Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 242 of 284
Found at i:81132920 original size:34 final size:34
Alignment explanation
Indices: 81132877--81132946 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
81132867 ACTCACAAGA
81132877 TCTCAAAATACCGGCTTTTCGGTATTTCGGCTTT
1 TCTCAAAATACCGGCTTTTCGGTATTTCGGCTTT
81132911 TCTCAAAATACCGGCTTTTCGGTATTTCGGCTTT
1 TCTCAAAATACCGGCTTTTCGGTATTTCGGCTTT
81132945 TC
1 TC
81132947 GGCTTTTCGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.41
Consensus pattern (34 bp):
TCTCAAAATACCGGCTTTTCGGTATTTCGGCTTT
Found at i:81132946 original size:8 final size:8
Alignment explanation
Indices: 81132922--81132959 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
81132912 CTCAAAATAC
81132922 CGGCTTTT
1 CGGCTTTT
81132930 CGG-TATTT
1 CGGCT-TTT
81132938 CGGCTTTT
1 CGGCTTTT
81132946 CGGCTTTT
1 CGGCTTTT
81132954 CGGCTT
1 CGGCTT
81132960 GTGCCGATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 1 0.04
8 26 0.93
9 1 0.04
ACGTcount: A:0.03, C:0.24, G:0.26, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:81138103 original size:28 final size:28
Alignment explanation
Indices: 81138066--81138121 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
81138056 TTTTGGAGAA
81138066 AGAAATCACCATTTTTGGTGCTTTGAAG
1 AGAAATCACCATTTTTGGTGCTTTGAAG
81138094 AGAAATCACCATTTTTGGTGCTTTGAAG
1 AGAAATCACCATTTTTGGTGCTTTGAAG
81138122 GTCCGGCTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (28 bp):
AGAAATCACCATTTTTGGTGCTTTGAAG
Found at i:81140275 original size:34 final size:35
Alignment explanation
Indices: 81140229--81140315 Score: 108
Period size: 34 Copynumber: 2.5 Consensus size: 35
81140219 AGGTAAGTAT
81140229 ATGT-AAGCTTATATTGAACTTGAT-TATTCGATTAC
1 ATGTGAAG-TTATATTGAACTT-ATATATTCGATTAC
* **
81140264 ATGTGAA-TTATATTGAACTTATATATTCGGTTTT
1 ATGTGAAGTTATATTGAACTTATATATTCGATTAC
81140298 ATGTGAAGTTATATTGAA
1 ATGTGAAGTTATATTGAA
81140316 TGTGCATATT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
33 2 0.04
34 28 0.61
35 14 0.30
36 2 0.04
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.45
Consensus pattern (35 bp):
ATGTGAAGTTATATTGAACTTATATATTCGATTAC
Found at i:81143993 original size:30 final size:30
Alignment explanation
Indices: 81143959--81144016 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
81143949 TCCTTAACTC
81143959 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
81143989 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTTGCAAAATTACAATTTTGCCC
81144017 ATAGGCTCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:81145532 original size:29 final size:30
Alignment explanation
Indices: 81145503--81145578 Score: 125
Period size: 30 Copynumber: 2.5 Consensus size: 30
81145493 TTCGGCTATC
*
81145503 AATTATGAAAAGGGATGGTGATGACCATCA
1 AATTATGAAAAGGGATGGTGACGACCATCA
**
81145533 AACAATGAAAAGGGATGGTGACGACCATCA
1 AATTATGAAAAGGGATGGTGACGACCATCA
81145563 AATTATGAAAAGGGAT
1 AATTATGAAAAGGGAT
81145579 ATCTTCGACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.43, C:0.11, G:0.26, T:0.20
Consensus pattern (30 bp):
AATTATGAAAAGGGATGGTGACGACCATCA
Found at i:81145600 original size:30 final size:30
Alignment explanation
Indices: 81145566--81145638 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
81145556 ACCATCAAAT
* * *
81145566 TATGAAAAGGGATATCTTCGACTGTCGAAC
1 TATGAAAAGGGATAACTTCAACTATCGAAC
* *
81145596 TATGAAAAGGGATAACTTCAATTATCGAAT
1 TATGAAAAGGGATAACTTCAACTATCGAAC
81145626 TATGAAAAGGGAT
1 TATGAAAAGGGAT
81145639 GGGTCAACCA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (30 bp):
TATGAAAAGGGATAACTTCAACTATCGAAC
Found at i:81159758 original size:45 final size:45
Alignment explanation
Indices: 81159700--81159787 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
81159690 CTATGTGATC
* *
81159700 TGAACTCAATGAGTTGTGGTCTGAATTTATGATATATGTGACATA
1 TGAACTCAATGAGTTGTGGTCTGAATTCATGATATATATGACATA
* * * *
81159745 TGAACTCATTGAGTTGTGTTCTGAGTTCATGATGTATATGACA
1 TGAACTCAATGAGTTGTGGTCTGAATTCATGATATATATGACA
81159788 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (45 bp):
TGAACTCAATGAGTTGTGGTCTGAATTCATGATATATATGACATA
Found at i:81160701 original size:31 final size:31
Alignment explanation
Indices: 81160663--81160722 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
81160653 TTAATGTGTA
*
81160663 AGACAATAAATGTGATGCAAATGTGTAACCT
1 AGACAATAAATGTGATACAAATGTGTAACCT
*
81160694 AGACAATAAATGTGGTACAAATGTGTAAC
1 AGACAATAAATGTGATACAAATGTGTAAC
81160723 TTGAAAGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (31 bp):
AGACAATAAATGTGATACAAATGTGTAACCT
Found at i:81163597 original size:37 final size:37
Alignment explanation
Indices: 81163547--81163620 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
81163537 GATCGATGTC
*
81163547 GTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGATTT
1 GTTGTGATTAGCC--ATGAGATGTGGCTTATAATGATTT
81163584 GTTGT-ATGTAGCCATGAGATGTGGCTTATAATGATTT
1 GTTGTGAT-TAGCCATGAGATGTGGCTTATAATGATTT
81163621 TGGCTTGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 3 0.09
36 4 0.12
37 26 0.79
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (37 bp):
GTTGTGATTAGCCATGAGATGTGGCTTATAATGATTT
Found at i:81169767 original size:30 final size:30
Alignment explanation
Indices: 81169731--81169791 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
81169721 TCCTTAACTC
81169731 AAACTTTGGAAAAGTTACAATTTTGCCCCT
1 AAACTTTGGAAAAGTTACAATTTTGCCCCT
* * * * *
81169761 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAGTTACAATTTTGCCCCT
81169791 A
1 A
81169792 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAGTTACAATTTTGCCCCT
Found at i:81182158 original size:12 final size:13
Alignment explanation
Indices: 81182137--81182163 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81182127 TGGACAAAAA
81182137 TTGGCTTTTTAAT
1 TTGGCTTTTTAAT
81182150 TTGGCTTTTTAAT
1 TTGGCTTTTTAAT
81182163 T
1 T
81182164 CATTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.07, G:0.15, T:0.63
Consensus pattern (13 bp):
TTGGCTTTTTAAT
Found at i:81183273 original size:42 final size:42
Alignment explanation
Indices: 81183222--81183327 Score: 169
Period size: 42 Copynumber: 2.5 Consensus size: 42
81183212 GTAGACACAC
* *
81183222 GGGCGTGTGTCTAGGCTGTGTGTGACACACGGTCTACCCCAT
1 GGGCATGTGTCTAGGCCGTGTGTGACACACGGTCTACCCCAT
*
81183264 GGGCATGTGTCTAGGCCGTGTGTGACACACGGTCTTCCCCAT
1 GGGCATGTGTCTAGGCCGTGTGTGACACACGGTCTACCCCAT
81183306 GGGCATGTGTTCT-GGCCGTGTG
1 GGGCATGTG-TCTAGGCCGTGTG
81183328 CCCCCTGTAC
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
42 57 0.95
43 3 0.05
ACGTcount: A:0.12, C:0.25, G:0.35, T:0.27
Consensus pattern (42 bp):
GGGCATGTGTCTAGGCCGTGTGTGACACACGGTCTACCCCAT
Found at i:81188208 original size:30 final size:29
Alignment explanation
Indices: 81188173--81188238 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
81188163 ATCAAATGTA
* * *
81188173 TAAATTATTGATAAAAGTTTGTGTATAAGT
1 TAAATTATTGA-AAAAGATAGCGTATAAGT
*
81188203 TAAATTTATTTAAAAAGATAGCGTATAAGT
1 TAAA-TTATTGAAAAAGATAGCGTATAAGT
81188233 TAAATT
1 TAAATT
81188239 TAGTAGTGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
29 2 0.06
30 23 0.74
31 6 0.19
ACGTcount: A:0.44, C:0.02, G:0.14, T:0.41
Consensus pattern (29 bp):
TAAATTATTGAAAAAGATAGCGTATAAGT
Found at i:81190184 original size:22 final size:22
Alignment explanation
Indices: 81190127--81190287 Score: 150
Period size: 22 Copynumber: 7.1 Consensus size: 22
81190117 CCTGAGCTGA
81190127 TGAACAGTAAGCTCTAAT-GAGC
1 TGAACAGTAAGCTCT-ATCGAGC
*
81190149 TGAAACGGTAAGCTCTATCGAGC
1 TG-AACAGTAAGCTCTATCGAGC
81190172 TGAACAGTAAGCTCTATCGAGC
1 TGAACAGTAAGCTCTATCGAGC
* *
81190194 TGAACACTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATCGAGC
* * *
81190216 TGAACAGTAAACTC-ATACAAGT
1 TGAACAGTAAGCTCTAT-CGAGC
* *
81190238 TGAAACAGTAAGCTCCAAT-GAGT
1 TG-AACAGTAAGCT-CTATCGAGC
81190261 TGACAACAGTAAGCTCT-TACGAGC
1 TG--AACAGTAAGCTCTAT-CGAGC
81190285 TGA
1 TGA
81190288 TATATTAGTA
Statistics
Matches: 116, Mismatches: 14, Indels: 18
0.78 0.09 0.12
Matches are distributed among these distances:
21 2 0.02
22 61 0.53
23 34 0.29
24 17 0.15
25 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.23
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCGAGC
Found at i:81190245 original size:67 final size:67
Alignment explanation
Indices: 81190127--81190252 Score: 166
Period size: 67 Copynumber: 1.9 Consensus size: 67
81190117 CCTGAGCTGA
* * * *
81190127 TGAACAGTAAGCTCTAATGAGCTGAAACGGTAAGCTCTATCGAGCTGAACAGTAAGCTCTATCGA
1 TGAACACTAAGCTCTAATGAGCTGAAACAGTAAACTCTATCAAGCTGAACAGTAAGCTCTATCGA
81190192 GC
66 GC
* *
81190194 TGAACACTAAGCTCTATTGAGCTG-AACAGTAAACTC-ATACAAGTTGAAACAGTAAGCTC
1 TGAACACTAAGCTCTAATGAGCTGAAACAGTAAACTCTAT-CAAGCTG-AACAGTAAGCTC
81190253 CAATGAGTTG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
65 2 0.04
66 15 0.29
67 34 0.67
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (67 bp):
TGAACACTAAGCTCTAATGAGCTGAAACAGTAAACTCTATCAAGCTGAACAGTAAGCTCTATCGA
GC
Found at i:81194625 original size:57 final size:57
Alignment explanation
Indices: 81194540--81194659 Score: 161
Period size: 57 Copynumber: 2.1 Consensus size: 57
81194530 AGAAATGGTG
* * * *
81194540 AAATGGAGAAATAGGAAACATTTAGAAATGATTATGGTTTTTTCCAAAATTAAAATGA
1 AAATGAAGAAATA-GAAACATTTAGAAATGAATATGGTTTTCTCCAAAATGAAAATGA
* *
81194598 AAATGAAGAAAT-GAAATCATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAAATGA
1 AAATGAAGAAATAGAAA-CATTTAGAAATGAATATGGTTTTCTCCAAAATGAAAATGA
81194655 AAATG
1 AAATG
81194660 CCCTGAAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 4 0.07
57 40 0.73
58 11 0.20
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (57 bp):
AAATGAAGAAATAGAAACATTTAGAAATGAATATGGTTTTCTCCAAAATGAAAATGA
Found at i:81196286 original size:10 final size:10
Alignment explanation
Indices: 81196248--81196290 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
81196238 AAAAAGTATT
81196248 GTTTAATTAA
1 GTTTAATTAA
*
81196258 GTATAATTAA
1 GTTTAATTAA
81196268 GTAAATTAATTAA
1 GT---TTAATTAA
81196281 GTTTAATTAA
1 GTTTAATTAA
81196291 ACCTAAACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
10 19 0.68
13 9 0.32
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (10 bp):
GTTTAATTAA
Found at i:81197032 original size:24 final size:24
Alignment explanation
Indices: 81196964--81197031 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
81196954 TCAAGAATAT
* **
81196964 GTATTGAAT-TGAATTGTGTGATG
1 GTATTGAATGCGAATTGTGTGACA
81196987 GTATTGAATGCGAATTGTGTGACA
1 GTATTGAATGCGAATTGTGTGACA
81197011 GTATTGAATGCCGAGATTGTG
1 GTATTGAATG-CGA-ATTGTG
81197032 AATTAGTCTG
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
23 9 0.23
24 21 0.54
25 3 0.08
26 6 0.15
ACGTcount: A:0.26, C:0.06, G:0.31, T:0.37
Consensus pattern (24 bp):
GTATTGAATGCGAATTGTGTGACA
Found at i:81198482 original size:27 final size:26
Alignment explanation
Indices: 81198434--81198485 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
81198424 GCGAGGCTGC
*
81198434 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
81198460 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
81198486 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:81199006 original size:27 final size:27
Alignment explanation
Indices: 81198721--81198995 Score: 390
Period size: 27 Copynumber: 10.2 Consensus size: 27
81198711 AACACCCTAG
** * *
81198721 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
81198748 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
81198775 GGGTAAAACAATAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
81198802 GGGTAAAAC-GATAATTCTGTAAATCAA
1 GGGTAAAACAG-TAATTCTGTAAATCGA
* * *
81198829 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
81198856 GGGTAAAACAGTAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
81198883 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
81198910 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
81198937 GGGTAAAACAGTAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
81198964 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
81198991 GGGTA
1 GGGTA
81198996 CTTTGGTAAT
Statistics
Matches: 223, Mismatches: 23, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
27 222 1.00
28 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTGTAAATCGA
Found at i:81202417 original size:49 final size:48
Alignment explanation
Indices: 81202363--81202484 Score: 129
Period size: 49 Copynumber: 2.5 Consensus size: 48
81202353 TCGATGCTAT
* *
81202363 GTCCCAGATAGGTCTTACACTGACTTTCATATATCAAGGCCGATGCCGCA
1 GTCCCAGATAGGTCTTACACTGACTCTAATATATCAAGGCCGAT-CC-CA
* * * * * *
81202413 -TCCCAGACAAGTCTTACACTGGCTCTAATCTATCAATGTCGATCCCA
1 GTCCCAGATAGGTCTTACACTGACTCTAATATATCAAGGCCGATCCCA
*
81202460 TGTCCTAGATAGGTCTTACACTGAC
1 -GTCCCAGATAGGTCTTACACTGAC
81202485 ACACAACAAG
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
47 2 0.03
48 2 0.03
49 54 0.93
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
GTCCCAGATAGGTCTTACACTGACTCTAATATATCAAGGCCGATCCCA
Found at i:81202673 original size:94 final size:94
Alignment explanation
Indices: 81202502--81202673 Score: 213
Period size: 94 Copynumber: 1.8 Consensus size: 94
81202492 AAGCTAATGC
* * * *
81202502 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCTTGAGGTCGATGCATGTCCCAGACATATC
1 CATGTCCCAGATAGGTCTTACACTAACTTGCATATCTCGAGGTCGATGCATGTCCCAAACATATC
*
81202567 TTACATTAGCTCTTGTCTCAATGCCGATG
66 TTACACTAGCTCTTGTCTCAATGCCGATG
* * * *
81202596 CATGTCCCAG-TCATGTCTTACACTAACTTGCATCTCTCGA-GTCCTATGCATGTCCCAAACATG
1 CATGTCCCAGAT-AGGTCTTACACTAACTTGCATATCTCGAGGT-CGATGCATGTCCCAAACATA
* *
81202659 TCTTAGACTGGCTCT
64 TCTTACACTAGCTCT
81202674 CTTAATGTGG
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
93 3 0.05
94 62 0.95
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (94 bp):
CATGTCCCAGATAGGTCTTACACTAACTTGCATATCTCGAGGTCGATGCATGTCCCAAACATATC
TTACACTAGCTCTTGTCTCAATGCCGATG
Found at i:81205999 original size:18 final size:18
Alignment explanation
Indices: 81205976--81206010 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81205966 TTCCTGGGTG
81205976 GTAGTCGATTATCAACTA
1 GTAGTCGATTATCAACTA
**
81205994 GTAGTCTTTTATCAACT
1 GTAGTCGATTATCAACT
81206011 CCAACCATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (18 bp):
GTAGTCGATTATCAACTA
Found at i:81209611 original size:31 final size:32
Alignment explanation
Indices: 81209489--81209612 Score: 121
Period size: 31 Copynumber: 3.8 Consensus size: 32
81209479 AAGGTATGTG
* * *
81209489 TATATATACAATATATATTCT-TGGGTTTTGT
1 TATATATATAATATATATTATATGGGTCTTGT
**
81209520 TATATATATAATATATA-TACGTGGGTCTTGAT
1 TATATATATAATATATATTATATGGGTCTTG-T
*
81209552 TATATATATAATATACATGCATATATGGGTCTTGT
1 TATATATATAATATATAT---TATATGGGTCTTGT
81209587 T-T-TATATAATATATATGTATATGGGT
1 TATATATATAATATATAT-TATATGGGT
81209613 TTTATAATTC
Statistics
Matches: 78, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
30 1 0.01
31 33 0.42
32 17 0.22
33 13 0.17
34 1 0.01
35 2 0.03
36 11 0.14
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.47
Consensus pattern (32 bp):
TATATATATAATATATATTATATGGGTCTTGT
Found at i:81209883 original size:36 final size:36
Alignment explanation
Indices: 81209843--81209923 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
81209833 TTGTGAACCA
* * **
81209843 TGTTAATTTGGCGAATTATATTATTATGGCGAACTG
1 TGTTAATTTAGCGAATTATATTAATATGAAGAACTG
* * *
81209879 TGTTAATTTAGTGATTTGTATTAATATGAAGAACTG
1 TGTTAATTTAGCGAATTATATTAATATGAAGAACTG
*
81209915 TATTAATTT
1 TGTTAATTT
81209924 CCCAAATTGT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.46
Consensus pattern (36 bp):
TGTTAATTTAGCGAATTATATTAATATGAAGAACTG
Found at i:81210426 original size:68 final size:68
Alignment explanation
Indices: 81210347--81210643 Score: 558
Period size: 68 Copynumber: 4.4 Consensus size: 68
81210337 TCTATTCAAT
81210347 AGAGACAGCGTAGGGCTCTATGAGTTGAGAGTGTGGGAGAGTGTGAGCATCTGCACTACACTTAT
1 AGAGACAGCGTAGGGCTCTATGAGTTGAGAGTGTGGGAGAGTGTGAGCATCTGCACTACACTTAT
81210412 ATC
66 ATC
81210415 AGAGACAGCGTAGGGCTCTATGAGTTGAGAGTGTGGGAGAGTGTGAGCATCTGCACTACACTTAT
1 AGAGACAGCGTAGGGCTCTATGAGTTGAGAGTGTGGGAGAGTGTGAGCATCTGCACTACACTTAT
81210480 ATC
66 ATC
81210483 AGAGACAGCGTAGGGCTCTATGAGTTGAGAGTGTGGGAGAGTGTGAGCATCTGCACTACACTTAT
1 AGAGACAGCGTAGGGCTCTATGAGTTGAGAGTGTGGGAGAGTGTGAGCATCTGCACTACACTTAT
81210548 ATC
66 ATC
* *
81210551 AGAGACAGCGTAGGGCTCTATGAGTTGAGAGTGTGGGAGAGTGTGAGCATCCGCGCTACACTTAT
1 AGAGACAGCGTAGGGCTCTATGAGTTGAGAGTGTGGGAGAGTGTGAGCATCTGCACTACACTTAT
81210616 ATC
66 ATC
* *
81210619 AGAGACAGCGTAGGGGTCTTTGAGT
1 AGAGACAGCGTAGGGCTCTATGAGT
81210644 CCAAAAGCAA
Statistics
Matches: 225, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 225 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (68 bp):
AGAGACAGCGTAGGGCTCTATGAGTTGAGAGTGTGGGAGAGTGTGAGCATCTGCACTACACTTAT
ATC
Found at i:81222633 original size:170 final size:170
Alignment explanation
Indices: 81222351--81222690 Score: 644
Period size: 170 Copynumber: 2.0 Consensus size: 170
81222341 GTGAAAATTT
*
81222351 CGTGAAGAAATTTTATGCATAAAGTGCTTAAATTGAAATTAGGGACTAAATTGAATAATTTGTAA
1 CGTGAAGAAATTTTATGCATAAAGTGCTTAAATTGAAATTAGGGACTAAATCGAATAATTTGTAA
81222416 AACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTACGAGGTCCTAAATA
66 AACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTACGAGGTCCTAAATA
*
81222481 GGAATTTTACCAATTTCTAATTCTATGGACAAAAATTGGA
131 GGAATTTTACCAATTTCTAAGTCTATGGACAAAAATTGGA
81222521 CGTGAAGAAATTTTATGCATAAAGTGCTTAAATTGAAATTAGGGACTAAATCGAATAATTTGTAA
1 CGTGAAGAAATTTTATGCATAAAGTGCTTAAATTGAAATTAGGGACTAAATCGAATAATTTGTAA
* *
81222586 AACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTAGGAGGTCTTAAATA
66 AACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTACGAGGTCCTAAATA
81222651 GGAATTTTACCAATTTCTAAGTCTATGGACAAAAATTGGA
131 GGAATTTTACCAATTTCTAAGTCTATGGACAAAAATTGGA
81222691 TATGGATGGA
Statistics
Matches: 166, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
170 166 1.00
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (170 bp):
CGTGAAGAAATTTTATGCATAAAGTGCTTAAATTGAAATTAGGGACTAAATCGAATAATTTGTAA
AACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTACGAGGTCCTAAATA
GGAATTTTACCAATTTCTAAGTCTATGGACAAAAATTGGA
Found at i:81223098 original size:149 final size:149
Alignment explanation
Indices: 81222823--81223125 Score: 570
Period size: 149 Copynumber: 2.0 Consensus size: 149
81222813 CAAGGAGAAA
*
81222823 CCATGGCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCTCGTTTTTAATG
1 CCATAGCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCTCGTTTTTAATG
81222888 ATTTTTACGTTTTTAGAGTCCCGATAGCTCGATTTAGCTTATGCTAACAATAATTTAACCTAGGG
66 ATTTTTACGTTTTTAGAGTCCCGATAGCTCGATTTAGCTTATGCTAACAATAATTTAACCTAGGG
81222953 TTTATATTTGGAAAAATAC
131 TTTATATTTGGAAAAATAC
81222972 CCATAGCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCTCGTTTTTAATG
1 CCATAGCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCTCGTTTTTAATG
* * *
81223037 ATTTTTACGTTTTTGGAGTCTCGATAGCTCGATTTAGCTTATGCTAGCAATAATTTAACCTAGGG
66 ATTTTTACGTTTTTAGAGTCCCGATAGCTCGATTTAGCTTATGCTAACAATAATTTAACCTAGGG
81223102 TTTATATTTGGAAAAATAC
131 TTTATATTTGGAAAAATAC
81223121 CCATA
1 CCATA
81223126 AGTGAAATTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 150 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (149 bp):
CCATAGCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGCCTCGTTTTTAATG
ATTTTTACGTTTTTAGAGTCCCGATAGCTCGATTTAGCTTATGCTAACAATAATTTAACCTAGGG
TTTATATTTGGAAAAATAC
Found at i:81223489 original size:187 final size:187
Alignment explanation
Indices: 81223174--81223547 Score: 694
Period size: 187 Copynumber: 2.0 Consensus size: 187
81223164 TGAGGTTTTA
*
81223174 AATTATGTTAGACAACTTGTGCTACTCGGTTTTAAGCGAAAACTAGCAAAATGGCTTAATCGGTA
1 AATTATGTTAGACAACTTGTGCTACTCGGTTTTAAGCGAAAACTAGCAAAAGGGCTTAATCGGTA
*
81223239 AAAATACTTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGGGAAAAA
66 AAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGGGAAAAA
81223304 TAATCAGCATGTCATAAAACATAAGAAAATAGGCTGAAGTTTAATTTACGAGCTTTG
131 TAATCAGCATGTCATAAAACATAAGAAAATAGGCTGAAGTTTAATTTACGAGCTTTG
81223361 AATTATGTTAGACAACTTGTGCTACTCGGTTTTAAGCGAAAACTAGCAAAAGGGCTTAATCGGTA
1 AATTATGTTAGACAACTTGTGCTACTCGGTTTTAAGCGAAAACTAGCAAAAGGGCTTAATCGGTA
* *
81223426 AAAATACCTAATAGTCCTAAGTACATGTTAGAGTGAGAATTTGATGTTTCCATAGAAGGGAAAAA
66 AAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGGGAAAAA
* *
81223491 TGATCAGCATGTCATAAAACATACGAAAATAGGCTGAAGTTTAATTTACGAGCTTTG
131 TAATCAGCATGTCATAAAACATAAGAAAATAGGCTGAAGTTTAATTTACGAGCTTTG
81223548 GGGCAAAAGT
Statistics
Matches: 181, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
187 181 1.00
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (187 bp):
AATTATGTTAGACAACTTGTGCTACTCGGTTTTAAGCGAAAACTAGCAAAAGGGCTTAATCGGTA
AAAATACCTAATAGTCATAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGGGAAAAA
TAATCAGCATGTCATAAAACATAAGAAAATAGGCTGAAGTTTAATTTACGAGCTTTG
Found at i:81223875 original size:158 final size:158
Alignment explanation
Indices: 81223584--81223898 Score: 553
Period size: 158 Copynumber: 2.0 Consensus size: 158
81223574 TTAGGGGCAA
81223584 AACTGTAATTTTGCCAAAATATGATTTTGGGTCAATTTGAATAATGTGAGTCCTAATTAGACTAT
1 AACTGTAATTTTGCCAAAATATGATTTTGGGTCAATTTGAATAATGTGAGTCCTAATTAGACTAT
*
81223649 ATCTTAAATGATAGAGCAAGGAAAATTAAAATTCGGGCTAAAATGGGGAAAATACCAAGTTGTGG
66 ATCTTAAATGATAGAGCAAGGAAAATAAAAATTCGGGCTAAAATGGGGAAAATACCAAGTTGTGG
81223714 ACGAAATGGTAAAAGTAGCCATTTTCGC
131 ACGAAATGGTAAAAGTAGCCATTTTCGC
81223742 AACTGTAATTTTGCCAAAATATGATTTTGGGTCAATTTGAATAATGTGAG-CCATAATTAGACTA
1 AACTGTAATTTTGCCAAAATATGATTTTGGGTCAATTTGAATAATGTGAGTCC-TAATTAGACTA
* * *
81223806 TATTTTAAATGATAGAGCAATGAAAACTAAAAATT-GTGCTAAAATGGGGAAAATACCAAGTTGT
65 TATCTTAAATGATAGAGCAAGGAAAA-TAAAAATTCGGGCTAAAATGGGGAAAATACCAAGTTGT
*
81223870 TGACGAAATGGTAAAAGTAGCCATTTTCG
129 GGACGAAATGGTAAAAGTAGCCATTTTCG
81223899 GATACGAGGT
Statistics
Matches: 150, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
157 2 0.01
158 141 0.94
159 7 0.05
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (158 bp):
AACTGTAATTTTGCCAAAATATGATTTTGGGTCAATTTGAATAATGTGAGTCCTAATTAGACTAT
ATCTTAAATGATAGAGCAAGGAAAATAAAAATTCGGGCTAAAATGGGGAAAATACCAAGTTGTGG
ACGAAATGGTAAAAGTAGCCATTTTCGC
Found at i:81224237 original size:46 final size:45
Alignment explanation
Indices: 81224187--81224362 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 45
81224177 TGTTTGGGCA
* *
81224187 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
81224233 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
81224280 TCC-AAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAA-CTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
81224326 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
81224363 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.63
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:81224342 original size:93 final size:93
Alignment explanation
Indices: 81224183--81224354 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
81224173 AGGATGTTTG
* * * *
81224183 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
81224248 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
81224276 GGCATCC-AAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGA
1 GGCATCCGAA-CTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGA
81224340 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
81224355 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:81231087 original size:48 final size:48
Alignment explanation
Indices: 81231027--81231294 Score: 322
Period size: 48 Copynumber: 5.6 Consensus size: 48
81231017 ATGAGATCCC
* * ** * *
81231027 GTGTAAGTCCATGTCTGGGACATGGCATCGGTGAAAATGTATGTCCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATATATGTGCCA
* *
81231075 GTGTAAGACCATGTCTGGGATATGGCATCGGCGATTATATATGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATATATGTGCCA
* *
81231123 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATTTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATATATGTGCCA
* * *
81231171 GTGTAAGACCATGTCTTGGACATGGCATCAGCGATTATATATTTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATATATGTGCCA
* * * * **
81231219 GTGTAAGACCATGTCTTGGACATGGCATTGGCGATGATATGTGGTTTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATATAT-GTGCCA
* * *
81231268 -TGTAAAACTATGTCAGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
81231295 TGGTACTTTA
Statistics
Matches: 193, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
48 190 0.98
49 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATATATGTGCCA
Found at i:81246868 original size:35 final size:34
Alignment explanation
Indices: 81246818--81246886 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 34
81246808 TGGAAGTGGG
*
81246818 AAAGAGTTAACATGGACTTCGTGACAGGATTACC
1 AAAGAGTTAACATGGACTTCGTGACAGGACTACC
* *
81246852 NAAAGAGTT-ACTATGGATTTTGTGACAGGACTACC
1 -AAAGAGTTAAC-ATGGACTTCGTGACAGGACTACC
81246887 TATGACACCG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 2 0.07
35 28 0.93
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.26
Consensus pattern (34 bp):
AAAGAGTTAACATGGACTTCGTGACAGGACTACC
Found at i:81248287 original size:9 final size:9
Alignment explanation
Indices: 81248273--81248305 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
81248263 GGCATAAGGG
81248273 CATTTTGGT
1 CATTTTGGT
81248282 CATTTTGGT
1 CATTTTGGT
*
81248291 CATTTTGGG
1 CATTTTGGT
81248300 CATTTT
1 CATTTT
81248306 AATGAATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.12, G:0.21, T:0.55
Consensus pattern (9 bp):
CATTTTGGT
Found at i:81251984 original size:16 final size:16
Alignment explanation
Indices: 81251963--81252002 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
81251953 TTTTCATGCG
81251963 AGCTTACTAAGCGTAA
1 AGCTTACTAAGCGTAA
81251979 AGCTTACTAAGCGTAA
1 AGCTTACTAAGCGTAA
81251995 AGCTTACT
1 AGCTTACT
81252003 CCCTCCTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (16 bp):
AGCTTACTAAGCGTAA
Found at i:81259778 original size:42 final size:42
Alignment explanation
Indices: 81259719--81259803 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
81259709 TATTTTGATG
81259719 TCAGATTTGTGGTCCCGAAACCACTATTCCGACTAGGCCCTA
1 TCAGATTTGTGGTCCCGAAACCACTATTCCGACTAGGCCCTA
*
81259761 TCAGATTTGTGGTCCCGAAACCACTATTTCGACTAGGCCCTA
1 TCAGATTTGTGGTCCCGAAACCACTATTCCGACTAGGCCCTA
81259803 T
1 T
81259804 TTCGAGATGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (42 bp):
TCAGATTTGTGGTCCCGAAACCACTATTCCGACTAGGCCCTA
Found at i:81260763 original size:43 final size:42
Alignment explanation
Indices: 81260696--81260822 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 42
81260686 ATATCGTACA
* * *
81260696 ATGCTAACGTCCTAGACGTGGTCTTACATGTA-ATCATATATCG
1 ATGCCAACGTCC-AGACGTGGTCTTACATG-AGAACACATATCG
81260739 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGAGAACACATATCG
1 ATGCCAAC-GT-CCAGAC-GTGGTCTTACATGAGAACACATATCG
**
81260782 ATGCCAACGTCCAGACGTGGTCTTACACAAGAACACATATC
1 ATGCCAACGTCCAGACGTGGTCTTACATGAGAACACATATC
81260823 AGAAATCCTA
Statistics
Matches: 73, Mismatches: 5, Indels: 13
0.80 0.05 0.14
Matches are distributed among these distances:
41 1 0.01
42 30 0.41
43 37 0.51
44 5 0.07
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCAGACGTGGTCTTACATGAGAACACATATCG
Found at i:81261346 original size:30 final size:29
Alignment explanation
Indices: 81261312--81261372 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
81261302 TGCTCATACA
* *
81261312 AGTCCATACATTTTATT-TATTTTACATTTT
1 AGTCCAT-CAATTTATTAT-TTTTACAATTT
*
81261342 AGTCCCTCAATTTATTATTTTTACAATTT
1 AGTCCATCAATTTATTATTTTTACAATTT
81261371 AG
1 AG
81261373 CCCTTATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.52
Consensus pattern (29 bp):
AGTCCATCAATTTATTATTTTTACAATTT
Found at i:81262904 original size:48 final size:48
Alignment explanation
Indices: 81262829--81263148 Score: 369
Period size: 48 Copynumber: 6.7 Consensus size: 48
81262819 CTAAATGAGA
* * *
81262829 TTTC-GTGTAAGACCATGTCTGGGACATGGCAACGGCGATAATGTATG
1 TTTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATG
* *
81262876 TTTCAGTGTAAGACCATGTCTGGGACATGACATCGGCAATGATATATG
1 TTTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATG
** *** *
81262924 TGCCAGTGTAAGACCATGTCTGGGACATGGCATCTATGATGGTATATG
1 TTTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATG
** *
81262972 TGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATG
1 TTTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATG
* * * *
81263020 -TGCTAGTGTAAGACCATGTTTGGGACAAGGCATCGGTGATGATATATG
1 TTTC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATG
* * * *
81263068 -TGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATGTGG
1 TTTC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATAT-G
* *
81263117 ATTCA-TGTAAGACCATGTCGGGGACATGGCAT
1 TTTCAGTGTAAGACCATGTCTGGGACATGGCAT
81263149 TGGTACTTTA
Statistics
Matches: 237, Mismatches: 32, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
47 5 0.02
48 228 0.96
49 2 0.01
50 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
TTTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATG
Found at i:81262952 original size:96 final size:96
Alignment explanation
Indices: 81262833--81263148 Score: 411
Period size: 96 Copynumber: 3.3 Consensus size: 96
81262823 ATGAGATTTC
* * * * *
81262833 GTGTAAGACCATGTCTGGGACATGGCAACGGCGATAATGTATGTTTCAGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTTCCAGTGTAAGACCATGTCTG
*
81262898 GGACATGACATCGGCAATGATATATGTGCCA
66 GGACATGGCATCGGCAATGATATATGTGCCA
** * * *
81262929 GTGTAAGACCATGTCTGGGACATGGCATCTATGATGGTATATGTGCCAGTGTAAGACCATGTCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTTCCAGTGTAAGACCATGTCTG
* *
81262994 GGACATGGCATCGGCGATGATATATGTGCTA
66 GGACATGGCATCGGCAATGATATATGTGCCA
* * * *
81263025 GTGTAAGACCATGTTTGGGACAAGGCATCGGTGATGATATATGTGCTAGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTTCCAGTGTAAGACCATGTCTG
* * *
81263090 GGACATGGCATCGACAATGATATGTG-GATTCA
66 GGACATGGCATCGGCAATGATATATGTG--CCA
*
81263122 -TGTAAGACCATGTCGGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
81263149 TGGTACTTTA
Statistics
Matches: 190, Mismatches: 28, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
95 1 0.01
96 188 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTTCCAGTGTAAGACCATGTCTG
GGACATGGCATCGGCAATGATATATGTGCCA
Found at i:81263126 original size:144 final size:144
Alignment explanation
Indices: 81262833--81263148 Score: 424
Period size: 144 Copynumber: 2.2 Consensus size: 144
81262823 ATGAGATTTC
* * *
81262833 GTGTAAGACCATGTCTGGGACATGGCAACGGCGATAATGTATGTTTCAGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATATGTCTCAGTGTAAGACCATGTCTG
* * **
81262898 GGACATGACATCGGCAATGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCTATGA
66 GGACAAGACATCGGCAATGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACAA
81262963 TGGTATATGTGCCA
131 TGGTATATGTGCCA
* * *
81262977 GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATGTGCT-AGTGTAAGACCATGTTT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATATGT-CTCAGTGTAAGACCATGTCT
* ** *
81263041 GGGACAAGGCATCGGTGATGATATATGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACA
65 GGGACAAGACATCGGCAATGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACA
*
81263106 AT-G-ATATGTGGATTCA
130 ATGGTATATGT-G--CCA
*
81263122 -TGTAAGACCATGTCGGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
81263149 TGGTACTTTA
Statistics
Matches: 151, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
142 6 0.04
143 2 0.01
144 140 0.93
145 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (144 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATATGTCTCAGTGTAAGACCATGTCTG
GGACAAGACATCGGCAATGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACAA
TGGTATATGTGCCA
Found at i:81271707 original size:40 final size:40
Alignment explanation
Indices: 81271652--81271731 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
81271642 CCTTCTGGGT
81271652 TACTTCAGCCGATTAAGATTCTGATGTGGAAGTGGGAAAG
1 TACTTCAGCCGATTAAGATTCTGATGTGGAAGTGGGAAAG
*
81271692 TACTTCAGCCGATTAAGATTCTGATGTGGAAGTGGTAAAG
1 TACTTCAGCCGATTAAGATTCTGATGTGGAAGTGGGAAAG
81271732 AGTAACTATG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.12, G:0.29, T:0.29
Consensus pattern (40 bp):
TACTTCAGCCGATTAAGATTCTGATGTGGAAGTGGGAAAG
Found at i:81275101 original size:33 final size:35
Alignment explanation
Indices: 81275059--81275138 Score: 110
Period size: 33 Copynumber: 2.3 Consensus size: 35
81275049 TTATAGTGAT
*
81275059 ATGGGCTAAGGCCCAG-CTGCTTTTATCACTG-AA
1 ATGGGCTAAGGCCCAGACTGCTATTATCACTGAAA
* *
81275092 ATGGGCTAAGGCCCAGACTGCTATTGTTACTGAAA
1 ATGGGCTAAGGCCCAGACTGCTATTATCACTGAAA
*
81275127 AGGGGCTAAGGC
1 ATGGGCTAAGGC
81275139 TCCTAACTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 16 0.39
34 12 0.29
35 13 0.32
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (35 bp):
ATGGGCTAAGGCCCAGACTGCTATTATCACTGAAA
Found at i:81281000 original size:40 final size:39
Alignment explanation
Indices: 81280951--81281043 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 39
81280941 TAACAATCTT
*
81280951 GCACACTTAGTGTCTCA-TATAGCTAAAGCTATTCCAATTC
1 GCACACTTAGTGTCT-ATTATAGCCAAAGCTATTCCAA-TC
* **
81280991 GCACACTTAGTG-CTATTTATAGCCGAAGCTATTTGAATC
1 GCACACTTAGTGTCTA-TTATAGCCAAAGCTATTCCAATC
81281030 GCACACTTAGTGTC
1 GCACACTTAGTGTC
81281044 GAACATAGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
38 1 0.02
39 16 0.35
40 29 0.63
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (39 bp):
GCACACTTAGTGTCTATTATAGCCAAAGCTATTCCAATC
Found at i:81296630 original size:27 final size:27
Alignment explanation
Indices: 81296600--81296777 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81296590 ATATTGAGTC
* * * *
81296600 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
81296627 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81296654 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
81296682 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
81296709 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
81296736 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81296763 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81296778 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:81296739 original size:82 final size:81
Alignment explanation
Indices: 81296621--81296776 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81296611 TGCTATATAA
* *
81296621 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
81296686 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
81296703 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
81296767 CACTTAGTGC
65 CACTTAGTGC
81296777 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:81299396 original size:46 final size:46
Alignment explanation
Indices: 81299344--81299467 Score: 115
Period size: 46 Copynumber: 2.7 Consensus size: 46
81299334 CATAGCCGAT
*
81299344 ACATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGGCCGAAG
1 ACATGTCCCAAACATGTCTTACACTGGCTTA-GTCTCAAGGCCGAAG
*** * * * * *
81299391 -CATGTCCCAGTTATGTCTTACACTAGCACTAGTCTCAATGCTGATG
1 ACATGTCCCAAACATGTCTTACACTGGC-TTAGTCTCAAGGCCGAAG
**
81299437 ACATGTCTTAAACATAGTCTTACACTGGCTT
1 ACATGTCCCAAACAT-GTCTTACACTGGCTT
81299468 TCATAATGTG
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
46 34 0.59
47 12 0.21
48 12 0.21
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (46 bp):
ACATGTCCCAAACATGTCTTACACTGGCTTAGTCTCAAGGCCGAAG
Found at i:81301992 original size:34 final size:34
Alignment explanation
Indices: 81301896--81302003 Score: 108
Period size: 34 Copynumber: 3.2 Consensus size: 34
81301886 TGACATGGTT
* *
81301896 ATAACATATAAATATGGTAGCAATTAATATGCTC
1 ATAACAGATCAATATGGTAGCAATTAATATGCTC
* * * * * * *
81301930 ATAAAAGTTCGATGTGGTAACAAATAATATGGTC
1 ATAACAGATCAATATGGTAGCAATTAATATGCTC
* * *
81301964 ATAACAGATCAATATAGTGGCAATTAATATGCTT
1 ATAACAGATCAATATGGTAGCAATTAATATGCTC
81301998 ATAACA
1 ATAACA
81302004 AATTAGTGCA
Statistics
Matches: 55, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
34 55 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.31
Consensus pattern (34 bp):
ATAACAGATCAATATGGTAGCAATTAATATGCTC
Found at i:81304500 original size:19 final size:19
Alignment explanation
Indices: 81304464--81304504 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
81304454 TTTAAAAAGA
***
81304464 TTTTTATAATTTTTATACT
1 TTTTTATAATTAAAATACT
81304483 TTTTTATAATTAAAATACT
1 TTTTTATAATTAAAATACT
81304502 TTT
1 TTT
81304505 GAAATTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTTATAATTAAAATACT
Found at i:81304661 original size:13 final size:13
Alignment explanation
Indices: 81304643--81304668 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81304633 GTTTAACAAG
81304643 TAAAAAATAAAAA
1 TAAAAAATAAAAA
81304656 TAAAAAATAAAAA
1 TAAAAAATAAAAA
81304669 AATTAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:81309290 original size:131 final size:130
Alignment explanation
Indices: 81309023--81309477 Score: 693
Period size: 131 Copynumber: 3.5 Consensus size: 130
81309013 AATGAAAAAC
* * * * * * * *
81309023 CGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTTCGAACATTGAACATTGCCTCGCTTTAG
1 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTTTTAG
* * **
81309088 CATTT----AGAAAACACGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAA
66 CGTTTGGAAAAAAAACACGAGT-AAATTTTAAAGGAATATTCGATTATTTTGAACAAACGGGAAA
81309149 T
130 T
*
81309150 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTTCAAACATCGAACATTGCCTTGTTTTAG
1 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTTTTAG
*
81309215 CGTTTGGAAAAAAAACACGAGTAAATTTTTAAAGGAATATTCGATTATTTTGAACAAGCGGGAAA
66 CGTTTGGAAAAAAAACACGAGTAAA-TTTTAAAGGAATATTCGATTATTTTGAACAAACGGGAAA
81309280 T
130 T
81309281 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTTTTAG
1 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTTTTAG
* *
81309346 AGTTTGGAAAAAAAACACGAGTAAAATTTTAAAGGAATATTCGATTATTTTGAACAAACAGGAAA
66 CGTTTGGAAAAAAAACACGAGT-AAATTTTAAAGGAATATTCGATTATTTTGAACAAACGGGAAA
81309411 T
130 T
*
81309412 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTACCTTTGTTTTA
1 CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTGCC-TTGTTTTA
81309477 G
65 G
81309478 TGAATCTTCA
Statistics
Matches: 304, Mismatches: 17, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
127 62 0.20
130 3 0.01
131 227 0.75
132 12 0.04
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (130 bp):
CGAAACCCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTGCCTTGTTTTAG
CGTTTGGAAAAAAAACACGAGTAAATTTTAAAGGAATATTCGATTATTTTGAACAAACGGGAAAT
Found at i:81311255 original size:36 final size:36
Alignment explanation
Indices: 81311203--81311274 Score: 137
Period size: 35 Copynumber: 2.0 Consensus size: 36
81311193 ATGAAAGAGG
81311203 AAAATCAGAGAGAAAAAAAG-ATGAACCACCTTGAA
1 AAAATCAGAGAGAAAAAAAGAATGAACCACCTTGAA
81311238 AAAATCAGAGAGAAAAAAAGAATGAACCACCTTGAA
1 AAAATCAGAGAGAAAAAAAGAATGAACCACCTTGAA
81311274 A
1 A
81311275 TCTTTCTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 20 0.56
36 16 0.44
ACGTcount: A:0.58, C:0.14, G:0.17, T:0.11
Consensus pattern (36 bp):
AAAATCAGAGAGAAAAAAAGAATGAACCACCTTGAA
Found at i:81311992 original size:20 final size:20
Alignment explanation
Indices: 81311967--81312005 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
81311957 CCAATGATCG
81311967 ATTAAAT-ATCTAATTATCAA
1 ATTAAATAAT-TAATTATCAA
81311987 ATTAAATAATTAATTATCA
1 ATTAAATAATTAATTATCA
81312006 TCGATTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATTAAATAATTAATTATCAA
Found at i:81316250 original size:17 final size:17
Alignment explanation
Indices: 81316216--81316267 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
81316206 TCCTGATTTA
81316216 TTTATTTATTCTATTTTTC
1 TTTATTTATT-TA-TTTTC
81316235 TTTATTTATTTATTTTC
1 TTTATTTATTTATTTTC
* *
81316252 GTTATTTATTTGTTTT
1 TTTATTTATTTATTTT
81316268 TATTCTCTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 19 0.61
18 2 0.06
19 10 0.32
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (17 bp):
TTTATTTATTTATTTTC
Found at i:81319284 original size:87 final size:87
Alignment explanation
Indices: 81319141--81319304 Score: 256
Period size: 87 Copynumber: 1.9 Consensus size: 87
81319131 AACTCACTCA
* ** * *
81319141 GAAAATGGGAAGGGAAAGTAAAGAGAGAAAAGATTGAAAGAAGGATGAATGTGGAATGATGAGAT
1 GAAAATAGGAAGGGAAAGTAAAGAGAGAAAAGAGAGAAAGAAGGATGAATGGGGAATGATGAAAT
81319206 AAGAGAGTGAGGAAATCACTTG
66 AAGAGAGTGAGGAAATCACTTG
*
81319228 GAAAATAGGAAGGGAAAGTAAAGAGAGAAAAGAGAGAAAGATGGATGAATGGGGAATGATGAAAT
1 GAAAATAGGAAGGGAAAGTAAAGAGAGAAAAGAGAGAAAGAAGGATGAATGGGGAATGATGAAAT
* *
81319293 GAGGGAGTGAGG
66 AAGAGAGTGAGG
81319305 GATGGTATTT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 69 1.00
ACGTcount: A:0.48, C:0.01, G:0.37, T:0.14
Consensus pattern (87 bp):
GAAAATAGGAAGGGAAAGTAAAGAGAGAAAAGAGAGAAAGAAGGATGAATGGGGAATGATGAAAT
AAGAGAGTGAGGAAATCACTTG
Found at i:81325517 original size:13 final size:13
Alignment explanation
Indices: 81325485--81325511 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81325475 GTGAGAGTCT
81325485 AACTATACATGCC
1 AACTATACATGCC
81325498 AACTATACATGCC
1 AACTATACATGCC
81325511 A
1 A
81325512 TATATAGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.30, G:0.07, T:0.22
Consensus pattern (13 bp):
AACTATACATGCC
Found at i:81328289 original size:49 final size:49
Alignment explanation
Indices: 81328230--81328461 Score: 266
Period size: 49 Copynumber: 4.7 Consensus size: 49
81328220 CTGGTACGCA
* * *
81328230 TAGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * * ** * *
81328279 TAGCATCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * *
81328329 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* *
81328380 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* *
81328429 TCGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
81328462 TCACAATAGA
Statistics
Matches: 151, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 68 0.45
50 45 0.30
51 38 0.25
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:81328453 original size:100 final size:99
Alignment explanation
Indices: 81328230--81328461 Score: 279
Period size: 100 Copynumber: 2.3 Consensus size: 99
81328220 CTGGTACGCA
* * * ** *
81328230 TAGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCCGGTACATGTAGCATCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGCAGCCTGCACTTA
* *
81328295 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCAGATACACG
* * * *
81328329 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGCAGCCTGCACT
* **
81328394 TAGTACTACACATGCGACC-AATTATCCAG-TACACG
64 TAGTACTACACACGCGACCTAACCAT-CAGATACACG
*
81328429 TCGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
81328462 TCACAATAGA
Statistics
Matches: 113, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
99 29 0.26
100 43 0.38
101 41 0.36
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGCAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCAGATACACG
Found at i:81333459 original size:27 final size:28
Alignment explanation
Indices: 81333356--81333468 Score: 97
Period size: 28 Copynumber: 3.9 Consensus size: 28
81333346 CTATTCAAAA
* *
81333356 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCCATAGCCCAT
* *
81333383 ATCAGTATTAATCTGGGCCATAACCCCT
1 ATCAGTATTAATCTGGGCCATAGCCCAT
*
81333411 -TACAGTAATAGAGTATACTGGGCC-TAGCCCAT
1 AT-CAGT-AT-TA--AT-CTGGGCCATAGCCCAT
*
81333443 ATCAGTATTAATCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCCATAGCCC
81333469 TATTACAAGT
Statistics
Matches: 69, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
27 18 0.26
28 25 0.36
29 2 0.03
30 2 0.03
31 2 0.03
32 12 0.17
33 8 0.12
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (28 bp):
ATCAGTATTAATCTGGGCCATAGCCCAT
Found at i:81333493 original size:60 final size:60
Alignment explanation
Indices: 81333366--81333506 Score: 178
Period size: 60 Copynumber: 2.3 Consensus size: 60
81333356 ATCAGTGTTA
* *
81333366 ACTGGGCCTTAGCCCATATCAGTATTAATCTGGGCCATAACCCCTTACAGTAATAGAGTAT
1 ACTGGGCC-TAGCCCATATCAGTATTAATCTGGGCCATAACCCATTACAGTAAGAGAGTAT
* * *
81333427 ACTGGGCCTAGCCCATATCAGTATTAATCTGGGCCGTAGCCCTATTACAAGT-CGAGA-TAT
1 ACTGGGCCTAGCCCATATCAGTATTAATCTGGGCCATAACCC-ATTAC-AGTAAGAGAGTAT
* *
81333487 ATTGGGCCTTGCCCATATCA
1 ACTGGGCCTAGCCCATATCA
81333507 ACACAGTTGG
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
60 53 0.75
61 15 0.21
62 3 0.04
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
ACTGGGCCTAGCCCATATCAGTATTAATCTGGGCCATAACCCATTACAGTAAGAGAGTAT
Found at i:81336032 original size:28 final size:25
Alignment explanation
Indices: 81336001--81336053 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
81335991 ATAATGAAAA
81336001 TTTCAAATACGATAATATATATATATTT
1 TTTCAAATA--ATAATATATATA-ATTT
* *
81336029 TTTCTAATAATAATATTTATAATTT
1 TTTCAAATAATAATATATATAATTT
81336054 CCATAAATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 4 0.17
26 11 0.48
28 8 0.35
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.51
Consensus pattern (25 bp):
TTTCAAATAATAATATATATAATTT
Found at i:81336919 original size:16 final size:16
Alignment explanation
Indices: 81336895--81336925 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81336885 AAGTTTGAGA
81336895 TTTCAGGATTTTTGGC
1 TTTCAGGATTTTTGGC
*
81336911 TTTCGGGATTTTTGG
1 TTTCAGGATTTTTGG
81336926 GGCGTTACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.29, T:0.52
Consensus pattern (16 bp):
TTTCAGGATTTTTGGC
Found at i:81338543 original size:14 final size:15
Alignment explanation
Indices: 81338515--81338552 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
81338505 ATGTTTCACC
81338515 TCCTTCGTT-CTCTTT
1 TCCTTC-TTCCTCTTT
81338530 TCC-TCTTCCTCTTT
1 TCCTTCTTCCTCTTT
81338544 TCCTTCTTC
1 TCCTTCTTC
81338553 TTGTTTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.00, C:0.39, G:0.03, T:0.58
Consensus pattern (15 bp):
TCCTTCTTCCTCTTT
Found at i:81341760 original size:393 final size:393
Alignment explanation
Indices: 81341035--81342123 Score: 2142
Period size: 393 Copynumber: 2.8 Consensus size: 393
81341025 GATGTCAACT
81341035 TCTATTATGCTCAATCACTTTACACATATGAAACATTTCCAATAACCAAACCGAATATCAAACAT
1 TCTATTATGCTCAATCACTTTACACATATGAAACATTTCCAATAACCAAACCGAATATCAAACAT
*
81341100 ATTATTTTAACCTTCACACCAAAACATCAATTATTTTTATATATATATTGATACAATACATATTA
66 ATTATTTTAACCTTCACACCAAAACATCAATTATATTTATATATATATTGATACAATACATATTA
81341165 ACTATTCGTCCAACATTTTAGCATACCAACTAAAATTTTAACATGCTATTATCACACATCAATCA
131 ACTATTCGTCCAACATTTTAGCATACCAACTAAAATTTTAACATGCTATTATCACACATCAATCA
81341230 AATTAGCAAAAATCATATTCAAAACTAATTTAATAGCCACATATTCGGCTAAATATATATAAATC
196 AATTAGCAAAAATCATATTCAAAACTAATTTAATAGCCACATATTCGGCTAAATATATATAAATC
81341295 TATATAGTCAGAACAATCCAACTTTAATAACAAATACAAGACACCTCAAATATTTAACAGCCACC
261 TATATAGTCAGAACAATCCAACTTTAATAACAAATACAAGACACCTCAAATATTTAACAGCCACC
81341360 GAAAGTTAATTCACCTATTTGCCAAATCCAAACATGGTTGTTTCTCAAGCTTTTCATTACACCTA
326 GAAAGTTAATTCACCTATTTGCCAAATCCAAACATGGTTGTTTCTCAAGCTTTTCATTACACCTA
81341425 AAA
391 AAA
81341428 TCTATTATGCTCAATCACTTTACACATATGAAACATTTCCAATAACCAAACCGAATATCAAACAT
1 TCTATTATGCTCAATCACTTTACACATATGAAACATTTCCAATAACCAAACCGAATATCAAACAT
81341493 ATTATTTTAACCTTCACACCAAAACATCAATTATATTTATATATATATTGATACAATACATATTA
66 ATTATTTTAACCTTCACACCAAAACATCAATTATATTTATATATATATTGATACAATACATATTA
81341558 ACTATTCGTCCAACATTTTAGCATACCAACTAAAATTTTAACATGCTATTATCACACATCAATCA
131 ACTATTCGTCCAACATTTTAGCATACCAACTAAAATTTTAACATGCTATTATCACACATCAATCA
81341623 AATTAGCAAAAATCATATTCAAAACTAATTTAATAGCCACATATTCGGCTAAATATATATAAATC
196 AATTAGCAAAAATCATATTCAAAACTAATTTAATAGCCACATATTCGGCTAAATATATATAAATC
81341688 TATATAGTCAGAACAATCCAACTTTAATAACAAATACAAGACACCTCAAATATTTAACAGCCACC
261 TATATAGTCAGAACAATCCAACTTTAATAACAAATACAAGACACCTCAAATATTTAACAGCCACC
81341753 GAAAGTTAATTCACCTATTTGCCAAATCCAAACATGGTTGTTTCTCAAGCTTTTCATTACACCTA
326 GAAAGTTAATTCACCTATTTGCCAAATCCAAACATGGTTGTTTCTCAAGCTTTTCATTACACCTA
81341818 AAA
391 AAA
81341821 TCTATTATGCTCAATCACTTTACACATATGAAACATTTCCAATAACCAAACCGAATATCAAACAT
1 TCTATTATGCTCAATCACTTTACACATATGAAACATTTCCAATAACCAAACCGAATATCAAACAT
81341886 ATTATTTTAACCTTCACACCAAAACATCAATTATATTTATATATATATTGATACAATACATATTA
66 ATTATTTTAACCTTCACACCAAAACATCAATTATATTTATATATATATTGATACAATACATATTA
* *
81341951 ACTATTCGTCCAACATTTTAGCATACCAACTAAATTTTTAACATGCTATTATCACATATCAATCA
131 ACTATTCGTCCAACATTTTAGCATACCAACTAAAATTTTAACATGCTATTATCACACATCAATCA
*
81342016 AATTAGCAAAAATCATATTCAAAACTAATTTAATAGCCACATATTCGGCTATATATATATAAATC
196 AATTAGCAAAAATCATATTCAAAACTAATTTAATAGCCACATATTCGGCTAAATATATATAAATC
81342081 TATATAGTCAGAACAATCCAACTTTAATAACAAATACAAGACA
261 TATATAGTCAGAACAATCCAACTTTAATAACAAATACAAGACA
81342124 TTTTTCGTAT
Statistics
Matches: 692, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
393 692 1.00
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.32
Consensus pattern (393 bp):
TCTATTATGCTCAATCACTTTACACATATGAAACATTTCCAATAACCAAACCGAATATCAAACAT
ATTATTTTAACCTTCACACCAAAACATCAATTATATTTATATATATATTGATACAATACATATTA
ACTATTCGTCCAACATTTTAGCATACCAACTAAAATTTTAACATGCTATTATCACACATCAATCA
AATTAGCAAAAATCATATTCAAAACTAATTTAATAGCCACATATTCGGCTAAATATATATAAATC
TATATAGTCAGAACAATCCAACTTTAATAACAAATACAAGACACCTCAAATATTTAACAGCCACC
GAAAGTTAATTCACCTATTTGCCAAATCCAAACATGGTTGTTTCTCAAGCTTTTCATTACACCTA
AAA
Found at i:81344957 original size:40 final size:40
Alignment explanation
Indices: 81344864--81345120 Score: 322
Period size: 40 Copynumber: 6.5 Consensus size: 40
81344854 AAGCCAAGTA
* * * *
81344864 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAAATG
* * *
81344902 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* *
81344942 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * *
81344982 CCTTCGGGACTCAGCCCGGATGTAATAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* *
81345022 CCTTCGGGACTTAGCCCGGTTGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * * *
81345062 CCTTCGAGACTTAGCCCGGTTGTAATAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
81345102 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81345121 TTATCATCCG
Statistics
Matches: 197, Mismatches: 19, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
38 12 0.06
39 16 0.08
40 169 0.86
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
Found at i:81345122 original size:40 final size:40
Alignment explanation
Indices: 81344890--81345120 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
81344880 GGATATAGCT
* * * *
81344890 ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
* * *
81344929 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
* *
81344969 GCTCGCACAAATGCCTTCGGGACTCAGCCCGGATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
* *
81345009 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGTTGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
* *
81345049 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGTTGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
*
81345089 ACTCGCACAAATACCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
81345121 TTATCATCCG
Statistics
Matches: 176, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 7 0.04
40 169 0.96
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
Found at i:81346715 original size:39 final size:40
Alignment explanation
Indices: 81346670--81346837 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
81346660 CGGGGTTTAG
* * *
81346670 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
81346709 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
81346749 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
81346789 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
81346830 CCGGATAT
1 CCGGATAT
81346838 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:81346820 original size:41 final size:40
Alignment explanation
Indices: 81346693--81346837 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
81346683 CTCGCACAAG
* * * * *
81346693 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
81346733 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
81346773 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
81346814 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
81346838 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:81352383 original size:24 final size:24
Alignment explanation
Indices: 81352351--81352401 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
81352341 TTGCGTCAAG
81352351 ATTGTGCACCATCTTCTTCATCAT
1 ATTGTGCACCATCTTCTTCATCAT
*
81352375 ATTGTGCACCATCTTTTTCATCAT
1 ATTGTGCACCATCTTCTTCATCAT
81352399 ATT
1 ATT
81352402 TATTTAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.25, G:0.08, T:0.45
Consensus pattern (24 bp):
ATTGTGCACCATCTTCTTCATCAT
Found at i:81356148 original size:11 final size:11
Alignment explanation
Indices: 81356132--81356157 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
81356122 AGATTCGGGT
81356132 TTCTTTTCTAA
1 TTCTTTTCTAA
81356143 TTCTTTTCTAA
1 TTCTTTTCTAA
81356154 TTCT
1 TTCT
81356158 GGTATTCACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.19, G:0.00, T:0.65
Consensus pattern (11 bp):
TTCTTTTCTAA
Found at i:81359424 original size:40 final size:40
Alignment explanation
Indices: 81359374--81359546 Score: 215
Period size: 40 Copynumber: 4.3 Consensus size: 40
81359364 GCTCCTCGTT
* * *
81359374 CAAATGCCTTCGGGACATAGCCCGGTTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
*
81359415 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
81359454 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
81359494 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
81359534 CAAATGCCTTCGG
1 CAAATGCCTTCGG
81359547 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 13 0.11
40 101 0.85
41 5 0.04
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:81359559 original size:80 final size:79
Alignment explanation
Indices: 81359374--81359599 Score: 233
Period size: 80 Copynumber: 2.8 Consensus size: 79
81359364 GCTCCTCGTT
* * * * *
81359374 CAAATGCCTTCGGGACATAGCCCGGTTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGG
81359439 -ATTTAATAACTCGCA
64 AATTTAATAACTCGCA
* * *
81359454 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
81359519 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
81359534 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
81359598 GA
63 GA
81359600 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
78 1 0.01
79 17 0.14
80 91 0.75
81 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:81359608 original size:41 final size:41
Alignment explanation
Indices: 81359531--81359608 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
81359521 TTTGTATCTC
* * *
81359531 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
81359572 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
81359609 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:81360523 original size:48 final size:48
Alignment explanation
Indices: 81360452--81360546 Score: 181
Period size: 48 Copynumber: 2.0 Consensus size: 48
81360442 TCGGTTTAGC
81360452 GGTCCCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCACAGT
1 GGTCCCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCACAGT
*
81360500 GGTCCCGAAATCACTTCCCGACTAGGGTCAACTTTGGGCTGTCACAG
1 GGTCCCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCACAG
81360547 AGGAAGCGAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (48 bp):
GGTCCCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCACAGT
Found at i:81360557 original size:48 final size:48
Alignment explanation
Indices: 81360456--81360557 Score: 159
Period size: 48 Copynumber: 2.1 Consensus size: 48
81360446 TTTAGCGGTC
* **
81360456 CCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCACAGTGGTC
1 CCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCACAGAGGAA
*
81360504 CCGAAATCACTTCCCGACTAGGGTCAACTTTGGGCTGTCACAGAGGAA
1 CCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCACAGAGGAA
*
81360552 GCGAAA
1 CCGAAA
81360558 AATAAGGTGT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (48 bp):
CCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCACAGAGGAA
Found at i:81382511 original size:40 final size:40
Alignment explanation
Indices: 81382454--81382594 Score: 196
Period size: 40 Copynumber: 3.5 Consensus size: 40
81382444 TTGAATGATG
81382454 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACCATA
* * *
81382494 TCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACTATA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACCATA
*
81382534 TCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATA
* *
81382574 TCCGGGTTAAGACCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
81382595 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 79 0.89
41 9 0.10
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATA
Found at i:81385494 original size:44 final size:43
Alignment explanation
Indices: 81385446--81386777 Score: 185
Period size: 45 Copynumber: 30.2 Consensus size: 43
81385436 GCCACCAGCT
*
81385446 TTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAGTC
* * *
81385490 TTATCT-TCCTAAGGTAGCAAGGAAGCAAACT-AAGGATTAAAGATC
1 TTATCTCT-CTAAGGTAGCAAGG-AGCAGATTGAA-GATTGAAG-TC
* * **
81385535 TTATCTCTCTAA-GTAG-TAGTAGAGCAGATTGAAGATGGCAAACC
1 TTATCTCTCTAAGGTAGCAAG--GAGCAGATTGAAGATTG-AAGTC
* ** ** ** *
81385579 TTA--TCTCT-ATGTATCGGCAATGGAGCAGATTTTAGCCTCCAGCC
1 TTATCTCTCTAAGGTA---GCAA-GGAGCAGATTGAAGATTGAAGTC
* *
81385623 TTATCTCTCTAAGGTAGCAAGAGCGCAGGTTGAAGATTG-AGTC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAGTC
* *
81385666 TTATCT-TCATAGGGTAGCAAGGAAGCAAATTGAAGATTGAAGGTC
1 TTATCTCTC-TAAGGTAGCAAGG-AGCAGATTGAAGATTGAA-GTC
* * ** * *
81385711 TTATCTCCCTAAAGTTA-C-AGCAGAGCAGATCAAAAATGGCTAA-TC
1 TTATCTCTCT-AAGGTAGCAAG--GAGCAGATTGAAGATTG--AAGTC
* * * * * *** *
81385756 TTAT-T-TCCATGTATTAGCAATGGAGCAGATTTAAGCTACTA-CC
1 TTATCTCTCTAAG--GTAGCAA-GGAGCAGATTGAAGATTGAAGTC
* *
81385799 TTA--TCTCTGAGGTAGCAAGAGAGCA-ATTTGAATATTG-AGTC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGA-TTGAAGATTGAAGTC
* *
81385840 TTATCT-TCCTAAGGTAGCAAGGAAGCAGACTGAAGATGGAAGATC
1 TTATCTCT-CTAAGGTAGCAAGG-AGCAGATTGAAGATTGAAG-TC
* * * * *
81385885 TAAGCTAC-C-AAGCAGTAG--TGGAGCAGATCGAAGATGGTGAA-CC
1 TTATCT-CTCTAAG--GTAGCAAGGAGCAGATTGAAGAT--TGAAGTC
* * * * * ***** *
81385928 TTCTCTCCATGTATCGGTA--ATGGAGCAGATTTAAGCCACCAGCC
1 TTATCT-C-TCTA-AGGTAGCAAGGAGCAGATTGAAGATTGAAGTC
* * *
81385972 TTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-AGTC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAGTC
* * * * *
81386015 TTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGAAGATC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAG-TC
* * **
81386060 TTATCTCTCTGAA-GTTGCAGCGGAGCAGACCGAAGATGGTGAA-TC
1 TTATCTCTCT-AAGGTAGCA-AGGAGCAGATTGAAGAT--TGAAGTC
* * * * ***** *
81386105 TTATCTC-C--ATGTATTGGCAGTGGATCAGATTTAAGCCACCAGCC
1 TTATCTCTCTAAGGTA---GCA-AGGAGCAGATTGAAGATTGAAGTC
* * *
81386149 TTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-AGTC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAGTC
* * * * *
81386192 TTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGAAGATC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAG-TC
* * **
81386237 TTATCTCTCTGAA-GTTGCAGCGGAGCAGACCGAAGATGGTGAA-TC
1 TTATCTCTCT-AAGGTAGCA-AGGAGCAGATTGAAGAT--TGAAGTC
* * * * ***** *
81386282 TTATCTC-C--ATGTATTGGCAGTGGATCAGATTTAAGCCACCAGCC
1 TTATCTCTCTAAGGTA---GCA-AGGAGCAGATTGAAGATTGAAGTC
* * *
81386326 TTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-AGTC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAGTC
* * * * *
81386369 TTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGAAGATC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAG-TC
* * **
81386414 TTATCTCTCTGAA-GTTGCAGCGGAGCAGACCGAAGATGGTGAA-TC
1 TTATCTCTCT-AAGGTAGCA-AGGAGCAGATTGAAGAT--TGAAGTC
* * * * ***** *
81386459 TTATCTC-C--ATGTATTGGCAGTGGATCAGATTTAAGCCACCAGCC
1 TTATCTCTCTAAGGTA---GCA-AGGAGCAGATTGAAGATTGAAGTC
* * *
81386503 TTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-AGTC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAGTC
* * * * *
81386546 TTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGAAGATC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAG-TC
* * **
81386591 TTATCTCTCTGAA-GTTGCAGCGGAGCAGACCGAAGATGGTGAA-TC
1 TTATCTCTCT-AAGGTAGCA-AGGAGCAGATTGAAGAT--TGAAGTC
* * * * ***** *
81386636 TTATCTC-C--ATGTATTGGCAGTGGATCAGATTTAAGCCACCAGCC
1 TTATCTCTCTAAGGTA---GCA-AGGAGCAGATTGAAGATTGAAGTC
* * *
81386680 TTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-AGTC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAGTC
* * * * *
81386723 TTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGAAGATC
1 TTATCTCTCTAAGGTAGCAAG-GAGCAGATTGAAGATTGAAG-TC
81386768 TTATCTCTCT
1 TTATCTCTCT
81386778 GAAGTTGCAG
Statistics
Matches: 921, Mismatches: 245, Indels: 243
0.65 0.17 0.17
Matches are distributed among these distances:
40 3 0.00
41 29 0.03
42 26 0.03
43 282 0.31
44 199 0.22
45 318 0.35
46 27 0.03
47 37 0.04
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (43 bp):
TTATCTCTCTAAGGTAGCAAGGAGCAGATTGAAGATTGAAGTC
Found at i:81385738 original size:177 final size:177
Alignment explanation
Indices: 81385352--81387025 Score: 2400
Period size: 177 Copynumber: 9.5 Consensus size: 177
81385342 GGGTGAAGTC
* * * * * * *
81385352 AGATCTTATCTCCCTGAAGTTGTAGCAGAGCAGATCGAAGATGGCGAATCTTATCTCCGTGTATC
1 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
* * *
81385417 GGCAATGGAGCAAATTTAAGCCACCAGCTTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGA
66 GGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * * * * **
81385482 TTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAAACT-AAGGATTAA
131 ATG-AGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAA-GATGGA
* * ** ** ** * * *
81385530 AGATCTTATCTCTCT-AAGTAGTAGTAGAGCAGATTGAAGATGGCAAACCTTATCTCTATGTATC
1 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
* * * *
81385594 GGCAATGGAGCAGATTTTAGCCTCCAGCCTTATCTCTCTAAGGTAGCAAGAGCGCAGGTTGAAGA
66 GGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * * * *
81385659 TTGAGTCTTATC-TTCAT-AGGGTAGCAAGGAAGCAAATTGAAGATTGA
131 ATGAGTCTTATCTTTC-TGA-GGTAGCAAGAAAGCAGACTGAAGATGGA
* * * * * * * * *
81385706 AGGTCTTATCTCCCTAAAGTTACAGCAGAGCAGATCAAAAATGGCT-AATCTTATTTCCATGTAT
1 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGG-TGAATCTTATCTCCATGTAT
* * * ** *
81385770 TAGCAATGGAGCAGATTTAAGCTACTA-CCTTA--TCTCTGAGGTAGCAAGAGAGCAATTTGAAT
65 TGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
* * * *
81385832 ATTGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATGGA
130 AATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
* * ** * * * * *
81385880 AGATCTAAGCTAC-C--AAGCAGTAGTGGAGCAGATCGAAGATGGTGAACCTTCTCTCCATGTAT
1 AGATCTTATCT-CTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTAT
* *
81385942 CGGTAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
65 TGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
81386007 AATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
130 AATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
81386055 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
1 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
* *
81386120 GGCAGTGGATCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
66 GGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
81386185 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
131 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
81386232 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
1 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
* *
81386297 GGCAGTGGATCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
66 GGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
81386362 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
131 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
81386409 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
1 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
* *
81386474 GGCAGTGGATCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
66 GGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
81386539 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
131 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
81386586 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
1 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
* *
81386651 GGCAGTGGATCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
66 GGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
81386716 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
131 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
81386763 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
1 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
* *
81386828 GGCAGTGGATCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
66 GGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * * * *
81386893 ATGAGTCTTATCTTTTTGAGGTAGCAAGGAAGTAGACTAAAGATTGA
131 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
* * * * **
81386940 AGATTTTATCTCTCTGAAGTTACAGCGGAGTAGATCGAAAGA-GGCAAATCTTATCTCCATGTAT
1 AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCG-AAGATGGTGAATCTTATCTCCATGTAT
*
81387004 CGGCAATGGAGCAGATTTAAGC
65 TGGCAATGGAGCAGATTTAAGC
81387026 TCCAAGATTT
Statistics
Matches: 1383, Mismatches: 97, Indels: 33
0.91 0.06 0.02
Matches are distributed among these distances:
171 1 0.00
172 57 0.04
173 5 0.00
174 74 0.05
175 88 0.06
176 51 0.04
177 1089 0.79
178 18 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (177 bp):
AGATCTTATCTCTCTGAAGTTGCAGCGGAGCAGACCGAAGATGGTGAATCTTATCTCCATGTATT
GGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATGGA
Found at i:81388961 original size:41 final size:40
Alignment explanation
Indices: 81388911--81388987 Score: 136
Period size: 41 Copynumber: 1.9 Consensus size: 40
81388901 ATATTTTTTT
81388911 AAAAATTATCTTAATTGTATAGATATTGTCAAGTTTTTAAA
1 AAAAATTATCTTAATTGTATAGATATTGTCAA-TTTTTAAA
*
81388952 AAAAATTATCTTTATTGTATAGATATTGTCAATTTT
1 AAAAATTATCTTAATTGTATAGATATTGTCAATTTT
81388988 AAATAAATGT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
40 4 0.11
41 31 0.89
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (40 bp):
AAAAATTATCTTAATTGTATAGATATTGTCAATTTTTAAA
Found at i:81397889 original size:27 final size:27
Alignment explanation
Indices: 81397858--81398230 Score: 457
Period size: 27 Copynumber: 13.8 Consensus size: 27
81397848 TTAGTTTACC
*
81397858 AATTACTGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* *
81397885 AATTACCGTTTTACCCTCGATTTGTAA
1 AATTACCGTTTTACCCTCGATTTATAG
*
81397912 AATTACTGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* * *
81397939 AATTACTGTTTTACCCTCGATTTGTAA
1 AATTACCGTTTTACCCTCGATTTATAG
81397966 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* *
81397993 AATTACCGTTTTACCCTC-AGTTTACAA
1 AATTACCGTTTTACCCTCGA-TTTATAG
*
81398020 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
81398047 AATTACCATTTTACCCTC-AGTTTATAG
1 AATTACCGTTTTACCCTCGA-TTTATAG
*
81398074 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAG
* *
81398101 AATTACCGTTTTACCATC-AGTTTACAG
1 AATTACCGTTTTACCCTCGA-TTTATAG
*** *
81398128 AATTATTATTTTACCCTTGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* * * *
81398155 AATTACTGGTTTACCCTC-AGTTTACAA
1 AATTACCGTTTTACCCTCGA-TTTATAG
* *
81398182 AATTATCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAG
*
81398209 AATTACCGTTTTACCCTTGATT
1 AATTACCGTTTTACCCTCGATT
81398231 GTGAAATTAC
Statistics
Matches: 301, Mismatches: 37, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
26 4 0.01
27 293 0.97
28 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTATAG
Found at i:81398047 original size:108 final size:108
Alignment explanation
Indices: 81397858--81398225 Score: 542
Period size: 108 Copynumber: 3.4 Consensus size: 108
81397848 TTAGTTTACC
* * ** *
81397858 AATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-GATTTGTAAAATTACTGTT
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAAAATTACTATT
*
81397922 TTACCCTCGATTTATAGAATTACTGTTTTACCCTC-GATTTGTAA
65 TTACCCTCGATTTATAGAATTACTGTTTTACCCTCAG-TTTATAA
* *
81397966 AATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCATTT
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTATTT
** *
81398031 TACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTATAG
66 TACCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTATAA
* * *
81398074 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCATCAGTTTACAGAATTATTATTT
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTATTT
* * *
81398139 TACCCTTGATTTATAGAATTACTGGTTTACCCTCAGTTTACAA
66 TACCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTATAA
*
81398182 AATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
81398226 TGATTGTGAA
Statistics
Matches: 236, Mismatches: 22, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
108 234 0.99
109 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.41
Consensus pattern (108 bp):
AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTATTT
TACCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTATAA
Found at i:81398272 original size:27 final size:27
Alignment explanation
Indices: 81398235--81398430 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
81398225 TTGATTGTGA
*
81398235 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
81398262 AGTTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
81398289 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
81398316 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
81398343 AATTATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
81398370 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
81398397 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
81398424 AATTACC
1 AATTACC
81398431 ATTTTGCCCT
Statistics
Matches: 142, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:81398640 original size:27 final size:26
Alignment explanation
Indices: 81398602--81398688 Score: 120
Period size: 27 Copynumber: 3.3 Consensus size: 26
81398592 CGGAGGAAGC
*
81398602 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
81398629 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
81398655 GTATCTGGTGACTCTGTCACGATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
81398682 GTTCTGG
1 GTTCTGG
81398689 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 14 0.25
27 41 0.75
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:81398815 original size:6 final size:6
Alignment explanation
Indices: 81398806--81398907 Score: 95
Period size: 6 Copynumber: 16.8 Consensus size: 6
81398796 TTGCATTCAC
* * *
81398806 ATTCTG ATTCTG ATTCT- ATCACGTA ATTCTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
*
81398855 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCT- ATTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
81398903 ATTCT
1 ATTCT
81398908 CATTTTGGTT
Statistics
Matches: 82, Mismatches: 5, Indels: 18
0.78 0.05 0.17
Matches are distributed among these distances:
5 8 0.10
6 65 0.79
7 6 0.07
8 3 0.04
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:81398868 original size:24 final size:24
Alignment explanation
Indices: 81398831--81398907 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
81398821 CTATCACGTA
*
81398831 ATTCTAATTCTGATTCTGATTCTG
1 ATTCTAATACTGATTCTGATTCTG
*
81398855 -TTACTAATATTGATTCTGATTCTG
1 ATT-CTAATACTGATTCTGATTCTG
*
81398879 ATTCTATTACTGATTCTGATTCTG
1 ATTCTAATACTGATTCTGATTCTG
81398903 ATTCT
1 ATTCT
81398908 CATTTTGGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
23 2 0.04
24 43 0.91
25 2 0.04
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.51
Consensus pattern (24 bp):
ATTCTAATACTGATTCTGATTCTG
Found at i:81400751 original size:29 final size:30
Alignment explanation
Indices: 81400704--81400770 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 30
81400694 TGACAGGTTT
81400704 TAAATATTTATAATGAATCATTCTTGAAAC
1 TAAATATTTATAATGAATCATTCTTGAAAC
81400734 TAAA-ATTTATAATGAATCATTCTTGAAAC
1 TAAATATTTATAATGAATCATTCTTGAAAC
*
81400763 TAACTATT
1 TAAATATT
81400771 ATCACGATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 28 0.80
30 7 0.20
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.40
Consensus pattern (30 bp):
TAAATATTTATAATGAATCATTCTTGAAAC
Found at i:81413603 original size:29 final size:29
Alignment explanation
Indices: 81413528--81413646 Score: 154
Period size: 29 Copynumber: 4.2 Consensus size: 29
81413518 CACATACCTG
81413528 TATATGGCCCAATAGGCCC-AATCACATT
1 TATATGGCCCAATAGGCCCAAATCACATT
** * * *
81413556 CGTATGGCCTATTATGCCCAAATCACATT
1 TATATGGCCCAATAGGCCCAAATCACATT
*
81413585 TATATAGCCC-ATAAGGCCCAAATCACATT
1 TATATGGCCCAAT-AGGCCCAAATCACATT
81413614 TATATGGCCCAATAGGCCCAAATCACA-T
1 TATATGGCCCAATAGGCCCAAATCACATT
81413642 TATAT
1 TATAT
81413647 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
28 21 0.28
29 53 0.70
30 2 0.03
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.27
Consensus pattern (29 bp):
TATATGGCCCAATAGGCCCAAATCACATT
Found at i:81424297 original size:49 final size:50
Alignment explanation
Indices: 81424116--81424313 Score: 220
Period size: 50 Copynumber: 4.0 Consensus size: 50
81424106 ATCCATTGTG
* *
81424116 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCC-GATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGATAA-TT
* * * * * **
81424167 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
** **
81424217 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
81424267 -GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA
81424314 CCTTGTCTAC
Statistics
Matches: 123, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 40 0.33
50 46 0.37
51 37 0.30
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:81444871 original size:28 final size:27
Alignment explanation
Indices: 81444800--81444877 Score: 70
Period size: 29 Copynumber: 2.8 Consensus size: 27
81444790 ATGACGATGT
81444800 TTAAAG-ACTTTTTATTTA-TTATTTA
1 TTAAAGTACTTTTTATTTATTTATTTA
*** *
81444825 TTATTTTCACTTTTATATTTATTTATCTTC
1 TTAAAGT-ACTTTT-TATTTATTTAT-TTA
81444855 TTAAAGTACTTTTTATTTTATTT
1 TTAAAGTACTTTTTA-TTTATTT
81444878 TCCTTTAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
25 3 0.08
27 6 0.15
28 8 0.20
29 17 0.43
30 6 0.15
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.64
Consensus pattern (27 bp):
TTAAAGTACTTTTTATTTATTTATTTA
Found at i:81447692 original size:39 final size:41
Alignment explanation
Indices: 81447597--81447780 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
81447587 TTGAATGATG
*
81447597 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
81447636 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
81447676 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
81447715 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
81447755 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81447781 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 8, Indels: 19
0.82 0.05 0.12
Matches are distributed among these distances:
39 55 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:81447802 original size:79 final size:79
Alignment explanation
Indices: 81447649--81447813 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
81447639 GGACTAAGAT
* **
81447649 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTAA
*
81447714 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
81447728 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGA-G
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGA-GATA
* *
81447790 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
81447807 CCGAAGG
1 CCGAAGG
81447814 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.61
80 24 0.32
81 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTAA
ATCCGGGTTAAATC
Found at i:81455609 original size:39 final size:40
Alignment explanation
Indices: 81455514--81455775 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
81455504 TTGAATGATG
*
81455514 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
81455552 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
81455593 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
81455632 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
81455671 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
81455710 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
81455749 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
81455776 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:81461836 original size:40 final size:40
Alignment explanation
Indices: 81461731--81461907 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
81461721 CGGATGATAA
* * *
81461731 CCGGGCTAAGTCCCGAAGGAATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
81461771 CCGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81461810 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
81461850 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
81461890 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81461908 TACTTGGTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 49 0.40
40 74 0.60
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:81461896 original size:79 final size:79
Alignment explanation
Indices: 81461731--81461907 Score: 225
Period size: 79 Copynumber: 2.2 Consensus size: 79
81461721 CGGATGATAA
* * * *
81461731 CCGGGCTAAGTCCCGAAGGAATTTGTGCTAGTGACTAATTCCGGGCTAAGCTCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
*
81461796 GCGAGTTACTATAT
66 GCAAGTTACTATAT
* *
81461810 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCATTT
81461874 GAGCAAG-TAGCTATAT
64 GAGCAAGTTA-CTATAT
* *
81461890 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81461908 TACTTGGTTT
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
78 2 0.02
79 59 0.69
80 25 0.29
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
GCAAGTTACTATAT
Found at i:81469625 original size:58 final size:58
Alignment explanation
Indices: 81469562--81469677 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
81469552 GTTTGGCCAA
81469562 TATGATTATTAAACAAGTTAAATTTGGCATTATAGATCAAGAAAAATGAGATATGGGT
1 TATGATTATTAAACAAGTTAAATTTGGCATTATAGATCAAGAAAAATGAGATATGGGT
*
81469620 TATGATTATTAAACAAGTTAAATTTGGCATTATATATCAAGAAAAATGAGATATGGGT
1 TATGATTATTAAACAAGTTAAATTTGGCATTATAGATCAAGAAAAATGAGATATGGGT
81469678 CTTGATCGAG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.43, C:0.05, G:0.18, T:0.34
Consensus pattern (58 bp):
TATGATTATTAAACAAGTTAAATTTGGCATTATAGATCAAGAAAAATGAGATATGGGT
Found at i:81492023 original size:29 final size:29
Alignment explanation
Indices: 81491990--81492063 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
81491980 GTTGTGAGAT
* *
81491990 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
81492019 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
81492048 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81492064 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:81499491 original size:15 final size:15
Alignment explanation
Indices: 81499469--81499548 Score: 69
Period size: 15 Copynumber: 5.4 Consensus size: 15
81499459 GTATCTTGGG
*
81499469 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
81499484 TCTT-TTTATTCTGGA
1 T-TTCTTTATTCTGGA
*
81499499 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
81499514 TTT-TTCTA-TCTTGAA
1 TTTCTT-TATTC-TGGA
*
81499529 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
81499543 TTTCTT
1 TTTCTT
81499549 GTTATCTTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
14 13 0.25
15 34 0.64
16 6 0.11
ACGTcount: A:0.11, C:0.15, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:81499505 original size:30 final size:30
Alignment explanation
Indices: 81499460--81499537 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
81499450 CATAGTATCG
**
81499460 TATCTTGGGTTTCTTTATCCTGGATCTTTT-
1 TATCTTGAATTTCTTTATCCTGGAT-TTTTC
* * *
81499490 TAT-TCTGGATTTCTTTATTCTGGGTTTTTC
1 TATCT-TGAATTTCTTTATCCTGGATTTTTC
81499520 TATCTTGAATTTCTTTAT
1 TATCTTGAATTTCTTTAT
81499538 TCGGTTTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 5 0.12
30 35 0.85
31 1 0.02
ACGTcount: A:0.13, C:0.14, G:0.14, T:0.59
Consensus pattern (30 bp):
TATCTTGAATTTCTTTATCCTGGATTTTTC
Found at i:81514398 original size:27 final size:27
Alignment explanation
Indices: 81514367--81514517 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
81514357 TAAATTGTAC
* *
81514367 AGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
81514393 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
81514421 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
81514449 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
81514476 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
81514503 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81514518 GACTCAATAT
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 84 0.78
28 23 0.21
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:81514464 original size:55 final size:54
Alignment explanation
Indices: 81514366--81514517 Score: 171
Period size: 55 Copynumber: 2.8 Consensus size: 54
81514356 TTAAATTGTA
** *
81514366 CAGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTGAATATGTA-GCACTAAGTGTGCGAATTGACCACG
* * * **
81514420 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAG-TTGAATATGTAGCACTAAGTGTGCGAATTGACCACG
* * * *
81514475 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
81514518 GACTCAATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 38 0.46
55 44 0.53
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (54 bp):
CAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAATTGACCACG
Found at i:81514508 original size:82 final size:82
Alignment explanation
Indices: 81514367--81514517 Score: 187
Period size: 82 Copynumber: 1.8 Consensus size: 82
81514357 TAAATTGTAC
* * *
81514367 AGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTG
1 AGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
81514432 TGCGAGTTTGACTATGT
66 TGCGAGTTTGACTATGT
** * * ** * *
81514449 AGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTGTGCGAATTGACCATACAGCACTAAGT
81514513 GTGCG
65 GTGCG
81514518 GACTCAATAT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 1 0.02
82 56 0.98
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
TGCGAGTTTGACTATGT
Found at i:81518376 original size:31 final size:31
Alignment explanation
Indices: 81518338--81518398 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
81518328 TTTCAAGATT
81518338 TGAGTTGAATGGATTGCCTAGCTATGTTTTA
1 TGAGTTGAATGGATTGCCTAGCTATGTTTTA
81518369 TGAGTTGAATGGATTGCCTAGCTATGTTTT
1 TGAGTTGAATGGATTGCCTAGCTATGTTTT
81518399 GTTCTTAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.21, C:0.10, G:0.26, T:0.43
Consensus pattern (31 bp):
TGAGTTGAATGGATTGCCTAGCTATGTTTTA
Found at i:81522316 original size:67 final size:67
Alignment explanation
Indices: 81522219--81522394 Score: 280
Period size: 67 Copynumber: 2.6 Consensus size: 67
81522209 GAACAGATAT
* * * * *
81522219 ATATATGTGGTAAAGCCACCTGATTGCAGCGACGCTGCCAGATATTGTGTCGAAGTCACCAGAAC
1 ATATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
81522284 AG
66 AG
*
81522286 ATATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAT
1 ATATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
81522351 AG
66 AG
* *
81522353 ATATATGTCGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
1 ATATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
81522395 GCCCTTCCTC
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 101 1.00
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.20
Consensus pattern (67 bp):
ATATATGTGGTGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
AG
Found at i:81523213 original size:27 final size:27
Alignment explanation
Indices: 81523017--81523216 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
81523007 GGGGTAAAAT
* * * *
81523017 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
81523044 GGTAACTT-TACCCTACAGGGGTATTTC
1 GGTAA-TTCTACCCTACAGGGGTATTTC
* * *
81523071 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
81523098 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
81523125 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
81523152 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
81523179 GATAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
81523206 GGTAATTCTAC
1 GGTAATTCTAC
81523217 AACTTATCCA
Statistics
Matches: 152, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 148 0.97
28 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:81533039 original size:27 final size:27
Alignment explanation
Indices: 81533009--81533186 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81532999 ATATTGAGTC
* * * *
81533009 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
81533036 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81533063 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
81533091 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
81533118 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
81533145 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81533172 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81533187 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:81533148 original size:82 final size:81
Alignment explanation
Indices: 81533030--81533185 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81533020 TGCTATATAA
* *
81533030 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
81533095 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
81533112 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
81533176 CACTTAGTGC
65 CACTTAGTGC
81533186 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:81539831 original size:67 final size:67
Alignment explanation
Indices: 81539722--81539862 Score: 203
Period size: 67 Copynumber: 2.1 Consensus size: 67
81539712 ATAGAAATTA
* * *
81539722 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGA-ATAGATATATGTGGC
1 GCCACCAGATTGCAGCGAGACTGCCAGATACTATGACAAAGTCACCAGATATAGATAT-TGCGGC
81539786 AAG
65 AAG
* * * *
81539789 GCCACCAGATTGCAGTGAGGCTGCCAGATACTGTGACAAAGTCACCAGATATAGATATTGCGGCT
1 GCCACCAGATTGCAGCGAGACTGCCAGATACTATGACAAAGTCACCAGATATAGATATTGCGGCA
81539854 AG
66 AG
81539856 GCCACCA
1 GCCACCA
81539863 AAACAGATAT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 58 0.88
68 8 0.12
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (67 bp):
GCCACCAGATTGCAGCGAGACTGCCAGATACTATGACAAAGTCACCAGATATAGATATTGCGGCA
AG
Found at i:81539966 original size:67 final size:67
Alignment explanation
Indices: 81539887--81540163 Score: 493
Period size: 67 Copynumber: 4.1 Consensus size: 67
81539877 ATATGGTGAA
81539887 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
1 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
81539952 AG
66 AG
81539954 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
1 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
81540019 AG
66 AG
81540021 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
1 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
81540086 AG
66 AG
* * * *
81540088 GCCACCAGATTGCAGTGAGGCTGCCAGATATTGTGACGAAGTCCCCAGATATAGATAT-TGTGGC
1 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGA-ATAGATATATGTGGC
*
81540152 TAG
65 GAG
81540155 GCCACCAGA
1 GCCACCAGA
81540164 ACAGATATAT
Statistics
Matches: 204, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
67 196 0.96
68 8 0.04
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (67 bp):
GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
AG
Found at i:81539998 original size:165 final size:165
Alignment explanation
Indices: 81539721--81540027 Score: 526
Period size: 165 Copynumber: 1.9 Consensus size: 165
81539711 TATAGAAATT
81539721 AGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGC
1 AGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGC
* * *
81539786 AAGGCCACCAGATTGCAGTGAGGCTGCCAGATACTGTGACAAAGTCACCAGATATAGATAT-TGC
66 AAGGCCACCAGATTGCAGCGAGACTGCCAGATACTATGACAAAGTCACCAGA-ATAGATATATGC
*
81539850 GGCTAGGCCACCAAAACAGATATCTATATATGGTGA
130 GGCGAGGCCACCAAAACAGATATCTATATATGGTGA
81539886 AGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGC
1 AGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGC
* * * *
81539951 GAGGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTG
66 AAGGCCACCAGATTGCAGCGAGACTGCCAGATACTATGACAAAGTCACCAGAATAGATATATGCG
81540016 GCGAGGCCACCA
131 GCGAGGCCACCA
81540028 GATTGCAGCG
Statistics
Matches: 133, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
164 8 0.06
165 125 0.94
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (165 bp):
AGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGC
AAGGCCACCAGATTGCAGCGAGACTGCCAGATACTATGACAAAGTCACCAGAATAGATATATGCG
GCGAGGCCACCAAAACAGATATCTATATATGGTGA
Found at i:81540178 original size:232 final size:229
Alignment explanation
Indices: 81539721--81540395 Score: 839
Period size: 232 Copynumber: 2.9 Consensus size: 229
81539711 TATAGAAATT
81539721 AGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGC
1 AGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGC
* * * * *
81539786 AAGGCCACCAGATTGCAGTGAGGCTGCCAGATACTGTGACAAAGTCACCAGATATAGATAT-TGC
66 GAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGA-ATAGATATATGT
* ** * * * * *
81539850 GGCTAGGCCACCA-A-AACAGAT-A---T-CTATATATGGTGAAGCCACCAGATTGCAGCGAGAC
130 GGCGAGGCCACCAGATTGCAG-TGAGGCTGCCAGATATTGTG-A-CGA--AG--T-CA-CCAGA-
* * * * *
81539908 TGCCAGATATTATGACGAAGTCACCAG-AATAGATATATGTGGCGA
185 T-ACAGATATTGTGGCGAGGCCACCAGAAATAGATATATGTGGCGA
*
81539953 GGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGC
1 AGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGC
* *
81540018 GAGGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTG
66 GAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAATAGATATATGTG
* *
81540083 GCGAGGCCACCAGATTGCAGTGAGGCTGCCAGATATTGTGACGAAGTCCCCAGATATAGATATTG
131 GCGAGGCCACCAGATTGCAGTGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTG
* * *
81540148 TGGCTAGGCCACCAGAACAGATATATATATGTGGTGA
196 TGGCGAGGCCACCAG-A-A-ATAGATATATGTGGCGA
* * * *
81540185 AGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAAATATATGTGGC
1 AGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGC
* *
81540250 GAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAAATATATGTG
66 GAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAATAGATATATGTG
*
81540315 GCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGA-ACAGATATAT
131 GCGAGGCCACCAGATTGCAGTGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATAT-T
81540379 GTGGCGAGGCCACCAGA
195 GTGGCGAGGCCACCAGA
81540396 TTGCAGCGAG
Statistics
Matches: 391, Mismatches: 39, Indels: 27
0.86 0.09 0.06
Matches are distributed among these distances:
228 18 0.05
229 1 0.00
230 4 0.01
231 18 0.05
232 329 0.84
233 2 0.01
234 6 0.02
236 2 0.01
237 2 0.01
238 9 0.02
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20
Consensus pattern (229 bp):
AGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGC
GAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAATAGATATATGTG
GCGAGGCCACCAGATTGCAGTGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTG
TGGCGAGGCCACCAGAAATAGATATATGTGGCGA
Found at i:81540190 original size:31 final size:32
Alignment explanation
Indices: 81540133--81540194 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
81540123 ACGAAGTCCC
*
81540133 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCTAAGCCACCAGAA
*
81540165 CAGATATATATA-TGTGG-TGAAGCCACCAGA
1 CAGATATAGATATTGTGGCT-AAGCCACCAGA
81540195 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 1 0.04
31 15 0.56
32 11 0.41
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCTAAGCCACCAGAA
Found at i:81540211 original size:98 final size:98
Alignment explanation
Indices: 81540074--81540261 Score: 297
Period size: 98 Copynumber: 1.9 Consensus size: 98
81540064 ACCAGAATAG
* * *
81540074 ATATATGTGGCGAGGCCACCAGATTGCAGTGAGGCTGCCAGATATTGTGACGAAGTCCCCAGATA
1 ATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGA-A
* * *
81540139 TAGATAT-TGTGGCTAGGCCACCAGAACAGATAT
65 CAAATATATGTGGCGAGGCCACCAGAACAGATAT
*
81540172 ATATATGTGGTGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
81540237 AAATATATGTGGCGAGGCCACCAGA
66 AAATATATGTGGCGAGGCCACCAGA
81540262 TTGCAGCGAG
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
97 6 0.07
98 76 0.93
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.21
Consensus pattern (98 bp):
ATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
AAATATATGTGGCGAGGCCACCAGAACAGATAT
Found at i:81540212 original size:165 final size:165
Alignment explanation
Indices: 81540007--81540328 Score: 529
Period size: 165 Copynumber: 2.0 Consensus size: 165
81539997 ACCAGAATAG
* *
81540007 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAAT
1 ATATATGTGGCGAAGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAAC
* * *
81540072 AGATATATGTGGCGAGGCCACCAGATTGCAGTGAGGCTGCCAGATATTGTGACGAAGTCCCCAGA
66 AAATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGA
* * *
81540137 TATAGATAT-TGTGGCTAGGCCACCAGAACAGATAT
131 -ACAAATATATGTGGCGAGGCCACCAGAACAGATAT
* * *
81540172 ATATATGTGGTGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAAGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAAC
81540237 AAATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGA
66 AAATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGA
81540302 ACAAATATATGTGGCGAGGCCACCAGA
131 ACAAATATATGTGGCGAGGCCACCAGA
81540329 TTGCAGCGAG
Statistics
Matches: 145, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
164 6 0.04
165 139 0.96
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (165 bp):
ATATATGTGGCGAAGCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAAC
AAATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGA
ACAAATATATGTGGCGAGGCCACCAGAACAGATAT
Found at i:81540260 original size:299 final size:299
Alignment explanation
Indices: 81539722--81540414 Score: 1206
Period size: 299 Copynumber: 2.3 Consensus size: 299
81539712 ATAGAAATTA
*
81539722 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCA
1 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
81539787 AGGCCACCAGATTGCAGTGAGGCTGCCAGATACTGTGACAAAGTCACCAGATATAGATATTGCGG
66 AGGCCACCAGATTGCAGTGAGGCTGCCAGATACTGTGACAAAGTCACCAGATATAGATATTGCGG
*
81539852 CTAGGCCACCAAAACAGATATCTATATATGGTGAAGCCACCAGATTGCAGCGAGACTGCCAGATA
131 CTAGGCCACCAAAACAGATATATATATATGGTGAAGCCACCAGATTGCAGCGAGACTGCCAGATA
* *
81539917 TTATGACGAAGTCACCAGAATAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGACTGCCAGA
196 TTATGACGAAGTCACCAGAACAAATATATGTGGCGAGGCCACCAGATTGCAGCGAGACTGCCAGA
* *
81539982 TATTATGACGAAGTCACCAGAATAGATATATGTGGCGAG
261 TATTATGACGAAGTCACCAGAACAAATATATGTGGCGAG
81540021 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
1 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
* * * *
81540086 AGGCCACCAGATTGCAGTGAGGCTGCCAGATATTGTGACGAAGTCCCCAGATATAGATATTGTGG
66 AGGCCACCAGATTGCAGTGAGGCTGCCAGATACTGTGACAAAGTCACCAGATATAGATATTGCGG
* * *
81540151 CTAGGCCACCAGAACAGATATATATATGTGGTGAAGCCACCAGATTGCAGCGAGGCTGCCAGATA
131 CTAGGCCACCAAAACAGATATATATATATGGTGAAGCCACCAGATTGCAGCGAGACTGCCAGATA
* *
81540216 TTGTGACGAAGTCACCAGAACAAATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
196 TTATGACGAAGTCACCAGAACAAATATATGTGGCGAGGCCACCAGATTGCAGCGAGACTGCCAGA
*
81540281 TATTGTGACGAAGTCACCAGAACAAATATATGTGGCGAG
261 TATTATGACGAAGTCACCAGAACAAATATATGTGGCGAG
* * *
81540320 GCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCG
1 GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
*
81540385 AGGCCACCAGATTGCAGCGAGGCTGCCAGA
66 AGGCCACCAGATTGCAGTGAGGCTGCCAGA
81540415 ACGCTTCCTC
Statistics
Matches: 374, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
299 374 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.19
Consensus pattern (299 bp):
GCCACCAGATTGCAGCGAGACTGCCAGATATTATGACGAAGTCACCAGAATAGATATATGTGGCG
AGGCCACCAGATTGCAGTGAGGCTGCCAGATACTGTGACAAAGTCACCAGATATAGATATTGCGG
CTAGGCCACCAAAACAGATATATATATATGGTGAAGCCACCAGATTGCAGCGAGACTGCCAGATA
TTATGACGAAGTCACCAGAACAAATATATGTGGCGAGGCCACCAGATTGCAGCGAGACTGCCAGA
TATTATGACGAAGTCACCAGAACAAATATATGTGGCGAG
Found at i:81540268 original size:67 final size:67
Alignment explanation
Indices: 81540172--81540414 Score: 459
Period size: 67 Copynumber: 3.6 Consensus size: 67
81540162 GAACAGATAT
* *
81540172 ATATATGTGGTGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
81540237 AA
66 AA
81540239 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
81540304 AA
66 AA
81540306 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
*
81540371 AG
66 AA
81540373 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
81540415 ACGCTTCCTC
Statistics
Matches: 173, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 173 1.00
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.18
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
AA
Found at i:81540392 original size:27 final size:26
Alignment explanation
Indices: 81540344--81540395 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
81540334 GCGAGGCTGC
*
81540344 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
81540370 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
81540396 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:81541074 original size:27 final size:27
Alignment explanation
Indices: 81541044--81541215 Score: 211
Period size: 27 Copynumber: 6.4 Consensus size: 27
81541034 GGGGCAAAAT
* * *
81541044 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81541071 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
81541098 GGTGTTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81541125 GGTAATTCTATCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
81541152 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
81541179 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
81541206 GGTAATTCTA
1 GGTAATTCTA
81541216 TAACTTATCC
Statistics
Matches: 125, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 4 0.03
27 118 0.94
28 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:81541204 original size:54 final size:54
Alignment explanation
Indices: 81541044--81541215 Score: 236
Period size: 54 Copynumber: 3.2 Consensus size: 54
81541034 GGGGCAAAAT
* * *
81541044 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
** * * *
81541098 GGTGTTTCTACCCTACAAGGGTATTTTGGTAATTCTATCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * **
81541152 AGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
81541206 GGTAATTCTA
1 GGTAATTCTA
81541216 TAACTTATCC
Statistics
Matches: 100, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 100 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Done.