTTTAGGGTTTTTCAT
Found at i:80098341 original size:26 final size:26
Alignment explanation
Indices: 80098310--80098470 Score: 241
Period size: 26 Copynumber: 6.2 Consensus size: 26
80098300 TGAAATGCCC
*
80098310 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
80098336 ATCATGGAACATTTAGCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
80098362 ATCATGGAACATTTACCTAAACTATT
1 ATCATGGAACATTTACCTAACCCATT
80098388 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
80098414 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
80098440 ACCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
80098466 ATCAT
1 ATCAT
80098471 TTTGTACCAT
Statistics
Matches: 119, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 119 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:80101710 original size:16 final size:17
Alignment explanation
Indices: 80101691--80101723 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
80101681 TAAAATCTAA
*
80101691 CCATTTTAACC-TAAAT
1 CCATGTTAACCATAAAT
80101707 CCATGTTAACCATAAAT
1 CCATGTTAACCATAAAT
80101724 TCAAGGGACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.33
Consensus pattern (17 bp):
CCATGTTAACCATAAAT
Found at i:80109169 original size:22 final size:23
Alignment explanation
Indices: 80109113--80109180 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 23
80109103 ATATCGTACC
*
80109113 TTATCAAATCATATTTCATATCA
1 TTATCATATCATATTTCATATCA
* *
80109136 TGTA--GTACCATATTTCATAT-A
1 T-TATCATATCATATTTCATATCA
**
80109157 TTATCATATCATATCCCATATCA
1 TTATCATATCATATTTCATATCA
80109180 T
1 T
80109181 ACCATAACAT
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
20 2 0.06
21 2 0.06
22 25 0.74
23 3 0.09
24 2 0.06
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.43
Consensus pattern (23 bp):
TTATCATATCATATTTCATATCA
Found at i:80113055 original size:18 final size:18
Alignment explanation
Indices: 80113032--80113086 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
80113022 ATTATATTAA
80113032 ATTATTTAAATATCATCT
1 ATTATTTAAATATCATCT
**
80113050 ATTA-TT--ATAT--TAA
1 ATTATTTAAATATCATCT
80113063 ATTATTTAAATATCATCT
1 ATTATTTAAATATCATCT
80113081 ATTATT
1 ATTATT
80113087 ATATTAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
13 5 0.18
14 2 0.07
15 4 0.14
16 4 0.14
17 2 0.07
18 11 0.39
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTATTTAAATATCATCT
Found at i:80113057 original size:31 final size:31
Alignment explanation
Indices: 80113022--80113102 Score: 162
Period size: 31 Copynumber: 2.6 Consensus size: 31
80113012 TTTATGTTTC
80113022 ATTATATTAAATTATTTAAATATCATCTATT
1 ATTATATTAAATTATTTAAATATCATCTATT
80113053 ATTATATTAAATTATTTAAATATCATCTATT
1 ATTATATTAAATTATTTAAATATCATCTATT
80113084 ATTATATTAAATTATTTAA
1 ATTATATTAAATTATTTAA
80113103 CTATTTAATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (31 bp):
ATTATATTAAATTATTTAAATATCATCTATT
Found at i:80137932 original size:53 final size:53
Alignment explanation
Indices: 80137782--80137937 Score: 194
Period size: 52 Copynumber: 3.0 Consensus size: 53
80137772 TGACGGAAAA
80137782 GATGTGATATGT-ATTTCTGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
1 GATGTGATATGTGATTTCTGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
* * * * **
80137834 AATGTGAT-T-CGAGTTCCTGTATAAGACTATAGCTGGGCTATGGCATCGGTGT
1 GATGTGATATGTGA-TTTCTGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
* *
80137886 GATGTGATAATGTGATTTC-GTATAAGACCATATCTGGGATATGGCATCGGTA
1 GATGTGAT-ATGTGATTTCTGTATAAGACCATAGCTGGGCTATGGCATCGGTA
80137938 TGTTATGTGA
Statistics
Matches: 86, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
51 2 0.02
52 49 0.57
53 29 0.34
54 4 0.05
55 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.33
Consensus pattern (53 bp):
GATGTGATATGTGATTTCTGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
Found at i:80144762 original size:28 final size:27
Alignment explanation
Indices: 80144653--80144853 Score: 277
Period size: 27 Copynumber: 7.6 Consensus size: 27
80144643 TAAATTGTGC
*
80144653 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
80144680 AGCACTAAGTGTGC-----GACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
80144702 AGCACTAAATGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
80144729 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
80144757 ATCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
80144784 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
80144812 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
80144839 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80144854 GACTTAATAT
Statistics
Matches: 159, Mismatches: 8, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.13
27 86 0.54
28 52 0.33
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:80144778 original size:55 final size:55
Alignment explanation
Indices: 80144653--80144853 Score: 288
Period size: 55 Copynumber: 3.8 Consensus size: 55
80144643 TAAATTGTGC
80144653 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGC------GACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
80144702 AGCACTAAATGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
80144757 ATCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
80144812 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
80144854 GACTTAATAT
Statistics
Matches: 137, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
49 40 0.29
55 97 0.71
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:80149483 original size:23 final size:23
Alignment explanation
Indices: 80149454--80149507 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
80149444 TTATCTCTTG
80149454 AAAATATACTCATTCAGGATTTA
1 AAAATATACTCATTCAGGATTTA
80149477 AAAATATACTCATTCAGGATTTA
1 AAAATATACTCATTCAGGATTTA
80149500 AAAATATA
1 AAAATATA
80149508 AATTTAAGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.33
Consensus pattern (23 bp):
AAAATATACTCATTCAGGATTTA
Found at i:80177680 original size:30 final size:30
Alignment explanation
Indices: 80177644--80177701 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
80177634 ATGCCCGGGG
* *
80177644 TTTAAAAAA-AAACATTACTTTTAATTATTA
1 TTTAAAAAATAAA-ATTACGTTAAATTATTA
80177674 TTTAAAAAATAAAATTACGTTAAATTAT
1 TTTAAAAAATAAAATTACGTTAAATTAT
80177702 AGAAAATATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (30 bp):
TTTAAAAAATAAAATTACGTTAAATTATTA
Found at i:80178481 original size:20 final size:21
Alignment explanation
Indices: 80178440--80178485 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
80178430 TTTTTAACTT
*
80178440 TTTTTTATATATTCTTTAGAA
1 TTTTTTATAAATTCTTTAGAA
80178461 TTTTTTATAAATAT-TTT-GAA
1 TTTTTTATAAAT-TCTTTAGAA
80178481 TTTTT
1 TTTTT
80178486 AAAAATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 14 0.61
22 1 0.04
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.65
Consensus pattern (21 bp):
TTTTTTATAAATTCTTTAGAA
Found at i:80178503 original size:19 final size:19
Alignment explanation
Indices: 80178460--80178504 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
80178450 ATTCTTTAGA
*
80178460 ATTTTTTATAAATATTTTG
1 ATTTTTTAAAAATATTTTG
*
80178479 AATTTTTAAAAATTATTTT-
1 ATTTTTTAAAAA-TATTTTG
80178498 ATTTTTT
1 ATTTTTT
80178505 TTATAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
ATTTTTTAAAAATATTTTG
Found at i:80178512 original size:20 final size:20
Alignment explanation
Indices: 80178440--80178512 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 20
80178430 TTTTTAACTT
* *
80178440 TTTTTTATATATTCTTTAGAA
1 TTTTTTATA-ATTATTTTGAA
*
80178461 TTTTTTATAAATATTTTGAA
1 TTTTTTATAATTATTTTGAA
* * *
80178481 TTTTTAAAAATTATTTT-ATT
1 TTTTTTATAATTATTTTGA-A
80178501 TTTTTTATAATT
1 TTTTTTATAATT
80178513 TTTGTTTAGA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
19 1 0.02
20 32 0.76
21 9 0.21
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (20 bp):
TTTTTTATAATTATTTTGAA
Found at i:80180843 original size:39 final size:39
Alignment explanation
Indices: 80180751--80180829 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
80180741 ACACGTGTTC
80180751 AATAGTATTAAAATACAAGTTTACTACCACTCTATTCAT
1 AATAGTATTAAAATACAAGTTTACTACCACTCTATTCAT
80180790 AATAGTATTAAAATACAAGTTTACTACCACTCTATTCAT
1 AATAGTATTAAAATACAAGTTTACTACCACTCTATTCAT
80180829 A
1 A
80180830 CTCATTATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.42, C:0.18, G:0.05, T:0.35
Consensus pattern (39 bp):
AATAGTATTAAAATACAAGTTTACTACCACTCTATTCAT
Found at i:80184107 original size:39 final size:39
Alignment explanation
Indices: 80184063--80184299 Score: 447
Period size: 39 Copynumber: 6.1 Consensus size: 39
80184053 ATGCAAGACA
80184063 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
80184102 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
80184141 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
80184180 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
80184219 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
80184258 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
80184297 CTG
1 CTG
80184300 ATAATATAAT
Statistics
Matches: 194, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 194 1.00
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:80192263 original size:17 final size:17
Alignment explanation
Indices: 80192241--80192273 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80192231 TTTCAGGCGT
80192241 ACTCTAACATCGGGTGA
1 ACTCTAACATCGGGTGA
*
80192258 ACTCTAATATCGGGTG
1 ACTCTAACATCGGGTG
80192274 TATACTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (17 bp):
ACTCTAACATCGGGTGA
Found at i:80192605 original size:48 final size:46
Alignment explanation
Indices: 80192551--80192688 Score: 181
Period size: 44 Copynumber: 3.0 Consensus size: 46
80192541 GTCAGTAATT
* *
80192551 ATACATAACATTTAACACATACAGAGTCATATTAACTTATTCTTTTCA
1 ATACATAACATATATCACATACAGAGTCATATTAACTTA-TCTTTT-A
* *
80192599 ATACATAACATATATCACGTATAGAGTCATATTAACTTA-C-TTTA
1 ATACATAACATATATCACATACAGAGTCATATTAACTTATCTTTTA
* *
80192643 ATACATAACATATATCACATACAAATTCATATTAACTTACTCTTTT
1 ATACATAACATATATCACATACAGAGTCATATTAACTTA-TCTTTT
80192689 TAAATAATTC
Statistics
Matches: 79, Mismatches: 8, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
44 36 0.46
45 3 0.04
46 2 0.03
47 3 0.04
48 35 0.44
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.38
Consensus pattern (46 bp):
ATACATAACATATATCACATACAGAGTCATATTAACTTATCTTTTA
Found at i:80193018 original size:49 final size:49
Alignment explanation
Indices: 80192941--80193065 Score: 142
Period size: 49 Copynumber: 2.6 Consensus size: 49
80192931 CATCAACTTG
* * *
80192941 GTTAACAACTAACATGTCCTACCAGTGGCCCAACATACACGCCAATCTA
1 GTTAGCAACTAACATGCCCTACCAGTGGCCCAACATACACGCCAACCTA
* * ** * * *
80192990 GTTAGCAACTAACATGCCCTACCAGTGGCCTATCATATTCTCCTACCTG
1 GTTAGCAACTAACATGCCCTACCAGTGGCCCAACATACACGCCAACCTA
**
80193039 GTTAGCAACTAGTATGCCCTACCAGTG
1 GTTAGCAACTAACATGCCCTACCAGTG
80193066 TTCTAGTACA
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 64 1.00
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (49 bp):
GTTAGCAACTAACATGCCCTACCAGTGGCCCAACATACACGCCAACCTA
Found at i:80210770 original size:48 final size:48
Alignment explanation
Indices: 80210699--80211179 Score: 584
Period size: 48 Copynumber: 10.0 Consensus size: 48
80210689 TGATACTAGG
* *
80210699 GATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATT
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * * *
80210747 GATATGAGAGCTAGTGTAAGACCATGTCAGGGACATGGCATCAGCCTC
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * *
80210795 GATATGTGAGCCAGTGTAAGACCATTTTTGGAACATAGCATCGGCATT
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * *
80210843 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACAAGGCATCGGTATT
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * **
80210891 GATATGTGAGCTAGTGTAAGACCATGCTTGGAACATGGCATTGAAATT
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * *
80210939 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCCTC
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * *
80210987 GATATGTGAGCCAGTGTCAGACCATGTTTGGAACATGGCATCGGTATT
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* ** * *
80211035 GATATGAAAGCTAGTGTAAGACCATGTTTGGGGCATGGCATCGGCCTC
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * **
80211083 GATATGTGAGCTAGAGTAAGACCATGTTTGGAACATGGCATCGGCACC
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* *
80211131 GATATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGGATCAGCAT
1 G--ATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
80211180 CTTGCCCTTT
Statistics
Matches: 359, Mismatches: 72, Indels: 2
0.83 0.17 0.00
Matches are distributed among these distances:
48 318 0.89
50 41 0.11
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (48 bp):
GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
Found at i:80210863 original size:96 final size:96
Alignment explanation
Indices: 80210699--80211170 Score: 692
Period size: 96 Copynumber: 4.9 Consensus size: 96
80210689 TGATACTAGG
*
80210699 GATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGT
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGT
** *
80210764 AAGACCATGTCAGGGACATGGCATCAGCCTC
66 AAGACCATGTTTGGGACATGGCATCGGCCTC
* * *
80210795 GATATGTGAGCCAGTGTAAGACCATTTTTGGAACATAGCATCGGCATTGATATGAGAGCTAGTGT
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGT
* ** *
80210860 AAGACCATGTTTGGGACAAGGCATCGGTATT
66 AAGACCATGTTTGGGACATGGCATCGGCCTC
* * **
80210891 GATATGTGAGCTAGTGTAAGACCATGCTTGGAACATGGCATTGAAATTGATATGAGAGCTAGTGT
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGT
* *
80210956 AAGACCATGTCTGGGACATGGTATCGGCCTC
66 AAGACCATGTTTGGGACATGGCATCGGCCTC
* * * *
80210987 GATATGTGAGCCAGTGTCAGACCATGTTTGGAACATGGCATCGGTATTGATATGAAAGCTAGTGT
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGT
*
80211052 AAGACCATGTTTGGGGCATGGCATCGGCCTC
66 AAGACCATGTTTGGGACATGGCATCGGCCTC
* **
80211083 GATATGTGAGCTAGAGTAAGACCATGTTTGGAACATGGCATCGGCACCGATATATGAGAGCTAGT
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG--ATATGAGAGCTAGT
*
80211148 GTAAGACCATGTTTGGAACATGG
64 GTAAGACCATGTTTGGGACATGG
80211171 GATCAGCATC
Statistics
Matches: 331, Mismatches: 43, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
96 297 0.90
98 34 0.10
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (96 bp):
GATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGT
AAGACCATGTTTGGGACATGGCATCGGCCTC
Found at i:80215817 original size:18 final size:19
Alignment explanation
Indices: 80215788--80215823 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
80215778 TTTAGAATTT
*
80215788 TTTTTAATTTTTATAAATA
1 TTTTTAATTTTTAAAAATA
80215807 TTTTTAA-TTTTAAAAAT
1 TTTTTAATTTTTAAAAAT
80215824 TATATTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTTAATTTTTAAAAATA
Found at i:80215834 original size:19 final size:20
Alignment explanation
Indices: 80215812--80215853 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
80215802 AAATATTTTT
80215812 AATTT-TAAAAATTATATTG
1 AATTTGTAAAAATTATATTG
* *
80215831 AATTTGTGAAAATTATTTTG
1 AATTTGTAAAAATTATATTG
80215851 AAT
1 AAT
80215854 GTTTTTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (20 bp):
AATTTGTAAAAATTATATTG
Found at i:80219189 original size:22 final size:23
Alignment explanation
Indices: 80219157--80219232 Score: 102
Period size: 24 Copynumber: 3.3 Consensus size: 23
80219147 ATGCTATATT
80219157 GAGCTGAAACAGTAAGCT-TTGAC
1 GAGCTGAAACAGTAAGCTCTT-AC
*
80219180 GAGCT-AAACAGTAAGCTCATAC
1 GAGCTGAAACAGTAAGCTCTTAC
*
80219202 AAGCTGAGAACAGTAAGCTCTTAC
1 GAGCTGA-AACAGTAAGCTCTTAC
80219226 GAGCTGA
1 GAGCTGA
80219233 TATATCGGTA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
22 18 0.39
23 7 0.15
24 21 0.46
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTTAC
Found at i:80219218 original size:24 final size:23
Alignment explanation
Indices: 80219157--80219254 Score: 101
Period size: 24 Copynumber: 4.1 Consensus size: 23
80219147 ATGCTATATT
*
80219157 GAGCTGAAACAGTAAGCT-TTGAC
1 GAGCTGAAACAGTAAGCTCAT-AC
80219180 GAGCT-AAACAGTAAGCTCATAC
1 GAGCTGAAACAGTAAGCTCATAC
* *
80219202 AAGCTGAGAACAGTAAGCTCTTAC
1 GAGCTGA-AACAGTAAGCTCATAC
*
80219226 GAGCTGATATATCGGTAAGCTCATAC
1 GAGCTGA-A-A-CAGTAAGCTCATAC
80219252 GAG
1 GAG
80219255 TTATGGTGAG
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
22 18 0.29
23 7 0.11
24 22 0.35
25 1 0.02
26 15 0.24
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.21
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCATAC
Found at i:80221295 original size:34 final size:34
Alignment explanation
Indices: 80221252--80221319 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
80221242 TTTCAATCCG
80221252 TTTAAATAATTAATTCATTAGTTATTTAACAATT
1 TTTAAATAATTAATTCATTAGTTATTTAACAATT
*
80221286 TTTAAATAATTAATTCATTAGTTATTTAAGAATT
1 TTTAAATAATTAATTCATTAGTTATTTAACAATT
80221320 ATATTGCAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (34 bp):
TTTAAATAATTAATTCATTAGTTATTTAACAATT
Found at i:80225714 original size:15 final size:17
Alignment explanation
Indices: 80225689--80225720 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
80225679 GGTTTCAGCA
80225689 CTTTGGGGTTTT-AGTG
1 CTTTGGGGTTTTGAGTG
80225705 CTTT-GGGTTTTGAGTG
1 CTTTGGGGTTTTGAGTG
80225721 ATAGATGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.06, C:0.06, G:0.38, T:0.50
Consensus pattern (17 bp):
CTTTGGGGTTTTGAGTG
Found at i:80225973 original size:22 final size:24
Alignment explanation
Indices: 80225937--80225984 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
80225927 AATTCTATGC
80225937 TAAATTGATAAAGAT-TAA-TATA
1 TAAATTGATAAAGATATAATTATA
80225959 TAAATT-ATAATAGATATAATTATA
1 TAAATTGATAA-AGATATAATTATA
80225983 TA
1 TA
80225985 TTAAAGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 3 0.13
24 6 0.26
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (24 bp):
TAAATTGATAAAGATATAATTATA
Found at i:80227948 original size:22 final size:24
Alignment explanation
Indices: 80227912--80227959 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
80227902 AATTCTATGC
80227912 TAAATTGATAAAGAT-TAA-TATA
1 TAAATTGATAAAGATATAATTATA
80227934 TAAATT-ATAATAGATATAATTATA
1 TAAATTGATAA-AGATATAATTATA
80227958 TA
1 TA
80227960 TTAAAGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 3 0.13
24 6 0.26
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (24 bp):
TAAATTGATAAAGATATAATTATA
Found at i:80244294 original size:23 final size:22
Alignment explanation
Indices: 80244262--80244320 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
80244252 TTTCGAGCTA
**
80244262 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTAACGAGC
* *
80244284 TGAAATAGTAAGCTATAACGAGC
1 TG-AACAGTAAGCTCTAACGAGC
80244307 TGAACAGTAAGCTC
1 TGAACAGTAAGCTC
80244321 ATACAAGCGG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 12 0.40
23 18 0.60
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (22 bp):
TGAACAGTAAGCTCTAACGAGC
Found at i:80244344 original size:24 final size:26
Alignment explanation
Indices: 80244311--80244378 Score: 86
Period size: 24 Copynumber: 2.7 Consensus size: 26
80244301 ACGAGCTGAA
80244311 CAGTAAGCTCATACAAGCGGAGA-AT
1 CAGTAAGCTCATACAAGCGGAGATAT
* * *
80244336 -AGTAAGCTCTTACAAGCTGATATAT
1 CAGTAAGCTCATACAAGCGGAGATAT
*
80244361 CAATAAGCTCATACAAGC
1 CAGTAAGCTCATACAAGC
80244379 TGTGGTGAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 19 0.53
25 2 0.06
26 15 0.42
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.22
Consensus pattern (26 bp):
CAGTAAGCTCATACAAGCGGAGATAT
Found at i:80244788 original size:28 final size:29
Alignment explanation
Indices: 80244727--80244792 Score: 107
Period size: 28 Copynumber: 2.2 Consensus size: 29
80244717 CAATCTATTC
80244727 AATTTAGCCCATAATTCACTTTTTTTTTGCA
1 AATTTA-CCCATAATTCAC-TTTTTTTTGCA
80244758 AATTTACCCATAATTCAC-TTTTTTTGCA
1 AATTTACCCATAATTCACTTTTTTTTGCA
80244786 AATTTAC
1 AATTTAC
80244793 ACATTTGACC
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
28 17 0.49
30 12 0.34
31 6 0.17
ACGTcount: A:0.29, C:0.20, G:0.05, T:0.47
Consensus pattern (29 bp):
AATTTACCCATAATTCACTTTTTTTTGCA
Found at i:80260678 original size:42 final size:42
Alignment explanation
Indices: 80260587--80260730 Score: 132
Period size: 43 Copynumber: 3.4 Consensus size: 42
80260577 CGTCTTAGCC
* * * *
80260587 GTGGTCTTACATGTAATCAAATATCGATGTC-ACTGTCCCAGAT
1 GTGGTCTTACACGAAATCTAATAT-GATGCCAAC-GTCCCAGAT
**
80260630 AAGGTCTTACACGAAATCTAATATGATGCCAACGTCCCAGAT
1 GTGGTCTTACACGAAATCTAATATGATGCCAACGTCCCAGAT
* * *
80260672 GTGGTCTTACAGGTAAATCATAAGT-CGATGCTAACGTCCCAGA-
1 GTGGTCTTACACG-AAATC-TAA-TATGATGCCAACGTCCCAGAT
*
80260715 CTGGTCTTACACGAAA
1 GTGGTCTTACACGAAA
80260731 ACACATTTCG
Statistics
Matches: 84, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
42 27 0.32
43 37 0.44
44 19 0.23
45 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (42 bp):
GTGGTCTTACACGAAATCTAATATGATGCCAACGTCCCAGAT
Found at i:80261273 original size:29 final size:28
Alignment explanation
Indices: 80261231--80261287 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
80261221 TATTTCATTT
*
80261231 ATTTCACATTTTAGTGCCTAAATTT-ACAA
1 ATTTCACAATTTAGT-CC-AAATTTCACAA
80261260 ATTTCACAATTTAGTCCAAATTTCACAA
1 ATTTCACAATTTAGTCCAAATTTCACAA
80261288 TTCAAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 6 0.23
28 6 0.23
29 14 0.54
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.39
Consensus pattern (28 bp):
ATTTCACAATTTAGTCCAAATTTCACAA
Found at i:80262432 original size:46 final size:46
Alignment explanation
Indices: 80262380--80262474 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
80262370 GTGTTTTCAA
80262380 AGATAGATTTGAGATTGAGCTATTATCAGTTGAGAGTAAAAGATTC
1 AGATAGATTTGAGATTGAGCTATTATCAGTTGAGAGTAAAAGATTC
80262426 AGATAGATTTGAGATTGAGCTATTATCAGTTGAGAGTAAAAGATTC
1 AGATAGATTTGAGATTGAGCTATTATCAGTTGAGAGTAAAAGATTC
80262472 AGA
1 AGA
80262475 CTTCTGAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (46 bp):
AGATAGATTTGAGATTGAGCTATTATCAGTTGAGAGTAAAAGATTC
Found at i:80265257 original size:15 final size:16
Alignment explanation
Indices: 80265232--80265264 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
80265222 AGGTGGACAA
*
80265232 TAATGGTTTTATATGT
1 TAATGGTTTTATAAGT
80265248 TAAT-GTTTTATAAGT
1 TAATGGTTTTATAAGT
80265263 TA
1 TA
80265265 TTAACCAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (16 bp):
TAATGGTTTTATAAGT
Found at i:80266246 original size:42 final size:42
Alignment explanation
Indices: 80266126--80266257 Score: 119
Period size: 44 Copynumber: 3.0 Consensus size: 42
80266116 CCAATATGTG
*
80266126 TTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATTG-ATTTGAGA
1 TTTT-GTGTAAGACC-CTGTCTGGGACAG-TGGCATCGTATTT--GA
* * * *
80266170 TTTACGTGTAAGACCATGTCTGGGA-AATCAGCATCGTATTTGA
1 TTT-TGTGTAAGACCCTGTCTGGGACAGT-GGCATCGTATTTGA
80266213 TTTTGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA
1 TTTTGTGTAAGACCCTGTCTGGGACAGTGGCATCG-TATTTGA
80266256 TT
1 TT
80266258 ACATGTAAGA
Statistics
Matches: 72, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
42 25 0.35
43 17 0.24
44 26 0.36
45 4 0.06
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.35
Consensus pattern (42 bp):
TTTTGTGTAAGACCCTGTCTGGGACAGTGGCATCGTATTTGA
Found at i:80266267 original size:43 final size:43
Alignment explanation
Indices: 80266130--80266277 Score: 144
Period size: 43 Copynumber: 3.4 Consensus size: 43
80266120 TATGTGTTTT
* *
80266130 CGTGTAAGACCACGTCTGGGAC-GTTGGCATTGAT-TTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACAG-TGGCATCGATATT-TGA-TTA
* * * *
80266174 CGTGTAAGACCATGTCTGGGA-AATCAGCATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACAGT-GGCATCGATATTTGATTA
*
80266216 TGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACAGTGGCATCGATATTTGATTA
*
80266259 CATGTAAGACCACGTCTGG
1 CGTGTAAGACCACGTCTGG
80266278 CATGTTGGCG
Statistics
Matches: 84, Mismatches: 13, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
42 26 0.31
43 30 0.36
44 28 0.33
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTA
Found at i:80267981 original size:40 final size:40
Alignment explanation
Indices: 80267926--80268147 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
80267916 TATTCGAATG
* *
80267926 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* *
80267966 ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
80268006 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
80268046 ATATCAGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
80268086 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
80268126 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
80268148 TACTTGGGTT
Statistics
Matches: 162, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 14 0.09
40 146 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:80276115 original size:40 final size:40
Alignment explanation
Indices: 80276060--80276281 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
80276050 TATTCGAATG
* * *
80276060 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80276100 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
80276140 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80276180 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80276220 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
80276260 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
80276282 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 152 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:80281223 original size:29 final size:29
Alignment explanation
Indices: 80281179--80281244 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
80281169 AAGCCTTGCC
*
80281179 CTAGTAAATGTAAAGCTATTGTGCCAGCA
1 CTAGTATATGTAAAGCTATTGTGCCAGCA
* * * *
80281208 CTAGTATATGTGAAGCTGTTGTGCGAGCC
1 CTAGTATATGTAAAGCTATTGTGCCAGCA
80281237 CTAGTATA
1 CTAGTATA
80281245 AGCAAACATG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (29 bp):
CTAGTATATGTAAAGCTATTGTGCCAGCA
Found at i:80292116 original size:22 final size:22
Alignment explanation
Indices: 80292076--80292135 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
80292066 CGAACCACTA
* *
80292076 TATTATGCGAGTTAGGCATATG
1 TATTATGCGAGTCAAGCATATG
* *
80292098 TGTTATGCGAGTCAAGCATGTG
1 TATTATGCGAGTCAAGCATATG
*
80292120 TATTATGAGAGTCAAG
1 TATTATGCGAGTCAAG
80292136 AACGTATATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.33
Consensus pattern (22 bp):
TATTATGCGAGTCAAGCATATG
Found at i:80292145 original size:22 final size:22
Alignment explanation
Indices: 80292100--80292145 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
80292090 GGCATATGTG
* * * *
80292100 TTATGCGAGTCAAGCATGTGTA
1 TTATGAGAGTCAAGAACGTATA
80292122 TTATGAGAGTCAAGAACGTATA
1 TTATGAGAGTCAAGAACGTATA
80292144 TT
1 TT
80292146 CCATACAAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.33
Consensus pattern (22 bp):
TTATGAGAGTCAAGAACGTATA
Found at i:80292202 original size:22 final size:22
Alignment explanation
Indices: 80292177--80292224 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
80292167 TGCGAACCAT
**
80292177 TGTATTATATGAGTCAAGTATG
1 TGTATTATACAAGTCAAGTATG
*
80292199 TGTATTATGCAAGTCAAGTATG
1 TGTATTATACAAGTCAAGTATG
80292221 TGTA
1 TGTA
80292225 CTATGGGAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (22 bp):
TGTATTATACAAGTCAAGTATG
Found at i:80292207 original size:103 final size:103
Alignment explanation
Indices: 80292015--80292248 Score: 272
Period size: 103 Copynumber: 2.3 Consensus size: 103
80292005 TGTGAACCAC
* * * *
80292015 TGTATTATGCA-AGTCAAGAACATATATTGCATGCGAGTCATAAATTACATACGAACCACTATAT
1 TGTATTATG-AGAGTCAAGAACGTATATTCCATACAAGTCATAAATTACATACGAACCACTATAT
* * * * *
80292079 TATGCGAGTTAGGCATATGTGTTATGCGAGTCAAGCATG
65 TATACGAGTCAAGCATATGTATTATGCAAGTCAAGCATG
* * *
80292118 TGTATTATGAGAGTCAAGAACGTATATTCCATACAAGTCATAAATTACATGCGAACCATTGTATT
1 TGTATTATGAGAGTCAAGAACGTATATTCCATACAAGTCATAAATTACATACGAACCACTATATT
* * * *
80292183 ATATGAGTCAAGTATGTGTATTATGCAAGTCAAGTATG
66 ATACGAGTCAAGCATATGTATTATGCAAGTCAAGCATG
* * * *
80292221 TGTACTATGGGAGGCAAGAATGTATATT
1 TGTATTATGAGAGTCAAGAACGTATATT
80292249 ATGCGATTCA
Statistics
Matches: 110, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
102 1 0.01
103 109 0.99
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (103 bp):
TGTATTATGAGAGTCAAGAACGTATATTCCATACAAGTCATAAATTACATACGAACCACTATATT
ATACGAGTCAAGCATATGTATTATGCAAGTCAAGCATG
Found at i:80292260 original size:22 final size:22
Alignment explanation
Indices: 80292187--80292268 Score: 83
Period size: 22 Copynumber: 3.7 Consensus size: 22
80292177 TGTATTATAT
* *
80292187 GAGTCAAGTATGTGTATTATGC
1 GAGTCAAGAATGTATATTATGC
* * * * *
80292209 AAGTCAAGTATGTGTACTATGG
1 GAGTCAAGAATGTATATTATGC
*
80292231 GAGGCAAGAATGTATATTATGC
1 GAGTCAAGAATGTATATTATGC
*
80292253 GATTCAAGAATGTATA
1 GAGTCAAGAATGTATA
80292269 CTACATGCAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.32
Consensus pattern (22 bp):
GAGTCAAGAATGTATATTATGC
Found at i:80292300 original size:125 final size:124
Alignment explanation
Indices: 80292094--80292370 Score: 331
Period size: 125 Copynumber: 2.2 Consensus size: 124
80292084 GAGTTAGGCA
* * * *
80292094 TATGTGT-TATGCGAGTCAAGCATGTGTATTATGAGAGTCAAGAACGTATATTCCATACAAGTCA
1 TATGTGTATATGCGAGTCAAGAATGTATATTATGAGAGTCAAGAACGTATACTACATACAAGTCA
* * ** * * *
80292158 TAAATTACATGCGAACCATTGTATTATATGAGTCAAGTATGTGTATTATGCAAGTCAAG
66 TAAATTACATGCAAACCACTGTATTATACAAGTCAAGTAAGTGTACTATGCAAGGCAAG
* * * * * *
80292217 TATGTGTACTATGGGAGGCAAGAATGTATATTATGCGATTCAAGAATGTATACTACATGCAAGTC
1 TATGTGTA-TATGCGAGTCAAGAATGTATATTATGAGAGTCAAGAACGTATACTACATACAAGTC
* *
80292282 ATAAATTACATGCAAACCACTGTATTATGCAAGTCAAGTAAGTGTACTATGCGAGGCAAG
65 ATAAATTACATGCAAACCACTGTATTATACAAGTCAAGTAAGTGTACTATGCAAGGCAAG
* * *
80292342 AATGTATATTATGTGAGTCAAGAATGTAT
1 TATGTGTA-TATGCGAGTCAAGAATGTAT
80292371 GCTGTAGTGA
Statistics
Matches: 128, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
123 7 0.05
125 121 0.95
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (124 bp):
TATGTGTATATGCGAGTCAAGAATGTATATTATGAGAGTCAAGAACGTATACTACATACAAGTCA
TAAATTACATGCAAACCACTGTATTATACAAGTCAAGTAAGTGTACTATGCAAGGCAAG
Found at i:80292354 original size:22 final size:22
Alignment explanation
Indices: 80292329--80292370 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
80292319 GTAAGTGTAC
80292329 TATGCGAGGCAAGAATGTATAT
1 TATGCGAGGCAAGAATGTATAT
* *
80292351 TATGTGAGTCAAGAATGTAT
1 TATGCGAGGCAAGAATGTAT
80292371 GCTGTAGTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (22 bp):
TATGCGAGGCAAGAATGTATAT
Found at i:80295820 original size:28 final size:28
Alignment explanation
Indices: 80295789--80295930 Score: 83
Period size: 29 Copynumber: 5.0 Consensus size: 28
80295779 ATTAATTTTT
80295789 ATTATATATATAAATAAAAGATTTATTA
1 ATTATATATATAAATAAAAGATTTATTA
* * *
80295817 ATTAAAAATATTATATATAAAAGAATATATT-
1 ATT--ATATA-TATAAATAAAAG-ATTTATTA
* * * *
80295848 TTTAT-TATAT-AATTACATATTTATTA
1 ATTATATATATAAATAAAAGATTTATTA
* * *
80295874 TTTTATTTATATAAATAAAAGAGTTATTA
1 -ATTATATATATAAATAAAAGATTTATTA
* * * *
80295903 ATTAAAAATATGAATTAAAAGATATATT
1 ATTATATATAT-AAATAAAAGATTTATT
80295931 TATGAATTAT
Statistics
Matches: 84, Mismatches: 21, Indels: 17
0.69 0.17 0.14
Matches are distributed among these distances:
25 6 0.07
26 4 0.05
27 8 0.10
28 17 0.20
29 26 0.31
30 4 0.05
31 13 0.15
32 6 0.07
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (28 bp):
ATTATATATATAAATAAAAGATTTATTA
Found at i:80295862 original size:86 final size:84
Alignment explanation
Indices: 80295764--80295948 Score: 232
Period size: 86 Copynumber: 2.2 Consensus size: 84
80295754 TAAATTCTAA
* * * *
80295764 TATTATAAAATTAAAATTAATTTTTATTATATATATAAATAAAAGATTTATTAATTAAAAATATT
1 TATTATATAATTAAAATTAATTATT-TTATATATATAAATAAAAGAGTTATTAATTAAAAATATG
80295829 ATATATAAAAGAATATATTT-T-
65 A-AT-TAAAAG-ATATATTTATG
* * *
80295850 TATTATATAATTACATATTTATTATTTTATTTATATAAATAAAAGAGTTATTAATTAAAAATATG
1 TATTATATAATTA-AAATTAATTATTTTATATATATAAATAAAAGAGTTATTAATTAAAAATATG
80295915 AATTAAAAGATATATTTATG
65 AATTAAAAGATATATTTATG
*
80295935 AATTAT-TAATTAAA
1 TATTATATAATTAAA
80295949 TTTTTTTAAA
Statistics
Matches: 87, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
83 9 0.10
84 13 0.15
85 7 0.08
86 49 0.56
87 9 0.10
ACGTcount: A:0.50, C:0.01, G:0.04, T:0.45
Consensus pattern (84 bp):
TATTATATAATTAAAATTAATTATTTTATATATATAAATAAAAGAGTTATTAATTAAAAATATGA
ATTAAAAGATATATTTATG
Found at i:80297571 original size:5 final size:5
Alignment explanation
Indices: 80297561--80297590 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
80297551 TTATACATGT
80297561 AAATA AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA AAATA
80297591 TTAATATCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:80300615 original size:19 final size:19
Alignment explanation
Indices: 80300591--80300634 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
80300581 ATATGCATCC
*
80300591 CACAATA-AAACATAACAAT
1 CACAATAGAAA-AAAACAAT
*
80300610 CACAATAGAAAAAAAGAAT
1 CACAATAGAAAAAAACAAT
80300629 CACAAT
1 CACAAT
80300635 GAATTGAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 19 0.86
20 3 0.14
ACGTcount: A:0.64, C:0.18, G:0.05, T:0.14
Consensus pattern (19 bp):
CACAATAGAAAAAAACAAT
Found at i:80311172 original size:50 final size:50
Alignment explanation
Indices: 80311097--80311192 Score: 174
Period size: 50 Copynumber: 1.9 Consensus size: 50
80311087 CCATGGCAAC
*
80311097 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
*
80311147 AAGTGATAAGTAATAGCTTCGGCTACACTTTTCTGATCAAGGACAA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAA
80311193 CTTCGGCTAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
Found at i:80311199 original size:30 final size:30
Alignment explanation
Indices: 80311163--80311222 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
80311153 TAAGTAATAG
*
80311163 CTTCGGCTACACTTTTCTGATCAAGGACAA
1 CTTCGGCTACACTTATCTGATCAAGGACAA
*
80311193 CTTCGGCTACACTTATCTGATCAATGACAA
1 CTTCGGCTACACTTATCTGATCAAGGACAA
80311223 ATGACAAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (30 bp):
CTTCGGCTACACTTATCTGATCAAGGACAA
Found at i:80311267 original size:31 final size:31
Alignment explanation
Indices: 80311229--80311338 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
80311219 ACAAATGACA
* *
80311229 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
80311260 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
*
80311291 AGTGAAAAATGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
*
80311322 AGTGAATAGTGGTAGCT
1 AGTGAAAAGTGGTAGCT
80311339 TCGAATACAA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
Found at i:80311499 original size:93 final size:90
Alignment explanation
Indices: 80311368--80311592 Score: 224
Period size: 91 Copynumber: 2.4 Consensus size: 90
80311358 GATTTTCGTA
** * * * *
80311368 TAAGACCATATTTGGGATATGGCATCGGTGTGTTATATGCT-ACTA-TATAAGACCATA-TCTGG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATG-TAACTACTATAAGACCATAGT-TGG
* *
80311430 GATATGGCATCCGTGAGATATGTGATTTGTG
64 GATATGGCAT-C--GAGATATG-AATATGTG
* *
80311461 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTAATTACGTGTAAGACCATAGTTGGG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTAACTAC-TATAAGACCATAGTTGGG
* * *
80311526 CTATGGTATCGATATATGAATATGTG
65 ATATGGCATCGAGATATGAATATGTG
80311552 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAATATGT
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTG-ATATGT
80311593 GTAAGACCAT
Statistics
Matches: 113, Mismatches: 13, Indels: 13
0.81 0.09 0.09
Matches are distributed among these distances:
90 1 0.01
91 38 0.34
92 14 0.12
93 36 0.32
94 1 0.01
95 22 0.19
96 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (90 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTAACTACTATAAGACCATAGTTGGGA
TATGGCATCGAGATATGAATATGTG
Found at i:80311520 original size:49 final size:47
Alignment explanation
Indices: 80311415--80311621 Score: 204
Period size: 42 Copynumber: 4.6 Consensus size: 47
80311405 TGCTACTATA
* * * *
80311415 TAAGACCATATCTGGGATATGGCATCCG-TGAGATATGTGATT-TGTG
1 TAAGACCATAGCTGGGCTATGGCAT-CGATGTGATATGTAATTATGTG
*
80311461 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTAATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCG--ATGTGATATGTAATTATGTG
* *
80311510 TAAGACCATAGTTGGGCTATGGTATCGA--T-ATATG-AA-TATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATGTGATATGTAATTATGTG
*
80311552 TAAGACCATAGCTGGGCTATGGCATC-AT-T-ATGTG-AA-TATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATGTGATATGTAATTATGTG
* **
80311594 TAAGACCATAGTTGAACTATGGCATCGA
1 TAAGACCATAGCTGGGCTATGGCATCGA
80311622 GAAAACGAAG
Statistics
Matches: 141, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
41 1 0.01
42 65 0.46
43 3 0.02
44 5 0.04
45 3 0.02
46 23 0.16
47 1 0.01
48 12 0.09
49 28 0.20
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGGCATCGATGTGATATGTAATTATGTG
Found at i:80315881 original size:25 final size:24
Alignment explanation
Indices: 80315853--80315958 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 24
80315843 TTTTATTGTG
80315853 TTTTAAAGTTTAGAGTTTAATTTTA
1 TTTTAAAGTTTA-AGTTTAATTTTA
* * *
80315878 TTTTATAGTTATTAATTTTATTTTTA
1 TTTTAAAG-T-TTAAGTTTAATTTTA
80315904 TTGTGTTTTAAAGTTTATAGTTTAATTTTA
1 -----TTTTAAAGTTTA-AGTTTAATTTTA
*
80315934 TTTTATAG-TT-A--TTAATTTTA
1 TTTTAAAGTTTAAGTTTAATTTTA
80315954 TTTTA
1 TTTTA
80315959 TCTTTTAAGA
Statistics
Matches: 66, Mismatches: 7, Indels: 21
0.70 0.07 0.22
Matches are distributed among these distances:
20 14 0.21
22 1 0.02
24 2 0.03
25 14 0.21
26 11 0.17
27 3 0.05
29 3 0.05
30 11 0.17
31 7 0.11
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.63
Consensus pattern (24 bp):
TTTTAAAGTTTAAGTTTAATTTTA
Found at i:80315892 original size:20 final size:20
Alignment explanation
Indices: 80315869--80315959 Score: 95
Period size: 20 Copynumber: 4.8 Consensus size: 20
80315859 AGTTTAGAGT
80315869 TTAATTTTATTTTATAGTTA
1 TTAATTTTATTTTATAGTTA
*
80315889 TTAATTTTATTTT-TA-TTG
1 TTAATTTTATTTTATAGTTA
* *
80315907 TGT--TTTAAAGTTTATAG-T-
1 T-TAATTT-TATTTTATAGTTA
80315925 TTAATTTTATTTTATAGTTA
1 TTAATTTTATTTTATAGTTA
80315945 TTAATTTTATTTTAT
1 TTAATTTTATTTTAT
80315960 CTTTTAAGAA
Statistics
Matches: 58, Mismatches: 5, Indels: 16
0.73 0.06 0.20
Matches are distributed among these distances:
17 4 0.07
18 16 0.28
19 10 0.17
20 28 0.48
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (20 bp):
TTAATTTTATTTTATAGTTA
Found at i:80315907 original size:56 final size:56
Alignment explanation
Indices: 80315842--80315957 Score: 223
Period size: 56 Copynumber: 2.1 Consensus size: 56
80315832 TTTACAATTG
80315842 TTTTTATTGTGTTTTAAAGTTTAGAGTTTAATTTTATTTTATAGTTATTAATTTTA
1 TTTTTATTGTGTTTTAAAGTTTAGAGTTTAATTTTATTTTATAGTTATTAATTTTA
*
80315898 TTTTTATTGTGTTTTAAAGTTTATAGTTTAATTTTATTTTATAGTTATTAATTTTA
1 TTTTTATTGTGTTTTAAAGTTTAGAGTTTAATTTTATTTTATAGTTATTAATTTTA
80315954 TTTT
1 TTTT
80315958 ATCTTTTAAG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (56 bp):
TTTTTATTGTGTTTTAAAGTTTAGAGTTTAATTTTATTTTATAGTTATTAATTTTA
Found at i:80315959 original size:25 final size:25
Alignment explanation
Indices: 80315872--80315959 Score: 79
Period size: 25 Copynumber: 3.3 Consensus size: 25
80315862 TTAGAGTTTA
80315872 ATTTTATTTTATAGTTATTAATTTT
1 ATTTTATTTTATAGTTATTAATTTT
* * *
80315897 ATTTTTATTGTGTTTTAAAGTT-TATAGTTTA
1 A-TTTTA-----TTTTATAGTTAT-TAATTTT
80315928 ATTTTATTTTATAGTTATTAATTTT
1 ATTTTATTTTATAGTTATTAATTTT
80315953 ATTTTAT
1 ATTTTAT
80315960 CTTTTAAGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 16
0.69 0.08 0.23
Matches are distributed among these distances:
25 22 0.45
26 6 0.12
30 6 0.12
31 15 0.31
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (25 bp):
ATTTTATTTTATAGTTATTAATTTT
Found at i:80324414 original size:19 final size:19
Alignment explanation
Indices: 80324390--80324450 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
80324380 AACATAATAA
80324390 TTTATTGAAATAATAGAAC
1 TTTATTGAAATAATAGAAC
* * *
80324409 TTTATT--TATACT-GAAG
1 TTTATTGAAATAATAGAAC
80324425 TTTAGTTGAAATAATAGAAC
1 TTTA-TTGAAATAATAGAAC
80324445 TTTATT
1 TTTATT
80324451 TATACTGAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 7 0.22
17 6 0.19
19 12 0.38
20 7 0.22
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.44
Consensus pattern (19 bp):
TTTATTGAAATAATAGAAC
Found at i:80324434 original size:36 final size:36
Alignment explanation
Indices: 80324390--80324465 Score: 145
Period size: 36 Copynumber: 2.1 Consensus size: 36
80324380 AACATAATAA
80324390 TTTA-TTGAAATAATAGAACTTTATTTATACTGAAG
1 TTTAGTTGAAATAATAGAACTTTATTTATACTGAAG
80324425 TTTAGTTGAAATAATAGAACTTTATTTATACTGAAG
1 TTTAGTTGAAATAATAGAACTTTATTTATACTGAAG
80324461 TTTAG
1 TTTAG
80324466 CATACTTAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
35 4 0.10
36 36 0.90
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.43
Consensus pattern (36 bp):
TTTAGTTGAAATAATAGAACTTTATTTATACTGAAG
Found at i:80326876 original size:19 final size:22
Alignment explanation
Indices: 80326852--80326900 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
80326842 TATATAAAAT
80326852 TTATAAT-AAT-TAA-TATATA
1 TTATAATGAATATAATTATATA
80326871 TTATAATGAATATAATTATATA
1 TTATAATGAATATAATTATATA
80326893 TTAATAAT
1 TT-ATAAT
80326901 TATCATCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.27
20 3 0.12
21 3 0.12
22 8 0.31
23 5 0.19
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
TTATAATGAATATAATTATATA
Found at i:80326898 original size:16 final size:16
Alignment explanation
Indices: 80326857--80326898 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
80326847 AAAATTTATA
80326857 ATAATTAATATATATT
1 ATAATTAATATATATT
*
80326873 ATAATGAATATA-ATT
1 ATAATTAATATATATT
80326888 ATATATTAATA
1 ATA-ATTAATA
80326899 ATTATCATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
ATAATTAATATATATT
Found at i:80338131 original size:35 final size:35
Alignment explanation
Indices: 80338085--80338155 Score: 117
Period size: 35 Copynumber: 2.0 Consensus size: 35
80338075 CATCTCCGGA
*
80338085 GCTTGGCAAATATGGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGCAAATATGG-AAGGAGATCTTCAAAGATAT
80338120 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
80338155 G
1 G
80338156 TGATCCTAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 4 0.12
35 30 0.88
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
Found at i:80353910 original size:43 final size:42
Alignment explanation
Indices: 80353758--80353983 Score: 276
Period size: 42 Copynumber: 5.3 Consensus size: 42
80353748 ATATTTTTTA
80353758 AAAGGTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCT
1 AAAGGTCATGTTCTTTAGCGGCGTTTGTG-GAAAAGCGCCGCT
* * * * **
80353801 AAAGGT-TTGTTCTATAGTGGCGTTTGTGGCAAAAGTGCTACT
1 AAAGGTCATGTTCTTTAGCGGCGTTTGTGG-AAAAGCGCCGCT
*
80353843 AAAGGT-ATGTTCTTTAGCGGCGTTTGTAGGAAAAGCACCGCT
1 AAAGGTCATGTTCTTTAGCGGCGTTTGT-GGAAAAGCGCCGCT
* *
80353885 AAAGGTCATGTTCTTTAGCGGCGTTTATGGGAAAAGTGCCGCT
1 AAAGGTCATGTTCTTTAGCGGCGTTTGT-GGAAAAGCGCCGCT
* * * **
80353928 AAAGGTCATGTTCTATAGCGACGTTTGTGGTAAAGCGTTGCT
1 AAAGGTCATGTTCTTTAGCGGCGTTTGTGGAAAAGCGCCGCT
80353970 AAAGGTCATGTTCT
1 AAAGGTCATGTTCT
80353984 GTAACACCCC
Statistics
Matches: 156, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.01
42 90 0.58
43 65 0.42
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.31
Consensus pattern (42 bp):
AAAGGTCATGTTCTTTAGCGGCGTTTGTGGAAAAGCGCCGCT
Found at i:80353930 original size:85 final size:85
Alignment explanation
Indices: 80353758--80353983 Score: 303
Period size: 85 Copynumber: 2.7 Consensus size: 85
80353748 ATATTTTTTA
* *
80353758 AAAGGTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGT-TTGTTCTATAGTGGC
1 AAAGGTCATGTTCTTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGGC
* *
80353822 GTTTGTGGCAAAAGTGCTACT
65 GTTTATGGCAAAAGTGCCACT
* *
80353843 AAAGGT-ATGTTCTTTAGCGGCGTTTGTAGGAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGGC
1 AAAGGTCATGTTCTTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGGC
* *
80353907 GTTTATGGGAAAAGTGCCGCT
65 GTTTATGGCAAAAGTGCCACT
* * * **
80353928 AAAGGTCATGTTCTATAGCGACGTTTGTGGTAAAGCGTTGCTAAAGGTCATGTTCT
1 AAAGGTCATGTTCTTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCATGTTCT
80353984 GTAACACCCC
Statistics
Matches: 124, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
84 39 0.31
85 66 0.53
86 19 0.15
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.31
Consensus pattern (85 bp):
AAAGGTCATGTTCTTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCG
TTTATGGCAAAAGTGCCACT
Found at i:80356647 original size:177 final size:177
Alignment explanation
Indices: 80356351--80356705 Score: 692
Period size: 177 Copynumber: 2.0 Consensus size: 177
80356341 CATCTGTTTG
*
80356351 GGGATGAAAAGCGGTACTAAAATGTAACTTGGTACCTAATGCTTCTTGCAATTTCTTCCAAAATC
1 GGGATGAAAAGCGGTACTAAAATGTAACTTGGTACCTAATGCTTCTTGCAATTTCCTCCAAAATC
80356416 GTGATGTGAATCTCGGGTCTCTATCCGACACAATAGAAACAGGTACTCCATGTAATCGAACAATT
66 GTGATGTGAATCTCGGGTCTCTATCCGACACAATAGAAACAGGTACTCCATGTAATCGAACAATT
80356481 TGGGAGACATATAATTCTGCCAATTTATCGAACGAAAAATCCGTACA
131 TGGGAGACATATAATTCTGCCAATTTATCGAACGAAAAATCCGTACA
*
80356528 GGGATGAAAAGCGGTACTAAAATGTAACTTGGTACCTAATGCTTCTTGCAATTTCCTCGAAAATC
1 GGGATGAAAAGCGGTACTAAAATGTAACTTGGTACCTAATGCTTCTTGCAATTTCCTCCAAAATC
80356593 GTGATGTGAATCTCGGGTCTCTATCCGACACAATAGAAACAGGTACTCCATGTAATCGAACAATT
66 GTGATGTGAATCTCGGGTCTCTATCCGACACAATAGAAACAGGTACTCCATGTAATCGAACAATT
80356658 TGGGAGACATATAATTCTGCCAATTTATCGAACGAAAAATCCGTACA
131 TGGGAGACATATAATTCTGCCAATTTATCGAACGAAAAATCCGTACA
80356705 G
1 G
80356706 ACAGGGATAA
Statistics
Matches: 176, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
177 176 1.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (177 bp):
GGGATGAAAAGCGGTACTAAAATGTAACTTGGTACCTAATGCTTCTTGCAATTTCCTCCAAAATC
GTGATGTGAATCTCGGGTCTCTATCCGACACAATAGAAACAGGTACTCCATGTAATCGAACAATT
TGGGAGACATATAATTCTGCCAATTTATCGAACGAAAAATCCGTACA
Found at i:80367161 original size:47 final size:47
Alignment explanation
Indices: 80367107--80367579 Score: 777
Period size: 47 Copynumber: 10.1 Consensus size: 47
80367097 TTAGGATTTT
** * * * *
80367107 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
80367154 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
80367201 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
80367248 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
80367295 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
80367342 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
80367389 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
80367436 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
80367483 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * * * * *
80367530 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCA
80367577 ATG
1 ATG
80367580 CGAAATGTGT
Statistics
Matches: 410, Mismatches: 15, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
47 407 0.99
48 3 0.01
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:80367609 original size:46 final size:46
Alignment explanation
Indices: 80367553--80367735 Score: 294
Period size: 46 Copynumber: 4.0 Consensus size: 46
80367543 GGAAGTGTAT
* *
80367553 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
80367599 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
80367645 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
80367691 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
80367736 TGTATATATA
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:80371243 original size:37 final size:38
Alignment explanation
Indices: 80371174--80371246 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 38
80371164 CGTCCATCTA
* **
80371174 GCACACCACATAAGGACTATGGTAGGCCCATCCACCAT
1 GCACACCACATAAGAACTATAATAGGCCCATCCACCAT
**
80371212 GCACACCACATAA-AACTATAATAGGTTCATCCACC
1 GCACACCACATAAGAACTATAATAGGCCCATCCACC
80371247 TAACACACCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 17 0.57
38 13 0.43
ACGTcount: A:0.36, C:0.33, G:0.14, T:0.18
Consensus pattern (38 bp):
GCACACCACATAAGAACTATAATAGGCCCATCCACCAT
Found at i:80374041 original size:95 final size:95
Alignment explanation
Indices: 80373862--80374044 Score: 262
Period size: 94 Copynumber: 1.9 Consensus size: 95
80373852 TTCTTTCTTA
* * *
80373862 ATGTTTCTTACTATTTCTAGAAAAGAACCAGACCAGTTGTTGCCTTACTGATGATAATAACATAG
1 ATGTTTCTTACTATTTATAGAAAAGAACCAGACCAATTGTTGCATTACTGATGATAATAACATAG
*
80373927 AAAACAAAAAACGAGCAACTTGTTTCCTTC
66 AAAACAAAAAACAAGCAACTTGTTTCCTTC
* * *
80373957 ATGTTT-TTAACTATTTATAGAAAAGAACCAGA-CAATTTTTGTATTGCTGATGATAATAACATA
1 ATGTTTCTT-ACTATTTATAGAAAAGAACCAGACCAATTGTTGCATTACTGATGATAATAACATA
*
80374020 GAAAACAAAAAACCAATCAACTTGT
65 GAAAACAAAAAA-CAAGCAACTTGT
80374045 GAAAACCTGT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
94 40 0.51
95 38 0.49
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (95 bp):
ATGTTTCTTACTATTTATAGAAAAGAACCAGACCAATTGTTGCATTACTGATGATAATAACATAG
AAAACAAAAAACAAGCAACTTGTTTCCTTC
Found at i:80375358 original size:23 final size:23
Alignment explanation
Indices: 80375328--80375373 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
80375318 GGTAGGAGAG
80375328 CTATTAGCACCATAGAACTTGAT
1 CTATTAGCACCATAGAACTTGAT
80375351 CTATTAGCACCATAGAACTTGAT
1 CTATTAGCACCATAGAACTTGAT
80375374 GCAATCACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (23 bp):
CTATTAGCACCATAGAACTTGAT
Found at i:80378537 original size:195 final size:195
Alignment explanation
Indices: 80378217--80378573 Score: 472
Period size: 196 Copynumber: 1.8 Consensus size: 195
80378207 TTACACATAT
* * *
80378217 TTGTGAAGATGATCGGATAATTGATTTGATTTTTAGTGTTAAAATACAAACCATAGTTTTCATTT
1 TTGTGAAGATGATCGGATAATTGATTTGATTTTTAGAGTTAAAAAACAAACCATAGTCTTCATTT
* * * * **
80378282 ATTCTTATGCAATTCTTCATATTACATGTGTTTTTGTGAAGATGGATATTATAATTTATTTAATT
66 ATTCTTATGCAATTCTTCATACTACATGCGTTTTTGTCAACATCAATATTATAATTTATTTAATT
*
80378347 TAT-GAGATTCAAATATAAATTATTATCGTCATGTATGCATATGTAGTTATGAATATTACTTGTG
131 TATAG-GATTCAAATAGAAATTATTATCGTCATGTATGCATATGTAGTTATGAATATTACTTGTG
80378411 C
195 C
* *
80378412 TTGTGAAGATCGATCGTATAATTGATTTGATTTTTAGAGTTAAAAAACAAACTATCA-TCTTCAT
1 TTGTGAAGAT-GATCGGATAATTGATTTGATTTTTAGAGTTAAAAAACAAACCAT-AGTCTTCAT
* * * *
80378476 TTATTCTTTTGCAGTTC-TCAATACTATATGCG-TTTTGTCAACATCAATCA-TATAGTTTATTT
64 TTATTCTTATGCAATTCTTC-ATACTACATGCGTTTTTGTCAACATCAAT-ATTATAATTTATTT
* *
80378538 AATTTGTAGGATTCAAATAGAAATTATTGTCGTCAT
127 AATTTATAGGATTCAAATAGAAATTATTATCGTCAT
80378574 TCATTCATAC
Statistics
Matches: 139, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
195 66 0.47
196 72 0.52
197 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (195 bp):
TTGTGAAGATGATCGGATAATTGATTTGATTTTTAGAGTTAAAAAACAAACCATAGTCTTCATTT
ATTCTTATGCAATTCTTCATACTACATGCGTTTTTGTCAACATCAATATTATAATTTATTTAATT
TATAGGATTCAAATAGAAATTATTATCGTCATGTATGCATATGTAGTTATGAATATTACTTGTGC
Found at i:80381098 original size:39 final size:39
Alignment explanation
Indices: 80381044--80381285 Score: 351
Period size: 39 Copynumber: 6.0 Consensus size: 39
80381034 GAAATGTGTA
* *
80381044 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCATGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
80381083 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
80381122 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
80381161 TGGAAATGTATCCGGGCTAAAGACCGCAGGCTTCGTGCTGTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACC-C--GC--AG-GC--TTCGTGC
*
80381208 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGT
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
80381247 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT-GTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
80381285 T
1 T
80381286 AGTAATAAAA
Statistics
Matches: 186, Mismatches: 9, Indels: 17
0.88 0.04 0.08
Matches are distributed among these distances:
38 4 0.02
39 138 0.74
40 1 0.01
41 2 0.01
42 3 0.02
44 3 0.02
45 2 0.01
46 1 0.01
47 32 0.17
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
Found at i:80381263 original size:86 final size:86
Alignment explanation
Indices: 80381118--80381285 Score: 302
Period size: 86 Copynumber: 2.0 Consensus size: 86
80381108 CGCAGGCTTT
80381118 GTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAG
1 GTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAG
80381183 -ACCGCAGGCTTCGTGCTGTTC
66 TACCGCAGGCTT-GTGCTGTTC
*
80381204 GTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGTTGGAAATGTATCCGGGCTAAAG
1 GTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAG
*
80381269 TCCCGCAGGCTTGTGCT
66 TACCGCAGGCTTGTGCT
80381286 AGTAATAAAA
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
86 69 0.87
87 10 0.13
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.24
Consensus pattern (86 bp):
GTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAG
TACCGCAGGCTTGTGCTGTTC
Found at i:80384003 original size:11 final size:11
Alignment explanation
Indices: 80383987--80384011 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80383977 GAATATGTCA
80383987 AAAAAAAAAAG
1 AAAAAAAAAAG
80383998 AAAAAAAAAAG
1 AAAAAAAAAAG
80384009 AAA
1 AAA
80384012 GACATTTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:80384826 original size:26 final size:26
Alignment explanation
Indices: 80384790--80384839 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
80384780 AGTTGAGTTG
80384790 TCCAAAATCACATATATGATTATGAA
1 TCCAAAATCACATATATGATTATGAA
*
80384816 TCCAAAATCACATATATGGTTATG
1 TCCAAAATCACATATATGATTATG
80384840 TATATGTCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (26 bp):
TCCAAAATCACATATATGATTATGAA
Found at i:80388161 original size:40 final size:40
Alignment explanation
Indices: 80388084--80388307 Score: 265
Period size: 40 Copynumber: 5.5 Consensus size: 40
80388074 ACCCAAGTAT
* *
80388084 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
80388123 CTTCGGGTCTTAGCCTGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
80388163 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
80388203 CTTTGAGACTTAGCCTGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
80388246 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
80388286 CTTCGAGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
80388308 CATTCGAATA
Statistics
Matches: 157, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
39 12 0.08
40 112 0.71
41 1 0.01
43 32 0.20
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:80388266 original size:83 final size:80
Alignment explanation
Indices: 80388084--80388307 Score: 283
Period size: 83 Copynumber: 2.8 Consensus size: 80
80388074 ACCCAAGTAT
* * * *
80388084 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCTGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGAGACTTAGCCTGGATATAG
*
80388147 TCACTAGCATAAATGC
65 TCACTAGCACAAATGC
* * *
80388163 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAGATGCCTTTGAGACTTAGCCTGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCTGGATATAGT
80388227 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * *
80388246 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGAGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCTGGATAT
80388308 CATTCGAATA
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
79 13 0.10
80 46 0.37
81 1 0.01
83 65 0.52
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCTGGATATAGT
CACTAGCACAAATGC
Found at i:80390692 original size:77 final size:77
Alignment explanation
Indices: 80390560--80390713 Score: 263
Period size: 77 Copynumber: 2.0 Consensus size: 77
80390550 ATGAAAGGAA
* *
80390560 GAAAAATAGAGTCAATTTATGTGTAATCTATACAGTTAGCATATGTGGACGAGACCCAGAAGAAT
1 GAAAAATAGAGTCAATTTATGTGTAATCTATACAGTCAGCATATGTGGACAAGACCCAGAAGAAT
*
80390625 GAAACGATTGAT
66 GAAACGACTGAT
* *
80390637 GAAAAATAGAGTCAGTTTATGTGTAATCTATAGAGTCAGCATATGTGGACAAGACCCAGAAGAAT
1 GAAAAATAGAGTCAATTTATGTGTAATCTATACAGTCAGCATATGTGGACAAGACCCAGAAGAAT
80390702 GAAACGACTGAT
66 GAAACGACTGAT
80390714 CTTTGGTATG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (77 bp):
GAAAAATAGAGTCAATTTATGTGTAATCTATACAGTCAGCATATGTGGACAAGACCCAGAAGAAT
GAAACGACTGAT
Done.