Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 243 of 284
Found at i:81542577 original size:32 final size:31
Alignment explanation
Indices: 81542541--81542636 Score: 84
Period size: 32 Copynumber: 3.0 Consensus size: 31
81542531 ATGCTGCTCT
*
81542541 AAGCCTTCAGTAGCGATATTATAATTGGCACA
1 AAGCCATCAGTAGCG-TATTATAATTGGCACA
* * **
81542573 AAGCCATCGGTAACTGTATTATGTTTGGCACA
1 AAGCCATCAGTAGC-GTATTATAATTGGCACA
* * * *
81542605 TAGCCATCAGTGGCGGTAATATAATTTGCACA
1 AAGCCATCAGTAGC-GTATTATAATTGGCACA
81542637 CAACCTTGGG
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
32 48 0.98
33 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (31 bp):
AAGCCATCAGTAGCGTATTATAATTGGCACA
Found at i:81543166 original size:54 final size:54
Alignment explanation
Indices: 81543108--81543210 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 54
81543098 TTTTACCTTA
*
81543108 TAGGGGTATTTCAGTAATTTCAC-ACTACAAGGGTATTTAAGTAATTTTACAAGT
1 TAGGGGTATTTCAGTAATTTCACAAAT-CAAGGGTATTTAAGTAATTTTACAAGT
* *
81543162 TAGGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTA
1 TAGGGGTATTTCAGTAATTTCACAAATCAAGGGTATTTAAGTAATTTTA
81543211 TAACCTGGGG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
54 43 0.96
55 2 0.04
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (54 bp):
TAGGGGTATTTCAGTAATTTCACAAATCAAGGGTATTTAAGTAATTTTACAAGT
Found at i:81543222 original size:27 final size:26
Alignment explanation
Indices: 81543110--81543240 Score: 100
Period size: 27 Copynumber: 4.9 Consensus size: 26
81543100 TTACCTTATA
* * **
81543110 GGGGTATTTCAGTAATTTCACACTACA
1 GGGGTATTTCAGTAATTTTACA-AATG
* * * *
81543137 AGGGTATTTAAGTAATTTTACAAGTTA
1 GGGGTATTTCAGTAATTTTACAA-ATG
*
81543164 GGGGTATTTCAGTAATTTCACAAATCG
1 GGGGTATTTCAGTAATTTTACAAAT-G
* * *
81543191 AGGGTATTTCAGTAATTTTATAACCTG
1 GGGGTATTTCAGTAATTTTACAA-ATG
* *
81543218 GGGGTATTTTAGAAATTTTACAA
1 GGGGTATTTCAGTAATTTTACAA
81543241 GTTAGGGTCT
Statistics
Matches: 82, Mismatches: 19, Indels: 6
0.77 0.18 0.06
Matches are distributed among these distances:
26 1 0.01
27 80 0.98
28 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (26 bp):
GGGGTATTTCAGTAATTTTACAAATG
Found at i:81543222 original size:54 final size:55
Alignment explanation
Indices: 81543108--81543240 Score: 162
Period size: 54 Copynumber: 2.5 Consensus size: 55
81543098 TTTTACCTTA
* **
81543108 TAGGGGTATTTCAGTAATTTCAC-ACTACAAGGGTATTTAAGTAATTTTACAAGT
1 TAGGGGTATTTCAGTAATTTCACAAATACAAGGGTATTTAAGTAATTTTACAACC
* * *
81543162 TAGGGGTATTTCAGTAATTTCACAAAT-CGAGGGTATTTCAGTAATTTTATAACC
1 TAGGGGTATTTCAGTAATTTCACAAATACAAGGGTATTTAAGTAATTTTACAACC
* * * *
81543216 TGGGGGTATTTTAGAAATTTTACAA
1 TAGGGGTATTTCAGTAATTTCACAA
81543241 GTTAGGGTCT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 66 0.97
55 2 0.03
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (55 bp):
TAGGGGTATTTCAGTAATTTCACAAATACAAGGGTATTTAAGTAATTTTACAACC
Found at i:81543380 original size:27 final size:27
Alignment explanation
Indices: 81543342--81543401 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
81543332 CCCATTACTC
81543342 GGCCCAAGTGGGCCTACACGCTCGTGT
1 GGCCCAAGTGGGCCTACACGCTCGTGT
81543369 GGCCCAAGTGGGCCTACACGCTCGTGT
1 GGCCCAAGTGGGCCTACACGCTCGTGT
81543396 GGCCCA
1 GGCCCA
81543402 TTTATCCCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.15, C:0.35, G:0.33, T:0.17
Consensus pattern (27 bp):
GGCCCAAGTGGGCCTACACGCTCGTGT
Found at i:81543869 original size:17 final size:18
Alignment explanation
Indices: 81543847--81543881 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
81543837 TGACACAAGC
81543847 GGGCCTA-TAGGCCCATT
1 GGGCCTATTAGGCCCATT
*
81543864 GGGCCTATTCGGCCCATT
1 GGGCCTATTAGGCCCATT
81543882 TCGTGGCCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.14, C:0.31, G:0.29, T:0.26
Consensus pattern (18 bp):
GGGCCTATTAGGCCCATT
Found at i:81545767 original size:21 final size:21
Alignment explanation
Indices: 81545730--81545774 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
81545720 ATCTTCCACC
* *
81545730 TTTCTTCTCTATTTTTC-TAT
1 TTTCTCCTCTATATTTCGTAT
81545750 TTTCTCCTCCTATATTTCGTAT
1 TTTCTCCT-CTATATTTCGTAT
81545772 TTT
1 TTT
81545775 TTTTACATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 8 0.38
22 6 0.29
ACGTcount: A:0.11, C:0.22, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTCTCCTCTATATTTCGTAT
Found at i:81551170 original size:23 final size:23
Alignment explanation
Indices: 81551084--81551207 Score: 83
Period size: 23 Copynumber: 5.3 Consensus size: 23
81551074 CGACTCACCA
*
81551084 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCGTATGAGCTTACTG--AT-T
* * *
81551110 CAACTCGTAAGAGCTTACTGTTTT
1 CAGCTCGTATGAGCTTACTG-ATT
*
81551134 CAGCTCAT-TGGAGCTTACTGATT
1 CAGCTCGTAT-GAGCTTACTGATT
*
81551157 CAGCTCGTATGAGCTTGCT-ATT
1 CAGCTCGTATGAGCTTACTGATT
* * * *
81551179 TAGCTTG-ATAGAGCTTACCGTTT
1 CAGCTCGTAT-GAGCTTACTGATT
81551202 CAGCTC
1 CAGCTC
81551208 AATAGAGCTT
Statistics
Matches: 77, Mismatches: 17, Indels: 11
0.73 0.16 0.10
Matches are distributed among these distances:
21 2 0.03
22 15 0.19
23 23 0.30
24 18 0.23
25 2 0.03
26 17 0.22
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACTGATT
Found at i:81551212 original size:23 final size:23
Alignment explanation
Indices: 81551119--81551233 Score: 90
Period size: 23 Copynumber: 4.9 Consensus size: 23
81551109 TCAACTCGTA
*
81551119 AGAGCTTACTGTTTTCAGCTCATT
1 AGAGCTTACTG-TTTCAGCTCAAT
* * *
81551143 GGAGCTTACTGATTCAGCTC-GT
1 AGAGCTTACTGTTTCAGCTCAAT
* * **
81551165 ATGAGCTTGCTATTT-AGCTTGAT
1 A-GAGCTTACTGTTTCAGCTCAAT
*
81551188 AGAGCTTACCGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
*
81551211 AGAGCTTATTGTTTATCAGCTCA
1 AGAGCTTACTG-TT-TCAGCTCA
81551234 GGAGGAGCTT
Statistics
Matches: 70, Mismatches: 16, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
22 15 0.21
23 35 0.50
24 12 0.17
25 8 0.11
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:81551426 original size:20 final size:20
Alignment explanation
Indices: 81551403--81551449 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
81551393 GAAATGAATG
81551403 AATTACTGTTGATACAGATA
1 AATTACTGTTGATACAGATA
*
81551423 AATTACTGTTGATATAGATA
1 AATTACTGTTGATACAGATA
81551443 AATTACT
1 AATTACT
81551450 TTTATTACGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (20 bp):
AATTACTGTTGATACAGATA
Found at i:81554629 original size:17 final size:17
Alignment explanation
Indices: 81554607--81554647 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
81554597 AGGTCTCCAA
81554607 CGAGCTTCCAACCAAAT
1 CGAGCTTCCAACCAAAT
81554624 CGAGCTTCCAACCAAAT
1 CGAGCTTCCAACCAAAT
81554641 CGAGCTT
1 CGAGCTT
81554648 TTTGATGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.32, C:0.34, G:0.15, T:0.20
Consensus pattern (17 bp):
CGAGCTTCCAACCAAAT
Found at i:81555429 original size:20 final size:20
Alignment explanation
Indices: 81555406--81555453 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
81555396 GGGGCACCTT
*
81555406 AGTGCAAACAGGGACACTGA
1 AGTGCAAACAGGGACACGGA
* * *
81555426 AGTGTATACAGGGGCACGGA
1 AGTGCAAACAGGGACACGGA
81555446 AGTGCAAA
1 AGTGCAAA
81555454 TAGAGGCACC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.17, G:0.33, T:0.12
Consensus pattern (20 bp):
AGTGCAAACAGGGACACGGA
Found at i:81561036 original size:46 final size:46
Alignment explanation
Indices: 81560986--81561158 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
81560976 TGGTTGAGCA
*
81560986 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
81561032 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81561077 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81561125 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81561159 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81561142 original size:93 final size:93
Alignment explanation
Indices: 81560983--81561153 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
81560973 GGATGGTTGA
* * *
81560983 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81561048 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
81561076 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81561141 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81561154 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:81563566 original size:17 final size:18
Alignment explanation
Indices: 81563531--81563567 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
81563521 AAAGAAATTC
81563531 AACAAATAATAATAAATA
1 AACAAATAATAATAAATA
81563549 AACAAA-AATTAA-AAATA
1 AACAAATAA-TAATAAATA
81563566 AA
1 AA
81563568 ATAAATAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (18 bp):
AACAAATAATAATAAATA
Found at i:81566257 original size:38 final size:38
Alignment explanation
Indices: 81566215--81566430 Score: 128
Period size: 38 Copynumber: 5.2 Consensus size: 38
81566205 TTTCAAATTA
*
81566215 ACATGTATAACAGTGGCATATCCACTTAGTACCACGTT
1 ACATGTATAACAGTGGCATATCCACTTAGCACCACGTT
* * *
81566253 ACATGTTTAACCA-TGGTATATCCACTTACCACCACGTTAAT
1 ACATGTATAA-CAGTGGCATATCCACTTAGCACCACG-T--T
* * *
81566294 GAATCAATATATGTAACTGTGGCATATCCACTTAGCACCACATT
1 --A-C-ATGTA--TAACAGTGGCATATCCACTTAGCACCACGTT
* * * *
81566338 ACATGTTTAACCGTGGTATTTCCACTTAGCACCACGTTAAT
1 ACATGTATAACAGTGGCATATCCACTTAGCACCACG-T--T
* * *
81566379 GAATCAATATATGTAACCGTGGCATATCCGCTTAGCACCACGTT
1 --A-C-ATGTA--TAACAGTGGCATATCCACTTAGCACCACGTT
81566423 ACATGTAT
1 ACATGTAT
81566431 CAATATGTGT
Statistics
Matches: 136, Mismatches: 22, Indels: 40
0.69 0.11 0.20
Matches are distributed among these distances:
38 55 0.40
39 4 0.03
40 7 0.05
41 4 0.03
42 2 0.01
43 2 0.01
44 4 0.03
45 6 0.04
46 3 0.02
47 49 0.36
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (38 bp):
ACATGTATAACAGTGGCATATCCACTTAGCACCACGTT
Found at i:81566371 original size:85 final size:85
Alignment explanation
Indices: 81566222--81566428 Score: 342
Period size: 85 Copynumber: 2.4 Consensus size: 85
81566212 TTAACATGTA
*
81566222 TAACAGTGGCATATCCACTTAGTACCACGTTACATGTTTAACCATGGTATATCCACTTACCACCA
1 TAACAGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTACCACCA
81566287 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * * * *
81566307 TAACTGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATTTCCACTTAGCACCA
1 TAACAGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTACCACCA
81566372 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* *
81566392 TAACCGTGGCATATCCGCTTAGCACCACGTTACATGT
1 TAACAGTGGCATATCCACTTAGCACCACGTTACATGT
81566429 ATCAATATGT
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 113 1.00
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (85 bp):
TAACAGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTACCACCA
CGTTAATGAATCAATATATG
Found at i:81566414 original size:47 final size:48
Alignment explanation
Indices: 81566345--81566470 Score: 173
Period size: 48 Copynumber: 2.6 Consensus size: 48
81566335 ATTACATGTT
*
81566345 TAACCGTGGTATTTCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * * *
81566392 TAACCGTGGCATATCCGCTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * *
81566440 TAATCATGGTATATTCACTTAGCACCACGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTT
81566471 TTTTTTCATT
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
47 29 0.43
48 39 0.57
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
Found at i:81568787 original size:15 final size:15
Alignment explanation
Indices: 81568747--81568788 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
81568737 GAAGCCCAGA
81568747 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
81568762 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
*
81568777 ATAAGGGAATCC
1 ATAAGGAAATCC
81568789 CATTTATAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:81572143 original size:47 final size:47
Alignment explanation
Indices: 81572074--81572285 Score: 208
Period size: 47 Copynumber: 4.7 Consensus size: 47
81572064 GTTACATGTT
* * * *
81572074 TAACCGTGGTATTTTCACTTAGCACCACGTTAATGAATCGATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
81572121 TAACCGTAGCATATCCACTTAGCACCATG-T--T--A-C-ATCT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
81572159 TAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * * *
81572206 TAATCGTGGCATATCCGCTTAGCACCACATTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* *
81572254 TAATCGTGGTATATCCACTTAGCACCACGTTA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA
81572286 CATGTATAAC
Statistics
Matches: 136, Mismatches: 19, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
38 25 0.18
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 53 0.39
48 42 0.31
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.32
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:81572240 original size:85 final size:85
Alignment explanation
Indices: 81572036--81572232 Score: 295
Period size: 85 Copynumber: 2.3 Consensus size: 85
81572026 TTAACATGTA
* * * * * *
81572036 TAACCATGGCATATCCATTTAGCCCCATGTTACATGTTTAACCGTGGTATTTTCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCATGTTACATCTTTAACCGTGGTATATCCACTTAGCACCA
* *
81572101 CGTTAATGAATCGATATATG
66 CATTAATGAATCAATATATG
*
81572121 TAACCGTAGCATATCCACTTAGCACCATGTTACATCTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCATGTTACATCTTTAACCGTGGTATATCCACTTAGCACCA
81572186 CATTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
* *
81572206 TAATCGTGGCATATCCGCTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCA
81572233 CATTACATGT
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 100 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCATGTTACATCTTTAACCGTGGTATATCCACTTAGCACCA
CATTAATGAATCAATATATG
Found at i:81572268 original size:48 final size:48
Alignment explanation
Indices: 81572163--81572292 Score: 208
Period size: 48 Copynumber: 2.7 Consensus size: 48
81572153 CATCTTTAAC
*
81572163 CGTGGTATATCCACTTAGCACCACATTA-ATGAATCAATATATGTAAT
1 CGTGGTATATCCACTTAGCACCACATTACATGTATCAATATATGTAAT
* * *
81572210 CGTGGCATATCCGCTTAGCACCACATTACATGTATCAATATGTGTAAT
1 CGTGGTATATCCACTTAGCACCACATTACATGTATCAATATATGTAAT
*
81572258 CGTGGTATATCCACTTAGCACCACGTTACATGTAT
1 CGTGGTATATCCACTTAGCACCACATTACATGTAT
81572293 AACCGTGGTA
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
47 26 0.35
48 49 0.65
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (48 bp):
CGTGGTATATCCACTTAGCACCACATTACATGTATCAATATATGTAAT
Found at i:81572312 original size:38 final size:38
Alignment explanation
Indices: 81572249--81572322 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
81572239 ATGTATCAAT
* *
81572249 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAC
1 ATGTATAACCGTGGTATATCCACTTAGCACCACGTTAC
*
81572287 ATGTATAACCGTGGTATATCTACTTAGCACCACGTT
1 ATGTATAACCGTGGTATATCCACTTAGCACCACGTT
81572323 TTTTTTCATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (38 bp):
ATGTATAACCGTGGTATATCCACTTAGCACCACGTTAC
Found at i:81573604 original size:25 final size:25
Alignment explanation
Indices: 81573570--81573619 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
81573560 ATTATGATTG
81573570 AATATGATATGAGCTTGCTAATATT
1 AATATGATATGAGCTTGCTAATATT
81573595 AATATGATATGAGCTTGCTAATATT
1 AATATGATATGAGCTTGCTAATATT
81573620 TATGCGCACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (25 bp):
AATATGATATGAGCTTGCTAATATT
Found at i:81579750 original size:46 final size:48
Alignment explanation
Indices: 81579647--81579968 Score: 206
Period size: 46 Copynumber: 6.8 Consensus size: 48
81579637 GGGTTAATAT
* * * * * * *
81579647 GAGCTAGTGTAAGACCATGTTTGGGACATAGCATCGACATTGAGACG-A
1 GAGCCAGTGTAAGA-CATGTCTAGGACATGGCATCGGCCTCGAGACGTA
* *
81579695 GAGCTAGTGTAAGACATGTCTAGGACAT-TCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGAGACGTA
*
81579742 -AGCCAGTGTAAGACATGTCTGGGACAT-GCATCGG-CTACGAGA--T-
1 GAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCT-CGAGACGTA
* * * * *
81579785 GTGTCAGTGTAAGACCATGTCT-GAGACATGGCATCGGCAC-GGATATGTGA
1 GAGCCAGTGTAAGA-CATGTCTAG-GACATGGCATCGGC-CTCGAGACGT-A
* *
81579835 GAGCTAGTGTAAGACCATGTC-AGGGACATGGCGTCGGCCTCGATGACG-A
1 GAGCCAGTGTAAGA-CATGTCTA-GGACATGGCATCGGCCTCGA-GACGTA
* * * * *
81579884 TAGTCAGTGTAAGACAATGTCTGGGACATGGCATC-GACTTGAGA--TA
1 GAGCCAGTGTAAGAC-ATGTCTAGGACATGGCATCGGCCTCGAGACGTA
* * *
81579930 TGAGCTAATGTAAGACCATGTCTGGGACATGGCATCGGC
1 -GAGCCAGTGTAAGA-CATGTCTAGGACATGGCATCGGC
81579969 ATTCTAACCC
Statistics
Matches: 220, Mismatches: 32, Indels: 44
0.74 0.11 0.15
Matches are distributed among these distances:
44 13 0.06
45 14 0.06
46 60 0.27
47 44 0.20
48 24 0.11
49 29 0.13
50 33 0.15
51 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGAGACGTA
Found at i:81579959 original size:96 final size:95
Alignment explanation
Indices: 81579643--81579968 Score: 321
Period size: 96 Copynumber: 3.4 Consensus size: 95
81579633 GTATGGGTTA
* * * * * *
81579643 ATATGAGCTAGTGTAAGACCATGTTTGGGACATAGCATCGACATTGAGACGAGAG-CTAGTGTAA
1 ATATGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGATAGTC-AGTGTAA
* * *
81579707 GACATGTCTAGGACAT-TCATCGGCCTCGAG
65 GACATGTCTGGGACATGGCATCGGACTCGAG
** * * *
81579737 ACGTAAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAGATG-T-GTCAGTGTAA
1 ATATGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGACGATAGTCAGTGTAA
* *
81579797 GACCATGTCTGAGACATGGCATCGG-CACG-G
65 GA-CATGTCTGGGACATGGCATCGGACTCGAG
* *
81579827 ATATGTGAGAGCTAGTGTAAGACCATGTCAGGGACATGGCGTCGGCCTCGATGACGATAGTCAGT
1 ATA--T--GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GACGATAGTCAGT
*
81579892 GTAAGACAATGTCTGGGACATGGCATC-GACTTGAG
61 GTAAGAC-ATGTCTGGGACATGGCATCGGACTCGAG
*
81579927 ATATGAGCTAATGTAAGACCATGTCTGGGACATGGCATCGGC
1 ATATGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
81579969 ATTCTAACCC
Statistics
Matches: 188, Mismatches: 27, Indels: 32
0.76 0.11 0.13
Matches are distributed among these distances:
90 12 0.06
91 17 0.09
92 18 0.10
93 13 0.07
94 26 0.14
95 13 0.07
96 44 0.23
97 5 0.03
98 4 0.02
99 32 0.17
100 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (95 bp):
ATATGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGATAGTCAGTGTAAG
ACATGTCTGGGACATGGCATCGGACTCGAG
Found at i:81591483 original size:27 final size:27
Alignment explanation
Indices: 81591452--81591629 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81591442 TAAATTGTAC
81591452 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81591479 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81591505 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81591533 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81591561 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81591588 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81591615 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81591630 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81591566 original size:82 final size:81
Alignment explanation
Indices: 81591453--81591608 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81591443 AAATTGTACA
* *
81591453 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81591517 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81591534 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81591599 TGCGAGTTGA
65 TGCGAATTGA
81591609 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81591620 original size:82 final size:81
Alignment explanation
Indices: 81591449--81591629 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81591439 GATTAAATTG
* *
81591449 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81591514 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81591530 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81591594 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81591612 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81591630 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81599476 original size:16 final size:16
Alignment explanation
Indices: 81599455--81599486 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81599445 ATTAACAATA
*
81599455 TCACACAAGCGTGCAT
1 TCACACAAACGTGCAT
81599471 TCACACAAACGTGCAT
1 TCACACAAACGTGCAT
81599487 AAAATTTCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.31, G:0.16, T:0.19
Consensus pattern (16 bp):
TCACACAAACGTGCAT
Found at i:81601624 original size:39 final size:39
Alignment explanation
Indices: 81601463--81601727 Score: 295
Period size: 40 Copynumber: 6.6 Consensus size: 39
81601453 GCTACTCATT
* * *
81601463 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
* * *
81601503 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
* *
81601543 CAAATGCCTTCGGATCTTAGTCCGGATATTAGTATCTCGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGTATCTCGCA
81601584 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
81601623 CAAATGCCTTCGGGCTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * * *
81601662 CAAATGCCTTCGGATCTTAGTCC-GAATATGGTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGT-ATC-TCGCA
81601703 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
81601728 CATCATTCAA
Statistics
Matches: 200, Mismatches: 16, Indels: 17
0.86 0.07 0.07
Matches are distributed among these distances:
39 69 0.34
40 93 0.47
41 38 0.19
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:81603341 original size:16 final size:16
Alignment explanation
Indices: 81603320--81603355 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
81603310 AATTTTGGGC
81603320 TGTCACAGTGATGCCT
1 TGTCACAGTGATGCCT
81603336 TGTCACAGTGATGCCT
1 TGTCACAGTGATGCCT
81603352 TGTC
1 TGTC
81603356 CAAAGAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.17, C:0.25, G:0.25, T:0.33
Consensus pattern (16 bp):
TGTCACAGTGATGCCT
Found at i:81607715 original size:16 final size:16
Alignment explanation
Indices: 81607694--81607726 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
81607684 ATGTAACGTC
81607694 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
81607710 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
81607726 C
1 C
81607727 TTGAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.33, G:0.06, T:0.12
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:81611183 original size:38 final size:38
Alignment explanation
Indices: 81611124--81611198 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
81611114 GTATTCAGGT
* *
81611124 TAAATCCCGCAAGCTTCGTGCTGGTATTATATCCGGGA
1 TAAATCCCGCAAGCCTAGTGCTGGTATTATATCCGGGA
* *
81611162 TAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TAAATCCCGCAAGCCTAGTGCTGGTATTATATCCGGG
81611199 CCTTCGTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
TAAATCCCGCAAGCCTAGTGCTGGTATTATATCCGGGA
Found at i:81611245 original size:43 final size:43
Alignment explanation
Indices: 81611170--81611401 Score: 351
Period size: 43 Copynumber: 5.4 Consensus size: 43
81611160 GATAAATCCC
* * *
81611170 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
81611211 GCAGGCTTAGTGCCAGTGATGTGTATTCGGGCCTTCGTTCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
81611254 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
81611297 GCAGGCTTCGTGTCGATGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
81611340 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
81611383 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
81611402 AATGATATGT
Statistics
Matches: 174, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
41 14 0.08
42 2 0.01
43 158 0.91
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:81611792 original size:45 final size:43
Alignment explanation
Indices: 81611743--81611840 Score: 121
Period size: 45 Copynumber: 2.3 Consensus size: 43
81611733 GCTTAGCAAA
81611743 CTATAATGCCGGTGAGA-T-ACTATTCGGGCCTTCGAGCCTAACAGG
1 CTATAATGCCGGTGA-ACTGA-TA-TCGGGCC-TCGAGCCTAACAGG
*
81611788 CTATAATGTCGGTGAACTGATATCGGGCCTCGAGCCTAACAGG
1 CTATAATGCCGGTGAACTGATATCGGGCCTCGAGCCTAACAGG
*
81611831 CGA-AATGCCG
1 CTATAATGCCG
81611841 ATGATTTGAG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
42 6 0.12
43 16 0.33
44 8 0.17
45 17 0.35
46 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (43 bp):
CTATAATGCCGGTGAACTGATATCGGGCCTCGAGCCTAACAGG
Found at i:81613550 original size:19 final size:19
Alignment explanation
Indices: 81613518--81613555 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
81613508 ACTTGGGTTG
*
81613518 AGAATTGGCCAAATGGGCC
1 AGAATAGGCCAAATGGGCC
*
81613537 AGAATAGGCTAAATGGGCC
1 AGAATAGGCCAAATGGGCC
81613556 TGATGGGCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.32, T:0.16
Consensus pattern (19 bp):
AGAATAGGCCAAATGGGCC
Found at i:81613687 original size:29 final size:29
Alignment explanation
Indices: 81613654--81613757 Score: 131
Period size: 29 Copynumber: 3.6 Consensus size: 29
81613644 TTATGATTCA
*
81613654 GGCCTAATGGGCCATATGAATGTGAATTG
1 GGCCTAATGGGCCATATGAATATGAATTG
* *
81613683 GGCCTAGTGGGCCATAAGAATATGAATTG
1 GGCCTAATGGGCCATATGAATATGAATTG
* *
81613712 GGCC-AGATGGGCCATTTGAATAAG-ATTG
1 GGCCTA-ATGGGCCATATGAATATGAATTG
*
81613740 GGCCTATTGGGCCATATG
1 GGCCTAATGGGCCATATG
81613758 CATCTATTTA
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
28 19 0.30
29 45 0.70
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
GGCCTAATGGGCCATATGAATATGAATTG
Found at i:81615004 original size:27 final size:26
Alignment explanation
Indices: 81614974--81615065 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 26
81614964 AGCAAAGTTG
81614974 CCAGTAATAGTAAATGTGGCAAAGCCA
1 CCAGT-ATAGTAAATGTGGCAAAGCCA
* *
81615001 CCAGTATCAGTATATGTGGCAATGCCA
1 CCAGTAT-AGTAAATGTGGCAAAGCCA
* * * *
81615028 CCGGTAGCAGTAATTGTGGCAGAGCCA
1 CCAGTA-TAGTAAATGTGGCAAAGCCA
81615055 CCAGTATAGTA
1 CCAGTATAGTA
81615066 CTTCCTCCAA
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
26 6 0.11
27 47 0.89
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.22
Consensus pattern (26 bp):
CCAGTATAGTAAATGTGGCAAAGCCA
Found at i:81625548 original size:27 final size:27
Alignment explanation
Indices: 81625518--81625570 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
81625508 CAAAGCTGCC
81625518 AGTAACAGTAAATACGGCAAAGCCACT
1 AGTAACAGTAAATACGGCAAAGCCACT
* * **
81625545 AGTATCAGTATATGTGGCAAAGCCAC
1 AGTAACAGTAAATACGGCAAAGCCAC
81625571 CGGTAGCAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (27 bp):
AGTAACAGTAAATACGGCAAAGCCACT
Found at i:81625580 original size:27 final size:26
Alignment explanation
Indices: 81625533--81625607 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
81625523 CAGTAAATAC
*
81625533 GGCAAAGCCACTAGTATCAGT-ATATGT
1 GGCAAAGCCACCAGTA-CAGTAAT-TGT
*
81625560 GGCAAAGCCACCGGTAGCAGTAATTGT
1 GGCAAAGCCACCAGTA-CAGTAATTGT
*
81625587 GGCAGAGCCACCAGTACAGTA
1 GGCAAAGCCACCAGTACAGTA
81625608 CTTCCTCCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.83
28 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.19
Consensus pattern (26 bp):
GGCAAAGCCACCAGTACAGTAATTGT
Found at i:81632594 original size:19 final size:19
Alignment explanation
Indices: 81632562--81632599 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
81632552 ACTTGGGTTG
*
81632562 AGAATTGGCCAAATGGGCC
1 AGAATGGGCCAAATGGGCC
*
81632581 AGAATGGGCTAAATGGGCC
1 AGAATGGGCCAAATGGGCC
81632600 TGATGGGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.34, T:0.16
Consensus pattern (19 bp):
AGAATGGGCCAAATGGGCC
Found at i:81632731 original size:29 final size:29
Alignment explanation
Indices: 81632699--81632801 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
81632689 TATGATTCTA
*
81632699 GCCTAATGGGCCATATGAATGTGAATTGG
1 GCCTAATGGGCCATATGAATATGAATTGG
* * **
81632728 GCCTAGTGGGCCATAAGAATATGAACAGG
1 GCCTAATGGGCCATATGAATATGAATTGG
* * *
81632757 GCC-AGATGGGCCATTTGAAAAAG-ATTGG
1 GCCTA-ATGGGCCATATGAATATGAATTGG
*
81632785 GCCTATTGGGCCATATG
1 GCCTAATGGGCCATATG
81632802 CATGTATGTA
Statistics
Matches: 58, Mismatches: 14, Indels: 5
0.75 0.18 0.06
Matches are distributed among these distances:
28 17 0.29
29 41 0.71
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (29 bp):
GCCTAATGGGCCATATGAATATGAATTGG
Found at i:81636114 original size:13 final size:13
Alignment explanation
Indices: 81636096--81636122 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81636086 TACAAATGAT
81636096 AAAATTTTCACAC
1 AAAATTTTCACAC
81636109 AAAATTTTCACAC
1 AAAATTTTCACAC
81636122 A
1 A
81636123 TATCACATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:81636757 original size:8 final size:8
Alignment explanation
Indices: 81636730--81636760 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
81636720 GCATGTGATT
81636730 TCTGACGA
1 TCTGACGA
*
81636738 TCTAACGA
1 TCTGACGA
81636746 TCTGACGA
1 TCTGACGA
81636754 TCTGACG
1 TCTGACG
81636761 CTGCTTTCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (8 bp):
TCTGACGA
Found at i:81642961 original size:38 final size:38
Alignment explanation
Indices: 81642900--81643012 Score: 127
Period size: 38 Copynumber: 2.9 Consensus size: 38
81642890 ATTTGATGTG
* *
81642900 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGTTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
81642940 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * * *
81642978 TATCCGAGATAAATCCCACAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
81643013 TTATATTCGA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 51 0.80
39 5 0.08
40 8 0.12
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.27
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:81643013 original size:38 final size:38
Alignment explanation
Indices: 81642939--81643023 Score: 116
Period size: 38 Copynumber: 2.2 Consensus size: 38
81642929 TGCTGTTAAA
* * * * *
81642939 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
1 ATATCCGAGATAAATCCCACAGGCCTAGTGCTGGTATT
81642977 ATATCCGAGATAAATCCCACAGGCCTAGTGCTGGTATT
1 ATATCCGAGATAAATCCCACAGGCCTAGTGCTGGTATT
*
81643015 ATATTCGAG
1 ATATCCGAG
81643024 CCTTCGTGCC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (38 bp):
ATATCCGAGATAAATCCCACAGGCCTAGTGCTGGTATT
Found at i:81643181 original size:43 final size:43
Alignment explanation
Indices: 81643016--81643170 Score: 247
Period size: 43 Copynumber: 3.6 Consensus size: 43
81643006 GCTGGTATTA
*
81643016 TATTCGAGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
1 TATTCGAGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
81643059 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGAGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
81643102 TATTCGGGCCTTCGTGCCTAACAGGCTTCGTGCCGGTAATGTG
1 TATTCGAGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
81643145 TATTCAAGCCTTCGTGCCTAGCAGGC
1 TATTCGAGCCTTCGTGCCTAGCAGGC
81643171 GTAATGCCGG
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.13, C:0.25, G:0.31, T:0.31
Consensus pattern (43 bp):
TATTCGAGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:81644773 original size:48 final size:48
Alignment explanation
Indices: 81644679--81644782 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
81644669 TGTGCTAAGC
* * * *
81644679 GTAAGACCTATTTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATTCGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
*
81644727 GTAAGACCTA-TCGGGAATAGGCATCAGCACAG-GCAGAGCAGAGCTAGT
1 GTAAGACCTATTCGGG-ATAGGCATCAGCACAGCCCAGAG-AGAGCTAGT
*
81644775 ATAAGACC
1 GTAAGACC
81644783 ATAGTTGGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 8 0.17
48 40 0.83
ACGTcount: A:0.31, C:0.21, G:0.30, T:0.18
Consensus pattern (48 bp):
GTAAGACCTATTCGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
Found at i:81647148 original size:29 final size:29
Alignment explanation
Indices: 81647114--81647187 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
81647104 TAATCAACCG
*
81647114 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
81647143 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
81647172 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
81647188 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:81651595 original size:38 final size:38
Alignment explanation
Indices: 81651550--81651657 Score: 153
Period size: 38 Copynumber: 2.8 Consensus size: 38
81651540 AGCTTAAAGA
** *
81651550 CCCGCAGGCTTCGTGCTGGTAAAATATTCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATTCGGGATAAAT
* *
81651588 CTCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATTCGGGATAAAT
* *
81651626 CCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATTCGGG
81651658 CCTTCGTGCC
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATTCGGGATAAAT
Found at i:81651698 original size:43 final size:43
Alignment explanation
Indices: 81651650--81651761 Score: 197
Period size: 43 Copynumber: 2.6 Consensus size: 43
81651640 GCTGGTATTA
*
81651650 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
* *
81651693 TATTCGAGCCTTCGTGCCCAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
81651736 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
81651762 GTAATGTCGG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.12, C:0.28, G:0.32, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
Found at i:81654885 original size:50 final size:50
Alignment explanation
Indices: 81654810--81655047 Score: 271
Period size: 50 Copynumber: 4.7 Consensus size: 50
81654800 CAAAGCTCTT
* *
81654810 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATC
* * * *
81654860 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATC
* * * * ** *
81654910 TGATACACGTAGTAGCCTGCACTTAGTACTATACACGTGATCGAAGTTAA-C
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCTA-TCAATC
* * * *
81654961 TGGTACGCATAGTAGCCAGCACTTAGTACTACACATGCGACCTGTCAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATC
* * *
81655011 TAGTACACGTAGTAGACTGCACTTAGTACTACACACG
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACG
81655048 TAACTCACAA
Statistics
Matches: 154, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 3 0.02
50 114 0.74
51 36 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATC
Found at i:81654993 original size:101 final size:100
Alignment explanation
Indices: 81654819--81655048 Score: 284
Period size: 101 Copynumber: 2.3 Consensus size: 100
81654809 TTGGTACGCA
* * * *
81654819 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATCTGGTACACATAGTAGCCAGCACTT
* * *
81654884 AGTACTACACACGTGACTTAACCATCT-GATACACG
66 AGTACTACACACGCGACCTAACAATCTAG-TACACG
* * * *
81654919 TAGTAGCCTGCACTTAGTACTATACACGTGATCGAAGTTAA-CTGGTACGCATAGTAGCCAGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TCAATCTGGTACACATAGTAGCCAGCAC
* **
81654983 TTAGTACTACACATGCGACCTGTCAATCTAGTACACG
64 TTAGTACTACACACGCGACCTAACAATCTAGTACACG
*
81655020 TAGTAGACTGCACTTAGTACTACACACGT
1 TAGTAGCCTGCACTTAGTACTACACACGT
81655049 AACTCACAAC
Statistics
Matches: 111, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
100 28 0.25
101 79 0.71
102 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATCTGGTACACATAGTAGCCAGCACTT
AGTACTACACACGCGACCTAACAATCTAGTACACG
Found at i:81658616 original size:45 final size:45
Alignment explanation
Indices: 81658566--81658651 Score: 104
Period size: 45 Copynumber: 1.9 Consensus size: 45
81658556 AATATTAATT
**
81658566 AAATTGTAATATTTATAT-ATTTAAAAA-ATAATTATAATTTAATAG
1 AAATTGTAATACCTAT-TCATTTAAAAATATAATT-TAATTTAATAG
**
81658611 AAATTGTGGTACCTATTCATTTAAAAATATAATTTAATTTA
1 AAATTGTAATACCTATTCATTTAAAAATATAATTTAATTTA
81658652 TAATTATTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
44 1 0.03
45 28 0.80
46 6 0.17
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (45 bp):
AAATTGTAATACCTATTCATTTAAAAATATAATTTAATTTAATAG
Found at i:81659020 original size:24 final size:27
Alignment explanation
Indices: 81658985--81659047 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
81658975 AATTATATTT
81658985 AATT-ATTAAAATAACA-A-A-TTAAA
1 AATTAATTAAAATAACATATATTTAAA
*
81659008 AATTAATTAAAATAAGATATTATTTAAA
1 AATTAATTAAAATAACATA-TATTTAAA
81659036 AATTAATTAAAA
1 AATTAATTAAAA
81659048 ATTAAGCGCG
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 4 0.12
24 11 0.32
25 1 0.03
27 1 0.03
28 17 0.50
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (27 bp):
AATTAATTAAAATAACATATATTTAAA
Found at i:81659880 original size:19 final size:18
Alignment explanation
Indices: 81659831--81659881 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
81659821 TAAAAATATT
* *
81659831 TTTTTAGAAT-TTTCATAC
1 TTTTTA-AATATTTAATAA
81659849 TTTTTAAATTATTTAATAA
1 TTTTTAAA-TATTTAATAA
81659868 TTTTTATAATATTT
1 TTTTTA-AATATTT
81659882 TTAGATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 2 0.07
18 7 0.25
19 17 0.61
20 2 0.07
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTTTAAATATTTAATAA
Found at i:81667850 original size:3 final size:3
Alignment explanation
Indices: 81667835--81667888 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
81667825 TTTGGAAAGA
*
81667835 AAG AAG GAG AAG AAG AA- AAG AAAG AAG -AG AAG AAG AA- AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG AAG
*
81667878 -AG AAG GAG AAG
1 AAG AAG AAG AAG
81667889 CAGACGACAT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
2 8 0.19
3 31 0.74
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:81667864 original size:20 final size:21
Alignment explanation
Indices: 81667830--81667888 Score: 102
Period size: 20 Copynumber: 2.8 Consensus size: 21
81667820 CTCATTTTGG
81667830 AAAGAAAGAAGGAGAAGAAGA
1 AAAGAAAGAAGGAGAAGAAGA
81667851 AAAGAAAGAA-GAGAAGAAGA
1 AAAGAAAGAAGGAGAAGAAGA
81667871 AAAGAAGAGAAGGAGAAG
1 AAAGAA-AGAAGGAGAAG
81667889 CAGACGACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
20 16 0.44
21 14 0.39
22 6 0.17
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (21 bp):
AAAGAAAGAAGGAGAAGAAGA
Found at i:81667867 original size:8 final size:8
Alignment explanation
Indices: 81667831--81667882 Score: 52
Period size: 8 Copynumber: 6.4 Consensus size: 8
81667821 TCATTTTGGA
81667831 AAGAA-AG
1 AAGAAGAG
*
81667838 AAGGAGAAG
1 AAGAAG-AG
*
81667847 AAGAAAAG
1 AAGAAGAG
81667855 AAAGAAGAG
1 -AAGAAGAG
*
81667864 AAGAAGAA
1 AAGAAGAG
81667872 AAGAAGAG
1 AAGAAGAG
81667880 AAG
1 AAG
81667883 GAGAAGCAGA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
7 4 0.11
8 19 0.53
9 13 0.36
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (8 bp):
AAGAAGAG
Found at i:81668434 original size:17 final size:16
Alignment explanation
Indices: 81668411--81668452 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
81668401 TATCTTAATG
81668411 AAAAAATAAAATACGA
1 AAAAAATAAAATACGA
*
81668427 AAAGAAATAAAATATGA
1 AAA-AAATAAAATACGA
81668444 AAAAAATAA
1 AAAAAATAA
81668453 TTTTTTGGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.14
Consensus pattern (16 bp):
AAAAAATAAAATACGA
Found at i:81671943 original size:26 final size:26
Alignment explanation
Indices: 81671896--81671956 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
81671886 GACTATCTTG
* *
81671896 TTTTAATTATCCTGGTAGACTATCCCA
1 TTTT-ATTATCCTGATAAACTATCCCA
* *
81671923 TTTTATTTTCCTGATAAACTATCTCA
1 TTTTATTATCCTGATAAACTATCCCA
81671949 TGTTTATT
1 T-TTTATT
81671957 GTCCCAACAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 19 0.66
27 10 0.34
ACGTcount: A:0.25, C:0.18, G:0.08, T:0.49
Consensus pattern (26 bp):
TTTTATTATCCTGATAAACTATCCCA
Found at i:81672150 original size:40 final size:40
Alignment explanation
Indices: 81672093--81672250 Score: 208
Period size: 40 Copynumber: 4.0 Consensus size: 40
81672083 CACTTCTATC
* * * * *
81672093 ATGATACCATAACATCTTTCAACTATGGTCTTACCCGTTT
1 ATGATGCCATAAGATCTTTCAGCTATGGTCTTACTCATTT
* *
81672133 ATGATGCCATAAGATCTTTCAGCTATAGTTTTACTCATTT
1 ATGATGCCATAAGATCTTTCAGCTATGGTCTTACTCATTT
*
81672173 ATGATGCCATAAGATCTTTCAGCTATGGCCTTACTCATTT
1 ATGATGCCATAAGATCTTTCAGCTATGGTCTTACTCATTT
* * * *
81672213 ATGACGCTATAAAATCTTTCAGCTATGTTCTTACTCAT
1 ATGATGCCATAAGATCTTTCAGCTATGGTCTTACTCAT
81672251 ATTTGGCATA
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.39
Consensus pattern (40 bp):
ATGATGCCATAAGATCTTTCAGCTATGGTCTTACTCATTT
Found at i:81676265 original size:25 final size:25
Alignment explanation
Indices: 81676237--81676290 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
81676227 TTTCCTTTTC
* *
81676237 TTTT-TCTTTTCATTTTTAGTTTAGA
1 TTTTCTCTTTTC-TTTATAGGTTAGA
81676262 TTTTCTCTTTTCTTTATAGGTTAGA
1 TTTTCTCTTTTCTTTATAGGTTAGA
81676287 TTTT
1 TTTT
81676291 AGTTTTGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.15, C:0.09, G:0.09, T:0.67
Consensus pattern (25 bp):
TTTTCTCTTTTCTTTATAGGTTAGA
Found at i:81676850 original size:20 final size:20
Alignment explanation
Indices: 81676827--81676874 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
81676817 TCCCAACTCG
*
81676827 ATTTAGCTCACATGAGCTTA
1 ATTTAGCTCACATGAGCTCA
***
81676847 ATTTAGCTCGTTTGAGCTCA
1 ATTTAGCTCACATGAGCTCA
81676867 ATTTAGCT
1 ATTTAGCT
81676875 TACTTTAGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (20 bp):
ATTTAGCTCACATGAGCTCA
Found at i:81676866 original size:30 final size:30
Alignment explanation
Indices: 81676823--81676894 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 30
81676813 TTTTTCCCAA
81676823 CTCGATTT-AGCTCACA-TGAGCTTAATTTAG
1 CTCG-TTTGAGCTCA-ATTGAGCTTAATTTAG
* *
81676853 CTCGTTTGAGCTCAATTTAGCTTACTTTAG
1 CTCGTTTGAGCTCAATTGAGCTTAATTTAG
81676883 CTCGTTTGAGCT
1 CTCGTTTGAGCT
81676895 TGGCTTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
29 4 0.11
30 34 0.89
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (30 bp):
CTCGTTTGAGCTCAATTGAGCTTAATTTAG
Found at i:81679505 original size:40 final size:40
Alignment explanation
Indices: 81679461--81679552 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
81679451 TTTTAGCTAA
*
81679461 GGTCTTACTCATTTATGATGCCATAATATATTTCAGTTAT
1 GGTCTTACTCATTTATGATGCCATAACATATTTCAGTTAT
* * *
81679501 GGTCTTACTCATTTATGATTCCATAACATCTTTTAGTTAT
1 GGTCTTACTCATTTATGATGCCATAACATATTTCAGTTAT
81679541 GGTCTTACTCAT
1 GGTCTTACTCAT
81679553 GTTTGGCGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (40 bp):
GGTCTTACTCATTTATGATGCCATAACATATTTCAGTTAT
Found at i:81681590 original size:2 final size:2
Alignment explanation
Indices: 81681585--81682402 Score: 1636
Period size: 2 Copynumber: 409.0 Consensus size: 2
81681575 TACATATATA
81681585 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81681627 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81681669 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81681711 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81681753 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81681795 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81681837 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81681879 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81681921 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81681963 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81682005 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81682047 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81682089 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81682131 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81682173 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81682215 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81682257 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81682299 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81682341 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81682383 TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG
81682403 ATTTGTGTAT
Statistics
Matches: 816, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 816 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:81685799 original size:56 final size:54
Alignment explanation
Indices: 81685705--81685861 Score: 208
Period size: 56 Copynumber: 2.8 Consensus size: 54
81685695 TTTGATGACA
*
81685705 TGATACATGCTAGGTCCGGGAGCTTGTGTAGCCCTGTTGAGAGGCAT-GTAATTATG
1 TGATACATGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGT-A--ATG
* *
81685761 TGGTACACGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATG
1 TGATACATGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATG
* * *
81685815 TGATGCATGCTAGGTCCGGGTGCTCATATTTAGCCCTGTTGAGAGGC
1 TGATACATGCTAGGTCCGGGAGCT--TATGTAGCCCTGTTGAGAGGC
81685862 GTGCTATGTC
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
54 23 0.26
56 65 0.72
57 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (54 bp):
TGATACATGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATG
Found at i:81694415 original size:24 final size:24
Alignment explanation
Indices: 81694380--81694427 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
81694370 TCAATACCAA
* *
81694380 ATATTATGCTAATAAATGCTAAAT
1 ATATTATACTAATAAATACTAAAT
81694404 ATATTATACTAATAAATACTAAAT
1 ATATTATACTAATAAATACTAAAT
81694428 CTTCTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
ATATTATACTAATAAATACTAAAT
Found at i:81696508 original size:25 final size:25
Alignment explanation
Indices: 81696480--81696529 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
81696470 GAAAGGTGTT
81696480 AGCATGAAAACACCTAAAAGGACTA
1 AGCATGAAAACACCTAAAAGGACTA
81696505 AGCATGAAAACACCTAAAAGGACTA
1 AGCATGAAAACACCTAAAAGGACTA
81696530 TTTTGCATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.20, G:0.16, T:0.12
Consensus pattern (25 bp):
AGCATGAAAACACCTAAAAGGACTA
Found at i:81696692 original size:30 final size:30
Alignment explanation
Indices: 81696658--81696715 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81696648 TTTTCGATCA
* * *
81696658 TAGGGGTAAAATAGTTATTTTGCCAAAGTC
1 TAGGGGCAAAATAGTCATTTTACCAAAGTC
*
81696688 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATAGTCATTTTACCAAAG
81696716 ATGTGAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATAGTCATTTTACCAAAGTC
Found at i:81697249 original size:47 final size:47
Alignment explanation
Indices: 81697101--81697275 Score: 131
Period size: 47 Copynumber: 3.7 Consensus size: 47
81697091 CATTATGAGG
* * * *
81697101 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGATGTGA
* * * * * * *
81697149 GCTAGAGTAAGA-CGTGTCTGGGACA-CGCATCGACCTCA-ATAATGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAT-GTG--A
* *
81697196 GTCAGTGTAAGACCATGTCTGGGATATGGCATCGACTTGAGATGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTGA
* * ** *
81697243 GCCAGTGTAAAACTATGTCCAGGACATAGCATC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
81697276 AGCACCTTAC
Statistics
Matches: 94, Mismatches: 27, Indels: 13
0.70 0.20 0.10
Matches are distributed among these distances:
44 1 0.01
45 3 0.03
46 7 0.07
47 48 0.51
48 21 0.22
49 12 0.13
50 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTGA
Found at i:81700602 original size:32 final size:32
Alignment explanation
Indices: 81700566--81700694 Score: 258
Period size: 32 Copynumber: 4.0 Consensus size: 32
81700556 TGTAATTAAA
81700566 TAGAGCTGTAATCAGTAATTTAATTGTTTGGT
1 TAGAGCTGTAATCAGTAATTTAATTGTTTGGT
81700598 TAGAGCTGTAATCAGTAATTTAATTGTTTGGT
1 TAGAGCTGTAATCAGTAATTTAATTGTTTGGT
81700630 TAGAGCTGTAATCAGTAATTTAATTGTTTGGT
1 TAGAGCTGTAATCAGTAATTTAATTGTTTGGT
81700662 TAGAGCTGTAATCAGTAATTTAATTGTTTGGT
1 TAGAGCTGTAATCAGTAATTTAATTGTTTGGT
81700694 T
1 T
81700695 GAATGGAATG
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 97 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (32 bp):
TAGAGCTGTAATCAGTAATTTAATTGTTTGGT
Found at i:81700851 original size:16 final size:16
Alignment explanation
Indices: 81700832--81700874 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
81700822 GATTACTATT
81700832 AAATATAATTTAATAA
1 AAATATAATTTAATAA
*
81700848 AAATAATAA-ATAATAA
1 AAAT-ATAATTTAATAA
81700864 ATAATATAATT
1 A-AATATAATT
81700875 ATATTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATATAATTTAATAA
Found at i:81707347 original size:17 final size:18
Alignment explanation
Indices: 81707327--81707363 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
81707317 GAAGGTTTTT
81707327 ATAATAGTAAA-AA-TAAA
1 ATAATA-TAAAGAACTAAA
81707344 ATAATATAAAGAACTAAA
1 ATAATATAAAGAACTAAA
81707362 AT
1 AT
81707364 TTGAGAGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.22
17 8 0.44
18 6 0.33
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (18 bp):
ATAATATAAAGAACTAAA
Found at i:81709778 original size:12 final size:12
Alignment explanation
Indices: 81709757--81709785 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
81709747 ATGGTATGCT
81709757 TTGA-TATGAAA
1 TTGATTATGAAA
81709768 TTGATTATGAAA
1 TTGATTATGAAA
81709780 TTGATT
1 TTGATT
81709786 GGTGATATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (12 bp):
TTGATTATGAAA
Found at i:81711523 original size:35 final size:37
Alignment explanation
Indices: 81711484--81711564 Score: 105
Period size: 37 Copynumber: 2.2 Consensus size: 37
81711474 ACTCATGGAA
*
81711484 GAAGGCTTAC-AGAAG-TCCTGCTTCCACACAT-GAGT
1 GAAGGCTTACGAGAAGATCCTGCTTCCACACATAG-GG
* *
81711519 GAAGGTTTACGAGAGGATCCTGCTTCCACACATAGGG
1 GAAGGCTTACGAGAAGATCCTGCTTCCACACATAGGG
81711556 GAAGGCTTA
1 GAAGGCTTA
81711565 AGATAGGAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
35 9 0.23
36 4 0.10
37 25 0.64
38 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (37 bp):
GAAGGCTTACGAGAAGATCCTGCTTCCACACATAGGG
Found at i:81717251 original size:14 final size:13
Alignment explanation
Indices: 81717232--81717261 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
81717222 ACCAAACAAG
81717232 AAAAAAGTAAAAGA
1 AAAAAAGT-AAAGA
81717246 AAAAAAGTAAAGA
1 AAAAAAGTAAAGA
81717259 AAA
1 AAA
81717262 CACACAGTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (13 bp):
AAAAAAGTAAAGA
Found at i:81729256 original size:154 final size:152
Alignment explanation
Indices: 81728976--81729367 Score: 464
Period size: 154 Copynumber: 2.5 Consensus size: 152
81728966 AAAGGGGACT
* * * *
81728976 ATTAGCGGCGGTTTTGTAAAAACGCCGCAAAAGTGTTGAGGAAAACAACGCCGTGTATTGGTAAG
1 ATTAGCGGCGGTTTT-TAAAAACGCCGCAAAAGTTTTGA-GAAAACAACGTCGTGCATTGGTGAG
* * *
81729041 CTATAGAAGCATTAGCGGCGCTTCCTGAAAACACCGCAATATATCGAAAATTAGCGGCGTTTTTT
64 CTATAGAGGCATTAGCGGCGCTTCCTGAAAACACCGCAATATATCGAAAATTAGCAGCG-TTTTG
** *
81729106 CTAAAATGCCACAATAGGTGAAGC-
128 CTAAAACACCACAAAAGGTGAAGCA
* * *
81729130 ATTAGCGGCAGTTGTTTAAAAATGCCACAAAAGTTTTGAGAAATACAACGTCGTGCATTGGTGAG
1 ATTAGCGGCGGTT-TTTAAAAACGCCGCAAAAGTTTTGAGAAA-ACAACGTCGTGCATTGGTGAG
* * * * *
81729195 CTATAGAGGCTTTAGTGGCGCTTCCTGTAAACGCCGCAATATATCGAGAATTAGCAGCGTTTTGC
64 CTATAGAGGCATTAGCGGCGCTTCCTGAAAACACCGCAATATATCGAAAATTAGCAGCGTTTTGC
* *
81729260 TGAAACACCGCAAAAGGTGAAGCA
129 TAAAACACCACAAAAGGTGAAGCA
* * * * *
81729284 AATAGCGGCGGCTATTGAAAAACGCCGCAAAAGTTTTGAGCAAAACGACGTCGT-CTTTTGGTGA
1 ATTAGCGGCGG-TTTTTAAAAACGCCGCAAAAGTTTTGAG-AAAACAACGTCGTGC-ATTGGTGA
*
81729348 GCTATAGGGGCATTAGCGGC
63 GCTATAGAGGCATTAGCGGC
81729368 ATTTTTTCTG
Statistics
Matches: 201, Mismatches: 31, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
153 28 0.14
154 167 0.83
155 6 0.03
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.24
Consensus pattern (152 bp):
ATTAGCGGCGGTTTTTAAAAACGCCGCAAAAGTTTTGAGAAAACAACGTCGTGCATTGGTGAGCT
ATAGAGGCATTAGCGGCGCTTCCTGAAAACACCGCAATATATCGAAAATTAGCAGCGTTTTGCTA
AAACACCACAAAAGGTGAAGCA
Found at i:81730101 original size:7 final size:7
Alignment explanation
Indices: 81730091--81730151 Score: 63
Period size: 7 Copynumber: 9.0 Consensus size: 7
81730081 TTGGGGATAT
81730091 GGTTTAG
1 GGTTTAG
*
81730098 GGTTTAA
1 GGTTTAG
*
81730105 GGTTTAT
1 GGTTTAG
*
81730112 GATTTAG
1 GGTTTAG
81730119 GG-TTA-
1 GGTTTAG
*
81730124 GGTTTAT
1 GGTTTAG
*
81730131 GGTTTAT
1 GGTTTAG
81730138 GGTTTAG
1 GGTTTAG
81730145 GGTTTAG
1 GGTTTAG
81730152 AGTATAATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
5 2 0.04
6 6 0.13
7 38 0.83
ACGTcount: A:0.18, C:0.00, G:0.34, T:0.48
Consensus pattern (7 bp):
GGTTTAG
Found at i:81730110 original size:14 final size:14
Alignment explanation
Indices: 81730066--81730151 Score: 61
Period size: 14 Copynumber: 6.4 Consensus size: 14
81730056 TGTGAACAGT
*
81730066 TTTAGGGTTTAAAG
1 TTTAGGGTTTAAGG
** *
81730080 TTT-GGGGATATGG
1 TTTAGGGTTTAAGG
81730093 TTTAGGGTTTAAGG
1 TTTAGGGTTTAAGG
* *
81730107 TTTATGATTT-AGG
1 TTTAGGGTTTAAGG
* *
81730120 GTTA-GGTTTATGG
1 TTTAGGGTTTAAGG
* *
81730133 TTTATGGTTTAGGG
1 TTTAGGGTTTAAGG
81730147 TTTAG
1 TTTAG
81730152 AGTATAATTT
Statistics
Matches: 54, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
12 4 0.07
13 20 0.37
14 30 0.56
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.47
Consensus pattern (14 bp):
TTTAGGGTTTAAGG
Found at i:81730134 original size:26 final size:26
Alignment explanation
Indices: 81730098--81730148 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
81730088 TATGGTTTAG
81730098 GGTTTAAGGTTTATGATTTAGGGTTA
1 GGTTTAAGGTTTATGATTTAGGGTTA
* *
81730124 GGTTTATGGTTTATGGTTTAGGGTT
1 GGTTTAAGGTTTATGATTTAGGGTT
81730149 TAGAGTATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (26 bp):
GGTTTAAGGTTTATGATTTAGGGTTA
Found at i:81730197 original size:15 final size:15
Alignment explanation
Indices: 81730177--81730212 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
81730167 TTTAATTTAG
81730177 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
81730192 AAGATAAATATATAT
1 AAGATAAATATAAAT
81730207 AA-ATAA
1 AAGATAA
81730213 TTATTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:81731081 original size:45 final size:44
Alignment explanation
Indices: 81731032--81731125 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
81731022 CCTCCCCTAA
*
81731032 TTCCCCAAACCCGAAATCCCTAACATTTTCCCCAAATCCCCTTTT
1 TTCCCCAAACCC-AAATCCCTAACATTTTCCCCAAATCCCCTCTT
* ** **
81731077 TTCCCCATAGTCATTTCCCTAACATTTTCCCCAAATCCCCTCTT
1 TTCCCCAAACCCAAATCCCTAACATTTTCCCCAAATCCCCTCTT
81731121 TTCCC
1 TTCCC
81731126 TATACTTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 34 0.79
45 9 0.21
ACGTcount: A:0.22, C:0.43, G:0.02, T:0.33
Consensus pattern (44 bp):
TTCCCCAAACCCAAATCCCTAACATTTTCCCCAAATCCCCTCTT
Found at i:81731138 original size:44 final size:44
Alignment explanation
Indices: 81731048--81731142 Score: 145
Period size: 44 Copynumber: 2.2 Consensus size: 44
81731038 AAACCCGAAA
* *
81731048 TCCCTAACATTTTCCCCAAATCCCCTTTTTTCCCCATAGTCATT
1 TCCCTAACATTTTCCCCAAATCCCCTCTTTTCCCCATACTCATT
* **
81731092 TCCCTAACATTTTCCCCAAATCCCCTCTTTTCCCTATACTTTTT
1 TCCCTAACATTTTCCCCAAATCCCCTCTTTTCCCCATACTCATT
81731136 TCCCTAA
1 TCCCTAA
81731143 ATCTGTTCCC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.20, C:0.39, G:0.01, T:0.40
Consensus pattern (44 bp):
TCCCTAACATTTTCCCCAAATCCCCTCTTTTCCCCATACTCATT
Found at i:81732311 original size:13 final size:13
Alignment explanation
Indices: 81732295--81732324 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
81732285 AGTGCTGCAA
81732295 AAAAATGCTTATG
1 AAAAATGCTTATG
*
81732308 AAAAATGCTTTTG
1 AAAAATGCTTATG
81732321 AAAA
1 AAAA
81732325 GCTTGGTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (13 bp):
AAAAATGCTTATG
Found at i:81740117 original size:21 final size:21
Alignment explanation
Indices: 81740080--81740119 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
81740070 CTGCTCAAGG
*
81740080 GAAGCCGATTGATCCATCACA
1 GAAGCCGATTCATCCATCACA
81740101 GAAGCCGAATTCA-CCATCA
1 GAAGCCG-ATTCATCCATCA
81740120 AGACTGAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.35, C:0.30, G:0.17, T:0.17
Consensus pattern (21 bp):
GAAGCCGATTCATCCATCACA
Found at i:81743109 original size:40 final size:40
Alignment explanation
Indices: 81743011--81743273 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
81743001 TCCTCGTTCA
* * * ** *
81743011 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
81743050 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81743090 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81743130 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
81743170 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
81743210 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
81743250 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81743274 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:81747359 original size:13 final size:13
Alignment explanation
Indices: 81747341--81747365 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81747331 AACGAATCCA
81747341 GACACGGTCGTGC
1 GACACGGTCGTGC
81747354 GACACGGTCGTG
1 GACACGGTCGTG
81747366 TGTACCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.40, T:0.16
Consensus pattern (13 bp):
GACACGGTCGTGC
Found at i:81753157 original size:40 final size:40
Alignment explanation
Indices: 81753074--81753336 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
81753064 TTGAATGCTG
* * * * * *
81753074 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
81753114 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
81753154 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
81753194 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
81753234 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
81753274 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
81753313 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81753337 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:81753356 original size:79 final size:80
Alignment explanation
Indices: 81753113--81753371 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
81753103 AAGTGAATAT
* * * * * *
81753113 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
81753177 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
81753193 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
81753258 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
81753273 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
81753337 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
81753352 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
81753372 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:81761109 original size:40 final size:40
Alignment explanation
Indices: 81761026--81761288 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
81761016 TTGAATGCTG
* * * * * *
81761026 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
81761066 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
81761106 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
81761146 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
81761186 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
81761226 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
81761265 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81761289 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:81761308 original size:79 final size:80
Alignment explanation
Indices: 81761065--81761323 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
81761055 AAGTGAATAT
* * * * * *
81761065 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
81761129 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
81761145 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
81761210 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
81761225 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
81761289 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
81761304 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
81761324 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:81771722 original size:40 final size:40
Alignment explanation
Indices: 81771639--81771901 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
81771629 TTGAATGCTG
* * * * * *
81771639 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
81771679 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
81771719 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
81771759 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
81771799 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
81771839 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
81771878 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81771902 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:81771921 original size:79 final size:80
Alignment explanation
Indices: 81771678--81771936 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
81771668 AAGTGAATAT
* * * * * *
81771678 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
81771742 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
81771758 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
81771823 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
81771838 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
81771902 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
81771917 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
81771937 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:81779745 original size:39 final size:39
Alignment explanation
Indices: 81779581--81779763 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
81779571 TTGAATGCTG
* * * * * * *
81779581 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
81779621 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
81779661 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
81779701 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
81779740 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
81779764 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:81779783 original size:79 final size:80
Alignment explanation
Indices: 81779617--81779798 Score: 183
Period size: 79 Copynumber: 2.3 Consensus size: 80
81779607 GCTAAGTGAA
* * *
81779617 TATATCCGGATTAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGC
1 TATATCCGGATTAAGATCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
** ** *
81779682 ATTCGTGCGAGTTGT
66 ATTCGAACGAGGAGC
* * * * * *
81779697 TAAATCCGGGTTATG-TCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 TATATCCGGATTAAGAT-CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
*
81779760 CATTTGAACGAGGAGC
65 CATTCGAACGAGGAGC
81779776 TATATCCGG-TTAA-ATTCCGAAGG
1 TATATCCGGATTAAGA-TCCGAAGG
81779799 TACGTGATTT
Statistics
Matches: 82, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
78 10 0.12
79 53 0.65
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGATTAAGATCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:81782385 original size:58 final size:56
Alignment explanation
Indices: 81782321--81782436 Score: 151
Period size: 58 Copynumber: 2.0 Consensus size: 56
81782311 TGAATGTGAC
* *
81782321 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAAGGGGCCATAGACAGGTGATG
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCCTAAGGGGCCAGAGACAGGT-ATG
* * * * *
81782379 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAGATACAGGTATG
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAAGGGGCCAGAGACAGGTATG
81782435 TG
1 TG
81782437 AATTTGTTTG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
56 5 0.10
57 22 0.43
58 24 0.47
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.25
Consensus pattern (56 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAAGGGGCCAGAGACAGGTATG
Found at i:81782419 original size:28 final size:28
Alignment explanation
Indices: 81782308--81782422 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 28
81782298 GTAAGCATGA
* *
81782308 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
* *
81782336 ATATAAATGTGATTTGGGCCTAAGGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
*
81782365 ATA-GACAGGTGATGTGGGCCTAATGGGCC
1 ATATGA-ATGTGAT-TGGGCCTAATGGGCC
* *
81782394 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
81782422 A
1 A
81782423 GATACAGGTA
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
28 28 0.38
29 44 0.59
30 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:81785777 original size:39 final size:39
Alignment explanation
Indices: 81785733--81785860 Score: 166
Period size: 39 Copynumber: 3.3 Consensus size: 39
81785723 ATATATGGTG
81785733 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
81785772 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
* * * ** * ** * *
81785811 ATCATATTCGAACTTCGGGTTCGCCGGCTATGTGCTGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
81785850 ATTATATCCGG
1 ATTATATCCGG
81785861 GCTAATAGTC
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (39 bp):
ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
Found at i:81816932 original size:40 final size:40
Alignment explanation
Indices: 81816884--81817191 Score: 589
Period size: 40 Copynumber: 7.7 Consensus size: 40
81816874 GCAAACACAT
* *
81816884 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
81816924 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
81816964 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
*
81817004 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
81817044 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
81817084 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
81817124 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
81817164 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
81817192 TCCAATGCTC
Statistics
Matches: 264, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 264 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
Found at i:81822599 original size:19 final size:20
Alignment explanation
Indices: 81822561--81822599 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
81822551 TGTTTGGTTG
**
81822561 TGAATGAATTGTATTTGAAA
1 TGAATGAATTGTATGAGAAA
81822581 TGAAT-AATTGTATGAGAAA
1 TGAATGAATTGTATGAGAAA
81822600 ATGTATGTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.36
Consensus pattern (20 bp):
TGAATGAATTGTATGAGAAA
Found at i:81823360 original size:14 final size:14
Alignment explanation
Indices: 81823341--81823370 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81823331 ACTCCTTCAT
*
81823341 TCCCTCATTCATCA
1 TCCCTCATCCATCA
81823355 TCCCTCATCCATCA
1 TCCCTCATCCATCA
81823369 TC
1 TC
81823371 ATTCTCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:81825642 original size:106 final size:106
Alignment explanation
Indices: 81825457--81825917 Score: 886
Period size: 106 Copynumber: 4.3 Consensus size: 106
81825447 CCCCATATCA
*
81825457 GATTACCTGTCCGGGCTAAATCCATAATGCACACATATTCTTCGAGAGGCTTGATCATTCAAGGA
1 GATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCGAGAGGCTTGATCATTCAAGGA
81825522 ACACCCGTCTGGGCTAGATCCTTTTTATAATTGAGATCACG
66 ACACCCGTCTGGGCTAGATCCTTTTTATAATTGAGATCACG
81825563 GATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCGAGAGGCTTGATCATTCAAGGA
1 GATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCGAGAGGCTTGATCATTCAAGGA
81825628 ACACCCGTCTGGGCTAGATCCTTTTTATAATTGAGATCACG
66 ACACCCGTCTGGGCTAGATCCTTTTTATAATTGAGATCACG
81825669 GATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCGAGAGGCTTGATCATTCAAGGA
1 GATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCGAGAGGCTTGATCATTCAAGGA
81825734 ACACCCGTCTGGGCTAGATCCTTTTTATAATTGAGATCACG
66 ACACCCGTCTGGGCTAGATCCTTTTTATAATTGAGATCACG
81825775 GATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCGAGAGGCTTGATCATTCAAGGA
1 GATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCGAGAGGCTTGATCATTCAAGGA
81825840 ACACCCGTCTGGGCTAGATCCTTTTTATAATTGAGATCACG
66 ACACCCGTCTGGGCTAGATCCTTTTTATAATTGAGATCACG
* *
81825881 GATTACCCGTCCGGGCTAAATCCTTACTGCAACACAT
1 GATTACCCGTCCGGGCTAAATCCATAATGC-ACACAT
81825918 GCAGGATCTC
Statistics
Matches: 351, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
106 345 0.98
107 6 0.02
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (106 bp):
GATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCGAGAGGCTTGATCATTCAAGGA
ACACCCGTCTGGGCTAGATCCTTTTTATAATTGAGATCACG
Found at i:81826710 original size:15 final size:14
Alignment explanation
Indices: 81826686--81826716 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
81826676 GAGCTTGGAA
81826686 AGCTTGAAAACCCT
1 AGCTTGAAAACCCT
81826700 AGCTATGAAAACCCT
1 AGCT-TGAAAACCCT
81826715 AG
1 AG
81826717 AAATTTCAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.19
Consensus pattern (14 bp):
AGCTTGAAAACCCT
Found at i:81829236 original size:40 final size:39
Alignment explanation
Indices: 81829205--81829414 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
81829195 GGACTAAGAT
* *
81829205 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
81829245 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
81829285 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
81829325 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
81829365 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
81829404 CCGAAGGCATT
1 CCGAAGGCATT
81829415 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:81829368 original size:120 final size:120
Alignment explanation
Indices: 81829152--81829414 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
81829142 TTGAATGCTG
* *
81829152 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
81829216 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
81829272 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
81829335 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
81829391 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
81829415 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:81829434 original size:79 final size:80
Alignment explanation
Indices: 81829153--81829449 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
81829143 TGAATGCTGT
* ** * * * **
81829153 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
81829216 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
81829233 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
81829297 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
81829313 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
81829377 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
81829392 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
81829450 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:81833086 original size:86 final size:86
Alignment explanation
Indices: 81832988--81833155 Score: 273
Period size: 86 Copynumber: 2.0 Consensus size: 86
81832978 TGAAGACAAA
* *
81832988 AGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCATCCATCGATTGC
1 AGATCTTGCCTTCCTACATTAACAGCAAAGCAGATCAAAAACAAAGCCTTGCATCCATCGATTGC
81833053 AGTGGAGCTAGTTAAAGAAGC
66 AGTGGAGCTAGTTAAAGAAGC
* * *
81833074 AGATCTTGCCTTCCTGCATTAACAGCAAAGCAGATCAAAAACAAAGCCTTGCCTCCATCGGTTGC
1 AGATCTTGCCTTCCTACATTAACAGCAAAGCAGATCAAAAACAAAGCCTTGCATCCATCGATTGC
* *
81833139 ATTGGAGCTGGTTAAAG
66 AGTGGAGCTAGTTAAAG
81833156 GTTACAGATT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 75 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (86 bp):
AGATCTTGCCTTCCTACATTAACAGCAAAGCAGATCAAAAACAAAGCCTTGCATCCATCGATTGC
AGTGGAGCTAGTTAAAGAAGC
Found at i:81833400 original size:43 final size:44
Alignment explanation
Indices: 81833300--81833405 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
81833290 GATCTTGTCC
* * *
81833300 CCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCT
1 CCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAGATCCTATCT
* * **
81833344 CCCCG-AGATTACAGCGGAGCAGATCGAAGACA-CTATCCTATCT
1 CCCTGAAG-TTACAGTGGAGCAGATCGAAGACAGAGATCCTATCT
81833387 CCCTGAAGTTACAGTGGAG
1 CCCTGAAGTTACAGTGGAG
81833406 TGGGTTAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
43 24 0.47
44 27 0.53
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.22
Consensus pattern (44 bp):
CCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAGATCCTATCT
Found at i:81837312 original size:39 final size:39
Alignment explanation
Indices: 81837201--81837330 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
81837191 GGACTAAGAT
* * *
81837201 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
**
81837241 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
81837281 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
81837320 CCGAAGGCATT
1 CCGAAGGCATT
81837331 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.47
40 42 0.53
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:81837350 original size:79 final size:79
Alignment explanation
Indices: 81837201--81837365 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
81837191 GGACTAAGAT
* * * ** ** *
81837201 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
**
81837266 AATCCGGGTTATGTC
66 AATCC-GGTTAAATC
* * * *
81837281 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
81837345 TATCCGGTTAAATC
66 AATCCGGTTAAATC
81837359 CCGAAGG
1 CCGAAGG
81837366 TACGTGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
78 14 0.20
79 49 0.70
80 7 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGTTAAATC
Found at i:81847477 original size:32 final size:30
Alignment explanation
Indices: 81847413--81847497 Score: 77
Period size: 32 Copynumber: 2.8 Consensus size: 30
81847403 GTTGAGGTAT
81847413 GGGTTCAATTGTAAA-ATTGTGAAAAGTAAAAA
1 GGGTTCAATTGTAAATA-T-T-AAAAGTAAAAA
*
81847445 GGGTTCAATTGTAAATATTCAAAAGTTTAAAA
1 GGGTTCAATTGTAAATATT-AAAAG-TAAAAA
* *
81847477 --GTTAAATTGAAAATATTAAAA
1 GGGTTCAATTGTAAATATTAAAA
81847498 TTTGAAGGAC
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
29 4 0.09
30 15 0.32
31 6 0.13
32 21 0.45
33 1 0.02
ACGTcount: A:0.48, C:0.04, G:0.16, T:0.32
Consensus pattern (30 bp):
GGGTTCAATTGTAAATATTAAAAGTAAAAA
Found at i:81849603 original size:27 final size:27
Alignment explanation
Indices: 81849570--81849629 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
81849560 CAAAACTGTC
* *
81849570 ATTTTACCCTACAGGGGTATTTCAGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
* **
81849597 ATTTTACACTACAAGGTTATTTTGGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
81849624 ATTTTA
1 ATTTTA
81849630 TAAATCGGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAGTA
Found at i:81850718 original size:13 final size:13
Alignment explanation
Indices: 81850700--81850727 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81850690 AACAAACGAG
81850700 AGAAAATAAGGAC
1 AGAAAATAAGGAC
81850713 AGAAAATAAGGAC
1 AGAAAATAAGGAC
81850726 AG
1 AG
81850728 GAAGTATAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.07, G:0.25, T:0.07
Consensus pattern (13 bp):
AGAAAATAAGGAC
Found at i:81861202 original size:27 final size:27
Alignment explanation
Indices: 81861159--81861230 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
81861149 TCACCAAACC
** * *
81861159 CTTTCATATTTTTCCATGAAGGCTACT
1 CTTTCATATTTCACCATGAAAGATACT
81861186 CATTT-ATATTTCACCATGAAAGATACT
1 C-TTTCATATTTCACCATGAAAGATACT
*
81861213 CTTTCATATTTCTCCATG
1 CTTTCATATTTCACCATG
81861231 TAACACCCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
26 3 0.08
27 32 0.84
28 3 0.08
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.43
Consensus pattern (27 bp):
CTTTCATATTTCACCATGAAAGATACT
Found at i:81861829 original size:34 final size:34
Alignment explanation
Indices: 81861790--81861865 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
81861780 AGCTGGCTTA
**
81861790 AGCCCA-TATCAGTAGCAATATTAGTGTGGGCCTT
1 AGCCCATTA-CAGTAGCAATAACAGTGTGGGCCTT
* *
81861824 AGCCCATTACAGTAGTATTAACAGTGTGGGCCTT
1 AGCCCATTACAGTAGCAATAACAGTGTGGGCCTT
81861858 AGCCCATT
1 AGCCCATT
81861866 TTAGTACAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 35 0.95
35 2 0.05
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (34 bp):
AGCCCATTACAGTAGCAATAACAGTGTGGGCCTT
Found at i:81869478 original size:34 final size:34
Alignment explanation
Indices: 81869439--81869514 Score: 109
Period size: 34 Copynumber: 2.2 Consensus size: 34
81869429 AGCTGGCATA
*
81869439 AGCCCA-TATCAGTAGCAATATCAGTGTGGGCCTT
1 AGCCCATTA-CAGTAGCAATAACAGTGTGGGCCTT
* *
81869473 AGCCCATTACAGTAGTATTAACAGTGTGGGCCTT
1 AGCCCATTACAGTAGCAATAACAGTGTGGGCCTT
81869507 AGCCCATT
1 AGCCCATT
81869515 TTAGTACAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 36 0.95
35 2 0.05
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (34 bp):
AGCCCATTACAGTAGCAATAACAGTGTGGGCCTT
Found at i:81871689 original size:27 final size:27
Alignment explanation
Indices: 81871645--81871741 Score: 131
Period size: 27 Copynumber: 3.6 Consensus size: 27
81871635 ACACTCCACA
* *
81871645 AAGGCTACTTTTTTATATTTCGCCATG
1 AAGGCTACTCTTTCATATTTCGCCATG
* *
81871672 AAGGCTACTCTTTCATATTTCACGATG
1 AAGGCTACTCTTTCATATTTCGCCATG
* *
81871699 AAGGCTGCTCTTTCATATTTTGCCATG
1 AAGGCTACTCTTTCATATTTCGCCATG
*
81871726 AATGCTACTCTTTCAT
1 AAGGCTACTCTTTCAT
81871742 GGCATGTTTT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (27 bp):
AAGGCTACTCTTTCATATTTCGCCATG
Done.