Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 241 of 284
Found at i:80842074 original size:55 final size:55
Alignment explanation
Indices: 80841968--80842075 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 55
80841958 GACAGTTTTG
* * *
80841968 ACCACGGGTGGTAGGCACGAGAGTGTCGCACGCCCGTGTTAATTGGACAGGATCA
1 ACCACAGGTGGTAGGCACGAGAGTGTCACACGCCCGTATTAATTGGACAGGATCA
* * *
80842023 ACCACAGGTGGTGGGCACGAGCGTGTCACACGCCCGTATTGATTTGG-CAGGAT
1 ACCACAGGTGGTAGGCACGAGAGTGTCACACGCCCGTATT-AATTGGACAGGAT
80842076 TGCCCACGGC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
55 41 0.89
56 5 0.11
ACGTcount: A:0.22, C:0.24, G:0.34, T:0.19
Consensus pattern (55 bp):
ACCACAGGTGGTAGGCACGAGAGTGTCACACGCCCGTATTAATTGGACAGGATCA
Found at i:80856402 original size:16 final size:16
Alignment explanation
Indices: 80856383--80856478 Score: 56
Period size: 16 Copynumber: 6.0 Consensus size: 16
80856373 ACTATAATGG
80856383 AATAGGGTTGTAATTA
1 AATAGGGTTGTAATTA
***
80856399 AATAGAGG-TGTAAAGG
1 AATAG-GGTTGTAATTA
* *
80856415 AATAGAGTTGTAATTG
1 AATAGGGTTGTAATTA
80856431 AATAGAGG-TGTAATGTA
1 AATAG-GGTTGTAAT-TA
**
80856448 ATATA--GTTGTAATGG
1 A-ATAGGGTTGTAATTA
*
80856463 AATAGAGTTGTAATTA
1 AATAGGGTTGTAATTA
80856479 GTAATTCTAT
Statistics
Matches: 60, Mismatches: 12, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
14 3 0.05
15 3 0.05
16 46 0.77
17 5 0.08
18 3 0.05
ACGTcount: A:0.40, C:0.00, G:0.27, T:0.33
Consensus pattern (16 bp):
AATAGGGTTGTAATTA
Found at i:80856459 original size:48 final size:48
Alignment explanation
Indices: 80856377--80856477 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
80856367 TGGTTCACTA
*
80856377 TAATGGAATAGGGTTGTAATTAAATAGAGGTGTAAAGGAATAGAGTTG
1 TAATTGAATAGGGTTGTAATTAAATAGAGGTGTAAAGGAATAGAGTTG
* * *
80856425 TAATTGAATAGAGG-TGTAATGT-AATATAGTTGTAATGGAATAGAGTTG
1 TAATTGAATAG-GGTTGTAAT-TAAATAGAGGTGTAAAGGAATAGAGTTG
80856473 TAATT
1 TAATT
80856478 AGTAATTCTA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
48 44 0.94
49 3 0.06
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.34
Consensus pattern (48 bp):
TAATTGAATAGGGTTGTAATTAAATAGAGGTGTAAAGGAATAGAGTTG
Found at i:80856476 original size:32 final size:32
Alignment explanation
Indices: 80856377--80856476 Score: 137
Period size: 32 Copynumber: 3.1 Consensus size: 32
80856367 TGGTTCACTA
* *
80856377 TAATGGAATAGGGTTGTAATTAAATAGAGGTG
1 TAATGGAATAGAGTTGTAATTGAATAGAGGTG
*
80856409 TAAAGGAATAGAGTTGTAATTGAATAGAGGTG
1 TAATGGAATAGAGTTGTAATTGAATAGAGGTG
* * * *
80856441 TAATGTAATATAGTTGTAATGGAATAGAGTTG
1 TAATGGAATAGAGTTGTAATTGAATAGAGGTG
80856473 TAAT
1 TAAT
80856477 TAGTAATTCT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (32 bp):
TAATGGAATAGAGTTGTAATTGAATAGAGGTG
Found at i:80858332 original size:43 final size:43
Alignment explanation
Indices: 80858183--80858341 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
80858173 TATGTGTTCT
** * *
80858183 CGTGTAAGACCATGTCTGGGACTTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACATCTGGGACATTGGCATCGA-TATTTGA-TTA
* * *
80858227 CGTGCAAGACCACATCTGGGACGTTGGCATCG-TATTTGATTT
1 CGTGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTA
* * *
80858269 CGTGTAAGACC-CTGTTTGGGACAATGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-ATCTGGGACATTGGCATCGATATTTGATTA
* *
80858312 CATGTAAGACCACATCTGGGACGTTGGCAT
1 CGTGTAAGACCACATCTGGGACATTGGCAT
80858342 TGTACATGTT
Statistics
Matches: 94, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 28 0.30
43 36 0.38
44 29 0.31
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTA
Found at i:80861464 original size:15 final size:15
Alignment explanation
Indices: 80861441--80861472 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80861431 TCCATTAATG
80861441 TTTCGAGACATTTGT
1 TTTCGAGACATTTGT
*
80861456 TTTCTAGACATTTGT
1 TTTCGAGACATTTGT
80861471 TT
1 TT
80861473 AACTTTGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.12, G:0.16, T:0.53
Consensus pattern (15 bp):
TTTCGAGACATTTGT
Found at i:80863744 original size:48 final size:48
Alignment explanation
Indices: 80863643--80863909 Score: 187
Period size: 48 Copynumber: 5.6 Consensus size: 48
80863633 ATTGTGCGCT
* *
80863643 AGTGTAAGA-CATGTCTAGGACAT-GCATC--CGC-TATGAGATGTGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACGTAT-AGAGGTGTC
* *
80863687 AGTGCAAGACCATGTCTACGACATGGCATCGGCACGTATAGAGGTGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACGTATAGAGGTGTC
* * * * * * *
80863735 AGTGTAAGACCATGTTTGGGACATGGCATTGTCACGGTATGTGAGATCT-
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-GTAT-AGAGGTGTC
* * * * *
80863784 AGTGTAAGACCAT-TCTGGGACATGCCATCGGCCTCGATTTCGA--TAGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGG-CACG-TATAGAGGT-GTC
* * * * * *
80863832 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTAATGGATGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACGT-ATAGAGGTGTC
*
80863879 AGTGTAAGACCATGTCTAGGACGTGGCATCG
1 AGTGTAAGACCATGTCTAGGACATGGCATCG
80863910 ATATTACACC
Statistics
Matches: 177, Mismatches: 30, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
44 8 0.05
45 14 0.08
46 10 0.06
47 31 0.18
48 70 0.40
49 39 0.22
50 5 0.03
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCACGTATAGAGGTGTC
Found at i:80864937 original size:28 final size:28
Alignment explanation
Indices: 80864896--80864986 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
80864886 ACACGGGCTA
* * *
80864896 GGACACGGGTGTGTCATGGCCGTATGAG
1 GGACACGAGCGTGTCATGGCCGTGTGAG
* *
80864924 GGACACGAGCGTGTCATGGTCGTGTAAG
1 GGACACGAGCGTGTCATGGCCGTGTGAG
80864952 GGACAC-AGGCGTGTCATGGCCGTGTGAG
1 GGACACGA-GCGTGTCATGGCCGTGTGAG
80864980 GGACACG
1 GGACACG
80864987 GACGTCTGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 1 0.02
28 53 0.98
ACGTcount: A:0.20, C:0.20, G:0.42, T:0.19
Consensus pattern (28 bp):
GGACACGAGCGTGTCATGGCCGTGTGAG
Found at i:80871355 original size:48 final size:48
Alignment explanation
Indices: 80871251--80871469 Score: 175
Period size: 48 Copynumber: 4.6 Consensus size: 48
80871241 ATTGTGTGCT
*
80871251 AGTGTAAGA-CATGTCTGGGACAT-GCATC--AAC-TATGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGAACGTAT-AGAGGTGTC
* * *
80871295 AGTGTAATACCATGTTTGGGACATGGCATCGGTACGTATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGAACGTATAGAGGTGTC
* * * * * *
80871343 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATGGATATGTGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGAACGTATA-GAG-GTGTC
* * * * * *
80871392 TAGTGTAAGACCATGTCTGGGACATGGCAT-TG-ACTTAATGGACGAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGAACGT-ATAGAGGTGTC
* *
80871440 AGTGTAAGACCATGTCTAGGACGTGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
80871470 AGCATTACAC
Statistics
Matches: 144, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
44 8 0.06
45 13 0.09
46 5 0.03
47 30 0.21
48 49 0.34
49 9 0.06
50 30 0.21
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGAACGTATAGAGGTGTC
Found at i:80891197 original size:55 final size:55
Alignment explanation
Indices: 80891081--80891188 Score: 137
Period size: 55 Copynumber: 2.0 Consensus size: 55
80891071 GACAGTTTTG
* * * *
80891081 ACCACGGGTGGTAGGCACGAGAGTGTCGCACGCCTGTGTTAATTGGACAGGATCA
1 ACCACAGGTGGTAGGCACGAGAGTGTCACACGCCCGTATTAATTGGACAGGATCA
* * *
80891136 ACCACAGGTGGTGGGCACGAGCGTGTCACACGCCCGTATTGATTTGG-CAGGAT
1 ACCACAGGTGGTAGGCACGAGAGTGTCACACGCCCGTATT-AATTGGACAGGAT
80891189 TGCCCACAGC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
55 40 0.89
56 5 0.11
ACGTcount: A:0.22, C:0.23, G:0.34, T:0.20
Consensus pattern (55 bp):
ACCACAGGTGGTAGGCACGAGAGTGTCACACGCCCGTATTAATTGGACAGGATCA
Found at i:80893748 original size:37 final size:37
Alignment explanation
Indices: 80893667--80893752 Score: 120
Period size: 37 Copynumber: 2.4 Consensus size: 37
80893657 ATTATTTGCA
* *
80893667 GCAATAGTAGG-TCTAACTACACTCGATTCAGCTCCT
1 GCAAAAGTAGGTTCTAACTAAACTCGATTCAGCTCCT
***
80893703 GTTCAAGTAGGTTCTAACTAAACTCGATTCAGCTCCT
1 GCAAAAGTAGGTTCTAACTAAACTCGATTCAGCTCCT
80893740 GCAAAAGTAGGTT
1 GCAAAAGTAGGTT
80893753 TAGCATAATC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
36 7 0.17
37 34 0.83
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (37 bp):
GCAAAAGTAGGTTCTAACTAAACTCGATTCAGCTCCT
Found at i:80901802 original size:16 final size:16
Alignment explanation
Indices: 80901777--80901876 Score: 121
Period size: 16 Copynumber: 6.2 Consensus size: 16
80901767 TGGTTCACTA
* *
80901777 TAATAGAATAGGGTTG
1 TAATTGAATAGAGTTG
* *
80901793 TAATTAAATAGAGGTG
1 TAATTGAATAGAGTTG
*
80901809 TAATGGAATAGAGTTG
1 TAATTGAATAGAGTTG
*
80901825 TAATTGAATAGAGGTG
1 TAATTGAATAGAGTTG
80901841 TAA-TGTAATAGAGTTG
1 TAATTG-AATAGAGTTG
*
80901857 TAATGGAATAGAGTTG
1 TAATTGAATAGAGTTG
80901873 TAAT
1 TAAT
80901877 CAGTAATTCT
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
15 2 0.03
16 68 0.96
17 1 0.01
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (16 bp):
TAATTGAATAGAGTTG
Found at i:80901825 original size:32 final size:32
Alignment explanation
Indices: 80901777--80901876 Score: 146
Period size: 32 Copynumber: 3.1 Consensus size: 32
80901767 TGGTTCACTA
* * *
80901777 TAATAGAATAGGGTTGTAATTAAATAGAGGTG
1 TAATGGAATAGAGTTGTAATTGAATAGAGGTG
80901809 TAATGGAATAGAGTTGTAATTGAATAGAGGTG
1 TAATGGAATAGAGTTGTAATTGAATAGAGGTG
* * *
80901841 TAATGTAATAGAGTTGTAATGGAATAGAGTTG
1 TAATGGAATAGAGTTGTAATTGAATAGAGGTG
80901873 TAAT
1 TAAT
80901877 CAGTAATTCT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (32 bp):
TAATGGAATAGAGTTGTAATTGAATAGAGGTG
Found at i:80901853 original size:48 final size:48
Alignment explanation
Indices: 80901777--80901876 Score: 150
Period size: 48 Copynumber: 2.1 Consensus size: 48
80901767 TGGTTCACTA
80901777 TAATAGAATAGGGTTGTAATTAAATAGAGGTGTAATGGAATAGAGTTG
1 TAATAGAATAGGGTTGTAATTAAATAGAGGTGTAATGGAATAGAGTTG
* *
80901825 TAATTGAATAGAGG-TGTAATGT-AATAGAGTTGTAATGGAATAGAGTTG
1 TAATAGAATAG-GGTTGTAAT-TAAATAGAGGTGTAATGGAATAGAGTTG
80901873 TAAT
1 TAAT
80901877 CAGTAATTCT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
48 45 0.94
49 3 0.06
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (48 bp):
TAATAGAATAGGGTTGTAATTAAATAGAGGTGTAATGGAATAGAGTTG
Found at i:80901947 original size:44 final size:46
Alignment explanation
Indices: 80901858--80901950 Score: 129
Period size: 44 Copynumber: 2.1 Consensus size: 46
80901848 ATAGAGTTGT
* * *
80901858 AATGGAATAGAGTTGTAATCAGTAATTCTATTGTTTGGTTTAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCTATTGTTTCGTTGAATGG
80901904 AATGGAATAGAGCTGTAAT-AGT-ATTCT-TGTGTTTCGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCTAT-TGTTTCGTTGAATGG
80901948 AAT
1 AAT
80901951 AGATGTTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 21 0.49
45 3 0.07
46 18 0.42
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (46 bp):
AATGGAATAGAGCTGTAATCAGTAATTCTATTGTTTCGTTGAATGG
Found at i:80902131 original size:61 final size:56
Alignment explanation
Indices: 80902040--80902181 Score: 158
Period size: 61 Copynumber: 2.4 Consensus size: 56
80902030 TTATTGTTAT
* * * * *
80902040 TTTATTAAATTTTAATAAAATTATTGTTAAATATATTTTAATAAAAATAAAAATAAATAA
1 TTTAATAAATTTTAATATAATTATTATTAAATACAATTTAAT-AAAAT---AATAAATAA
* *
80902100 TTTAATCAAATTTTAATATAATTCTTATTAAATACAATTTAATAAAATAATATATAA
1 TTTAAT-AAATTTTAATATAATTATTATTAAATACAATTTAATAAAATAATAAATAA
80902157 TTTAATAACATTCTTAATATAATTA
1 TTTAATAA-ATT-TTAATATAATTA
80902182 CTATATGAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
56 2 0.03
57 17 0.24
58 11 0.15
60 10 0.14
61 31 0.44
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (56 bp):
TTTAATAAATTTTAATATAATTATTATTAAATACAATTTAATAAAATAATAAATAA
Found at i:80904896 original size:42 final size:42
Alignment explanation
Indices: 80904792--80904951 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 42
80904782 ATATGTGTTC
* * *
80904792 TCGTGTAAGACCATGTCTAGGACTTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGATT
*
80904835 TACGTGCAAGACCACGTCTGGGACATTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATT
*
80904878 TCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCG-TATTTGATT
* * * *
80904921 ACATGTAAGACCACATCTGGGACGTTGGCAT
1 TCGTGTAAGACCACGTCTGGGACATTGGCAT
80904952 TGTACATGTT
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
41 1 0.01
42 28 0.28
43 40 0.40
44 31 0.31
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATT
Found at i:80907882 original size:83 final size:83
Alignment explanation
Indices: 80907743--80907906 Score: 319
Period size: 83 Copynumber: 2.0 Consensus size: 83
80907733 CAGAAATATA
*
80907743 GGTAATGTGAGTGGCAGTGAGAGGGAAACAAAAGACATTACTGTTAGATCCGAGGCTCATGCACC
1 GGTAATGTGAGTGGCAGTGAGAGGGAAACAAAAGACATTACTGTTAGATCCGAGGCTCATGAACC
80907808 TGCCAGAGCCTATGCTTG
66 TGCCAGAGCCTATGCTTG
80907826 GGTAATGTGAGTGGCAGTGAGAGGGAAACAAAAGACATTACTGTTAGATCCGAGGCTCATGAACC
1 GGTAATGTGAGTGGCAGTGAGAGGGAAACAAAAGACATTACTGTTAGATCCGAGGCTCATGAACC
80907891 TGCCAGAGCCTATGCT
66 TGCCAGAGCCTATGCT
80907907 ATCTGAGCTC
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 80 1.00
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (83 bp):
GGTAATGTGAGTGGCAGTGAGAGGGAAACAAAAGACATTACTGTTAGATCCGAGGCTCATGAACC
TGCCAGAGCCTATGCTTG
Found at i:80918036 original size:48 final size:44
Alignment explanation
Indices: 80917930--80918050 Score: 138
Period size: 48 Copynumber: 2.6 Consensus size: 44
80917920 ATTGTGCGCT
*
80917930 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTATGAGTTGTGGC
1 AGTGTAAGACATGTTTGGGACATGGCATCGGCTATGAG-TGTGGC
* *
80917974 AGTGTAATAACATGTTTGGGACATGGCATCGGCACGTATAGAG-GTGTC
1 AGTGTAA-GACATGTTTGGGACATGGCATCGG--C-TAT-GAGTGTGGC
80918022 AGTGTAAGACCATGTTTGGGACATGGCAT
1 AGTGTAAGA-CATGTTTGGGACATGGCAT
80918051 TGACTTAATG
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
44 7 0.11
45 14 0.21
46 7 0.11
47 1 0.02
48 31 0.47
49 3 0.05
50 3 0.05
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (44 bp):
AGTGTAAGACATGTTTGGGACATGGCATCGGCTATGAGTGTGGC
Found at i:80918104 original size:30 final size:30
Alignment explanation
Indices: 80918068--80918128 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
80918058 ATGGATGAGC
*
80918068 CAGTGTAAGACCATGTCTAGGACGTGGCAT
1 CAGTGTAAGACCATGTCTAGGACATGGCAT
* *
80918098 CAGTGTAAGACCATGTTTGGGACATGGCAT
1 CAGTGTAAGACCATGTCTAGGACATGGCAT
80918128 C
1 C
80918129 GGCATGGATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (30 bp):
CAGTGTAAGACCATGTCTAGGACATGGCAT
Found at i:80918174 original size:50 final size:48
Alignment explanation
Indices: 80918098--80918230 Score: 153
Period size: 47 Copynumber: 2.8 Consensus size: 48
80918088 GACGTGGCAT
* *
80918098 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGGATATGTGA-GAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATAGGCAT-GA-ATG-GACGAGC
* * * *
80918148 TAGTGTAAGACCATGTCTGGGACATGGCATTGAC-TTAATGGACGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATAGGCATGAATGGACGAGC
* *
80918195 CAGTGTAAGACCATGTCTAGGACGTGGCATAGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCATAGGCAT
80918231 TACACCTTAT
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 2 0.03
47 36 0.51
48 2 0.03
49 1 0.01
50 30 0.42
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATAGGCATGAATGGACGAGC
Found at i:80918197 original size:127 final size:125
Alignment explanation
Indices: 80917973--80918224 Score: 398
Period size: 127 Copynumber: 2.0 Consensus size: 125
80917963 TGAGTTGTGG
* * * *
80917973 CAGTGTAATAACATGTTTGGGACATGGCATCGGCACGTATAGAGGTGTCAGTGTAAGACCATGTT
1 CAGTGTAAGAACATGTTTGGGACATGGCATCGGCACGGATAGAGGAGTCAGTGTAAGACCATGTC
*
80918038 TGGGACATGGCATTGACTTAATGGATGAGCCAGTGTAAGACCATGTCTAGGACGTGGCAT
66 TGGGACATGGCATTGACTTAATGGACGAGCCAGTGTAAGACCATGTCTAGGACGTGGCAT
* * *
80918098 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGGATATGTGAGAG-CTAGTGTAAGACCAT
1 CAGTGTAAGAACATGTTTGGGACATGGCATCGGCACGGATA-GAG-GAGTC-AGTGTAAGACCAT
80918162 GTCTGGGACATGGCATTGACTTAATGGACGAGCCAGTGTAAGACCATGTCTAGGACGTGGCAT
63 GTCTGGGACATGGCATTGACTTAATGGACGAGCCAGTGTAAGACCATGTCTAGGACGTGGCAT
80918225 AGGCATTACA
Statistics
Matches: 116, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
125 37 0.32
126 3 0.03
127 76 0.66
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (125 bp):
CAGTGTAAGAACATGTTTGGGACATGGCATCGGCACGGATAGAGGAGTCAGTGTAAGACCATGTC
TGGGACATGGCATTGACTTAATGGACGAGCCAGTGTAAGACCATGTCTAGGACGTGGCAT
Found at i:80922867 original size:43 final size:42
Alignment explanation
Indices: 80922708--80922871 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 42
80922698 TATGTGTTCT
* * ** *
80922708 CGTGTAAGACCATGTTTGGGACGTGGGCATCG-ACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTAGCATTGTA-TT-TGA-TTA
* *
80922752 CGTGTAAGACCACGTCTGGGACGTTAGCATCGTATTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTAGCATTGTATTTGATTA
* * *
80922794 TGTGTAAAACC-CTGTCTGGGACAG-TGGCATTGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTAGCATTG-TATTTGATTA
* *
80922837 CATGTAAGACCACGTCTGGGACGTTTGCATTGTAT
1 CGTGTAAGACCACGTCTGGGACGTTAGCATTGTAT
80922872 GAGTTTTTCA
Statistics
Matches: 100, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 30 0.30
43 37 0.37
44 31 0.31
45 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTAGCATTGTATTTGATTA
Found at i:80925337 original size:78 final size:78
Alignment explanation
Indices: 80925211--80925370 Score: 257
Period size: 78 Copynumber: 2.1 Consensus size: 78
80925201 AAATTTCCCC
* *
80925211 TGTTTCACATTCTGACAGTTCTAATCTCTCTTCACTAAAAATTAATTATCCCACAATACAGAAAT
1 TGTTTCACATTCTGACAGTTCTAACCTCTCTTCACTAAAAAATAATTATCCCACAATACAGAAAT
80925276 CGGATAATGTTCT
66 CGGATAATGTTCT
* * * * *
80925289 TGTTTCACTTTCTGACAGTTCTGACCTCTCTTCACTAAAAAATAATTATCTCACAGTACAGAACT
1 TGTTTCACATTCTGACAGTTCTAACCTCTCTTCACTAAAAAATAATTATCCCACAATACAGAAAT
80925354 CGGATAATGTTCT
66 CGGATAATGTTCT
80925367 TGTT
1 TGTT
80925371 GATTTATCTT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.37
Consensus pattern (78 bp):
TGTTTCACATTCTGACAGTTCTAACCTCTCTTCACTAAAAAATAATTATCCCACAATACAGAAAT
CGGATAATGTTCT
Found at i:80926129 original size:67 final size:66
Alignment explanation
Indices: 80926043--80926219 Score: 255
Period size: 67 Copynumber: 2.7 Consensus size: 66
80926033 CCACCCATGT
* **
80926043 GACCTAGCCAGTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATG
1 GACCTAGCCAATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACAAA
80926108 C
66 C
* *
80926109 GAACCTAGCCAATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAGCCACGCAA
1 G-ACCTAGCCAATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACAA
80926174 AC
65 AC
* * * *
80926176 GACCTAGCTACATATATCCCGTAGCTCCCTTGTCTACATGGTGT
1 GACCTAGCCA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGT
80926220 ACACATAGTA
Statistics
Matches: 100, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
66 9 0.09
67 91 0.91
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.30
Consensus pattern (66 bp):
GACCTAGCCAATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACAAA
C
Found at i:80927021 original size:30 final size:30
Alignment explanation
Indices: 80926987--80927047 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80926977 TCCTTAACTC
80926987 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
80927017 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
80927047 A
1 A
80927048 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:80938826 original size:22 final size:22
Alignment explanation
Indices: 80938772--80938826 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
80938762 TATGGCCTTT
*
80938772 AGCCATTCTGTCTACAGCGTTG
1 AGCCATTCTGTCTACAGCATTG
* *
80938794 AGCCATCCTGTCTACGGCATTG
1 AGCCATTCTGTCTACAGCATTG
* *
80938816 AGTCGTTCTGT
1 AGCCATTCTGT
80938827 TGACTTAGTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.16, C:0.27, G:0.24, T:0.33
Consensus pattern (22 bp):
AGCCATTCTGTCTACAGCATTG
Found at i:80940499 original size:20 final size:20
Alignment explanation
Indices: 80940460--80940499 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
80940450 TATGAATGTA
* *
80940460 AAATTTTTCTAAGTGTTCAG
1 AAATTTTTATAAGTGATCAG
*
80940480 AAATTTTTATATGTGATCAG
1 AAATTTTTATAAGTGATCAG
80940500 TTTAGTCTCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (20 bp):
AAATTTTTATAAGTGATCAG
Found at i:80945669 original size:16 final size:16
Alignment explanation
Indices: 80945643--80945693 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
80945633 GTAGATCAGC
* * *
80945643 AAATCCCGAAATGCCG
1 AAATGCCGAAAAGTCG
*
80945659 AAAAGCCGAAAAGTCG
1 AAATGCCGAAAAGTCG
*
80945675 AAATGCCAAAAAGTCG
1 AAATGCCGAAAAGTCG
80945691 AAA
1 AAA
80945694 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.49, C:0.22, G:0.20, T:0.10
Consensus pattern (16 bp):
AAATGCCGAAAAGTCG
Found at i:80945946 original size:29 final size:29
Alignment explanation
Indices: 80945904--80946056 Score: 218
Period size: 29 Copynumber: 5.3 Consensus size: 29
80945894 AAAGAATATT
* *
80945904 TATGAATGTGATTTGGGCCTAATGGGTCG
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
80945933 TATGAATGTGATTTGGGCCTAATGGGCCG
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
80945962 TATGAATGTGATTTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
80945991 TACGAATATGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
80946020 TATGAATGAGA-TTGGGCCTACTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
80946048 TATGCATGT
1 TATGAATGT
80946057 ATGTAGACCT
Statistics
Matches: 112, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
28 23 0.21
29 89 0.79
ACGTcount: A:0.23, C:0.14, G:0.32, T:0.31
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:80950885 original size:45 final size:45
Alignment explanation
Indices: 80950836--80950936 Score: 139
Period size: 45 Copynumber: 2.2 Consensus size: 45
80950826 TACGATGCTG
* * *
80950836 ATGTCCTAGACATAGTCTTGCACATAACCACATAGATCGATGCCA
1 ATGTCCCAGACATAGCCTTACACATAACCACATAGATCGATGCCA
* * *
80950881 ATGTCCCAGACGTGGCCTTACACGTAACCACATAGATCGATGCCA
1 ATGTCCCAGACATAGCCTTACACATAACCACATAGATCGATGCCA
*
80950926 ACGTCCCAGAC
1 ATGTCCCAGAC
80950937 GTGGTCTTAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.21
Consensus pattern (45 bp):
ATGTCCCAGACATAGCCTTACACATAACCACATAGATCGATGCCA
Found at i:80950937 original size:45 final size:45
Alignment explanation
Indices: 80950850--80950991 Score: 189
Period size: 45 Copynumber: 3.2 Consensus size: 45
80950840 CCTAGACATA
* * *
80950850 GTCTTGCACATAACCACATAGATCGATGCCAATGTCCCAGACGTG
1 GTCTTACACGTAACCACATAGATCGATGCCAACGTCCCAGACGTG
*
80950895 GCCTTACACGTAACCACATAGATCGATGCCAACGTCCCAGACGTG
1 GTCTTACACGTAACCACATAGATCGATGCCAACGTCCCAGACGTG
* * *
80950940 GTCTTACACGAAAACA-ATTATG-TCGATGCCAACATCCCAGACGTG
1 GTCTTACACGTAACCACA-TA-GATCGATGCCAACGTCCCAGACGTG
80950985 GTCTTAC
1 GTCTTAC
80950992 TCGGAAACAC
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
44 1 0.01
45 85 0.98
46 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (45 bp):
GTCTTACACGTAACCACATAGATCGATGCCAACGTCCCAGACGTG
Found at i:80953898 original size:42 final size:43
Alignment explanation
Indices: 80953821--80953958 Score: 147
Period size: 42 Copynumber: 3.2 Consensus size: 43
80953811 CCGGACGTGG
* * * * *
80953821 TCTTACATGTAATTCAG-TATCAATGCCTCTGTCCCAGACAGGG
1 TCTTACATGTAAATCAGATA-CGATGCCTATGTCCCAGACACGA
*
80953864 TCTTACATG-AAATCAGATACGATGCCTATGTCCCAGACATGA
1 TCTTACATGTAAATCAGATACGATGCCTATGTCCCAGACACGA
* * *
80953906 TCTTACACGTAAATCTCAAAT-CGAGGCCTATGTCCCAGACACGA
1 TCTTACATGTAAA--TCAGATACGATGCCTATGTCCCAGACACGA
80953950 TCTTACATG
1 TCTTACATG
80953959 ATATCTCAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
42 33 0.41
43 14 0.17
44 29 0.36
45 5 0.06
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
TCTTACATGTAAATCAGATACGATGCCTATGTCCCAGACACGA
Found at i:80953944 original size:44 final size:44
Alignment explanation
Indices: 80953845--80953969 Score: 148
Period size: 44 Copynumber: 2.9 Consensus size: 44
80953835 CAGTATCAAT
* * * * *
80953845 GCCTCTGTCCCAGACAGGGTCTTACATGAAA--TCAGATACGAT
1 GCCTATGTCCCAGACACGATCTTACATGAAATCTCAAATACGAG
* *
80953887 GCCTATGTCCCAGACATGATCTTACACGTAAATCTCAAAT-CGAG
1 GCCTATGTCCCAGACACGATCTTACATG-AAATCTCAAATACGAG
*
80953931 GCCTATGTCCCAGACACGATCTTACATGATATCTCAAAT
1 GCCTATGTCCCAGACACGATCTTACATGAAATCTCAAAT
80953970 TAATGTCAAC
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
42 24 0.34
43 13 0.18
44 29 0.41
45 5 0.07
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (44 bp):
GCCTATGTCCCAGACACGATCTTACATGAAATCTCAAATACGAG
Found at i:80961411 original size:28 final size:27
Alignment explanation
Indices: 80961379--80961480 Score: 78
Period size: 28 Copynumber: 3.5 Consensus size: 27
80961369 TCAGAGTTAA
80961379 CTGGGCCTTAGCCCATATCAATAACAAT
1 CTGGGCC-TAGCCCATATCAATAACAAT
* ** **
80961407 CTGGGCCATAGCCCCTTACTGTATCAGAGTAT
1 CTGGGCC-TAG-CCCATA-TCAAT-A-ACAAT
*
80961439 ACTGGGCCTAGCCCATATCAATATCAAT
1 -CTGGGCCTAGCCCATATCAATAACAAT
80961467 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
80961481 TCTTACAAGT
Statistics
Matches: 56, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
27 7 0.12
28 18 0.32
29 6 0.11
30 6 0.11
31 6 0.11
32 6 0.11
33 7 0.12
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAATAACAAT
Found at i:80961467 original size:60 final size:62
Alignment explanation
Indices: 80961368--80961486 Score: 190
Period size: 60 Copynumber: 2.0 Consensus size: 62
80961358 CTATTTAGAA
80961368 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATAACAATCTGGGCCATAGCCC-CTTACTGT
1 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATAACAATCTGGGCCATAGCCCTCTTACTGT
* *
80961429 ATCAGAG-TATACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCGTAGCCCTCTTAC
1 ATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATAACAATCTGGGCCATAGCCCTCTTAC
80961487 AAGTCGAGAT
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
60 34 0.63
61 20 0.37
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (62 bp):
ATCAGAGTTAACTGGGCCTTAGCCCATATCAATAACAATCTGGGCCATAGCCCTCTTACTGT
Found at i:80961505 original size:60 final size:59
Alignment explanation
Indices: 80961368--80961516 Score: 178
Period size: 60 Copynumber: 2.5 Consensus size: 59
80961358 CTATTTAGAA
*
80961368 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATAACAATCTGGGCCATAGCCCCTTACTG
1 ATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATAACAATCTGGGCCATAGCCCCTTACAG
* *
80961428 TATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCGTAGCCCTCTTACA-
1 -ATCAGAGTATACTGGGCCTAGCCCATATCAATAACAATCTGGGCCATAGCCC-CTTACAG
* *
80961488 AGTC-GAGATATATTGGGCCTTGCCCATAT
1 A-TCAGAG-TATACTGGGCCTAGCCCATAT
80961517 TAACACAGTT
Statistics
Matches: 79, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
59 4 0.05
60 53 0.67
61 21 0.27
62 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATAACAATCTGGGCCATAGCCCCTTACAG
Found at i:80976401 original size:25 final size:23
Alignment explanation
Indices: 80976346--80976401 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 23
80976336 TTTCGGCCAG
80976346 AGAAGAAAAGAAGGAGAAAAAGA
1 AGAAGAAAAGAAGGAGAAAAAGA
*
80976369 AAATAGAAGAAGAGAGGAG-AAAAGA
1 AGA-AGAA-AAGA-AGGAGAAAAAGA
80976394 AGGAAGAA
1 A-GAAGAA
80976402 TTCGGCACTC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
23 2 0.07
24 4 0.15
25 15 0.56
26 6 0.22
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.02
Consensus pattern (23 bp):
AGAAGAAAAGAAGGAGAAAAAGA
Found at i:80978956 original size:5 final size:5
Alignment explanation
Indices: 80978939--80978969 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
80978929 ATAGAGTGAC
80978939 TTCTT TT-TT TTCTT TTCTT TTCTT TTCTT TT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TT
80978970 TCTATCTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (5 bp):
TTCTT
Found at i:80980200 original size:18 final size:19
Alignment explanation
Indices: 80980177--80980216 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
80980167 TTTTACTTGG
80980177 ATTTTTAGATT-TTTA-TTA
1 ATTTTTA-ATTATTTATTTA
80980195 ATTTTTAATTATTTATTTA
1 ATTTTTAATTATTTATTTA
80980214 ATT
1 ATT
80980217 ATTGTTGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 3 0.15
18 11 0.55
19 6 0.30
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
ATTTTTAATTATTTATTTA
Found at i:80983299 original size:23 final size:24
Alignment explanation
Indices: 80983273--80983321 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
80983263 AATAGTGATC
* *
80983273 AAGAAATAAG-AGAAAATTGGGAA
1 AAGAAAGAAGAAGAAAATTGAGAA
*
80983296 AAGAAAGAAGAAGAAAGTTGAGAA
1 AAGAAAGAAGAAGAAAATTGAGAA
80983320 AA
1 AA
80983322 ATTTTACTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.63, C:0.00, G:0.27, T:0.10
Consensus pattern (24 bp):
AAGAAAGAAGAAGAAAATTGAGAA
Found at i:80993776 original size:15 final size:15
Alignment explanation
Indices: 80993747--80993786 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
80993737 AAAGATGACA
* *
80993747 AGAAAACCAAGATAG
1 AGAAATCCAAAATAG
*
80993762 AGGAATCCAAAATAG
1 AGAAATCCAAAATAG
80993777 AGAAATCCAA
1 AGAAATCCAA
80993787 GATACGATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.10
Consensus pattern (15 bp):
AGAAATCCAAAATAG
Found at i:80998399 original size:48 final size:49
Alignment explanation
Indices: 80998300--80998573 Score: 177
Period size: 48 Copynumber: 5.8 Consensus size: 49
80998290 TCATTTTTGT
* * *
80998300 GAGCTAGTGTAAGA-CATGCCTGGGACAT-GCATCGGCC--ACAT-TATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGAGATGTA--A
* * *
80998346 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCTTGGGACGT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TGAGATGTAA
* * *
80998395 -AGCCAGTATAAGA-CATGTTTGGGACAT-GCATCAG-CTACGAGATGT--
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT--GAGATGTAA
** * ** *
80998440 --GTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGTTATGTGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTGAGATGTAA
* **
80998488 GAGCTAGTGTAAGACCATGTCTAAGACATGGCATCGGCCTCGA-A-GATAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-GAGATG-TAA
* *
80998537 TAGCCAGTGT-AGACCATGTCTGGGATATGGCATCGGC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
80998574 ACTTTACCCA
Statistics
Matches: 179, Mismatches: 31, Indels: 34
0.73 0.13 0.14
Matches are distributed among these distances:
44 10 0.06
45 14 0.08
46 34 0.19
47 26 0.15
48 46 0.26
49 13 0.07
50 34 0.19
51 1 0.01
52 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGAGATGTAA
Found at i:80999446 original size:31 final size:31
Alignment explanation
Indices: 80999404--80999486 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
80999394 TCAGTCTCGA
*
80999404 CATAT-ACTGGGCCGAAGCCTTTTCATAATT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
80999434 CATATCATTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
80999465 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
80999487 ACTGTAAGCG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 18 0.37
31 31 0.63
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:80999966 original size:27 final size:27
Alignment explanation
Indices: 80999917--81000039 Score: 126
Period size: 27 Copynumber: 4.6 Consensus size: 27
80999907 GAAAGTCAAT
**
80999917 GGTATTTCT-GTAATTTTGTAAATCAGG
1 GGTATTT-TGGTAATTTTACAAATCAGG
*
80999944 GGTATTTTGGTAATTTTACAAAT-TGAG
1 GGTATTTTGGTAATTTTACAAATCAG-G
* * * * *
80999971 GGTATTTCGATAATTTCACAAAGCAGT
1 GGTATTTTGGTAATTTTACAAATCAGG
80999998 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTGGTAATTTTACAAATC-AGG
81000025 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
81000040 CTACCCTATA
Statistics
Matches: 79, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.04
27 75 0.95
28 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAATCAGG
Found at i:80999985 original size:54 final size:54
Alignment explanation
Indices: 80999917--81000019 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
80999907 GAAAGTCAAT
*** *
80999917 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCTGTAATTTCACAAAGCAGGGGTATTTTGGTAATTTTACAAATTGAG
*
80999971 GGTATTTC-GATAATTTCACAAAGCAGTGGTATTTTGGTAATTTTACAAA
1 GGTATTTCTG-TAATTTCACAAAGCAGGGGTATTTTGGTAATTTTACAAA
81000020 CTAGGGGTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.02
54 42 0.98
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (54 bp):
GGTATTTCTGTAATTTCACAAAGCAGGGGTATTTTGGTAATTTTACAAATTGAG
Found at i:81000055 original size:81 final size:81
Alignment explanation
Indices: 80999916--81000072 Score: 194
Period size: 81 Copynumber: 1.9 Consensus size: 81
80999906 TGAAAGTCAA
** * * *
80999916 TGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGA
1 TGGTATTTCTGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTACAAATAGAGGGTATTTCAA
80999981 TAATTTCACAAAGCAG
66 TAATTTCACAAAGCAG
**
80999997 TGGTATTT-TGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTCTACCCTATAG-GGGTATTT
1 TGGTATTTCT-GTAATTTTACAAATC-AGGGGTATTTTGGTAATTCTA-CAAATAGAGGGTATTT
*
81000059 CAATAATTTTACAA
63 CAATAATTTCACAA
81000073 TCGAGGGTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 2 0.03
81 59 0.91
82 4 0.06
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (81 bp):
TGGTATTTCTGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTACAAATAGAGGGTATTTCAA
TAATTTCACAAAGCAG
Found at i:81000105 original size:27 final size:27
Alignment explanation
Indices: 81000071--81000162 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
81000061 ATAATTTTAC
81000071 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTTTGTA
* *
81000098 AATTGAGGGTAAAAGAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTTTGTA
* * * *
81000125 AATCAAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAACAGTAATTTTGTA
81000152 AATCGAGGGTA
1 AATCGAGGGTA
81000163 CTTTGGTAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.43, C:0.07, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTTTGTA
Found at i:81002388 original size:66 final size:66
Alignment explanation
Indices: 81002301--81002433 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
81002291 TATATATACA
*
81002301 AATGAGATTTTGAATGATGAGCTCATCTAAGATAACTTTTATAGTGCATTGTTATATGACTAACT
1 AATGAGATGTTGAATGATGAGCTCATCTAAGATAACTTTTATAGTGCATTGTTATATGACTAACT
81002366 C
66 C
81002367 AATGAGATGTTGAATGATGAGCTCATCTAAGATAACTTTTATAGTGCATTGTTATATGACTAACT
1 AATGAGATGTTGAATGATGAGCTCATCTAAGATAACTTTTATAGTGCATTGTTATATGACTAACT
81002432 C
66 C
81002433 A
1 A
81002434 TTGATTGAGT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (66 bp):
AATGAGATGTTGAATGATGAGCTCATCTAAGATAACTTTTATAGTGCATTGTTATATGACTAACT
C
Found at i:81010019 original size:21 final size:21
Alignment explanation
Indices: 81009990--81010034 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
81009980 CATATAAAGA
* *
81009990 AAAACTTATAATTATTTTTTT
1 AAAACTTATAATGAATTTTTT
* *
81010011 AAAATTTATTATGAATTTTTT
1 AAAACTTATAATGAATTTTTT
81010032 AAA
1 AAA
81010035 GTCAGAACAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (21 bp):
AAAACTTATAATGAATTTTTT
Found at i:81012984 original size:57 final size:58
Alignment explanation
Indices: 81012846--81012991 Score: 163
Period size: 57 Copynumber: 2.5 Consensus size: 58
81012836 CATTATAAAA
* * *
81012846 AGGATTTAGCCTGGACTGGTAATCCTGATATAAGCCTCTCTTGAGCATAAGTTATAGAT
1 AGGATTTAGCCTGGACAGGTAATCCTGAT-TAAGCCTCTCTTGAGCATAAGTTAGAAAT
** * * *
81012905 AGGATTTAGCCTGGATGGGTAATCCTGATTAAG-CT-TTTATGAGCATATGTTGGAAAT
1 AGGATTTAGCCTGGACAGGTAATCCTGATTAAGCCTCTCT-TGAGCATAAGTTAGAAAT
* *
81012962 AGGATTTAGCTTGGACAAGTAATCCT-ATTA
1 AGGATTTAGCCTGGACAGGTAATCCTGATTA
81012992 TATGATATGT
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
56 6 0.08
57 38 0.51
58 4 0.05
59 27 0.36
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (58 bp):
AGGATTTAGCCTGGACAGGTAATCCTGATTAAGCCTCTCTTGAGCATAAGTTAGAAAT
Found at i:81015343 original size:20 final size:20
Alignment explanation
Indices: 81015318--81015362 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
81015308 CCTTAAATTG
* *
81015318 TTTTATGTATAAGATTATTA
1 TTTTATGTATAAAAATATTA
*
81015338 TTTTATTTATAAAAATATTA
1 TTTTATGTATAAAAATATTA
81015358 TTTTA
1 TTTTA
81015363 ATTAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (20 bp):
TTTTATGTATAAAAATATTA
Found at i:81015449 original size:20 final size:20
Alignment explanation
Indices: 81015410--81015451 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
81015400 TATTTATAAA
*
81015410 TATTTTTATAATTTTGTATG
1 TATTTTTATAAATTTGTATG
81015430 TATTTTTATAAAATTT-TATG
1 TATTTTTAT-AAATTTGTATG
81015450 TA
1 TA
81015452 AATTTATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (20 bp):
TATTTTTATAAATTTGTATG
Found at i:81015492 original size:12 final size:12
Alignment explanation
Indices: 81015473--81015503 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
81015463 AAAAATAAAC
81015473 TTTT-AAATTTT
1 TTTTAAAATTTT
81015484 TTTTAAAATTTT
1 TTTTAAAATTTT
81015496 TTTTAAAA
1 TTTTAAAA
81015504 ATTTAAGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTTTAAAATTTT
Found at i:81015498 original size:13 final size:13
Alignment explanation
Indices: 81015477--81015507 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
81015467 ATAAACTTTT
81015477 AAATTTTTTTT-A
1 AAATTTTTTTTAA
81015489 AAATTTTTTTTAA
1 AAATTTTTTTTAA
81015502 AAATTT
1 AAATTT
81015508 AAGAATCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
AAATTTTTTTTAA
Found at i:81017436 original size:46 final size:46
Alignment explanation
Indices: 81017380--81017472 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
81017370 AGAGAAGGAG
81017380 AAAAAAATTTTTAATTGGTGCAGACGGTATAAACGGAGAAAGCCAT
1 AAAAAAATTTTTAATTGGTGCAGACGGTATAAACGGAGAAAGCCAT
81017426 AAAAAAATTTTTAATTGGTGCAGACGGTATAAACGGAGAAAGCCAT
1 AAAAAAATTTTTAATTGGTGCAGACGGTATAAACGGAGAAAGCCAT
81017472 A
1 A
81017473 CAACAATAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.24
Consensus pattern (46 bp):
AAAAAAATTTTTAATTGGTGCAGACGGTATAAACGGAGAAAGCCAT
Found at i:81022351 original size:21 final size:21
Alignment explanation
Indices: 81022325--81022374 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
81022315 AGGGGTTTGT
*
81022325 TCAAAATAAGTATAACCTAAC
1 TCAAAATAAGTATAACCGAAC
81022346 TCAAAATAAGTATAACCGAAC
1 TCAAAATAAGTATAACCGAAC
81022367 TCAAAATA
1 TCAAAATA
81022375 TAAAATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.54, C:0.18, G:0.06, T:0.22
Consensus pattern (21 bp):
TCAAAATAAGTATAACCGAAC
Found at i:81027003 original size:27 final size:27
Alignment explanation
Indices: 81026968--81027020 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
81026958 AAAATTACAA
* *
81026968 AAAAAATTTAAATAATTTTTAAAATTC
1 AAAAAATTTAAATAAATTCTAAAATTC
* *
81026995 AAAATATTTATATAAATTCTAAAATT
1 AAAAAATTTAAATAAATTCTAAAATT
81027021 TATATATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (27 bp):
AAAAAATTTAAATAAATTCTAAAATTC
Found at i:81027010 original size:20 final size:19
Alignment explanation
Indices: 81026970--81027026 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 19
81026960 AATTACAAAA
*
81026970 AAAATTTAAATAATTT-T-T
1 AAAATTCAAA-AATTTATAT
81026988 AAAATTCAAAATATTTATAT
1 AAAATTCAAAA-ATTTATAT
*
81027008 -AAATTCTAAAATTTATAT
1 AAAATTCAAAAATTTATAT
81027026 A
1 A
81027027 TTTTTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 1 0.03
18 21 0.64
19 10 0.30
20 1 0.03
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (19 bp):
AAAATTCAAAAATTTATAT
Found at i:81027027 original size:20 final size:19
Alignment explanation
Indices: 81026989--81027026 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
81026979 ATAATTTTTA
81026989 AAATTCAAAATATTTATAT
1 AAATTCAAAATATTTATAT
*
81027008 AAATTCTAAA-ATTTATAT
1 AAATTCAAAATATTTATAT
81027026 A
1 A
81027027 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
AAATTCAAAATATTTATAT
Found at i:81027076 original size:20 final size:20
Alignment explanation
Indices: 81027053--81027093 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
81027043 AATTTATTTT
81027053 TAAA-AAAATTAGAGAATATA
1 TAAATAAAATTA-AGAATATA
*
81027073 TAAATAAAGTTAAGAATATA
1 TAAATAAAATTAAGAATATA
81027093 T
1 T
81027094 TTTATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (20 bp):
TAAATAAAATTAAGAATATA
Found at i:81029559 original size:14 final size:15
Alignment explanation
Indices: 81029527--81029559 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
81029517 CATTTTTTAT
*
81029527 TTTTAACTTTAAGTC
1 TTTTAACTTTAACTC
81029542 TTTTAACTTT-ACTC
1 TTTTAACTTTAACTC
81029556 TTTT
1 TTTT
81029560 TTTTTCCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.21, C:0.15, G:0.03, T:0.61
Consensus pattern (15 bp):
TTTTAACTTTAACTC
Found at i:81029669 original size:14 final size:14
Alignment explanation
Indices: 81029650--81029682 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
81029640 CACCTCACCA
*
81029650 CCACCTCCGCCGAT
1 CCACCTCCACCGAT
81029664 CCACCTCCACCGAT
1 CCACCTCCACCGAT
81029678 CCACC
1 CCACC
81029683 CAAATCCCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.61, G:0.09, T:0.12
Consensus pattern (14 bp):
CCACCTCCACCGAT
Found at i:81031169 original size:11 final size:11
Alignment explanation
Indices: 81031125--81031172 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
81031115 GCTTTCTCCC
*
81031125 TATTTTGCTAC
1 TATTTTGCTAT
*
81031136 TATTTTACTAT
1 TATTTTGCTAT
*
81031147 TATGTTGCTAT
1 TATTTTGCTAT
*
81031158 TATTTTGTTAT
1 TATTTTGCTAT
81031169 TATT
1 TATT
81031173 CTTTGCATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.21, C:0.08, G:0.08, T:0.62
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:81031235 original size:30 final size:30
Alignment explanation
Indices: 81031201--81031262 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
81031191 ACTTATTTTA
81031201 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
* *
81031231 TTGTTAATTTTGTTATTATTTTAGAGGTAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
81031261 TT
1 TT
81031263 ACTTGTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.02, G:0.15, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:81031383 original size:20 final size:18
Alignment explanation
Indices: 81031345--81031384 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
81031335 GAAATATTTA
*
81031345 TTTTGATGTTTTTAATAT
1 TTTTGATGTTTTAAATAT
81031363 TTTTGATGTATTATAAATAT
1 TTTTGATGT-TT-TAAATAT
81031383 TT
1 TT
81031385 AAAAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 2 0.11
20 8 0.42
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (18 bp):
TTTTGATGTTTTAAATAT
Found at i:81032148 original size:20 final size:20
Alignment explanation
Indices: 81032119--81032157 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81032109 AAAAATTATA
81032119 AAAAAATCAAAATATTTTTC
1 AAAAAATCAAAATATTTTTC
* *
81032139 AAAAATTCAAAGTATTTTT
1 AAAAAATCAAAATATTTTT
81032158 TATTATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (20 bp):
AAAAAATCAAAATATTTTTC
Found at i:81032922 original size:19 final size:19
Alignment explanation
Indices: 81032900--81032938 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
81032890 GAAAAAACTC
**
81032900 AAAATTATTTAAAAATAAA
1 AAAATTATAGAAAAATAAA
*
81032919 AAAATTCTAGAAAAATAAA
1 AAAATTATAGAAAAATAAA
81032938 A
1 A
81032939 TCTTGAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (19 bp):
AAAATTATAGAAAAATAAA
Found at i:81039795 original size:15 final size:15
Alignment explanation
Indices: 81039775--81039804 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81039765 CATGTGTAAG
81039775 ACCATAGTTAGACTA
1 ACCATAGTTAGACTA
*
81039790 ACCATAGTTGGACTA
1 ACCATAGTTAGACTA
81039805 TGACATCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (15 bp):
ACCATAGTTAGACTA
Found at i:81039872 original size:45 final size:45
Alignment explanation
Indices: 81039823--81039979 Score: 217
Period size: 45 Copynumber: 3.5 Consensus size: 45
81039813 AACCAGAAAC
81039823 GAGTAAGACCATAGCTGAAAGACGCTATGACATCGCGATTCAGAT
1 GAGTAAGACCATAGCTGAAAGACGCTATGACATCGCGATTCAGAT
* *
81039868 GAGTAAGGCCATAGCTAAAAGACGCTATGACATCGCGATTCAGAT
1 GAGTAAGACCATAGCTGAAAGACGCTATGACATCGCGATTCAGAT
** * ** *
81039913 GAGTAAGACCATAGCTGAAAGACATTATGGCATCATGATTCTGAT
1 GAGTAAGACCATAGCTGAAAGACGCTATGACATCGCGATTCAGAT
*
81039958 -ATGTAAGACCATAGTTGAAAGA
1 GA-GTAAGACCATAGCTGAAAGA
81039980 TAATATGGCA
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
44 1 0.01
45 99 0.99
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (45 bp):
GAGTAAGACCATAGCTGAAAGACGCTATGACATCGCGATTCAGAT
Found at i:81040040 original size:24 final size:24
Alignment explanation
Indices: 81040013--81040086 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 24
81040003 TGAATAAGAC
81040013 CATGGTTGAAAGATACCATGGCAA
1 CATGGTTGAAAGATACCATGGCAA
*** *
81040037 CATGACAGAAA-ATGA--ATAAG-AA
1 CATGGTTGAAAGAT-ACCAT-GGCAA
*
81040059 CATGGTTGAAAGATACCCTGGCAA
1 CATGGTTGAAAGATACCATGGCAA
81040083 CATG
1 CATG
81040087 ACAGGAAATG
Statistics
Matches: 35, Mismatches: 9, Indels: 12
0.62 0.16 0.21
Matches are distributed among these distances:
22 13 0.37
23 6 0.17
24 16 0.46
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (24 bp):
CATGGTTGAAAGATACCATGGCAA
Found at i:81040173 original size:46 final size:46
Alignment explanation
Indices: 81039961--81040153 Score: 262
Period size: 46 Copynumber: 4.2 Consensus size: 46
81039951 TTCTGATATG
* ** *
81039961 TAAGACCATAGTTGAAAGATAATATGGCAATATGAC-GAGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA-AAATGAA
81040007 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAA
* * *
81040053 TAAGAACATGGTTGAAAGATACCCTGGCAACATGACAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAA
* * * * *
81040099 TAAGATCATGGTTTAAAGTTACCCTGGCAACATGACAGAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAA
81040145 TAAGACCAT
1 TAAGACCAT
81040154 AATTGAAAAA
Statistics
Matches: 133, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 131 0.98
47 2 0.02
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAA
Found at i:81040173 original size:92 final size:92
Alignment explanation
Indices: 81039960--81040195 Score: 287
Period size: 92 Copynumber: 2.6 Consensus size: 92
81039950 ATTCTGATAT
* *
81039960 GTAAGACCATAGTTGAAAGATAATATGGCAATATGACGAGAAATGAATAAGACCATGGTTGAAAG
1 GTAAGACCATAGTTGAAAGATACTATGGCAACATGACGAGAAATGAATAAGACCATGGTTGAAAG
81040025 ATACCATGGCAACATGACAGAAAATGA
66 ATACCATGGCAACATGACAGAAAATGA
* * * ** * *
81040052 ATAAGAACATGGTTGAAAGATACCCTGGCAACATGAC-AGGAAATGAATAAGATCATGGTTTAAA
1 GTAAGACCATAGTTGAAAGATACTATGGCAACATGACGA-GAAATGAATAAGACCATGGTTGAAA
* *
81040116 GTTACCCTGGCAACATGACAGAAAATGA
65 GATACCATGGCAACATGACAGAAAATGA
* * * * * * *
81040144 GTAAGACCATAATTGAAAAACACTATGGCATCATGTCGA-AGATAAATAAGAC
1 GTAAGACCATAGTTGAAAGATACTATGGCAACATGACGAGAAATGAATAAGAC
81040196 TGTGGATGGG
Statistics
Matches: 118, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
91 11 0.09
92 106 0.90
93 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.20
Consensus pattern (92 bp):
GTAAGACCATAGTTGAAAGATACTATGGCAACATGACGAGAAATGAATAAGACCATGGTTGAAAG
ATACCATGGCAACATGACAGAAAATGA
Found at i:81047467 original size:107 final size:102
Alignment explanation
Indices: 81047284--81047483 Score: 265
Period size: 107 Copynumber: 1.9 Consensus size: 102
81047274 ATTGACGGAC
* * ** *
81047284 AAGACCATGGTTAGACCATGACAAAGTGTTAAATGTAAGACCATAGCTGGGCTATGACATTTTAG
1 AAGACCATGGTTAGACCATGACAAAGTGATAAATGTAAGACCATAGCAGGGCTATGACATCCTAA
* *
81047349 TGAAAATACCATAACTGGGTTATTGCACCGTGAACGT
66 TGAAAAGACCATAACTGGGTTATGGCACCGTGAACGT
* *
81047386 AAGACCATGGTTAGACCATGACAGTATATGTGAATACATGTAAGACCATAGCAGGGCTATGGCAT
1 AAGACCATGGTTAGACCATGACA--A-A-GTG-ATAAATGTAAGACCATAGCAGGGCTATGACAT
*
81047451 CCTAATGATAAGACCATAACTGGGTTATGGCAC
61 CCTAATGAAAAGACCATAACTGGGTTATGGCAC
81047484 TAAAAATGTA
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
102 23 0.28
104 1 0.01
105 1 0.01
106 3 0.04
107 55 0.66
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.25
Consensus pattern (102 bp):
AAGACCATGGTTAGACCATGACAAAGTGATAAATGTAAGACCATAGCAGGGCTATGACATCCTAA
TGAAAAGACCATAACTGGGTTATGGCACCGTGAACGT
Found at i:81047496 original size:33 final size:32
Alignment explanation
Indices: 81047423--81047500 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 32
81047413 ATGTGAATAC
* ***
81047423 ATGTAAGACCATAGCAGGGCTATGGCATCCTA
1 ATGTAAGACCATAACAGGGCTATGGCATAAAA
* *
81047455 ATGATAAGACCATAACTGGGTTATGGCACTAAAA
1 ATG-TAAGACCATAACAGGGCTATGGCA-TAAAA
81047489 ATGTAAGACCAT
1 ATGTAAGACCAT
81047501 GGCAAGGCCA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
32 3 0.08
33 30 0.79
34 5 0.13
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (32 bp):
ATGTAAGACCATAACAGGGCTATGGCATAAAA
Found at i:81047512 original size:107 final size:107
Alignment explanation
Indices: 81047316--81047512 Score: 250
Period size: 107 Copynumber: 1.8 Consensus size: 107
81047306 AAAGTGTTAA
* ** * * * ***
81047316 ATGTAAGACCATAGCTGGGCTATGACATTTTAGTGAAAATACCATAACTGGGTTATTGCACCGTG
1 ATGTAAGACCATAGCAGGGCTATGACATCCTAATGAAAAGACCATAACTGGGTTATGGCACCAAA
**
81047381 AACGTAAGACCATGGTTAGACCATGACAGTATATGTGAATAC
66 AACGTAAGACCATGGCAAGACCATGACAGTATATGTGAATAC
* * *
81047423 ATGTAAGACCATAGCAGGGCTATGGCATCCTAATGATAAGACCATAACTGGGTTATGGCACTAAA
1 ATGTAAGACCATAGCAGGGCTATGACATCCTAATGAAAAGACCATAACTGGGTTATGGCACCAAA
* *
81047488 AATGTAAGACCATGGCAAGGCCATG
66 AACGTAAGACCATGGCAAGACCATG
81047513 GCAATGCATG
Statistics
Matches: 74, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
107 74 1.00
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (107 bp):
ATGTAAGACCATAGCAGGGCTATGACATCCTAATGAAAAGACCATAACTGGGTTATGGCACCAAA
AACGTAAGACCATGGCAAGACCATGACAGTATATGTGAATAC
Found at i:81049665 original size:13 final size:14
Alignment explanation
Indices: 81049647--81049676 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81049637 CATGAAAAAT
81049647 AAAAAG-AAGAAAG
1 AAAAAGAAAGAAAG
81049660 AAAAAGAAAGAAAG
1 AAAAAGAAAGAAAG
81049674 AAA
1 AAA
81049677 GAAGGGTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAGAAAG
Found at i:81054905 original size:43 final size:43
Alignment explanation
Indices: 81054857--81055027 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
81054847 GTTACTGAAA
81054857 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
* * *
81054900 TGTGATTACGTGTAAGACCATGTAT-AGGATATTGGCATTGTTAT
1 TGTGATTACATGTAAGACCATGTCTGA-GACATTGGCATTG-TAT
* * * * * * * *
81054944 T-TTATTTCGTGTAAGACCTTGTTTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
* * * *
81054985 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 -TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
81055028 GAGTTATATG
Statistics
Matches: 102, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.02
42 9 0.09
43 87 0.85
44 4 0.04
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
Found at i:81055016 original size:86 final size:85
Alignment explanation
Indices: 81054867--81055025 Score: 203
Period size: 86 Copynumber: 1.9 Consensus size: 85
81054857 TGTGATTACA
* * * * *
81054867 TGTAAGACCATGTCTGAGACATTGGCATTGTATTGTGATTACGTGTAAGACCATGTATAGGATAT
1 TGTAAGACCATGTCTGAGACAGTGGCATCGTATTGTGATAACATGTAAGACCATATATAGGATA-
81054932 TGGCATTGTTATTTTATTTCG
65 TGGCATTGTTATTTTATTTCG
* * * * *
81054953 TGTAAGACCTTGTTTGGGACAGTGGCATCG-ATATGTGATAACATGTAAGACCATATCTGGGATA
1 TGTAAGACCATGTCTGAGACAGTGGCATCGTAT-TGTGATAACATGTAAGACCATATATAGGATA
81055017 TGGCATTGT
65 TGGCATTGT
81055026 ATGAGTTATA
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
85 11 0.18
86 51 0.82
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (85 bp):
TGTAAGACCATGTCTGAGACAGTGGCATCGTATTGTGATAACATGTAAGACCATATATAGGATAT
GGCATTGTTATTTTATTTCG
Found at i:81061504 original size:43 final size:43
Alignment explanation
Indices: 81061455--81061613 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
81061445 GGTTACTAAG
81061455 ATGTGATTACATGTAAGACCATGTCTGGGACATTGACA-CTG-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGACATC-GAT
* * * * *
81061497 ACTGTGATCACGTGTAAGACCATGTCTAGGATATTGACATCGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGAT
* * * * * *
81061541 ATTTGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGAT
* * *
81061584 ATGTGATAACATGTAAAACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
81061614 TATGGCATTG
Statistics
Matches: 94, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
42 1 0.01
43 90 0.96
44 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGAT
Found at i:81063151 original size:12 final size:12
Alignment explanation
Indices: 81063134--81063158 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81063124 TTGTAAGGCC
81063134 TTGTAACCCTAT
1 TTGTAACCCTAT
81063146 TTGTAACCCTAT
1 TTGTAACCCTAT
81063158 T
1 T
81063159 CTGGCGACGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.44
Consensus pattern (12 bp):
TTGTAACCCTAT
Found at i:81063587 original size:21 final size:21
Alignment explanation
Indices: 81063562--81063601 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
81063552 TTGAACTTAG
81063562 TGAGTTTTTGCATAATGACAA
1 TGAGTTTTTGCATAATGACAA
81063583 TGAGTTTTTGCATAATGAC
1 TGAGTTTTTGCATAATGAC
81063602 CCTATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (21 bp):
TGAGTTTTTGCATAATGACAA
Found at i:81068092 original size:19 final size:19
Alignment explanation
Indices: 81068067--81068157 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
81068057 ATAATCTTCA
81068067 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
81068086 GTGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
81068105 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
81068122 ATGAT-TGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
*
81068140 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
81068158 AGATATGATT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
17 15 0.24
18 15 0.24
19 32 0.52
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:81068107 original size:14 final size:16
Alignment explanation
Indices: 81068076--81068145 Score: 59
Period size: 17 Copynumber: 4.0 Consensus size: 16
81068066 AATGATATGC
*
81068076 AATCTTAGATGTGATA
1 AATCTTAGATATGATA
81068092 TGTAATCTTAGATATGATA
1 ---AATCTTAGATATGATA
*
81068111 CAATCTTAGATATGATTGC
1 -AATCTTAGATATGA-T-A
*
81068130 AATATTAGATATGATA
1 AATCTTAGATATGATA
81068146 TACAATCTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
17 15 0.34
18 14 0.32
19 15 0.34
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.39
Consensus pattern (16 bp):
AATCTTAGATATGATA
Found at i:81070276 original size:79 final size:79
Alignment explanation
Indices: 81070145--81070302 Score: 271
Period size: 79 Copynumber: 2.0 Consensus size: 79
81070135 GATGTTGTAC
* * * *
81070145 TTATCAGAAATAATGGAAATGCAAGATCTGATGACCGGGACAACCCAAATGAGCATGAAAGAAAG
1 TTATCAAAAATAATGGAAATGCAAGACCTGATGACCGAGACAACCCAAATGAGCATGAAAGAAAA
81070210 AGATTAAAGAAGAT
66 AGATTAAAGAAGAT
*
81070224 TTATCAAAAATAATGGAAATGCAAGCCCTGATGACCGAGACAACCCAAATGAGCATGAAAGAAAA
1 TTATCAAAAATAATGGAAATGCAAGACCTGATGACCGAGACAACCCAAATGAGCATGAAAGAAAA
81070289 AGATTAAAGAAGAT
66 AGATTAAAGAAGAT
81070303 CGTATCGTTT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 74 1.00
ACGTcount: A:0.48, C:0.14, G:0.21, T:0.17
Consensus pattern (79 bp):
TTATCAAAAATAATGGAAATGCAAGACCTGATGACCGAGACAACCCAAATGAGCATGAAAGAAAA
AGATTAAAGAAGAT
Found at i:81073600 original size:8 final size:8
Alignment explanation
Indices: 81073551--81073600 Score: 52
Period size: 7 Copynumber: 6.5 Consensus size: 8
81073541 GCAAAAAAGT
81073551 AAAAGAAA
1 AAAAGAAA
*
81073559 AAAA-TAA
1 AAAAGAAA
*
81073566 AAAA-ATA
1 AAAAGAAA
81073573 AAAAG-AA
1 AAAAGAAA
81073580 AAAAGAGAA
1 AAAAGA-AA
81073589 AAAAGAAA
1 AAAAGAAA
81073597 AAAA
1 AAAA
81073601 AATGGAGAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
7 17 0.49
8 10 0.29
9 8 0.23
ACGTcount: A:0.86, C:0.00, G:0.10, T:0.04
Consensus pattern (8 bp):
AAAAGAAA
Found at i:81073608 original size:21 final size:22
Alignment explanation
Indices: 81073534--81073602 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
81073524 CTATTTCAAA
*
81073534 AAAAAAG-GCAAAAAAGTAAAAG
1 AAAAAAGAG-AAAAAAGAAAAAG
* *
81073556 AAAAAA-ATAAAAAAATAAAAAG
1 AAAAAAGA-GAAAAAAGAAAAAG
81073578 AAAAAAGAGAAAAAAGAAAAA-
1 AAAAAAGAGAAAAAAGAAAAAG
81073599 AAAA
1 AAAA
81073603 TGGAGAGGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
21 4 0.10
22 34 0.87
23 1 0.03
ACGTcount: A:0.83, C:0.01, G:0.12, T:0.04
Consensus pattern (22 bp):
AAAAAAGAGAAAAAAGAAAAAG
Found at i:81073706 original size:123 final size:123
Alignment explanation
Indices: 81073487--81073759 Score: 537
Period size: 123 Copynumber: 2.2 Consensus size: 123
81073477 GAGAAGGGAA
81073487 GCCAAGGTGAAAACCCACAAAGGGCACTTTGGGACTTCTATTTCAAAAAAAAAGGCAAAAAAGTA
1 GCCAAGGTGAAAACCCACAAAGGGCACTTTGGGACTTCTATTTCAAAAAAAAAGGCAAAAAAGTA
81073552 AAAGAAAAAAATAAAAAAATAAAAAGAAAAAAGAGAAAAAAGAAAAAAAAATGGAGAG
66 AAAGAAAAAAATAAAAAAATAAAAAGAAAAAAGAGAAAAAAGAAAAAAAAATGGAGAG
81073610 GCCAAGGTGAAAACCCACAAAGGGCACTTTGGGACTTCTATTTCAAAAAAAAAGGCAAAAAAGTA
1 GCCAAGGTGAAAACCCACAAAGGGCACTTTGGGACTTCTATTTCAAAAAAAAAGGCAAAAAAGTA
81073675 AAAGAAAAAAATAAAAAAATAAAAAGAAAAAAGAGAAAAAAGAAAAAAAAATGGAGAG
66 AAAGAAAAAAATAAAAAAATAAAAAGAAAAAAGAGAAAAAAGAAAAAAAAATGGAGAG
*
81073733 GCCAAGGTGAAAACCCGCAAAGGGCAC
1 GCCAAGGTGAAAACCCACAAAGGGCAC
81073760 CTTGAGACCA
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 149 1.00
ACGTcount: A:0.59, C:0.12, G:0.19, T:0.11
Consensus pattern (123 bp):
GCCAAGGTGAAAACCCACAAAGGGCACTTTGGGACTTCTATTTCAAAAAAAAAGGCAAAAAAGTA
AAAGAAAAAAATAAAAAAATAAAAAGAAAAAAGAGAAAAAAGAAAAAAAAATGGAGAG
Found at i:81073723 original size:8 final size:8
Alignment explanation
Indices: 81073674--81073723 Score: 52
Period size: 7 Copynumber: 6.5 Consensus size: 8
81073664 GCAAAAAAGT
81073674 AAAAGAAA
1 AAAAGAAA
*
81073682 AAAA-TAA
1 AAAAGAAA
*
81073689 AAAA-ATA
1 AAAAGAAA
81073696 AAAAG-AA
1 AAAAGAAA
81073703 AAAAGAGAA
1 AAAAGA-AA
81073712 AAAAGAAA
1 AAAAGAAA
81073720 AAAA
1 AAAA
81073724 AATGGAGAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
7 17 0.49
8 10 0.29
9 8 0.23
ACGTcount: A:0.86, C:0.00, G:0.10, T:0.04
Consensus pattern (8 bp):
AAAAGAAA
Found at i:81073731 original size:21 final size:22
Alignment explanation
Indices: 81073657--81073725 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
81073647 CTATTTCAAA
*
81073657 AAAAAAG-GCAAAAAAGTAAAAG
1 AAAAAAGAG-AAAAAAGAAAAAG
* *
81073679 AAAAAA-ATAAAAAAATAAAAAG
1 AAAAAAGA-GAAAAAAGAAAAAG
81073701 AAAAAAGAGAAAAAAGAAAAA-
1 AAAAAAGAGAAAAAAGAAAAAG
81073722 AAAA
1 AAAA
81073726 TGGAGAGGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
21 4 0.10
22 34 0.87
23 1 0.03
ACGTcount: A:0.83, C:0.01, G:0.12, T:0.04
Consensus pattern (22 bp):
AAAAAAGAGAAAAAAGAAAAAG
Found at i:81075272 original size:207 final size:207
Alignment explanation
Indices: 81074915--81075632 Score: 1240
Period size: 207 Copynumber: 3.5 Consensus size: 207
81074905 CGACGGAGAG
* * *
81074915 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* * *
81074980 GCATCTCTGTATTGTTAGAGAACAAATCGAAGTTTGGCGTCTCCATATTTGACGGAAGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
81075045 CATAGCAGATCTGGCCTTCAGATGTTTATATTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGACCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
81075110 GCTTACAAGGAA
196 GCTTACAAGGAA
81075122 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
81075187 GCATCTCTGTATTGTCAGAGAAAAAATCGAAGTTAGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
81075252 CATAGCAGATCTGACCTTCAGATGTTTATACTGAAGCAAGATCCAAGATAGTTTGGCATCCTTGT
131 CATAGCAGATCTGACCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
81075317 TCTTACAAGGAA
196 GCTTACAAGGAA
*
81075329 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTTTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
81075394 ACATCTCTGTATTGTCCGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
81075459 CATAGCAGATCT-AGCCTTCAGATGTTTATACTGGAGCAAGATCCAAGATGGTTTGGCATCCTTG
131 CATAGCAGATCTGA-CCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTG
*
81075523 TGCTCACAAGGAA
195 TGCTTACAAGGAA
*
81075536 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGTAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
81075601 GCATCTCTGTATTGTCAAAGAACAAATTGAAG
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAG
81075633 AAGCAGATTT
Statistics
Matches: 483, Mismatches: 27, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
206 1 0.00
207 482 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
CATAGCAGATCTGACCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAA
Found at i:81077579 original size:27 final size:27
Alignment explanation
Indices: 81077544--81077720 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
81077534 ACAACTAAGA
81077544 AATAACCTTTGTGGCATACTCTGAAAG
1 AATAACCTTTGTGGCATACTCTGAAAG
* * ** *
81077571 AATAGCCTTTATGGTGTTCTCTGAAAG
1 AATAACCTTTGTGGCATACTCTGAAAG
* ** *
81077598 AACAACCTTTGTGGTGTACTATGAAAG
1 AATAACCTTTGTGGCATACTCTGAAAG
* * *
81077625 AATAATCTTTGTGGCGTACTATGAAAG
1 AATAACCTTTGTGGCATACTCTGAAAG
* * *
81077652 AATAACTTTTATGGCATACTCTAAAAG
1 AATAACCTTTGTGGCATACTCTGAAAG
*
81077679 AATGAA-ATTTGTGGCATACTCT-ATAAG
1 AAT-AACCTTTGTGGCATACTCTGA-AAG
*
81077706 AATAGCCTTTGTGGC
1 AATAACCTTTGTGGC
81077721 GTGTTCTAAT
Statistics
Matches: 124, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.02
27 120 0.97
28 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (27 bp):
AATAACCTTTGTGGCATACTCTGAAAG
Found at i:81077690 original size:81 final size:81
Alignment explanation
Indices: 81077544--81077720 Score: 187
Period size: 81 Copynumber: 2.2 Consensus size: 81
81077534 ACAACTAAGA
* * ** * * *
81077544 AATAACCTTTGTGGCATACTCTGAAAGAATAGCCTTTATGGTGTTCTCTGAAAGAACAACCTTTG
1 AATAACCTTTGTGGCATACTATGAAAGAATAACCTTTATGGCATACTCTAAAAGAACAACATTTG
81077609 TGGTGTACTATGAAAG
66 TGGTGTACTATGAAAG
* * * *
81077625 AATAATCTTTGTGGCGTACTATGAAAGAATAACTTTTATGGCATACTCTAAAAGAATGAA-ATTT
1 AATAACCTTTGTGGCATACTATGAAAGAATAACCTTTATGGCATACTCTAAAAGAA-CAACATTT
** *
81077689 GTGGCATACTCT-ATAAG
65 GTGGTGTACTATGA-AAG
*
81077706 AATAGCCTTTGTGGC
1 AATAACCTTTGTGGC
81077721 GTGTTCTAAT
Statistics
Matches: 78, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 1 0.01
81 75 0.96
82 2 0.03
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (81 bp):
AATAACCTTTGTGGCATACTATGAAAGAATAACCTTTATGGCATACTCTAAAAGAACAACATTTG
TGGTGTACTATGAAAG
Found at i:81078721 original size:13 final size:12
Alignment explanation
Indices: 81078691--81078724 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
81078681 AAAGATAAAA
81078691 TATCATCTTTTT
1 TATCATCTTTTT
*
81078703 TGTCATCTTTTT
1 TATCATCTTTTT
81078715 TCATCATCTT
1 T-ATCATCTT
81078725 CCCCAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.15, C:0.21, G:0.03, T:0.62
Consensus pattern (12 bp):
TATCATCTTTTT
Found at i:81079892 original size:25 final size:25
Alignment explanation
Indices: 81079775--81079916 Score: 123
Period size: 24 Copynumber: 5.8 Consensus size: 25
81079765 AAGCTATTCG
*
81079775 GAGCTTCCTGTTA-ATGGCTC-TTT
1 GAGCTTCCTGTTATATGGCTCGTAT
* *
81079798 AGAGCTACCTGATAT-TGGCTCGTAT
1 -GAGCTTCCTGTTATATGGCTCGTAT
*
81079823 GAGCTTCCTGATT-TA-GGCTCTTAT
1 GAGCTTCCTG-TTATATGGCTCGTAT
* ** *
81079847 GAGCTTCTTGTTATAAAGCTCGGAT
1 GAGCTTCCTGTTATATGGCTCGTAT
* **
81079872 AAGCTTCCTGTTATATGGCTCACAT
1 GAGCTTCCTGTTATATGGCTCGTAT
*
81079897 GAGCTTCCCGTTATATGGCT
1 GAGCTTCCTGTTATATGGCT
81079917 TGAAAGAGTG
Statistics
Matches: 94, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
23 2 0.02
24 46 0.49
25 46 0.49
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (25 bp):
GAGCTTCCTGTTATATGGCTCGTAT
Found at i:81079910 original size:50 final size:49
Alignment explanation
Indices: 81079815--81079911 Score: 115
Period size: 50 Copynumber: 2.0 Consensus size: 49
81079805 CCTGATATTG
* * ** **
81079815 GCTCGTATGAGCTTCCTGATTTAGGCTCTTATGAGCTTCTTGTTATAAA
1 GCTCGGATAAGCTTCCTGATTTAGGCTCACATGAGCTTCCCGTTATAAA
81079864 GCTCGGATAAGCTTCCTG-TTATATGGCTCACATGAGCTTCCCGTTATA
1 GCTCGGATAAGCTTCCTGATT-TA-GGCTCACATGAGCTTCCCGTTATA
81079912 TGGCTTGAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
48 2 0.05
49 18 0.45
50 20 0.50
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (49 bp):
GCTCGGATAAGCTTCCTGATTTAGGCTCACATGAGCTTCCCGTTATAAA
Found at i:81082612 original size:219 final size:219
Alignment explanation
Indices: 81082233--81082671 Score: 878
Period size: 219 Copynumber: 2.0 Consensus size: 219
81082223 CGATCATTCA
81082233 AGGAACACCCGTTCGGGCTAGATTCCTTTCCATATTTGAGATCACAGATTACCCGTTTGGGCTAA
1 AGGAACACCCGTTCGGGCTAGATTCCTTTCCATATTTGAGATCACAGATTACCCGTTTGGGCTAA
81082298 ATTCTTACTGCAACACATGCAGGATCTCAATTCACATGTAAAACATGGTTTATCCATCGAATTCC
66 ATTCTTACTGCAACACATGCAGGATCTCAATTCACATGTAAAACATGGTTTATCCATCGAATTCC
81082363 CTTTTTAACCTCAACCGAGATAGTTATCAACAAGTCATTACCAAATGAGCATTTCATGCATTTTC
131 CTTTTTAACCTCAACCGAGATAGTTATCAACAAGTCATTACCAAATGAGCATTTCATGCATTTTC
81082428 ATACCATCGATAAATGCAAATATT
196 ATACCATCGATAAATGCAAATATT
81082452 AGGAACACCCGTTCGGGCTAGATTCCTTTCCATATTTGAGATCACAGATTACCCGTTTGGGCTAA
1 AGGAACACCCGTTCGGGCTAGATTCCTTTCCATATTTGAGATCACAGATTACCCGTTTGGGCTAA
81082517 ATTCTTACTGCAACACATGCAGGATCTCAATTCACATGTAAAACATGGTTTATCCATCGAATTCC
66 ATTCTTACTGCAACACATGCAGGATCTCAATTCACATGTAAAACATGGTTTATCCATCGAATTCC
81082582 CTTTTTAACCTCAACCGAGATAGTTATCAACAAGTCATTACCAAATGAGCATTTCATGCATTTTC
131 CTTTTTAACCTCAACCGAGATAGTTATCAACAAGTCATTACCAAATGAGCATTTCATGCATTTTC
81082647 ATACCATCGATAAATGCAAATATT
196 ATACCATCGATAAATGCAAATATT
81082671 A
1 A
81082672 TGCATTCATA
Statistics
Matches: 220, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
219 220 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (219 bp):
AGGAACACCCGTTCGGGCTAGATTCCTTTCCATATTTGAGATCACAGATTACCCGTTTGGGCTAA
ATTCTTACTGCAACACATGCAGGATCTCAATTCACATGTAAAACATGGTTTATCCATCGAATTCC
CTTTTTAACCTCAACCGAGATAGTTATCAACAAGTCATTACCAAATGAGCATTTCATGCATTTTC
ATACCATCGATAAATGCAAATATT
Found at i:81089016 original size:20 final size:20
Alignment explanation
Indices: 81088991--81089039 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
81088981 AAATATTACT
81088991 TTAAAT-ATAAAATATTCAAA
1 TTAAATCAT-AAATATTCAAA
* *
81089011 TTAAATCATCATTATTCAAA
1 TTAAATCATAAATATTCAAA
81089031 TTAAATCAT
1 TTAAATCAT
81089040 CATTCATAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (20 bp):
TTAAATCATAAATATTCAAA
Found at i:81089040 original size:20 final size:20
Alignment explanation
Indices: 81089003--81089043 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
81088993 AAATATAAAA
81089003 TATTCAAATTAAATCATCAT
1 TATTCAAATTAAATCATCAT
81089023 TATTCAAATTAAATCATCAT
1 TATTCAAATTAAATCATCAT
81089043 T
1 T
81089044 CATAGCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (20 bp):
TATTCAAATTAAATCATCAT
Found at i:81091951 original size:40 final size:39
Alignment explanation
Indices: 81091853--81092115 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
81091843 TCCTCGTTCA
* * * *
81091853 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
81091892 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
81091931 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
81091971 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
81092011 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
81092051 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
81092092 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81092116 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:81092075 original size:120 final size:119
Alignment explanation
Indices: 81091853--81092115 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
81091843 TCCTCGTTCA
* * *
81091853 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
81091918 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
81091971 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
81092036 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
81092092 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
81092116 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:81092124 original size:41 final size:41
Alignment explanation
Indices: 81092047--81092124 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
81092037 TTTGTATCTC
* * *
81092047 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
81092088 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
81092125 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:81099847 original size:39 final size:40
Alignment explanation
Indices: 81099802--81099973 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
81099792 GCTCCTCGTT
* * *
81099802 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
81099842 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
81099881 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
81099921 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
81099961 CAAATGCCTTCGG
1 CAAATGCCTTCGG
81099974 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:81099902 original size:40 final size:39
Alignment explanation
Indices: 81099804--81100026 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
81099794 TCCTCGTTCA
* * * *
81099804 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
81099843 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
81099882 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
81099922 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
81099962 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
81100003 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81100027 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:81099986 original size:80 final size:79
Alignment explanation
Indices: 81099802--81100026 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
81099792 GCTCCTCGTT
* * * * *
81099802 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
81099866 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
81099881 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
81099946 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
81099961 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
81100025 GA
63 GA
81100027 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:81100035 original size:41 final size:41
Alignment explanation
Indices: 81099958--81100035 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
81099948 TTTGTATCTC
* * *
81099958 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
81099999 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
81100036 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:81102159 original size:63 final size:63
Alignment explanation
Indices: 81102059--81102183 Score: 196
Period size: 63 Copynumber: 2.0 Consensus size: 63
81102049 CTTAAGCAAC
** * *
81102059 CTTAGTACATCATTAATGTGATTCATGCAAGTCACATAACATCATCTATCATCTTGAAGGTAT
1 CTTAGTACATCATTAACATGATACATGCAAGTCACATAACATCATCTATCATCTTAAAGGTAT
* *
81102122 CTTAGTACATTATTAACATGATACATGCAAGTTACATAACATCATCTATCATCTTAAAGGTA
1 CTTAGTACATCATTAACATGATACATGCAAGTCACATAACATCATCTATCATCTTAAAGGTA
81102184 AGGTACAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.34
Consensus pattern (63 bp):
CTTAGTACATCATTAACATGATACATGCAAGTCACATAACATCATCTATCATCTTAAAGGTAT
Found at i:81103308 original size:28 final size:28
Alignment explanation
Indices: 81103277--81103333 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
81103267 TTTAAATCAG
81103277 TGGTGTGGTGCCTATTTTAATAAATAAT
1 TGGTGTGGTGCCTATTTTAATAAATAAT
* * *
81103305 TGGTGTGGTGTCTATTTTGATTAATAAT
1 TGGTGTGGTGCCTATTTTAATAAATAAT
81103333 T
1 T
81103334 ACTTTTTCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.25, C:0.05, G:0.23, T:0.47
Consensus pattern (28 bp):
TGGTGTGGTGCCTATTTTAATAAATAAT
Found at i:81103771 original size:39 final size:39
Alignment explanation
Indices: 81103717--81103795 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
81103707 AATCTGTATA
81103717 TTACAGATTCCATAAATTGAGCAAGAAATGGATGGTTTC
1 TTACAGATTCCATAAATTGAGCAAGAAATGGATGGTTTC
81103756 TTACAGATTCCATAAATTGAGCAAGAAATGGATGGTTTC
1 TTACAGATTCCATAAATTGAGCAAGAAATGGATGGTTTC
81103795 T
1 T
81103796 GAAGCTGTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (39 bp):
TTACAGATTCCATAAATTGAGCAAGAAATGGATGGTTTC
Found at i:81112360 original size:68 final size:63
Alignment explanation
Indices: 81112212--81112360 Score: 158
Period size: 63 Copynumber: 2.3 Consensus size: 63
81112202 CATATAGTTC
* *
81112212 AGCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAACCAATTTATCTCGT
1 AGCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAACCAATATATCTCGT
* * * *
81112275 AGCTCTCTTGT-CTACATGGTGTACACAT-AGTATCACCCATGCGACCTAGCTACATCATAATGT
1 AGCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGCGACCTAAC--CA--AT-ATAT
*
81112338 CTTGT
59 CTCGT
81112343 AGCTCTCTTGTACACATG
1 AGCTCTCTTGTACACATG
81112361 ATGTGCACTC
Statistics
Matches: 71, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
62 1 0.01
63 42 0.59
64 1 0.01
65 2 0.03
67 2 0.03
68 22 0.31
69 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (63 bp):
AGCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAACCAATATATCTCGT
Found at i:81113098 original size:30 final size:30
Alignment explanation
Indices: 81113064--81113124 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
81113054 TCCTTAACTC
81113064 AAACTTTGGCAAAATTT-CAATTTTACCCCT
1 AAACTTTGGC-AAATTTACAATTTTACCCCT
* * *
81113094 AAACTTTTGCATATTTACAATTTTCCCCCT
1 AAACTTTGGCAAATTTACAATTTTACCCCT
81113124 A
1 A
81113125 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 5 0.19
30 22 0.81
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAATTTACAATTTTACCCCT
Found at i:81114602 original size:17 final size:18
Alignment explanation
Indices: 81114566--81114604 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
81114556 TTTTTCTTAC
*
81114566 TTTATCTATTTTTGAATT
1 TTTATCTACTTTTGAATT
81114584 TTTATCTACTTTT-AATT
1 TTTATCTACTTTTGAATT
81114601 TTTA
1 TTTA
81114605 GAATTTTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.23, C:0.08, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTATCTACTTTTGAATT
Found at i:81116255 original size:13 final size:13
Alignment explanation
Indices: 81116237--81116261 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81116227 GAACCAAAAA
81116237 TCTCTCCTTTTTC
1 TCTCTCCTTTTTC
81116250 TCTCTCCTTTTT
1 TCTCTCCTTTTT
81116262 TTTGTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (13 bp):
TCTCTCCTTTTTC
Found at i:81117359 original size:47 final size:47
Alignment explanation
Indices: 81117299--81117429 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
81117289 CGGTAGTGCG
* * *
81117299 AATAAATTATCAATATATGCAAACAAGCTGCCAATAACGGTAATGTA
1 AATAAATTGTCAATATATGCAAACAAGCTGCCAATAACGATAATGCA
* * *
81117346 GATAAATTGTCAATATATGCAAACAAGCTGCTAGTAACGATAATGCA
1 AATAAATTGTCAATATATGCAAACAAGCTGCCAATAACGATAATGCA
* * * * * *
81117393 AATAAAATGCCAATAGATGTACACAAGATGCCAATAA
1 AATAAATTGTCAATATATGCAAACAAGCTGCCAATAA
81117430 TGTAATAAAT
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.24
Consensus pattern (47 bp):
AATAAATTGTCAATATATGCAAACAAGCTGCCAATAACGATAATGCA
Found at i:81123208 original size:100 final size:100
Alignment explanation
Indices: 81123035--81123236 Score: 404
Period size: 100 Copynumber: 2.0 Consensus size: 100
81123025 AAATGAATAT
81123035 TTCACAATAACTCGCTTAAATCTGCACTTACGCTTTACGATGTCAATTGAATAAGATAGAATACA
1 TTCACAATAACTCGCTTAAATCTGCACTTACGCTTTACGATGTCAATTGAATAAGATAGAATACA
81123100 CCATTAATTGTAACATCCCAAACCCGGCCCAGATG
66 CCATTAATTGTAACATCCCAAACCCGGCCCAGATG
81123135 TTCACAATAACTCGCTTAAATCTGCACTTACGCTTTACGATGTCAATTGAATAAGATAGAATACA
1 TTCACAATAACTCGCTTAAATCTGCACTTACGCTTTACGATGTCAATTGAATAAGATAGAATACA
81123200 CCATTAATTGTAACATCCCAAACCCGGCCCAGATG
66 CCATTAATTGTAACATCCCAAACCCGGCCCAGATG
81123235 TT
1 TT
81123237 ATGACCGGAT
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 102 1.00
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.28
Consensus pattern (100 bp):
TTCACAATAACTCGCTTAAATCTGCACTTACGCTTTACGATGTCAATTGAATAAGATAGAATACA
CCATTAATTGTAACATCCCAAACCCGGCCCAGATG
Found at i:81124166 original size:27 final size:27
Alignment explanation
Indices: 81124118--81124277 Score: 141
Period size: 27 Copynumber: 5.9 Consensus size: 27
81124108 GCGAGGCTGC
* *
81124118 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
* *
81124145 CAAATATTGTAGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
81124171 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
** * *
81124198 CAGATAATTGCCGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
81124225 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
81124252 TAGATAAATTGTGGCATAGCCACCAG
1 CAGAT--ATTGTGGCAGAGCCACCAG
81124278 GACGCTTCCT
Statistics
Matches: 108, Mismatches: 16, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
26 9 0.08
27 78 0.72
28 19 0.18
29 2 0.02
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:81124218 original size:54 final size:55
Alignment explanation
Indices: 81124160--81124277 Score: 193
Period size: 54 Copynumber: 2.2 Consensus size: 55
81124150 ATTGTAGCAG
81124160 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGAT-AATTGCCGCAT
1 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAATTGCCGCAT
* * **
81124214 AGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATTAGATAAATTGTGGCAT
1 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAATTGCCGCAT
81124269 AGCCACCAG
1 AGCCACCAG
81124278 GACGCTTCCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
54 41 0.69
55 18 0.31
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.17
Consensus pattern (55 bp):
AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAATTGCCGCAT
Found at i:81132170 original size:27 final size:27
Alignment explanation
Indices: 81132140--81132498 Score: 391
Period size: 27 Copynumber: 13.2 Consensus size: 27
81132130 GTAACGAAGT
81132140 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
81132167 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
81132194 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
81132221 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
81132248 CACCAGAT-TAGATAAATTGTGGCATAGC
1 CACCAGATACAGAT--ATTGTGGCAGAGC
*
81132276 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
81132303 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
81132330 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
81132357 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
81132384 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
81132411 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
81132438 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
81132465 CACCAGAT-TAGATAAATTGTGGCATAGC
1 CACCAGATACAGAT--ATTGTGGCAGAGC
81132493 CACCAG
1 CACCAG
81132499 GACGCTTCCT
Statistics
Matches: 283, Mismatches: 24, Indels: 49
0.79 0.07 0.14
Matches are distributed among these distances:
26 18 0.06
27 217 0.77
28 44 0.16
29 4 0.01
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:81132199 original size:54 final size:54
Alignment explanation
Indices: 81132140--81132501 Score: 654
Period size: 54 Copynumber: 6.7 Consensus size: 54
81132130 GTAACGAAGT
* *
81132140 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
81132194 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
81132248 CACCAGATTAGATAAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
81132303 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
81132357 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
81132411 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
81132465 CACCAGATTAGATAAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAGGAC
81132502 GCTTCCTCCA
Statistics
Matches: 300, Mismatches: 5, Indels: 5
0.97 0.02 0.02
Matches are distributed among these distances:
53 5 0.02
54 219 0.73
55 76 0.25
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:81132909 original size:16 final size:16
Alignment explanation
Indices: 81132888--81132959 Score: 65
Period size: 16 Copynumber: 4.4 Consensus size: 16
81132878 CTCAAAATAC
81132888 CGGCTTTTCGGTATTT
1 CGGCTTTTCGGTATTT
*** **
81132904 CGGCTTTTCTCAAAATAC
1 CGGC-TTT-TCGGTATTT
81132922 CGGCTTTTCGGTATTT
1 CGGCTTTTCGGTATTT
81132938 CGGCTTTTCGGCT-TTT
1 CGGCTTTTCGG-TATTT
81132954 CGGCTT
1 CGGCTT
81132960 GTGCCGATCT
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
16 28 0.65
17 7 0.16
18 8 0.19
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.44
Consensus pattern (16 bp):
CGGCTTTTCGGTATTT
Done.