Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 240 of 284
Found at i:80391953 original size:28 final size:28
Alignment explanation
Indices: 80391922--80392071 Score: 201
Period size: 28 Copynumber: 5.4 Consensus size: 28
80391912 GTTAGCTTTT
* *
80391922 ATATATGGTCGGCTCTGTTGCCTGAATG
1 ATATATGGTCAGCTCTGTCGCCTGAATG
* *
80391950 ATATATAGTCAGCTCTGTTGCCTGAATG
1 ATATATGGTCAGCTCTGTCGCCTGAATG
* * *
80391978 ATATATGTTCGGCTCTGTCACCTGAATG
1 ATATATGGTCAGCTCTGTCGCCTGAATG
* *
80392006 ATATATCGTTAGCTCTGTCGCCTGAATG
1 ATATATGGTCAGCTCTGTCGCCTGAATG
* *
80392034 ATATATGGTCAGCTTTGTCACCTGAATG
1 ATATATGGTCAGCTCTGTCGCCTGAATG
80392062 ATATATGGTC
1 ATATATGGTC
80392072 GGCCCTACTG
Statistics
Matches: 106, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 106 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.36
Consensus pattern (28 bp):
ATATATGGTCAGCTCTGTCGCCTGAATG
Found at i:80398291 original size:23 final size:20
Alignment explanation
Indices: 80398270--80398313 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
80398260 TTTCCTAAAT
80398270 TAAATT-AA-GATTTTTTTA
1 TAAATTAAATGATTTTTTTA
*
80398288 TAAATGAAATGATTTTTTTA
1 TAAATTAAATGATTTTTTTA
80398308 -AAATTA
1 TAAATTA
80398314 TTTGGGTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 5 0.23
19 7 0.32
20 10 0.45
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (20 bp):
TAAATTAAATGATTTTTTTA
Found at i:80407562 original size:15 final size:15
Alignment explanation
Indices: 80407544--80407574 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
80407534 AAACTCGCAC
80407544 AAACCAAATTCACAT
1 AAACCAAATTCACAT
80407559 AAACCAAATTCACAT
1 AAACCAAATTCACAT
80407574 A
1 A
80407575 CTTGAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
AAACCAAATTCACAT
Found at i:80408194 original size:56 final size:58
Alignment explanation
Indices: 80408106--80408216 Score: 163
Period size: 56 Copynumber: 1.9 Consensus size: 58
80408096 TACTCGTAAC
* *
80408106 CACATATATCGATGCTAACGTACTAGACGTGGTCTTACTCACACACATATATCGAAAT
1 CACATATATCGATGCCAACGTACTAAACGTGGTCTTACTCACACACATATATCGAAAT
* * *
80408164 CACATAT-T-GATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCGA
1 CACATATATCGATGCCAACGTACTAAACGTGGTCTTACTCACACACATATATCGA
80408217 TACCATGGTC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 40 0.83
57 1 0.02
58 7 0.15
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (58 bp):
CACATATATCGATGCCAACGTACTAAACGTGGTCTTACTCACACACATATATCGAAAT
Found at i:80414787 original size:15 final size:15
Alignment explanation
Indices: 80414740--80414787 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
80414730 GCTCAATCAT
* *
80414740 ATAAATCAAACTCAC
1 ATAAACCAAATTCAC
*
80414755 ACAAACCAAATTCAC
1 ATAAACCAAATTCAC
*
80414770 ATAAACCAAATTCGC
1 ATAAACCAAATTCAC
80414785 ATA
1 ATA
80414788 CTTGAATCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.52, C:0.27, G:0.02, T:0.19
Consensus pattern (15 bp):
ATAAACCAAATTCAC
Found at i:80421980 original size:38 final size:38
Alignment explanation
Indices: 80421938--80422284 Score: 496
Period size: 38 Copynumber: 9.1 Consensus size: 38
80421928 CAAGGCCTAA
* * * * *
80421938 ATATAATACCAGTACTAGGCCTGTGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * * *
80421976 ATATAATACCAGCACGAAGCCTACCGGATTTAACCCAG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
80422014 ATATAATACCAGCACGAAGCCTGCGGGATTAAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
80422052 ATATATTACCAGCACGAAGCTTGCAGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
80422090 ATATATTACCAGCACGAAGCCTGCGGCATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
80422128 ATATATTACCAGCACGAAGCCTGCGTGATTGAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
80422166 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
80422204 ATATATTACCAGCACGAAGCCTGCGAGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
80422242 ATATAATACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATATTACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
80422282 ATA
1 ATA
80422285 CACATCAAAT
Statistics
Matches: 278, Mismatches: 29, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
38 265 0.95
39 5 0.02
40 8 0.03
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:80422624 original size:43 final size:44
Alignment explanation
Indices: 80422563--80422648 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 44
80422553 TAACATTTCA
* *
80422563 TTTCACCGGTATTATAGCCTGCTAGGCTCAAAGCCCG-ATATCG
1 TTTCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGAATATCG
*
80422606 TTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAATATC
1 TTTCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGAATATC
80422649 ATATTTTGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 34 0.87
44 5 0.13
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (44 bp):
TTTCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGAATATCG
Found at i:80427057 original size:19 final size:20
Alignment explanation
Indices: 80427029--80427067 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
80427019 TCCCATTATT
80427029 TATTTATTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
*
80427048 TATTTGTTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
80427068 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:80427085 original size:25 final size:23
Alignment explanation
Indices: 80427048--80427093 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
80427038 TTTGTTTTAA
*
80427048 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
80427071 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
80427094 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:80427277 original size:16 final size:16
Alignment explanation
Indices: 80427252--80427288 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
80427242 TTTTTTTATG
*
80427252 GGCCCGGCCCAAACCC
1 GGCCCAGCCCAAACCC
*
80427268 GGCCCAGCCCGAACCC
1 GGCCCAGCCCAAACCC
80427284 GGCCC
1 GGCCC
80427289 GGCCTGGCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.16, C:0.57, G:0.27, T:0.00
Consensus pattern (16 bp):
GGCCCAGCCCAAACCC
Found at i:80430807 original size:24 final size:22
Alignment explanation
Indices: 80430764--80430807 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
80430754 ACGGAGTCGC
*
80430764 AATCATCGAAAAGCCTTTTACA
1 AATCATCGAAAAGCCATTTACA
80430786 AATCATCGATAATAGCCATTTA
1 AATCATCGA-AA-AGCCATTTA
80430808 GTCCCAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 2 0.11
24 8 0.42
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (22 bp):
AATCATCGAAAAGCCATTTACA
Found at i:80439633 original size:22 final size:22
Alignment explanation
Indices: 80439608--80439658 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
80439598 CCATGCAAAG
80439608 AAAATGAAATTTATAGCTCTCT
1 AAAATGAAATTTATAGCTCTCT
80439630 AAAATGAAATTTATAGCTCTCT
1 AAAATGAAATTTATAGCTCTCT
*
80439652 AATATGA
1 AAAATGA
80439659 TGTAAATGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (22 bp):
AAAATGAAATTTATAGCTCTCT
Found at i:80443205 original size:48 final size:48
Alignment explanation
Indices: 80443082--80443319 Score: 262
Period size: 48 Copynumber: 4.9 Consensus size: 48
80443072 AAAAGGGTAA
* * * *
80443082 AATGCCGATGCCATGTTACGGACATGGTCTTACGCTGGCTCTCATACATC
1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATA-A-C
* *
80443132 AATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAC
1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAAC
** * * **
80443180 AATGTTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATT
1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAAC
* * * * *
80443228 GAGGCCGATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATATC
1 AATGCCGATGCCATGTTCC-AGACATGGTCTTACACTGGCTCACATAAC
* * *
80443276 AATACCGATGCCATGTTCCAAACATGATCTTACACTGGCTCACA
1 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACA
80443320 CATAACCCTA
Statistics
Matches: 157, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
47 3 0.02
48 110 0.70
49 4 0.03
50 40 0.25
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (48 bp):
AATGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAAC
Found at i:80443286 original size:96 final size:97
Alignment explanation
Indices: 80443086--80443316 Score: 293
Period size: 96 Copynumber: 2.4 Consensus size: 97
80443076 GGGTAAAATG
* ** * * *
80443086 CCGATGCCATGTTACGGACATGGTCTTACGCTGGCTCTCATACATCAATGCCAATGCCATGTCCC
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATA-ATCAAGGCCAATGCCATGTCCC
* *
80443151 AGACATGGTCTTACACTGGCTCACATAACAATG
65 AGACATGGTCTTACACTAGCTCACATAACAATA
** ** * *
80443184 TTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCAT-ATTGAGGCCGATGCCATGTCCTA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATAATCAAGGCCAATGCCATGTCCCA
* *
80443248 GACATGGTCTTACACTAGCTCTCATATCAATA
66 GACATGGTCTTACACTAGCTCACATAACAATA
*
80443280 CCGATGCCATGTTCCAAACATGATCTTACACTGGCTC
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTC
80443317 ACACATAACC
Statistics
Matches: 114, Mismatches: 19, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
96 80 0.70
98 34 0.30
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (97 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATAATCAAGGCCAATGCCATGTCCCA
GACATGGTCTTACACTAGCTCACATAACAATA
Found at i:80445197 original size:54 final size:54
Alignment explanation
Indices: 80445002--80445208 Score: 222
Period size: 54 Copynumber: 3.9 Consensus size: 54
80444992 TTTTCCTTTT
* * ** *
80445002 GAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* ** *
80445055 GAACTCACCAATG-CATGCCTTGACATGGTCTTACATGGGA-CCTTTTCCTTATA
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* *
80445108 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * * * *
80445163 GAACTTATCAATGTCATGGCTTGGCATGGTCTTACATGAAATCCTT
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTT
80445209 ATCTTACCAA
Statistics
Matches: 130, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
51 2 0.02
52 31 0.24
53 12 0.09
54 50 0.38
55 33 0.25
56 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:80445246 original size:47 final size:47
Alignment explanation
Indices: 80445187--80445308 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 47
80445177 CATGGCTTGG
** *
80445187 CATGGTCTTACATGAAATCCTTATCTTACCAAATGT-CATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAAT-TCCATGTTCCAAA
* *
80445234 CATGGTCATACATGGTATCATTGTCTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATTCCATGTTCCAAA
80445281 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
80445309 GTGCCAATGC
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 66 0.99
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATTCCATGTTCCAAA
Found at i:80455475 original size:37 final size:37
Alignment explanation
Indices: 80455425--80455503 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
80455415 TTATTACGAA
* * *
80455425 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
80455462 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
80455499 GTCTT
1 GTCTT
80455504 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:80455767 original size:47 final size:47
Alignment explanation
Indices: 80455622--80455812 Score: 258
Period size: 47 Copynumber: 4.1 Consensus size: 47
80455612 CCCTTCGGGA
* ** * * * * * *
80455622 CTTATCACATTTATGTACTTTCACATCCATCACGTTGGACACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80455669 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80455715 CTTATCACATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80455762 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80455809 CTTA
1 CTTA
80455813 CTATCATTTC
Statistics
Matches: 127, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
46 38 0.30
47 89 0.70
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80461253 original size:11 final size:11
Alignment explanation
Indices: 80461239--80461278 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
80461229 TGTTTTCTCC
*
80461239 CTATTTTGCTA
1 CTATTTTACTA
80461250 CTATTTTACTA
1 CTATTTTACTA
* *
80461261 TTATGTTACTA
1 CTATTTTACTA
80461272 CTATTTT
1 CTATTTT
80461279 GTTGTTATTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.05, T:0.57
Consensus pattern (11 bp):
CTATTTTACTA
Found at i:80461835 original size:6 final size:6
Alignment explanation
Indices: 80461824--80461851 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
80461814 TTTTTTGTAA
80461824 AATTTT AATTTT AATTTT AATTTT AATT
1 AATTTT AATTTT AATTTT AATTTT AATT
80461852 AATGTGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
AATTTT
Found at i:80466109 original size:16 final size:17
Alignment explanation
Indices: 80466074--80466112 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
80466064 TTCAGTTTCT
80466074 TAATTTATTAAATAAAA
1 TAATTTATTAAATAAAA
* *
80466091 TAATTTA-TCAATTAAA
1 TAATTTATTAAATAAAA
80466107 TAATTT
1 TAATTT
80466113 TCTCAACCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATTTATTAAATAAAA
Found at i:80469708 original size:18 final size:18
Alignment explanation
Indices: 80469685--80469779 Score: 79
Period size: 18 Copynumber: 5.2 Consensus size: 18
80469675 ATATTGCGTC
80469685 TATTATTATTTTTAATCT
1 TATTATTATTTTTAATCT
*
80469703 TATTATTACTTTTT-TTCT
1 TATTATTA-TTTTTAATCT
* **
80469721 TATT-TTAGTACT-ATGCGT
1 TATTATTATTTTTAAT-C-T
80469739 CTATTATTATTTTTAATCT
1 -TATTATTATTTTTAATCT
* *
80469758 TATTATTACTTTTATTCT
1 TATTATTATTTTTAATCT
80469776 TATT
1 TATT
80469780 TTAGTACTAT
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
16 3 0.05
17 4 0.07
18 36 0.59
19 10 0.16
20 6 0.10
21 2 0.03
ACGTcount: A:0.23, C:0.09, G:0.03, T:0.64
Consensus pattern (18 bp):
TATTATTATTTTTAATCT
Found at i:80469745 original size:55 final size:55
Alignment explanation
Indices: 80469679--80469789 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
80469669 ATTTAGATAT
*
80469679 TGCGTCTATTATTATTTTTAATCTTATTATTACTTTTTTTCTTATTTTAGTACTA
1 TGCGTCTATTATTATTTTTAATCTTATTATTACTTTTATTCTTATTTTAGTACTA
80469734 TGCGTCTATTATTATTTTTAATCTTATTATTACTTTTATTCTTATTTTAGTACTA
1 TGCGTCTATTATTATTTTTAATCTTATTATTACTTTTATTCTTATTTTAGTACTA
80469789 T
1 T
80469790 CTGTTTATTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.23, C:0.11, G:0.05, T:0.61
Consensus pattern (55 bp):
TGCGTCTATTATTATTTTTAATCTTATTATTACTTTTATTCTTATTTTAGTACTA
Found at i:80484633 original size:48 final size:48
Alignment explanation
Indices: 80484581--80484677 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
80484571 TTGAGAAATA
*
80484581 TTAATTTTAATGTGAGATGAGGATTTTGCTTGAGGATAAGAAAATGCT
1 TTAATTTTAATGTGAGATGAGGATTTTGCTTGAGGACAAGAAAATGCT
*
80484629 TTAATTTTGATGTGAGATGAGGATTTTGCTTGAGGACAAGAAAATGCT
1 TTAATTTTAATGTGAGATGAGGATTTTGCTTGAGGACAAGAAAATGCT
80484677 T
1 T
80484678 AAGTGTGGGG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (48 bp):
TTAATTTTAATGTGAGATGAGGATTTTGCTTGAGGACAAGAAAATGCT
Found at i:80493722 original size:23 final size:23
Alignment explanation
Indices: 80493689--80493748 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
80493679 GTTTAAGCCT
*
80493689 CACACGGCCGTGTGGAGGCAACG
1 CACACGCCCGTGTGGAGGCAACG
* * *
80493712 CACATGCCCGTATGGAGGCAATG
1 CACACGCCCGTGTGGAGGCAACG
80493735 CACACGCCCGTGTG
1 CACACGCCCGTGTG
80493749 CATTAGGACA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.22, C:0.32, G:0.33, T:0.13
Consensus pattern (23 bp):
CACACGCCCGTGTGGAGGCAACG
Found at i:80496674 original size:19 final size:18
Alignment explanation
Indices: 80496650--80496695 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 18
80496640 GGATATTGTT
80496650 TCCTCATGGCCTCCTCGGG
1 TCCTCATGGCCTCCTC-GG
80496669 TCCTCATGGCCTCCTCGG
1 TCCTCATGGCCTCCTCGG
80496687 TCTCTCATG
1 TC-CTCATG
80496696 CAGCCTCTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.07, C:0.41, G:0.22, T:0.30
Consensus pattern (18 bp):
TCCTCATGGCCTCCTCGG
Found at i:80503147 original size:51 final size:51
Alignment explanation
Indices: 80503092--80503191 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
80503082 CTACCACTCA
*
80503092 ACATGTAA-CACATCCATAATGAACTCGGACCTCTCAACAAGCTCGAATGTT
1 ACATG-AATCACATCCATAATGAACTCAGACCTCTCAACAAGCTCGAATGTT
* * * * *
80503143 ACATGAATCGCATCCATTATGAACTCAGACTTCTCGACGAGCTCGAATG
1 ACATGAATCACATCCATAATGAACTCAGACCTCTCAACAAGCTCGAATG
80503192 CTCGCATCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (51 bp):
ACATGAATCACATCCATAATGAACTCAGACCTCTCAACAAGCTCGAATGTT
Found at i:80503198 original size:43 final size:43
Alignment explanation
Indices: 80503150--80503235 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
80503140 GTTACATGAA
* * * *
80503150 TCGCATCCATTATGAACTCAGACTTCTCGACGAGCTCGAATGC
1 TCGCATCCATAATGAACTCAGACCTCTCAAAGAGCTCGAATGC
*
80503193 TCGCATCCATAATGAACTCAGACCTCTCAAAGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAGACCTCTCAAAGAGCTCGAATGC
80503236 CACATATCTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCAGACCTCTCAAAGAGCTCGAATGC
Found at i:80515090 original size:37 final size:37
Alignment explanation
Indices: 80515047--80515120 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
80515037 AATAAGTTAA
*
80515047 TTTTGATTACATTTAGATAAAGAAAGGTGAAATACAG
1 TTTTGATTACATTTAGATAAAGAAAGGCGAAATACAG
*
80515084 TTTTGATTACATTTAGATCAAGAAAGGCGAAATACAG
1 TTTTGATTACATTTAGATAAAGAAAGGCGAAATACAG
80515121 ACTTCGATCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (37 bp):
TTTTGATTACATTTAGATAAAGAAAGGCGAAATACAG
Found at i:80519355 original size:23 final size:23
Alignment explanation
Indices: 80519325--80519368 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
80519315 GGGTGTTCTA
80519325 AAGGTTCACTTAAAGAAAAAGTT
1 AAGGTTCACTTAAAGAAAAAGTT
80519348 AAGGTTCACTTAAAGAAAAAG
1 AAGGTTCACTTAAAGAAAAAG
80519369 GTTGTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.50, C:0.09, G:0.18, T:0.23
Consensus pattern (23 bp):
AAGGTTCACTTAAAGAAAAAGTT
Found at i:80521814 original size:67 final size:67
Alignment explanation
Indices: 80521741--80521874 Score: 225
Period size: 67 Copynumber: 2.0 Consensus size: 67
80521731 GTGGAAACAA
*
80521741 GATGTTC-AGCTTTGAAGAACAAAGAACCTTAGATTCGGCCAACACAGAACAAAAGCAAAGAAGG
1 GATGTTCGA-CTTTGAAGAACAAAGAACCTTAGATTCAGCCAACACAGAACAAAAGCAAAGAAGG
80521805 TCG
65 TCG
* *
80521808 GATGTTCGACTTTGAAGATCAAAGAACCTTAGATTCAGCCAACATAGAACAAAAGCAAAGAAGGT
1 GATGTTCGACTTTGAAGAACAAAGAACCTTAGATTCAGCCAACACAGAACAAAAGCAAAGAAGGT
80521873 CG
66 CG
80521875 AAGGAAAGAG
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
67 62 0.98
68 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.18
Consensus pattern (67 bp):
GATGTTCGACTTTGAAGAACAAAGAACCTTAGATTCAGCCAACACAGAACAAAAGCAAAGAAGGT
CG
Found at i:80526543 original size:30 final size:30
Alignment explanation
Indices: 80526499--80526587 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
80526489 CAAAGATAAC
80526499 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
80526528 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
80526558 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
80526588 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:80526547 original size:15 final size:15
Alignment explanation
Indices: 80526499--80526578 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
80526489 CAAAGATAAC
*
80526499 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
80526513 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
80526528 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
80526543 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
80526558 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
80526573 AAGAAA
1 AAGAAA
80526579 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:80526587 original size:15 final size:15
Alignment explanation
Indices: 80526510--80526587 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
80526500 AGAAAACCGA
80526510 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
80526525 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
80526539 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
80526554 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
80526570 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
80526585 ATA
1 ATA
80526588 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:80529807 original size:72 final size:72
Alignment explanation
Indices: 80529690--80529834 Score: 272
Period size: 72 Copynumber: 2.0 Consensus size: 72
80529680 CAAATATTTG
*
80529690 AGACTTTTGTGATCTGAAAACACACGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAA
1 AGACTTTTGTGATCCGAAAACACACGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAA
80529755 TGCAAAC
66 TGCAAAC
*
80529762 AGACTTTTGTGATCCGAAAACACATGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAA
1 AGACTTTTGTGATCCGAAAACACACGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAA
80529827 TGCAAAC
66 TGCAAAC
80529834 A
1 A
80529835 CAATGGCGGC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.26
Consensus pattern (72 bp):
AGACTTTTGTGATCCGAAAACACACGGCACTTCTCACCAAACAAATAATGTCGCCATATTTTCAA
TGCAAAC
Found at i:80532995 original size:58 final size:58
Alignment explanation
Indices: 80532925--80533038 Score: 228
Period size: 58 Copynumber: 2.0 Consensus size: 58
80532915 AGTCGAACAT
80532925 GAGGTGTTAACTGACTTTAACCCCTTATAAAATTTATTTTCCAGACACTGCCCAATAC
1 GAGGTGTTAACTGACTTTAACCCCTTATAAAATTTATTTTCCAGACACTGCCCAATAC
80532983 GAGGTGTTAACTGACTTTAACCCCTTATAAAATTTATTTTCCAGACACTGCCCAAT
1 GAGGTGTTAACTGACTTTAACCCCTTATAAAATTTATTTTCCAGACACTGCCCAAT
80533039 CTGTGTACTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (58 bp):
GAGGTGTTAACTGACTTTAACCCCTTATAAAATTTATTTTCCAGACACTGCCCAATAC
Found at i:80538608 original size:49 final size:50
Alignment explanation
Indices: 80538536--80538773 Score: 259
Period size: 49 Copynumber: 4.8 Consensus size: 50
80538526 TGAGGTCACG
*
80538536 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
* ** * * * * *
80538585 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCGCA
* * * * **
80538636 TGTGTAGTACTAAGTGCAGACTACTACATGTATCAAATGGTTAGGT--CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
*
80538684 TGTGAGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
1 TGT--GTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
* *
80538735 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
80538774 GCCTTGTCTA
Statistics
Matches: 153, Mismatches: 30, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
48 4 0.03
49 72 0.47
50 38 0.25
51 39 0.25
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
Found at i:80541876 original size:15 final size:15
Alignment explanation
Indices: 80541839--80541876 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
80541829 TGGATTCTCG
*
80541839 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
80541854 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
80541869 TATTTTGG
1 TATCTTGG
80541877 GCTTCTCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.16, C:0.11, G:0.16, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:80544719 original size:49 final size:49
Alignment explanation
Indices: 80544647--80544821 Score: 242
Period size: 49 Copynumber: 3.5 Consensus size: 49
80544637 TGAGGTCACG
*
80544647 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * *
80544696 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
*
80544747 TGTGTAGTACTAAGTGCAGGCTGCTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
80544796 TATGTACTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
80544822 TGCGCACTAG
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
49 64 0.59
50 4 0.04
51 40 0.37
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:80544815 original size:100 final size:100
Alignment explanation
Indices: 80544642--80544825 Score: 332
Period size: 100 Copynumber: 1.8 Consensus size: 100
80544632 TATTGTGAGG
* * *
80544642 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATATGTACTACT
80544707 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
*
80544742 TCACGTGTGTAGTACTAAGTGCAGGCTGCTACGTGTACCAGATAATTGGTCGCATATGTACTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATATGTACTACT
80544807 AAGTGCAGGCTACTATGCG
66 AAGTGCAGGCTACTATGCG
80544826 CACTAGATAG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATATGTACTACT
AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
Found at i:80568941 original size:18 final size:18
Alignment explanation
Indices: 80568920--80568970 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
80568910 ACAATTCTTT
80568920 TCTCTTATTCTTTTCTCC
1 TCTCTTATTCTTTTCTCC
*
80568938 TCTCTTCA-TCTATTTCTTC
1 TCTCTT-ATTCT-TTTCTCC
80568957 T-TCTTATTCTTTTC
1 TCTCTTATTCTTTTC
80568971 CTCTATAGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
17 5 0.17
18 16 0.55
19 8 0.28
ACGTcount: A:0.08, C:0.29, G:0.00, T:0.63
Consensus pattern (18 bp):
TCTCTTATTCTTTTCTCC
Found at i:80570062 original size:26 final size:26
Alignment explanation
Indices: 80570033--80570090 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
80570023 TTTACTAAAG
*
80570033 TACCCTAAGTATG-AAAATTACCATTA
1 TACCCTAAG-ATGCAAAATGACCATTA
* *
80570059 TACCCTTAGGTGCAAAATGACCATTA
1 TACCCTAAGATGCAAAATGACCATTA
80570085 TACCCT
1 TACCCT
80570091 TAGGGTTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 2 0.07
26 26 0.93
ACGTcount: A:0.36, C:0.24, G:0.10, T:0.29
Consensus pattern (26 bp):
TACCCTAAGATGCAAAATGACCATTA
Found at i:80570239 original size:28 final size:28
Alignment explanation
Indices: 80570197--80570284 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 28
80570187 GGAGGAAGCG
* *
80570197 TTCTGGTGGCTCTGCCATAAATATCTGT
1 TTCTGGTGGCCCTGCCACAAATATCTGT
* *
80570225 TTCTGGTGGCCCTGCCACAATTATCTAT
1 TTCTGGTGGCCCTGCCACAAATATCTGT
* * * * *
80570253 ATCTAGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCCCTGCCACAAATATCTGT
80570279 TTCTGG
1 TTCTGG
80570285 CAGCCATGCT
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
26 4 0.09
27 6 0.13
28 37 0.79
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCCCTGCCACAAATATCTGT
Found at i:80571258 original size:13 final size:13
Alignment explanation
Indices: 80571240--80571279 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
80571230 GATCGACAGG
*
80571240 GACACGCCCATGT
1 GACACGCCCGTGT
*
80571253 GACACGTCCGTGT
1 GACACGCCCGTGT
*
80571266 GACATGCCCGTGT
1 GACACGCCCGTGT
80571279 G
1 G
80571280 CGATTACTCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.20
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:80573435 original size:28 final size:28
Alignment explanation
Indices: 80573372--80573550 Score: 288
Period size: 28 Copynumber: 6.4 Consensus size: 28
80573362 ATATTAAGTC
*
80573372 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
80573399 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
80573427 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
80573455 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
80573483 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
80573511 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
80573540 CGCACACTTAG
1 CGCACACTTAG
80573551 CGCCAATCTC
Statistics
Matches: 143, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 22 0.15
28 105 0.73
29 16 0.11
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80590585 original size:30 final size:30
Alignment explanation
Indices: 80590516--80590585 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
80590506 TCATCAGGGA
* * *
80590516 CACACAGCTATATACCATGACCTTGTGTCG
1 CACACGGCTATATACAATGACCGTGTGTCG
* *
80590546 CATAAGGCTATATACAATGACCGTGTGTCG
1 CACACGGCTATATACAATGACCGTGTGTCG
80590576 CACACGGCTA
1 CACACGGCTA
80590586 AGACATACGC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (30 bp):
CACACGGCTATATACAATGACCGTGTGTCG
Found at i:80590885 original size:12 final size:12
Alignment explanation
Indices: 80590855--80590886 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
80590845 AGCCAAAAAC
*
80590855 ATATCAATATTA
1 ATATCATTATTA
80590867 ATATCATTATTA
1 ATATCATTATTA
80590879 ATATCATT
1 ATATCATT
80590887 TACAAGCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATCATTATTA
Found at i:80593838 original size:40 final size:40
Alignment explanation
Indices: 80593794--80594015 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
80593784 GCTCCTCGTT
*
80593794 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
80593834 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
*
80593874 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
80593914 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
80593953 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
80593994 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
80594016 AGACATCATT
Statistics
Matches: 160, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 114 0.71
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:80593978 original size:119 final size:120
Alignment explanation
Indices: 80593796--80594011 Score: 296
Period size: 119 Copynumber: 1.8 Consensus size: 120
80593786 TCCTCGTTCA
*
80593796 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
80593861 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
80593916 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
80593978 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
80594012 GCCCAGACAT
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.05
119 60 0.71
120 20 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:80605598 original size:39 final size:39
Alignment explanation
Indices: 80605544--80605668 Score: 214
Period size: 39 Copynumber: 3.2 Consensus size: 39
80605534 GAAATGTGTA
80605544 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
80605583 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * *
80605622 TGGAAATGTATTCGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
80605661 TGGTAATA
1 TGGAAATA
80605669 AAATTTCGGG
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
Found at i:80617828 original size:29 final size:30
Alignment explanation
Indices: 80617789--80617867 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
80617779 CTTAATAATC
80617789 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
80617819 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
80617848 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
80617868 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:80624563 original size:40 final size:40
Alignment explanation
Indices: 80624519--80624780 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
80624509 GCTCCTCGTT
* *
80624519 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
80624559 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
80624599 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
80624638 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
80624677 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
80624716 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
80624757 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80624781 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:80630860 original size:43 final size:43
Alignment explanation
Indices: 80630794--80630963 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
80630784 AGCTCATGCA
*
80630794 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACAAATATCG
* *
80630837 ATGCC-ACTGTCCCAGACAG-GGTCTTACA-CAAAATCAAATA-CA
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAAA-CAAATATCG
* * * * * * * *
80630879 ATGTCGATGTCCCAGACATGGTCTTACACGTTAATCATAA-GTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATG-AAAACA-AATATCG
*
80630923 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACAAATAT
80630964 TGAATCCTAT
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
42 29 0.30
43 37 0.38
44 31 0.32
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACAAATATCG
Found at i:80636235 original size:27 final size:27
Alignment explanation
Indices: 80636204--80636381 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
80636194 TAAATTGTAC
80636204 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
80636231 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
80636257 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
80636285 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
80636313 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
80636340 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
80636367 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80636382 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:80636318 original size:82 final size:81
Alignment explanation
Indices: 80636205--80636360 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
80636195 AAATTGTACA
* *
80636205 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
80636269 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
80636286 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
80636351 TGCGAGTTGA
65 TGCGAATTGA
80636361 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:80636372 original size:82 final size:81
Alignment explanation
Indices: 80636201--80636381 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
80636191 GATTAAATTG
* *
80636201 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
80636266 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
80636282 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
80636346 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
80636364 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
80636382 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:80643538 original size:27 final size:27
Alignment explanation
Indices: 80643507--80643684 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
80643497 TAAATTGTAC
80643507 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
80643534 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
80643560 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
80643588 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
80643616 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
80643643 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
80643670 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80643685 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:80643621 original size:82 final size:81
Alignment explanation
Indices: 80643508--80643663 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
80643498 AAATTGTACA
* *
80643508 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
80643572 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
80643589 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
80643654 TGCGAGTTGA
65 TGCGAATTGA
80643664 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:80643675 original size:82 final size:81
Alignment explanation
Indices: 80643504--80643684 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
80643494 GATTAAATTG
* *
80643504 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
80643569 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
80643585 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
80643649 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
80643667 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
80643685 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:80647621 original size:42 final size:42
Alignment explanation
Indices: 80647509--80647670 Score: 148
Period size: 43 Copynumber: 3.8 Consensus size: 42
80647499 AGCTCGTACA
* *
80647509 ATGCCAACATCCCAAACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAAACGTGGTCTTACACGAAATCAAATA-CG
***
80647552 ATGCCATTGTCCCAAACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAACATCCCAAAC-GTGGTCTTACACGAAATCAAATACG
* * * *
80647594 ATGCCAACATCCCAGACGTTGTTTTACACATAAATCATAAGT-CG
1 ATGCCAACATCCCAAACGTGGTCTTACAC-GAAATCA-AA-TACG
* * * *
80647638 ATGCCAACATCTCAGACTTGGTCTTACATGAAA
1 ATGCCAACATCCCAAACGTGGTCTTACACGAAA
80647671 ACACATATCG
Statistics
Matches: 96, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 23 0.24
43 42 0.44
44 29 0.30
45 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (42 bp):
ATGCCAACATCCCAAACGTGGTCTTACACGAAATCAAATACG
Found at i:80649117 original size:29 final size:28
Alignment explanation
Indices: 80649024--80649117 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 28
80649014 TAACACAGTG
*
80649024 TCAGTACAATCTGGGCCAAAGCCCT-AT
1 TCAGTACAATCTGGGCCTAAGCCCTAAT
*
80649051 TCAGTAACAGTACGTCTGGGCCTTAGCCCTTAA-
1 TCAGT-ACA--A--TCTGGGCCTAAGCCC-TAAT
* *
80649084 ACAGTAGCAATATGGGCCTAAGCCCTAAT
1 TCAGTA-CAATCTGGGCCTAAGCCCTAAT
80649113 TCAGT
1 TCAGT
80649118 CTCAACATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
27 5 0.10
28 6 0.12
29 17 0.33
30 1 0.02
31 1 0.02
32 14 0.27
33 7 0.13
34 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (28 bp):
TCAGTACAATCTGGGCCTAAGCCCTAAT
Found at i:80649423 original size:25 final size:25
Alignment explanation
Indices: 80649395--80649464 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
80649385 CTCTTTTAAT
*
80649395 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
80649420 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
80649445 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
80649465 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:80650303 original size:27 final size:26
Alignment explanation
Indices: 80650273--80650350 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
80650263 GGGCGTATTC
*
80650273 GTCATTTTACCATATAAGGGTATTACG
1 GTCATTTTACC-TATAGGGGTATTACG
* *
80650300 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTATAGGGG-TATTACG
*
80650327 GTCTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-TAGGGGTATT
80650351 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
26 5 0.12
27 33 0.80
28 3 0.07
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTACG
Found at i:80650504 original size:27 final size:27
Alignment explanation
Indices: 80650376--80650577 Score: 138
Period size: 27 Copynumber: 7.4 Consensus size: 27
80650366 TACAATGGTG
* * *
80650376 TTTTGGTAAATCTACAAACCAAGGGTA
1 TTTTGGTAATTTTACAAACCAGGGGTA
* ** **
80650403 TTTTAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTACAAACCAGGGGTA
* * * *
80650430 TTTCT-ATAATTTTTAGAAAGTCAAGGGTA
1 TTT-TGGTAA-TTTTACAAA-CCAGGGGTA
** ** *
80650459 TTTTTATAATTTTTTAAATCAGGGGTA
1 TTTTGGTAATTTTACAAACCAGGGGTA
**
80650486 TTTTGGTAATTTTACAAA-TTGAGGGTA
1 TTTTGGTAATTTTACAAACCAG-GGGTA
* *
80650513 TTTTGGTAATTTCACAAACCAGTGGTA
1 TTTTGGTAATTTTACAAACCAGGGGTA
* * *
80650540 TTTCGATAATTTTACAAACTAGGGGTA
1 TTTTGGTAATTTTACAAACCAGGGGTA
80650567 TTTTGGTAATT
1 TTTTGGTAATT
80650578 NNNNNNNNNN
Statistics
Matches: 138, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
26 1 0.01
27 106 0.77
28 17 0.12
29 14 0.10
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAACCAGGGGTA
Found at i:80652036 original size:62 final size:62
Alignment explanation
Indices: 80651939--80652068 Score: 251
Period size: 62 Copynumber: 2.1 Consensus size: 62
80651929 ATGTGTTCAT
*
80651939 CTTCATCAAGCCTTGGCCGAACCTTACCTCTCTCCATAGCTAGGGTATCTTCAACTTCCAAG
1 CTTCATCAAGCCTTAGCCGAACCTTACCTCTCTCCATAGCTAGGGTATCTTCAACTTCCAAG
80652001 CTTCATCAAGCCTTAGCCGAACCTTACCTCTCTCCATAGCTAGGGTATCTTCAACTTCCAAG
1 CTTCATCAAGCCTTAGCCGAACCTTACCTCTCTCCATAGCTAGGGTATCTTCAACTTCCAAG
80652063 CTTCAT
1 CTTCAT
80652069 AGTAAGTGAT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.23, C:0.34, G:0.13, T:0.30
Consensus pattern (62 bp):
CTTCATCAAGCCTTAGCCGAACCTTACCTCTCTCCATAGCTAGGGTATCTTCAACTTCCAAG
Found at i:80661448 original size:46 final size:47
Alignment explanation
Indices: 80661278--80661453 Score: 186
Period size: 46 Copynumber: 3.8 Consensus size: 47
80661268 TGTAACCCGA
* * *
80661278 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-GACCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCATTCGCAT
* * *
80661324 CCATAAGTGAACTTGGACTCAACTCAACAAGCTT-GGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGA--CC-A-TTCGCAT
* *
80661374 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCATTCGCAT
80661417 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80661454 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCATTCGCAT
Found at i:80661912 original size:30 final size:30
Alignment explanation
Indices: 80661878--80661937 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
80661868 ATTTAATACG
80661878 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
80661908 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
80661938 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:80665385 original size:76 final size:77
Alignment explanation
Indices: 80665259--80665411 Score: 290
Period size: 76 Copynumber: 2.0 Consensus size: 77
80665249 AGATCTCAAG
80665259 TCAATCTTTGAAAACCATGTCGCTCATTTTAGCTGATCAAACAAATCATCAATCCTTGGCAAC-G
1 TCAATCTTTGAAAACCATGTCGCTCATTTTAGCTGATCAAACAAATCATCAATCCTTGGCAACGG
80665323 ATACTTGTTTTT
66 ATACTTGTTTTT
*
80665335 TCAATCTTTGAAAACCATGTCGCTCCTTTTAGCTGATCAAACAAATCATCAATCCTTGGCAACGG
1 TCAATCTTTGAAAACCATGTCGCTCATTTTAGCTGATCAAACAAATCATCAATCCTTGGCAACGG
80665400 ATACTTGTTTTT
66 ATACTTGTTTTT
80665412 GATTGTCACC
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
76 62 0.83
77 13 0.17
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.35
Consensus pattern (77 bp):
TCAATCTTTGAAAACCATGTCGCTCATTTTAGCTGATCAAACAAATCATCAATCCTTGGCAACGG
ATACTTGTTTTT
Found at i:80665863 original size:234 final size:233
Alignment explanation
Indices: 80665453--80665921 Score: 839
Period size: 234 Copynumber: 2.0 Consensus size: 233
80665443 ACACACAATC
80665453 TCATAGAACCATCCTTCTTTTTCACAAATAACACGGGAGCACCCCAAGGTGAAAAACTCGGTCTC
1 TCATAGAACCATCCTTCTTTTTCACAAATAACACGGGAGCACCCCAAGGTGAAAAACTCGGTCTC
80665518 ACAAAGCCTTTATCAGTCAACTCTTGCAACTGTGACTTTAATTCTTTCAACTCTGCTGGTGCCAT
66 ACAAAGCCTTTATCAGTCAACTCTTGCAACTGTGACTTTAATTCTTTCAACTCTGCTGGTGCCAT
** *
80665583 TCTATATGGAGCAATCGAGATTGGAGCTATTCTCGGTATCAAATCAATACCAAATTCTACTTCCC
131 TCTATATGGAGCAATCGAGATCAGAGCTATTCCCGGTATCAAATCAATACCAAATTCTACTTCCC
* *
80665648 TGACTGGAGGCAAACCCGGCAATTCTTCTGGAAATACG
196 TGACTAGAGACAAACCCGGCAATTCTTCTGGAAATACG
* *
80665686 TNCATAGAACCATCCTTCTTTTTCACCAATAACACGGGAGCACCCCAAGGTGAAAAACTTGGTCT
1 T-CATAGAACCATCCTTCTTTTTCACAAATAACACGGGAGCACCCCAAGGTGAAAAACTCGGTCT
**
80665751 CACAAAGCCTTTATCAGTCAACTCTTGCAACTGTGACTTTAATTCTTTCATTTCTGCTGGTGCCA
65 CACAAAGCCTTTATCAGTCAACTCTTGCAACTGTGACTTTAATTCTTTCAACTCTGCTGGTGCCA
80665816 TTCTATATGGAGCAATCGAGATCAGAGCTATTCCCGGTATCAAATCAATACCAAATTCTACTTCC
130 TTCTATATGGAGCAATCGAGATCAGAGCTATTCCCGGTATCAAATCAATACCAAATTCTACTTCC
*
80665881 CTGACTAGAGACAAACCCGGTAATTCTTCTGGAAATACG
195 CTGACTAGAGACAAACCCGGCAATTCTTCTGGAAATACG
80665920 TC
1 TC
80665922 CGCAAATTCA
Statistics
Matches: 225, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
233 2 0.01
234 223 0.99
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (233 bp):
TCATAGAACCATCCTTCTTTTTCACAAATAACACGGGAGCACCCCAAGGTGAAAAACTCGGTCTC
ACAAAGCCTTTATCAGTCAACTCTTGCAACTGTGACTTTAATTCTTTCAACTCTGCTGGTGCCAT
TCTATATGGAGCAATCGAGATCAGAGCTATTCCCGGTATCAAATCAATACCAAATTCTACTTCCC
TGACTAGAGACAAACCCGGCAATTCTTCTGGAAATACG
Found at i:80673270 original size:16 final size:15
Alignment explanation
Indices: 80673243--80673276 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
80673233 ATCATTAATA
*
80673243 TATAATTATATCCAT
1 TATAATTATATCAAT
80673258 TATAATATATATCAAT
1 TATAAT-TATATCAAT
80673274 TAT
1 TAT
80673277 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (15 bp):
TATAATTATATCAAT
Found at i:80685793 original size:24 final size:23
Alignment explanation
Indices: 80685708--80685811 Score: 99
Period size: 24 Copynumber: 4.4 Consensus size: 23
80685698 TAGCTCGTAT
80685708 GAGCTTACTGTATCAGCTCAGA-A
1 GAGCTTACTGTATCAGCTCA-ATA
80685731 GAGCTTACTGT-TCAGCTCAATA
1 GAGCTTACTGTATCAGCTCAATA
* *
80685753 AAGCTTACCAT-TTTCAGCTCAATA
1 GAGCTTA-C-TGTATCAGCTCAATA
*
80685777 GAGCTTATTGTTATCAGCTC-ATGAA
1 GAGCTTACTG-TATCAGCTCAAT--A
80685802 GAGCTTACTG
1 GAGCTTACTG
80685812 GCCATGTCTC
Statistics
Matches: 68, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
21 1 0.01
22 16 0.24
23 15 0.22
24 26 0.38
25 10 0.15
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (23 bp):
GAGCTTACTGTATCAGCTCAATA
Found at i:80689215 original size:48 final size:48
Alignment explanation
Indices: 80689144--80689273 Score: 134
Period size: 48 Copynumber: 2.7 Consensus size: 48
80689134 CACATATCGT
* * * ** * * *
80689144 TGCCATATCCCAGATATGGTCTTATTCAAGGTCTCATGTCAGTGCCGA
1 TGCCATGTCCCAGACATGGTCTTATACAAGCACACATATAAGTGCCGA
* * * *
80689192 TGCCATGTCCCAGACGTGGTCTTATACTAGCACACATATAATTGCTGA
1 TGCCATGTCCCAGACATGGTCTTATACAAGCACACATATAAGTGCCGA
* *
80689240 TGCCATGTCCCAGACATGGTCTTACACAGGCACA
1 TGCCATGTCCCAGACATGGTCTTATACAAGCACA
80689274 AATGTCATTA
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTATACAAGCACACATATAAGTGCCGA
Found at i:80692626 original size:40 final size:40
Alignment explanation
Indices: 80692582--80692806 Score: 351
Period size: 40 Copynumber: 5.6 Consensus size: 40
80692572 AACCCAATTA
* * ** *
80692582 CCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* * *
80692622 CCTTCGGGACTTAACTCGGAAATAGCAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
80692662 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
80692702 CCTTCGGGACTTAACCCGGGAATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
80692742 CCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
80692782 CCTTCGGGACTTAACCCGGATATAA
1 CCTTCGGGACTTAACCCGGAAATAA
80692807 TCCTCAATTG
Statistics
Matches: 170, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.18
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
Found at i:80697808 original size:28 final size:28
Alignment explanation
Indices: 80697776--80697845 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
80697766 AATGAGATTG
80697776 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
80697804 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
80697832 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80697846 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:80702299 original size:28 final size:28
Alignment explanation
Indices: 80702267--80702323 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
80702257 TCTCCTAGGC
80702267 TCGTAAAATAATTTTTATTCAATTTCCT
1 TCGTAAAATAATTTTTATTCAATTTCCT
*
80702295 TCGTAAAGTAATTTTTATTCAATTTCCT
1 TCGTAAAATAATTTTTATTCAATTTCCT
80702323 T
1 T
80702324 ACATTTTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.51
Consensus pattern (28 bp):
TCGTAAAATAATTTTTATTCAATTTCCT
Found at i:80708207 original size:43 final size:43
Alignment explanation
Indices: 80708141--80708226 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
80708131 GTGTTGGAGG
* *
80708141 TCTTGTGTTCGATTCTTTGCATTGGTAAGGGATAGTATTTTTT
1 TCTTGTGTTCGATTCTCTACATTGGTAAGGGATAGTATTTTTT
* *
80708184 TCTTGTTTTCTATTCTCTACATTGGTAAGGGATAGTATTTTTT
1 TCTTGTGTTCGATTCTCTACATTGGTAAGGGATAGTATTTTTT
80708227 GTTTAGTTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.17, C:0.10, G:0.20, T:0.52
Consensus pattern (43 bp):
TCTTGTGTTCGATTCTCTACATTGGTAAGGGATAGTATTTTTT
Found at i:80710566 original size:3 final size:3
Alignment explanation
Indices: 80710560--80710617 Score: 52
Period size: 3 Copynumber: 19.7 Consensus size: 3
80710550 AAAAAAGAAT
80710560 TTA TTA TT- TTA TT- TTA TT- TTA TTA TTTA TTA TTTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA -TTA TTA
*
80710605 TT- TTT TTA TTA TT
1 TTA TTA TTA TTA TT
80710618 TTTTTAATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
2 8 0.17
3 30 0.64
4 9 0.19
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (3 bp):
TTA
Found at i:80710568 original size:7 final size:7
Alignment explanation
Indices: 80710558--80710618 Score: 65
Period size: 7 Copynumber: 8.6 Consensus size: 7
80710548 TAAAAAAAGA
80710558 ATTTATT
1 ATTTATT
80710565 ATTTTATTTT
1 A-TTTA--TT
80710575 ATTTTATT
1 A-TTTATT
80710583 ATTTATT
1 ATTTATT
80710590 ATTTATT
1 ATTTATT
80710597 ATTTATT
1 ATTTATT
80710604 A-TT-TT
1 ATTTATT
80710609 -TTTATT
1 ATTTATT
80710615 ATTT
1 ATTT
80710619 TTTTAATTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
5 4 0.08
6 4 0.08
7 25 0.52
8 7 0.15
10 8 0.17
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (7 bp):
ATTTATT
Found at i:80710582 original size:18 final size:17
Alignment explanation
Indices: 80710559--80710628 Score: 76
Period size: 18 Copynumber: 4.2 Consensus size: 17
80710549 AAAAAAAGAA
80710559 TTTATTATTTTATTTTAT
1 TTTATTA-TTTATTTTAT
80710577 TTTATTATTTA--TTA-
1 TTTATTATTTATTTTAT
*
80710591 TTTATTATTTATTATTTT
1 TTTATTATTTATT-TTAT
*
80710609 TTTATTATTT-TTTTAA
1 TTTATTATTTATTTTAT
80710625 TTTA
1 TTTA
80710629 ACTTTAGCCT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
14 11 0.24
15 3 0.07
16 6 0.13
17 8 0.18
18 17 0.38
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTATTTATTTTAT
Found at i:80710597 original size:32 final size:32
Alignment explanation
Indices: 80710558--80710618 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
80710548 TAAAAAAAGA
80710558 ATTTATTATTTTATT-TTATTTTATTATTTATT
1 ATTTATTA-TTTATTATTATTTTATTATTTATT
*
80710590 ATTTATTATTTATTATTTTTTTATTATTT
1 ATTTATTATTTATTATTATTTTATTATTT
80710619 TTTTAATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 6 0.22
32 21 0.78
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (32 bp):
ATTTATTATTTATTATTATTTTATTATTTATT
Found at i:80710619 original size:10 final size:10
Alignment explanation
Indices: 80710560--80710621 Score: 63
Period size: 10 Copynumber: 5.9 Consensus size: 10
80710550 AAAAAAGAAT
80710560 TTATTATTTTA
1 TTATT-TTTTA
80710571 TT-TTATTTTA
1 TTATT-TTTTA
*
80710581 TTATTTATTA
1 TTATTTTTTA
*
80710591 TTTATTATTTA
1 -TTATTTTTTA
80710602 TTATTTTTTTA
1 TTA-TTTTTTA
80710613 TTATTTTTT
1 TTATTTTTT
80710622 TAATTTAACT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
10 23 0.52
11 21 0.48
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
TTATTTTTTA
Found at i:80720219 original size:27 final size:27
Alignment explanation
Indices: 80720192--80720517 Score: 438
Period size: 27 Copynumber: 12.1 Consensus size: 27
80720182 ACCAAAGTAC
* * *
80720192 CCCT-GATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
*
80720218 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
* * *
80720245 CCCTTGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
* *
80720272 CCCTCGATTGACAGAATTACTATTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
*
80720299 CCCGCGATTTACAAAATTACTATTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
*
80720326 CCCTCGATTTATAAAATTACTATTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
* *
80720353 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
* *
80720380 CCCTCGATTGACAGAATTACTATTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
* *
80720407 CCCGCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
*
80720434 CCCTCGATTTATAAAATTACTATTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
* **
80720461 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
* *
80720488 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACTATTTTA
80720515 CCC
1 CCC
80720518 CTAGGATGTT
Statistics
Matches: 268, Mismatches: 31, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
26 4 0.01
27 264 0.99
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACTATTTTA
Found at i:80720333 original size:108 final size:108
Alignment explanation
Indices: 80720196--80720517 Score: 545
Period size: 108 Copynumber: 3.0 Consensus size: 108
80720186 AAGTACCCCT
* * * * *
80720196 GATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTTGATTTACAGAA
1 GATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAA
80720261 TTACTGTTTTACCCTCGATTGACAGAATTACTATTTTACCCGC
66 TTACTGTTTTACCCTCGATTGACAGAATTACTATTTTACCCGC
*
80720304 GATTTACAAAATTACTATTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAA
1 GATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAA
80720369 TTACTGTTTTACCCTCGATTGACAGAATTACTATTTTACCCGC
66 TTACTGTTTTACCCTCGATTGACAGAATTACTATTTTACCCGC
80720412 GATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAA
1 GATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAA
* * * * *
80720477 TTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
66 TTACTGTTTTACCCTCGATTGACAGAATTACTATTTTACCC
80720518 CTAGGATGTT
Statistics
Matches: 202, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
108 202 1.00
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (108 bp):
GATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAA
TTACTGTTTTACCCTCGATTGACAGAATTACTATTTTACCCGC
Found at i:80721053 original size:6 final size:6
Alignment explanation
Indices: 80721022--80721115 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
80721012 TTGCATTCAT
* *
80721022 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
80721071 -TCACCTG ATTCTG ATTCTA ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
80721116 AAGGTTTCTT
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.06
6 56 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:80721057 original size:31 final size:31
Alignment explanation
Indices: 80721022--80721094 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
80721012 TTGCATTCAT
* *
80721022 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
80721053 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
80721084 ATTCTAATTCT
1 ATTCTGATTCT
80721095 CATTTTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:80722140 original size:30 final size:30
Alignment explanation
Indices: 80722104--80722161 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
80722094 AAGTTCTAGT
80722104 TGAAGTGTGATAGTGATAGTAGGATCAGAG
1 TGAAGTGTGATAGTGATAGTAGGATCAGAG
80722134 TGAAGTGTGATAGTGATAGTAGGATCAG
1 TGAAGTGTGATAGTGATAGTAGGATCAG
80722162 TGTGCGCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.03, G:0.36, T:0.28
Consensus pattern (30 bp):
TGAAGTGTGATAGTGATAGTAGGATCAGAG
Found at i:80722687 original size:27 final size:27
Alignment explanation
Indices: 80722660--80722877 Score: 269
Period size: 27 Copynumber: 8.1 Consensus size: 27
80722650 ACCAAAGTAC
*
80722660 CCCT-GATTTACAAAATTATTGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
*
80722686 CCCTCGATTTACAAAATTATTGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* *
80722713 CCCTTGATTTACAGAATTA-TCGTTTTA
1 CCCTCGATTTACAAAATTACT-GTTTTA
* * *
80722740 CCCTCGATTGACAGAATTACTATTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* **
80722767 CCCTCAATTTACAAAATTACAATTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
80722794 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* **
80722821 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* **
80722848 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
80722875 CCC
1 CCC
80722878 CTAGGGTGTT
Statistics
Matches: 172, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
26 5 0.03
27 166 0.97
28 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACTGTTTTA
Found at i:80723158 original size:27 final size:26
Alignment explanation
Indices: 80723114--80723165 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
80723104 CTCGCTGCAA
*
80723114 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
80723141 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
80723166 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:80723315 original size:6 final size:6
Alignment explanation
Indices: 80723284--80723371 Score: 83
Period size: 6 Copynumber: 14.3 Consensus size: 6
80723274 TTGCATTCAC
* *
80723284 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
80723333 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
80723372 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
5 4 0.06
6 55 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:80723319 original size:31 final size:31
Alignment explanation
Indices: 80723284--80723362 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
80723274 TTGCATTCAC
* *
80723284 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
80723315 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
80723346 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
80723363 AGTTCTGATA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:80726631 original size:25 final size:25
Alignment explanation
Indices: 80726585--80726633 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
80726575 CTGTTTTTGA
*
80726585 TAGTATATCCTGAAACTGCTATAGG
1 TAGTATATCCTGAAACTACTATAGG
*
80726610 TAGTATATGCT-AAGACTACTATAG
1 TAGTATATCCTGAA-ACTACTATAG
80726634 ATAGATTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (25 bp):
TAGTATATCCTGAAACTACTATAGG
Found at i:80735008 original size:43 final size:43
Alignment explanation
Indices: 80734861--80735008 Score: 131
Period size: 43 Copynumber: 3.4 Consensus size: 43
80734851 TGTGTTTTCC
* * * * * *
80734861 TGTAAGACCACGCCTGAGACATTGGCATCGACT-TATGATTTATG
1 TGTAAGACCACGTCTGGGATAGTGGCATCGA-TATTTGA-TTACG
* * *
80734905 TGTAAGACCACATCTGGGAT-GTTGGCATCG-TACTTGATTTCG
1 TGTAAGACCACGTCTGGGATAG-TGGCATCGATATTTGATTACG
** * *
80734947 TGTAAGACCGTGTTTGGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGATAGTGGCATCGATATTTGATTACG
80734990 TGTAAGACCACGTCTGGGA
1 TGTAAGACCACGTCTGGGA
80735009 CATTAGCATT
Statistics
Matches: 81, Mismatches: 19, Indels: 9
0.74 0.17 0.08
Matches are distributed among these distances:
42 28 0.35
43 29 0.36
44 24 0.30
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGATAGTGGCATCGATATTTGATTACG
Found at i:80736000 original size:20 final size:20
Alignment explanation
Indices: 80735977--80736016 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
80735967 TTTTTTGAAA
80735977 TTTTATGGAAGAATATGAGT
1 TTTTATGGAAGAATATGAGT
80735997 TTTTATGGAAGAATATGAGT
1 TTTTATGGAAGAATATGAGT
80736017 CTTAGTTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (20 bp):
TTTTATGGAAGAATATGAGT
Found at i:80736794 original size:20 final size:20
Alignment explanation
Indices: 80736756--80736794 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
80736746 ATAATTAAGA
* *
80736756 ACAAGTCAAATATTTATAAT
1 ACAAGTCAAATAATAATAAT
*
80736776 ACAATTCAAATAATAATAA
1 ACAAGTCAAATAATAATAA
80736795 CAAGATCCAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.31
Consensus pattern (20 bp):
ACAAGTCAAATAATAATAAT
Found at i:80746505 original size:67 final size:67
Alignment explanation
Indices: 80746434--80746613 Score: 333
Period size: 67 Copynumber: 2.7 Consensus size: 67
80746424 GACCCACCAT
80746434 ATATATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCA
1 ATATATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCA
80746499 GA
66 GA
80746501 ATATATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCA
1 ATATATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCA
80746566 GA
66 GA
* * *
80746568 ACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
1 ATATATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGA
80746614 ACGCTTCCTC
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 110 1.00
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (67 bp):
ATATATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCA
GA
Found at i:80746591 original size:27 final size:26
Alignment explanation
Indices: 80746543--80746594 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
80746533 GCGAGGCTGC
*
80746543 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
80746569 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
80746595 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80747065 original size:10 final size:10
Alignment explanation
Indices: 80747050--80747080 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
80747040 ACACACCTAG
80747050 TTGATGACGA
1 TTGATGACGA
80747060 TTGATGACGA
1 TTGATGACGA
80747070 TTGATGACGA
1 TTGATGACGA
80747080 T
1 T
80747081 AGCTCCCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.32
Consensus pattern (10 bp):
TTGATGACGA
Found at i:80753195 original size:46 final size:47
Alignment explanation
Indices: 80753051--80753315 Score: 206
Period size: 47 Copynumber: 5.7 Consensus size: 47
80753041 CTTGTGGCTT
* * *
80753051 AGTGTAAGA-CATGTTTGGGACATGCATCGGCTAC-A-TTTTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCT-CGAGATGT-AGAGCC
* ** * * *
80753097 AGTGTAAGACCATGTCTGAGACATGACATCAACATTGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGC-TCGAGATGTAGAGCC
* *
80753145 AGTGTAAGA-CATGTTTGGGACATGCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGG-CTCGAGATGTAGAGCC
* ** * * *
80753191 AGTGTAAGA-CATGTATGGGGTATGTATCGGCTACGAGATG-ATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCT-CGAGATGTAGAGCC
** * *
80753237 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGATAT-GAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTCGAGATGTAGAGCC
80753284 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGG
80753316 TACCTTACCA
Statistics
Matches: 174, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
45 3 0.02
46 67 0.39
47 77 0.44
48 25 0.14
49 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGATGTAGAGCC
Found at i:80753304 original size:140 final size:141
Alignment explanation
Indices: 80753051--80753315 Score: 358
Period size: 140 Copynumber: 1.9 Consensus size: 141
80753041 CTTGTGGCTT
* **
80753051 AGTGTAAGACATGTTTGGGACATGCATCGGCTACATTTTGAGAGCCAGTGTAAGACCATGTCTGA
1 AGTGTAAGACATGTATGGGACATGCATCGGCTACATGATGAGAGCCAGTGTAAGACCATGTCTGA
* *
80753116 GACATGACATCAACATTGAGACGAGAGCTAGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCG
66 GACATGACATCAACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
80753180 AGACGTAAGCC
131 AGACGTAAGCC
** * * *
80753191 AGTGTAAGACATGTATGGGGTATGTATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTATGGGACATGCATCGGCTAC-ATGATGAGAGCCAGTGTAAGACCATGTCTG
* * *
80753255 GGACATGGCATCAAC-TTGAGA-TATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
65 AGACATGACATCAACATTGAGACGA-GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGG
80753316 TACCTTACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
138 1 0.01
139 19 0.18
140 80 0.74
141 8 0.07
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTATGGGACATGCATCGGCTACATGATGAGAGCCAGTGTAAGACCATGTCTGA
GACATGACATCAACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
AGACGTAAGCC
Found at i:80755581 original size:31 final size:31
Alignment explanation
Indices: 80755537--80755599 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
80755527 GTGAGAATGA
*
80755537 TGTTTGAGAATTATTTGTGAAATATTTTGAT
1 TGTTTGAGAATTATTTGTGAAATATTTCGAT
* * *
80755568 TGTTTGGGCATTATTTGTGAAATGTTTCGAT
1 TGTTTGAGAATTATTTGTGAAATATTTCGAT
80755599 T
1 T
80755600 TTTCTGGTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.03, G:0.22, T:0.51
Consensus pattern (31 bp):
TGTTTGAGAATTATTTGTGAAATATTTCGAT
Found at i:80764388 original size:43 final size:43
Alignment explanation
Indices: 80764231--80764389 Score: 166
Period size: 44 Copynumber: 3.7 Consensus size: 43
80764221 TATGTGTTTT
*
80764231 CGTGTAAGACCACGTCTGGGACGTTGGCATCGACT-TGTGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATCTGA-TTA
* * * *
80764275 CGTGTAGGACCACGTCTGGGACGTTGGCATTG-TACACT-ATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATA-TCTGATTA
*
80764317 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATCTGATTA
* *
80764360 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
80764390 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 12, Indels: 17
0.77 0.10 0.14
Matches are distributed among these distances:
41 1 0.01
42 31 0.33
43 31 0.33
44 32 0.34
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATCTGATTA
Found at i:80770494 original size:27 final size:25
Alignment explanation
Indices: 80770436--80770494 Score: 64
Period size: 28 Copynumber: 2.2 Consensus size: 25
80770426 TCAAACTCTT
*
80770436 TTAAAAGAAAACTAAAGAAAAATTC
1 TTAAAAGAAAACTAAAGAAAAATTA
* *
80770461 TTGAAAAGAAAAAGTCAAAGAAAATTTA
1 TT-AAAAG-AAAACT-AAAGAAAAATTA
80770489 TTAAAA
1 TTAAAA
80770495 TGAATTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 2 0.07
26 5 0.18
27 9 0.32
28 12 0.43
ACGTcount: A:0.63, C:0.05, G:0.10, T:0.22
Consensus pattern (25 bp):
TTAAAAGAAAACTAAAGAAAAATTA
Found at i:80772954 original size:27 final size:26
Alignment explanation
Indices: 80772906--80772965 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
80772896 GCGAAGTTGC
*
80772906 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
80772933 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
80772959 CAGATAT
1 CAGATAT
80772966 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80773733 original size:27 final size:27
Alignment explanation
Indices: 80773703--80773821 Score: 184
Period size: 27 Copynumber: 4.4 Consensus size: 27
80773693 GGGGCAAAAT
* * *
80773703 GGTAATTTTACCCCACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80773730 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
80773757 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80773784 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80773811 GGTAATTCTAC
1 GGTAATTCTAC
80773822 AACTTATCCA
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:80793917 original size:27 final size:27
Alignment explanation
Indices: 80793868--80794013 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
80793858 GGGGCAAAAT
* * ** *
80793868 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80793895 GTTAATTCTACCCTACAGGGGTATTTG
1 GGTAATTCTACCCTACAGGGGTATTTC
* ***
80793922 GGTATTTCTACCCTACAAAAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80793949 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80793976 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80794003 GGTAATTCTAC
1 GGTAATTCTAC
80794014 AACTATCCAC
Statistics
Matches: 101, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:80796025 original size:55 final size:55
Alignment explanation
Indices: 80795919--80796026 Score: 137
Period size: 55 Copynumber: 2.0 Consensus size: 55
80795909 GACAGTTTTG
* * * *
80795919 ACCACGGGTGGTGAGCACGAGAGTGTTACATGCCCGTGTTAATTGGACAGGATCA
1 ACCACAGGTGGTGAGCACGAGAGTGTCACACGCCCGTATTAATTGGACAGGATCA
* * *
80795974 ACCACAGGTGGTGGGCACGAGCGTGTCACACGCCCGTATTGATTTGG-CAGGAT
1 ACCACAGGTGGTGAGCACGAGAGTGTCACACGCCCGTATT-AATTGGACAGGAT
80796027 TGCCCACGGC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
55 40 0.89
56 5 0.11
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.21
Consensus pattern (55 bp):
ACCACAGGTGGTGAGCACGAGAGTGTCACACGCCCGTATTAATTGGACAGGATCA
Found at i:80808497 original size:16 final size:16
Alignment explanation
Indices: 80808478--80808573 Score: 56
Period size: 16 Copynumber: 6.0 Consensus size: 16
80808468 ACTATAATGG
80808478 AATAGGGTTGTAATTA
1 AATAGGGTTGTAATTA
***
80808494 AATAGAGG-TGTAAAGG
1 AATAG-GGTTGTAATTA
* *
80808510 AATAGAGTTGTAATTG
1 AATAGGGTTGTAATTA
80808526 AATAGAGG-TGTAATGTA
1 AATAG-GGTTGTAAT-TA
**
80808543 ATATA--GTTGTAATGG
1 A-ATAGGGTTGTAATTA
*
80808558 AATAGAGTTGTAATTA
1 AATAGGGTTGTAATTA
80808574 GTAATTCTAT
Statistics
Matches: 60, Mismatches: 12, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
14 3 0.05
15 3 0.05
16 46 0.77
17 5 0.08
18 3 0.05
ACGTcount: A:0.40, C:0.00, G:0.27, T:0.33
Consensus pattern (16 bp):
AATAGGGTTGTAATTA
Found at i:80808554 original size:48 final size:48
Alignment explanation
Indices: 80808472--80808572 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
80808462 TGGTTCACTA
*
80808472 TAATGGAATAGGGTTGTAATTAAATAGAGGTGTAAAGGAATAGAGTTG
1 TAATTGAATAGGGTTGTAATTAAATAGAGGTGTAAAGGAATAGAGTTG
* * *
80808520 TAATTGAATAGAGG-TGTAATGT-AATATAGTTGTAATGGAATAGAGTTG
1 TAATTGAATAG-GGTTGTAAT-TAAATAGAGGTGTAAAGGAATAGAGTTG
80808568 TAATT
1 TAATT
80808573 AGTAATTCTA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
48 44 0.94
49 3 0.06
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.34
Consensus pattern (48 bp):
TAATTGAATAGGGTTGTAATTAAATAGAGGTGTAAAGGAATAGAGTTG
Found at i:80808571 original size:32 final size:32
Alignment explanation
Indices: 80808472--80808571 Score: 137
Period size: 32 Copynumber: 3.1 Consensus size: 32
80808462 TGGTTCACTA
* *
80808472 TAATGGAATAGGGTTGTAATTAAATAGAGGTG
1 TAATGGAATAGAGTTGTAATTGAATAGAGGTG
*
80808504 TAAAGGAATAGAGTTGTAATTGAATAGAGGTG
1 TAATGGAATAGAGTTGTAATTGAATAGAGGTG
* * * *
80808536 TAATGTAATATAGTTGTAATGGAATAGAGTTG
1 TAATGGAATAGAGTTGTAATTGAATAGAGGTG
80808568 TAAT
1 TAAT
80808572 TAGTAATTCT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (32 bp):
TAATGGAATAGAGTTGTAATTGAATAGAGGTG
Found at i:80808615 original size:46 final size:44
Alignment explanation
Indices: 80808553--80808645 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
80808543 ATATAGTTGT
* *
80808553 AATGGAATAGAGTTGTAATTAGTAATTCTAT-TGTTTGGTTTAATGG
1 AATGGAATAGAGTTGTAA-TAGT-ATTCT-TGTGTTTCGTTGAATGG
80808599 AATGGAATAGAGTTGTAATAGTATTCTTGTGTTTCGTTGAATGG
1 AATGGAATAGAGTTGTAATAGTATTCTTGTGTTTCGTTGAATGG
80808643 AAT
1 AAT
80808646 AGATGTTATA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 1 0.02
44 21 0.48
45 4 0.09
46 18 0.41
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.42
Consensus pattern (44 bp):
AATGGAATAGAGTTGTAATAGTATTCTTGTGTTTCGTTGAATGG
Found at i:80808826 original size:61 final size:56
Alignment explanation
Indices: 80808735--80808876 Score: 158
Period size: 61 Copynumber: 2.4 Consensus size: 56
80808725 TTATTGTTAT
* * * * *
80808735 TTTATTAAATTTTAATAAAATTATTGTTAAATATATTTTAATAAAAATAAAAATAAATAA
1 TTTAATAAATTTTAATATAATTATTATTAAATACAATTTAAT-AAAAT---AATAAATAA
* *
80808795 TTTAATCAAATTTTAATATAATTCTTATTAAATACAATTTAATAAAATAATATATAA
1 TTTAAT-AAATTTTAATATAATTATTATTAAATACAATTTAATAAAATAATAAATAA
80808852 TTTAATAACATTCTTAATATAATTA
1 TTTAATAA-ATT-TTAATATAATTA
80808877 CTATATGAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
56 2 0.03
57 17 0.24
58 11 0.15
60 10 0.14
61 31 0.44
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (56 bp):
TTTAATAAATTTTAATATAATTATTATTAAATACAATTTAATAAAATAATAAATAA
Found at i:80811669 original size:43 final size:43
Alignment explanation
Indices: 80811520--80811678 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 43
80811510 TATGTGTTCT
* * *
80811520 CGTGTAAGACCATGTCTGGGACTTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTA
* * *
80811564 CGTGCAAGACCACGTCTGGGACGTTGGCATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* * *
80811606 TGTGTAAGACC-CTGTTTGGGACAATGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTA
* *
80811649 CATGTAAGACCACATCTGGGACATTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
80811679 TGTACATGTT
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 36 0.38
44 30 0.32
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:80816224 original size:28 final size:28
Alignment explanation
Indices: 80816193--80816248 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
80816183 TAAAGAGAGA
80816193 ATGATATTTTTATTTTCTCTAATCTTCT
1 ATGATATTTTTATTTTCTCTAATCTTCT
80816221 ATGATATTTTTATTTTCTCTAATCTTCT
1 ATGATATTTTTATTTTCTCTAATCTTCT
80816249 TCCCACTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.14, G:0.04, T:0.61
Consensus pattern (28 bp):
ATGATATTTTTATTTTCTCTAATCTTCT
Found at i:80818058 original size:28 final size:28
Alignment explanation
Indices: 80817949--80818045 Score: 158
Period size: 28 Copynumber: 3.5 Consensus size: 28
80817939 ACACGGGCTA
* *
80817949 GGACACGGGTGTGTCATGGCCGTATGAG
1 GGACACGGGCGTGTCATGGCCGTGTGAG
* *
80817977 GGACGCGGGCGTGTCATGGCTGTGTGAG
1 GGACACGGGCGTGTCATGGCCGTGTGAG
80818005 GGACACGGGCGTGTCATGGCCGTGTGAG
1 GGACACGGGCGTGTCATGGCCGTGTGAG
80818033 GGACACGGGCGTG
1 GGACACGGGCGTG
80818046 ACACGGACGT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.14, C:0.20, G:0.47, T:0.19
Consensus pattern (28 bp):
GGACACGGGCGTGTCATGGCCGTGTGAG
Found at i:80823498 original size:48 final size:49
Alignment explanation
Indices: 80823404--80823574 Score: 189
Period size: 48 Copynumber: 3.6 Consensus size: 49
80823394 ATTGTGCGCT
* *
80823404 AGTGTAAGA-CATGTCTGGGGCAT-GCATC-G--GC-TATGAGATGTGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCAGCATATGAGA-GTGTC
*
80823448 AGTGTAATACCATGTTTGGGACATGGCATCGGCA-CATAT-AGAGGTGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCAGCATATGAGA-GTGTC
* * *
80823496 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATGGATATGTGAGAG-C
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-GCATATGAGAGTGTC
80823545 TAGTGTAAGACCATGTTTGGGACATGGCAT
1 -AGTGTAAGACCATGTTTGGGACATGGCAT
80823575 TGACTTAATG
Statistics
Matches: 109, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
44 8 0.07
45 12 0.11
46 5 0.05
47 1 0.01
48 42 0.39
49 4 0.04
50 35 0.32
51 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (49 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCAGCATATGAGAGTGTC
Found at i:80823571 original size:50 final size:48
Alignment explanation
Indices: 80823448--80823627 Score: 188
Period size: 47 Copynumber: 3.7 Consensus size: 48
80823438 GAGATGTGTC
* * *
80823448 AGTGTAATACCATGTTTGGGACATGGCATCGGCA-CATATAGAG-GTGT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATCATATGGAGAG-CT
*
80823495 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGGATATGTGAGAGCT
1 -AGTGTAAGACCATGTTTGGGACATGGCATCGGCAT-CATATG-GAGAGCT
* * * *
80823546 AGTGTAAGACCATGTTTGGGACATGGCATTGAC-TTA-ATGGATGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATCATATGGA-GAGCT
* * *
80823593 AGTGTAAGACCATGTCTAGGACGTGGCATCGGCAT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
80823628 TACACCTTAT
Statistics
Matches: 113, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
46 2 0.02
47 35 0.31
48 35 0.31
49 1 0.01
50 35 0.31
51 4 0.04
52 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCATCATATGGAGAGCT
Found at i:80823627 original size:97 final size:98
Alignment explanation
Indices: 80823448--80823627 Score: 247
Period size: 97 Copynumber: 1.8 Consensus size: 98
80823438 GAGATGTGTC
* * * *
80823448 AGTGTAATACCATGTTTGGGACATGGCATCGGCACATATAGAGGTGTCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACATATAGAGGAGCCAGTGTAAGACCATGTCT
*
80823513 GGGACATGGCATCGGCATGGATATGTGAGAGCT
66 AGGACATGGCATCGGCATGGATATGTGAGAGCT
* * * *
80823546 AGTGTAAGACCATGTTTGGGACATGGCAT-TG-ACTTAATGGATGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACAT-ATAGAGGAGCCAGTGTAAGACCATGTC
*
80823609 TAGGACGTGGCATCGGCAT
65 TAGGACATGGCATCGGCAT
80823628 TACACCTTAT
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
96 3 0.04
97 40 0.56
98 28 0.39
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (98 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCACATATAGAGGAGCCAGTGTAAGACCATGTCT
AGGACATGGCATCGGCATGGATATGTGAGAGCT
Found at i:80824490 original size:30 final size:30
Alignment explanation
Indices: 80824452--80824519 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
80824442 CACACGGGCA
80824452 GAGG-CACGGCCGTGTGTCTCAGCCATGTG
1 GAGGACACGGCCGTGTGTCTCAGCCATGTG
* *
80824481 GAGGACACGGCCGTGTGTCTTAGCCGTGTG
1 GAGGACACGGCCGTGTGTCTCAGCCATGTG
80824511 GAGGACACG
1 GAGGACACG
80824520 ACCTCTGGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 4 0.11
30 32 0.89
ACGTcount: A:0.16, C:0.25, G:0.40, T:0.19
Consensus pattern (30 bp):
GAGGACACGGCCGTGTGTCTCAGCCATGTG
Found at i:80828569 original size:43 final size:42
Alignment explanation
Indices: 80828462--80828571 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
80828452 GACTTATTAT
* *
80828462 TTACGTGTAAGACCACATCTGGGACATTAGCATCGTATTTGA
1 TTACGTGTAAGACCACGTCTGGGACAGTAGCATCGTATTTGA
** * *
80828504 TTTTGTGTAAGACC-CTGTCTGGGACAGTGGCATTGATATTTGA
1 TTACGTGTAAGACCAC-GTCTGGGACAGTAGCATCG-TATTTGA
* *
80828547 TTACATGTAAGACCACGCCTGGGAC
1 TTACGTGTAAGACCACGTCTGGGAC
80828572 GTTTGCATTG
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.02
42 27 0.49
43 26 0.47
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCACGTCTGGGACAGTAGCATCGTATTTGA
Found at i:80828580 original size:43 final size:42
Alignment explanation
Indices: 80828462--80828584 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 42
80828452 GACTTATTAT
* * *
80828462 TTACGTGTAAGACCACATCTGGGACATTAGCATCGTATTTGA
1 TTACGTGTAAGACCACGTCTGGGACGTTAGCATTGTATTTGA
** *
80828504 TTTTGTGTAAGACC-CTGTCTGGGACAG-TGGCATTGATATTTGA
1 TTACGTGTAAGACCAC-GTCTGGGAC-GTTAGCATTG-TATTTGA
* * *
80828547 TTACATGTAAGACCACGCCTGGGACGTTTGCATTGTAT
1 TTACGTGTAAGACCACGTCTGGGACGTTAGCATTGTAT
80828585 GAGTTTTTCA
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
41 1 0.02
42 30 0.46
43 33 0.51
44 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
TTACGTGTAAGACCACGTCTGGGACGTTAGCATTGTATTTGA
Done.