Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 244 of 284
Found at i:81873829 original size:20 final size:20
Alignment explanation
Indices: 81873797--81873850 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
81873787 AAATAGGGTC
*
81873797 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCATGTGGCTTGGG
*
81873817 ACATGCCCATGTGGCTTGGG
1 ACACGCCCATGTGGCTTGGG
81873837 ACACGCCCATGTGG
1 ACACGCCCATGTGG
81873851 GTAGGTCGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.15, C:0.30, G:0.35, T:0.20
Consensus pattern (20 bp):
ACACGCCCATGTGGCTTGGG
Found at i:81874692 original size:24 final size:23
Alignment explanation
Indices: 81874662--81874715 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
81874652 ATGAAGTAAT
81874662 TTAACATAAATGTCA-TAATCAAAC
1 TTAACATAAATGTCATTAA--AAAC
* *
81874686 TTAACATAGATGTTATTAAAAAC
1 TTAACATAAATGTCATTAAAAAC
81874709 TTAACAT
1 TTAACAT
81874716 CATAACTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 11 0.41
24 13 0.48
25 3 0.11
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (23 bp):
TTAACATAAATGTCATTAAAAAC
Found at i:81874961 original size:42 final size:42
Alignment explanation
Indices: 81874914--81875035 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
81874904 TACCATACTA
* * * *
81874914 ATGCCATATCCCAGATGTGGTCTTACATG-GGATCTCATATCG
1 ATGCCATATCCTAGATATGGTCTTACACGAAG-TCTCATATCG
* * *
81874956 ATGCCAATAGCCTAGCTATGGTCTTACACGAAGTCTCATATTG
1 ATGCC-ATATCCTAGATATGGTCTTACACGAAGTCTCATATCG
*
81874999 ATGCCATATCCTAGATATGGTGTTACACGCAA-TCTCA
1 ATGCCATATCCTAGATATGGTCTTACACG-AAGTCTCA
81875036 ACTAACCTTA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 31 0.46
43 35 0.52
44 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:81879186 original size:12 final size:12
Alignment explanation
Indices: 81879158--81879191 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
81879148 GTAGTTTAGC
81879158 TTTAGTTTTTC-
1 TTTAGTTTTTCT
81879169 -TTAGTTTTTCT
1 TTTAGTTTTTCT
81879180 TTTAGTTTTTCT
1 TTTAGTTTTTCT
81879192 ACACTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.48
12 11 0.52
ACGTcount: A:0.09, C:0.09, G:0.09, T:0.74
Consensus pattern (12 bp):
TTTAGTTTTTCT
Found at i:81905089 original size:24 final size:24
Alignment explanation
Indices: 81905062--81905109 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
81905052 AAAGAAATTT
*
81905062 TGCAATTTAGTCCATAATCTTTTC
1 TGCAATTTAGTCCACAATCTTTTC
81905086 TGCAATTTAGTCCACAATCTTTTC
1 TGCAATTTAGTCCACAATCTTTTC
81905110 CTTTCCCCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.08, T:0.44
Consensus pattern (24 bp):
TGCAATTTAGTCCACAATCTTTTC
Found at i:81916641 original size:16 final size:17
Alignment explanation
Indices: 81916620--81916658 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
81916610 CTTGTAACGC
81916620 CCCAAAAATCTCGAAA-
1 CCCAAAAATCTCGAAAT
81916636 CCCAAAAATCTCGAAAT
1 CCCAAAAATCTCGAAAT
81916653 CCCAAA
1 CCCAAA
81916659 CTTTCTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.49, C:0.33, G:0.05, T:0.13
Consensus pattern (17 bp):
CCCAAAAATCTCGAAAT
Found at i:81921969 original size:16 final size:16
Alignment explanation
Indices: 81921948--81921979 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81921938 GTTGTAACGC
*
81921948 CCTAAAAATCCCGAAA
1 CCTAAAAACCCCGAAA
81921964 CCTAAAAACCCCGAAA
1 CCTAAAAACCCCGAAA
81921980 TCCTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCTAAAAACCCCGAAA
Found at i:81923549 original size:28 final size:29
Alignment explanation
Indices: 81923505--81923565 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 29
81923495 GTGAGCATGA
*
81923505 ATATGAATGTGACTGGGCCTAATGGGCC-
1 ATATGAATATGACTGGGCCTAATGGGCCG
* *
81923533 ATATGAATATGATTGGGCTTAATGGGCCG
1 ATATGAATATGACTGGGCCTAATGGGCCG
81923562 ATAT
1 ATAT
81923566 AGGTATGTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.86
29 4 0.14
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATATGACTGGGCCTAATGGGCCG
Found at i:81924158 original size:19 final size:19
Alignment explanation
Indices: 81924112--81924159 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
81924102 GTATATATTT
81924112 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
81924130 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
*
81924149 TAAGTTTTATT
1 TAAATTTTATT
81924160 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:81924221 original size:43 final size:43
Alignment explanation
Indices: 81924173--81924265 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
81924163 ATTCTAGAAA
81924173 TATTTT-TATTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
* * *
81924216 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
81924259 TATTTTC
1 TATTTTC
81924266 CCAATTAGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
Found at i:81927979 original size:19 final size:19
Alignment explanation
Indices: 81927933--81927980 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
81927923 GTATATATTT
81927933 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
81927951 TAAATCTTATTTGGGTAGA
1 TAAATTTTATTTAGGTAGA
*
81927970 TAAGTTTTATT
1 TAAATTTTATT
81927981 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:81928042 original size:43 final size:43
Alignment explanation
Indices: 81927994--81928086 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
81927984 ATTCTAGAAA
81927994 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
81928037 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
81928080 TATTTTC
1 TATTTTC
81928087 CCAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:81929725 original size:27 final size:27
Alignment explanation
Indices: 81929670--81929726 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
81929660 TCTGATACTA
* *
81929670 ATTTTGTACTGGGCTTAGGCCCACCTG
1 ATTTTGTAATGGGCTTAGGCCCAACTG
*
81929697 ATTTTGTTAATGGGC-TAGGCCCAATTG
1 ATTTTG-TAATGGGCTTAGGCCCAACTG
81929724 ATT
1 ATT
81929727 CTGATGAGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (27 bp):
ATTTTGTAATGGGCTTAGGCCCAACTG
Found at i:81944049 original size:176 final size:176
Alignment explanation
Indices: 81943744--81944083 Score: 599
Period size: 176 Copynumber: 1.9 Consensus size: 176
81943734 CATTTTCCTA
* * * *
81943744 GTCTATTAACCGTAATCATTGTTTCCTATCTCTCCTGGGCTTAACTGTCCTATCTGCAATTTCAT
1 GTCTATTAACCGCAATCATTGTTTCCTATCTCTCCTGAGCTTAACTATCCTATCTACAATTTCAT
* *
81943809 TCTCTTCTCTTGGGATATGTTGAAGATCCCAGTGACTTAGCAGCTTTAACAGCAAAACAATTCTC
66 TCTCTTCTCTTGGGATATGCTGAAGATCCCAGTGACTTAGCAGCTTTAACAACAAAACAATTCTC
* *
81943874 ATAATTAAGGCAGACTTAGAGCCTTTCTGAACTCATGAAGATGCTG
131 ATAATTAAGGCAGAATTAAAGCCTTTCTGAACTCATGAAGATGCTG
81943920 GTCTATTAACCGCAATCATTGTTTCCTATCTCTCCTGAGCTTAACTATCCTATCTACAATTTCAT
1 GTCTATTAACCGCAATCATTGTTTCCTATCTCTCCTGAGCTTAACTATCCTATCTACAATTTCAT
*
81943985 TCTCTTCTCTTGGGATATGCTGAAGATCCCAGTGACTTAGCAGCTTTAACAACAAAAGAATTCTC
66 TCTCTTCTCTTGGGATATGCTGAAGATCCCAGTGACTTAGCAGCTTTAACAACAAAACAATTCTC
81944050 ATAATTAAGGCAGAATTAAAGCCTTTCTGAACTC
131 ATAATTAAGGCAGAATTAAAGCCTTTCTGAACTC
81944084 CTTCATGAAT
Statistics
Matches: 155, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
176 155 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (176 bp):
GTCTATTAACCGCAATCATTGTTTCCTATCTCTCCTGAGCTTAACTATCCTATCTACAATTTCAT
TCTCTTCTCTTGGGATATGCTGAAGATCCCAGTGACTTAGCAGCTTTAACAACAAAACAATTCTC
ATAATTAAGGCAGAATTAAAGCCTTTCTGAACTCATGAAGATGCTG
Found at i:81950527 original size:3 final size:3
Alignment explanation
Indices: 81950519--81950549 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
81950509 TATACTGTTG
81950519 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
81950550 TTATAGCGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:81958085 original size:43 final size:43
Alignment explanation
Indices: 81958036--81958122 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
81958026 GATATGGGGG
*
81958036 GGGGGGGGAAGTGTTGGCTCATTCGAAGTGGGAGATCAGCAGTT
1 GGGGGGTG-AGTGTTGGCTCATTCGAAGTGGGAGATCAGCAGTT
81958080 GGGGGGTGAGTGTTGGCTCATTCGAAGTGGGAGATCAGCAGTT
1 GGGGGGTGAGTGTTGGCTCATTCGAAGTGGGAGATCAGCAGTT
81958123 TCCCCAATCC
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 35 0.83
44 7 0.17
ACGTcount: A:0.20, C:0.11, G:0.45, T:0.24
Consensus pattern (43 bp):
GGGGGGTGAGTGTTGGCTCATTCGAAGTGGGAGATCAGCAGTT
Found at i:81958425 original size:16 final size:17
Alignment explanation
Indices: 81958396--81958430 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
81958386 CTCATTGTGA
81958396 AAAAAAAAAGAAAAAGG
1 AAAAAAAAAGAAAAAGG
*
81958413 AAAAGAAAA-AAAAAGG
1 AAAAAAAAAGAAAAAGG
81958429 AA
1 AA
81958431 TTATATAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAGG
Found at i:81960717 original size:22 final size:21
Alignment explanation
Indices: 81960690--81960730 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
81960680 AATATAATAT
81960690 TATTAAAGAATGTTA-TATTTTC
1 TATTAAA-AA-GTTATTATTTTC
81960712 TATTAAAAAGTTATTATTT
1 TATTAAAAAGTTATTATTT
81960731 AATTTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 7 0.39
22 7 0.39
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.51
Consensus pattern (21 bp):
TATTAAAAAGTTATTATTTTC
Found at i:81961902 original size:199 final size:199
Alignment explanation
Indices: 81961562--81961962 Score: 775
Period size: 199 Copynumber: 2.0 Consensus size: 199
81961552 CCCTTACTTA
81961562 GTTCATTGCAAGGTGCCTGTTCATACAGTTGGAGTTCGGTAGTACTAGCCATGCTATATCGTGAG
1 GTTCATTGCAAGGTGCCTGTTCATACAGTTGGAGTTCGGTAGTACTAGCCATGCTATATCGTGAG
*
81961627 CTTTGTCGGGCAACAAAGCACAGAACTGTCGATTTAGGTGGCTACCTAATACTGCTACAATCTTG
66 CTTTGCCGGGCAACAAAGCACAGAACTGTCGATTTAGGTGGCTACCTAATACTGCTACAATCTTG
81961692 GGCGCTATACAAAATGTTATTTCTGGCATCAGTAGGTCACTAAATACATGTGTTCCCACTTGTAA
131 GGCGCTATACAAAATGTTATTTCTGGCATCAGTAGGTCACTAAATACATGTGTTCCCACTTGTAA
81961757 ATAG
196 ATAG
*
81961761 GTTCATTGCAATGTGCCTGTTCATACAGTTGGAGTTCGGTAGTACTAGCCATGCTATATCGTGAG
1 GTTCATTGCAAGGTGCCTGTTCATACAGTTGGAGTTCGGTAGTACTAGCCATGCTATATCGTGAG
*
81961826 CTTTGCCGGGCAACAAAGCACAGAACTGTCGATTTAGGTGGCTACCTAATATTGCTACAATCTTG
66 CTTTGCCGGGCAACAAAGCACAGAACTGTCGATTTAGGTGGCTACCTAATACTGCTACAATCTTG
81961891 GGCGCTATACAAAATGTTATTTCTGGCATCAGTAGGTCACTAAATACATGTGTTCCCACTTGTAA
131 GGCGCTATACAAAATGTTATTTCTGGCATCAGTAGGTCACTAAATACATGTGTTCCCACTTGTAA
81961956 ATAG
196 ATAG
81961960 GTT
1 GTT
81961963 AAAAAAAACT
Statistics
Matches: 199, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
199 199 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (199 bp):
GTTCATTGCAAGGTGCCTGTTCATACAGTTGGAGTTCGGTAGTACTAGCCATGCTATATCGTGAG
CTTTGCCGGGCAACAAAGCACAGAACTGTCGATTTAGGTGGCTACCTAATACTGCTACAATCTTG
GGCGCTATACAAAATGTTATTTCTGGCATCAGTAGGTCACTAAATACATGTGTTCCCACTTGTAA
ATAG
Found at i:81963630 original size:28 final size:28
Alignment explanation
Indices: 81963591--81963648 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
81963581 AAATAAATGT
81963591 AAAATATGGACTAATAAGGACTCATTGA
1 AAAATATGGACTAATAAGGACTCATTGA
81963619 AAAATATGGACTAATAAGGACTCATTGA
1 AAAATATGGACTAATAAGGACTCATTGA
81963647 AA
1 AA
81963649 TTGCAAAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.24
Consensus pattern (28 bp):
AAAATATGGACTAATAAGGACTCATTGA
Found at i:81964156 original size:22 final size:24
Alignment explanation
Indices: 81964055--81964190 Score: 97
Period size: 23 Copynumber: 5.8 Consensus size: 24
81964045 GGACTCACCA
*
81964055 CAGCTTGTAT-GAGCTTACCGATATAT
1 CAGCTCGTATAGAGCTTACCG-T-T-T
* **
81964081 CAGCTCATA-AGAGCTTACTATTTT
1 CAGCTCGTATAGAGCTTAC-CGTTT
* * *
81964105 CAGTTCAT-TGGAGCTTACCGTTT
1 CAGCTCGTATAGAGCTTACCGTTT
* *
81964128 CAACTCGTAT-GAGCTTACTG-TT
1 CAGCTCGTATAGAGCTTACCGTTT
81964150 CAGCTCG-ATAGAGCTTACCGTTT
1 CAGCTCGTATAGAGCTTACCGTTT
*
81964173 CAGCTTGT-TAGAGCTTAC
1 CAGCTCGTATAGAGCTTAC
81964191 TGTATTATAT
Statistics
Matches: 88, Mismatches: 15, Indels: 17
0.73 0.12 0.14
Matches are distributed among these distances:
21 2 0.02
22 17 0.19
23 35 0.40
24 17 0.19
25 1 0.01
26 16 0.18
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (24 bp):
CAGCTCGTATAGAGCTTACCGTTT
Found at i:81969628 original size:41 final size:41
Alignment explanation
Indices: 81969571--81969649 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
81969561 CAAATTTTCT
* **
81969571 TACAATTCACCACAATTGAACAGATGTGAATTGTAGGGTCC
1 TACAATTCAACACAATTGAACAGATACGAATTGTAGGGTCC
*
81969612 TACAATTCAACACAATTGGACAGATACGAATTGTAGGG
1 TACAATTCAACACAATTGAACAGATACGAATTGTAGGG
81969650 AAATTTACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (41 bp):
TACAATTCAACACAATTGAACAGATACGAATTGTAGGGTCC
Found at i:81969918 original size:21 final size:22
Alignment explanation
Indices: 81969892--81969950 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 22
81969882 AGCTTTTGTC
81969892 TTAGGGCAGCTTGTTGA-TGAG
1 TTAGGGCAGCTTGTTGACTGAG
* * *
81969913 TTAGGGCAG-TAGGTAACTGAG
1 TTAGGGCAGCTTGTTGACTGAG
81969934 TTAGGGCAGCTTGTTGA
1 TTAGGGCAGCTTGTTGA
81969951 GTTAGGGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 4 0.13
21 22 0.73
22 4 0.13
ACGTcount: A:0.22, C:0.10, G:0.37, T:0.31
Consensus pattern (22 bp):
TTAGGGCAGCTTGTTGACTGAG
Found at i:81970658 original size:38 final size:38
Alignment explanation
Indices: 81970616--81970692 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
81970606 CACTAAAAAA
81970616 AATGATACACACACCCCTAAAAAAATAGCCCCACCAAC
1 AATGATACACACACCCCTAAAAAAATAGCCCCACCAAC
81970654 AATGATACACACACCCCTAAAAAAATAGCCCCACCAAC
1 AATGATACACACACCCCTAAAAAAATAGCCCCACCAAC
81970692 A
1 A
81970693 TGCATATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.48, C:0.36, G:0.05, T:0.10
Consensus pattern (38 bp):
AATGATACACACACCCCTAAAAAAATAGCCCCACCAAC
Found at i:81970768 original size:40 final size:40
Alignment explanation
Indices: 81970713--81970814 Score: 152
Period size: 40 Copynumber: 2.5 Consensus size: 40
81970703 AAAAAAATAC
*
81970713 TCACTGCTTGCATATTAAAAAATAGGT-AACACACCAACAA
1 TCACTGCATGCATATTAAAAAATA-GTCAACACACCAACAA
*
81970753 TCACTGCATGCATATTAAAAAATATTCAACACACCAACAA
1 TCACTGCATGCATATTAAAAAATAGTCAACACACCAACAA
* *
81970793 TCAGTGCATACATATTAAAAAA
1 TCACTGCATGCATATTAAAAAA
81970815 CATTCACTAA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
39 1 0.02
40 56 0.98
ACGTcount: A:0.47, C:0.22, G:0.08, T:0.24
Consensus pattern (40 bp):
TCACTGCATGCATATTAAAAAATAGTCAACACACCAACAA
Found at i:81972494 original size:15 final size:15
Alignment explanation
Indices: 81972474--81972502 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
81972464 ATGCATCACT
81972474 ATCACTACCAGACAC
1 ATCACTACCAGACAC
81972489 ATCACTACCAGACA
1 ATCACTACCAGACA
81972503 TGTTTTCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.38, G:0.07, T:0.14
Consensus pattern (15 bp):
ATCACTACCAGACAC
Found at i:81972884 original size:64 final size:64
Alignment explanation
Indices: 81972813--81973141 Score: 613
Period size: 64 Copynumber: 5.1 Consensus size: 64
81972803 GAGCTTGGAT
*
81972813 ACAAACAATGACAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCAGAA
1 ACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCAGAA
81972877 ACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCAGAA
1 ACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCAGAA
81972941 ACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCAGAA
1 ACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCAGAA
*
81973005 ACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCAGAT
1 ACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCAGAA
* * *
81973069 ACAAACAATGACAGATATACACAATAAACATCAGTTTGATAATGGCATTCGTACAATGGCAGAT
1 ACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCAGAA
81973133 ACAAACAAT
1 ACAAACAAT
81973142 AAACATCATG
Statistics
Matches: 261, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 261 1.00
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.22
Consensus pattern (64 bp):
ACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATTCATACAATGGCAGAA
Found at i:81973359 original size:6 final size:6
Alignment explanation
Indices: 81973345--81973389 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
81973335 TCAAAATTGT
* * * *
81973345 AATCAA AATCGA AATAGA AATCGA AATCAA AATCAA AATCGA AAT
1 AATCGA AATCGA AATCGA AATCGA AATCGA AATCGA AATCGA AAT
81973390 TAAAATTGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.60, C:0.13, G:0.09, T:0.18
Consensus pattern (6 bp):
AATCGA
Found at i:81973405 original size:18 final size:18
Alignment explanation
Indices: 81973335--81973407 Score: 67
Period size: 18 Copynumber: 4.1 Consensus size: 18
81973325 AGTGAGTGTT
* * *
81973335 TCAAAATTGTAATCAAAA
1 TCAAAATAGAAATCGAAA
*
81973353 TCGAAATAGAAATCGAAA
1 TCAAAATAGAAATCGAAA
81973371 TCAAAATCA-AAATCGAAA
1 TCAAAAT-AGAAATCGAAA
* * *
81973389 TTAAAATTGAAACCGAAA
1 TCAAAATAGAAATCGAAA
81973407 T
1 T
81973408 AACCCTAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
18 44 0.98
19 1 0.02
ACGTcount: A:0.56, C:0.12, G:0.10, T:0.22
Consensus pattern (18 bp):
TCAAAATAGAAATCGAAA
Found at i:81973994 original size:30 final size:32
Alignment explanation
Indices: 81973928--81973996 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
81973918 ATCGTTAATC
* * *
81973928 AGTGACTATTTTGTCACTTTTTTATAACGTTG
1 AGTGACTGTTTTGTAACTTTTTGATAACGTTG
81973960 -GTGACTGTTTTGTAACTTTTTGA-AA-GTTG
1 AGTGACTGTTTTGTAACTTTTTGATAACGTTG
81973989 AGTGACTG
1 AGTGACTG
81973997 AAATGAAACC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 4 0.12
30 9 0.27
31 20 0.61
ACGTcount: A:0.22, C:0.10, G:0.22, T:0.46
Consensus pattern (32 bp):
AGTGACTGTTTTGTAACTTTTTGATAACGTTG
Found at i:81975438 original size:242 final size:243
Alignment explanation
Indices: 81975013--81975501 Score: 917
Period size: 242 Copynumber: 2.0 Consensus size: 243
81975003 ATCACATGAT
81975013 AACTGTGGCAGCTCTAATAGTTTTTAAGGGGCATTGGGTTGATAGCATGTCTTTAATAAGATCTT
1 AACTGTGGCAGCTCTAATAGTTTTTAAGGGGCATTGGGTTGATAGCATGTCTTTAATAAGATCTT
* *
81975078 TCCTCCCTTTCACGGTGCTGCTTTTTCTTAGGGTTAGTCCCACCTTGTTGGCCTTTCTAGGTTGG
66 TCCTCCCTTTCACGGTGCTGCTTTTTCTTAGGGTTAGTCCCACCTTGCTGGCCCTTCTAGGTTGG
81975143 ACTTTTTTAAGAAAAAAAAAATCTGTTAACTGATGCGAAATTTAAAAAACCTAACCAAAACTTGA
131 ACTTTTTTAAGAAAAAAAAAATCTGTTAACTGATGCGAAATTTAAAAAACCTAACCAAAACTTGA
*
81975208 TATAGGAAATTTTGGGTTATGGGTTTTC-AAAAAAATACGCATTGGCC
196 TATAGGAAATTTTGGGTTATGGGTTTTCAAAAAAAATACACATTGGCC
81975255 AACTGTGGCAGCTCTAATAGTTTTTAAGGGGCATTGGGTTGATAGCATGTCTTTAATAAGATCTT
1 AACTGTGGCAGCTCTAATAGTTTTTAAGGGGCATTGGGTTGATAGCATGTCTTTAATAAGATCTT
81975320 TCCTCCCTTTCACGGTGCTGCTTTTTCTTAGGGTTAGTCCCACCTTGCTGGCCCTTCTAGGTTGG
66 TCCTCCCTTTCACGGTGCTGCTTTTTCTTAGGGTTAGTCCCACCTTGCTGGCCCTTCTAGGTTGG
* *
81975385 ACTTTTTTATGAAAAAAAAAATCTGTTAACTGATGCGAAATTTAAAAAACCTAACCAGAACTTGA
131 ACTTTTTTAAGAAAAAAAAAATCTGTTAACTGATGCGAAATTTAAAAAACCTAACCAAAACTTGA
*
81975450 TATAGGAAATTTTGGGTTTTGGGTTTTCAAAAAAAATACACATTGGCC
196 TATAGGAAATTTTGGGTTATGGGTTTTCAAAAAAAATACACATTGGCC
81975498 AACT
1 AACT
81975502 AATGAAGCTA
Statistics
Matches: 240, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
242 218 0.91
243 22 0.09
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (243 bp):
AACTGTGGCAGCTCTAATAGTTTTTAAGGGGCATTGGGTTGATAGCATGTCTTTAATAAGATCTT
TCCTCCCTTTCACGGTGCTGCTTTTTCTTAGGGTTAGTCCCACCTTGCTGGCCCTTCTAGGTTGG
ACTTTTTTAAGAAAAAAAAAATCTGTTAACTGATGCGAAATTTAAAAAACCTAACCAAAACTTGA
TATAGGAAATTTTGGGTTATGGGTTTTCAAAAAAAATACACATTGGCC
Found at i:81983475 original size:30 final size:30
Alignment explanation
Indices: 81983439--81983500 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
81983429 TGATGGTGCA
81983439 TTCCCTACACAGAAAATGAAAAGTGTATCT
1 TTCCCTACACAGAAAATGAAAAGTGTATCT
* *
81983469 TTCCCTACACAGTAAATGAAATGTGTATCT
1 TTCCCTACACAGAAAATGAAAAGTGTATCT
81983499 TT
1 TT
81983501 GGGTGCCACC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (30 bp):
TTCCCTACACAGAAAATGAAAAGTGTATCT
Found at i:81988051 original size:27 final size:26
Alignment explanation
Indices: 81988014--81988128 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
81988004 AGCATGGCTG
* *
81988014 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
81988040 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
81988068 GCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* ** * *
81988095 TCAGATTAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
81988122 CCAGAAC
1 CCAGAAC
81988129 GCTTCTTCCA
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
26 5 0.07
27 54 0.72
28 16 0.21
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:81988073 original size:54 final size:54
Alignment explanation
Indices: 81988014--81988128 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
81988004 AGCATGGCTG
*
81988014 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * * * *
81988068 GCAGAACAGATATATGTGGCAGAGCCATCAGATTAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
81988122 CCAGAAC
1 CCAGAAC
81988129 GCTTCTTCCA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:81989511 original size:222 final size:222
Alignment explanation
Indices: 81989125--81989567 Score: 877
Period size: 222 Copynumber: 2.0 Consensus size: 222
81989115 TAATTTATGA
81989125 AGCTTCTAACTCATCTTCCACAATTTATGGTGATTTTCCAAAGTCACATTACTGCTGCTGTCCCA
1 AGCTTCTAACTCATCTTCCACAATTTATGGTGATTTTCCAAAGTCACATTACTGCTGCTGTCCCA
81989190 AGCAGATTTATTACCAAATCACTCTTTCACACCTAACTTGCATGCTTGTTATTTAAACATGTATA
66 AGCAGATTTATTACCAAATCACTCTTTCACACCTAACTTGCATGCTTGTTATTTAAACATGTATA
81989255 TCACCAATCAATCATCACATATCTATGATTTTACTTAAGTATAATCTCCATTTCATCATTTTAAA
131 TCACCAATCAATCATCACATATCTATGATTTTACTTAAGTATAATCTCCATTTCATCATTTTAAA
81989320 GCACAACATGTTAGCTGATTTTTCCCC
196 GCACAACATGTTAGCTGATTTTTCCCC
*
81989347 AGCTTCTAACTCATCTTCCATAATTTATGGTGATTTTCCAAAGTCACATTACTGCTGCTGTCCCA
1 AGCTTCTAACTCATCTTCCACAATTTATGGTGATTTTCCAAAGTCACATTACTGCTGCTGTCCCA
81989412 AGCAGATTTATTACCAAATCACTCTTTCACACCTAACTTGCATGCTTGTTATTTAAACATGTATA
66 AGCAGATTTATTACCAAATCACTCTTTCACACCTAACTTGCATGCTTGTTATTTAAACATGTATA
81989477 TCACCAATCAATCATCACATATCTATGATTTTACTTAAGTATAATCTCCATTTCATCATTTTAAA
131 TCACCAATCAATCATCACATATCTATGATTTTACTTAAGTATAATCTCCATTTCATCATTTTAAA
81989542 GCACAACATGTTAGCTGATTTTTCCC
196 GCACAACATGTTAGCTGATTTTTCCC
81989568 TTTAACATCT
Statistics
Matches: 220, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
222 220 1.00
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (222 bp):
AGCTTCTAACTCATCTTCCACAATTTATGGTGATTTTCCAAAGTCACATTACTGCTGCTGTCCCA
AGCAGATTTATTACCAAATCACTCTTTCACACCTAACTTGCATGCTTGTTATTTAAACATGTATA
TCACCAATCAATCATCACATATCTATGATTTTACTTAAGTATAATCTCCATTTCATCATTTTAAA
GCACAACATGTTAGCTGATTTTTCCCC
Found at i:81990045 original size:31 final size:26
Alignment explanation
Indices: 81989968--81990077 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
81989958 CATGAAATTC
* *
81989968 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
81989994 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
81990020 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
81990046 TTATCATTGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
81990072 TTATCA
1 TTATCA
81990078 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:81994099 original size:27 final size:26
Alignment explanation
Indices: 81994059--81994173 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
81994049 AGCATGGCTG
* *
81994059 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
81994085 CCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
81994113 CTAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
81994140 TCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
81994167 CCAGAAC
1 CCAGAAC
81994174 GCTTCCTCCA
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
26 5 0.07
27 53 0.72
28 16 0.22
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:81994159 original size:54 final size:54
Alignment explanation
Indices: 81994059--81994173 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
81994049 AGCATGGCTG
*
81994059 CCAGAACAGATAATGTGACAGAGTCACCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
* * * * * * *
81994113 CTAGAACAGATATATGTGGCAGAGCCATCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
81994167 CCAGAAC
1 CCAGAAC
81994174 GCTTCCTCCA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
Found at i:81995829 original size:26 final size:26
Alignment explanation
Indices: 81995790--81995899 Score: 179
Period size: 26 Copynumber: 4.2 Consensus size: 26
81995780 CATGAAATTC
*
81995790 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAGACATTTACCTAACCTA
81995816 TTATCATGAGACATTTACCTAACCTA
1 TTATCATGAGACATTTACCTAACCTA
81995842 TTATCATG-GAACATTTACCTAACCTA
1 TTATCATGAG-ACATTTACCTAACCTA
81995868 TTATCATTGA-ACATTTACCTAACCTA
1 TTATCA-TGAGACATTTACCTAACCTA
81995894 TTATCA
1 TTATCA
81995900 ATTTGTACCA
Statistics
Matches: 80, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
25 1 0.01
26 77 0.96
27 2 0.03
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGAGACATTTACCTAACCTA
Found at i:81996724 original size:26 final size:26
Alignment explanation
Indices: 81996695--81996745 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
81996685 TGGATATGTT
*
81996695 GGGTCCATAACCTTAGCCAAACACAC
1 GGGTCAATAACCTTAGCCAAACACAC
81996721 GGGTCAATAACCTTAGCCAAACACA
1 GGGTCAATAACCTTAGCCAAACACA
81996746 ATCTCGACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.31, G:0.16, T:0.16
Consensus pattern (26 bp):
GGGTCAATAACCTTAGCCAAACACAC
Found at i:82000251 original size:17 final size:16
Alignment explanation
Indices: 82000211--82000252 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
82000201 TTGGATGAGA
82000211 GTTAGTGGG-TTTGTT
1 GTTAGTGGGATTTGTT
*
82000226 -TTGGTGGGATTTGTT
1 GTTAGTGGGATTTGTT
82000241 GGTTAGTGGGAT
1 -GTTAGTGGGAT
82000253 AGTAGGGAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 7 0.32
15 6 0.27
17 9 0.41
ACGTcount: A:0.10, C:0.00, G:0.43, T:0.48
Consensus pattern (16 bp):
GTTAGTGGGATTTGTT
Found at i:82001330 original size:51 final size:53
Alignment explanation
Indices: 82001254--82001359 Score: 162
Period size: 51 Copynumber: 2.0 Consensus size: 53
82001244 ATATGTTGGG
*
82001254 TGTGCTTGAGGTCTTGGGTTCAAGTCCTA-TTGA-AAATTCTGCTATTTTTTA
1 TGTGCTTGAGGTCTTGGGTTCAAGTCCCACTTGAGAAATTCTGCTATTTTTTA
* *
82001305 TGTGCTTGAGGTCTTGGGTTCAAGTCCCACTTTTAGAAATTTTGCTATTTTTTA
1 TGTGCTTGAGGTCTTGGGTTCAAGTCCCAC-TTGAGAAATTCTGCTATTTTTTA
82001359 T
1 T
82001360 CCTAGTCTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
51 28 0.57
53 3 0.06
54 18 0.37
ACGTcount: A:0.19, C:0.14, G:0.21, T:0.46
Consensus pattern (53 bp):
TGTGCTTGAGGTCTTGGGTTCAAGTCCCACTTGAGAAATTCTGCTATTTTTTA
Found at i:82001668 original size:15 final size:16
Alignment explanation
Indices: 82001650--82001685 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
82001640 TTTGATTTAG
*
82001650 TTTTTTATTTTTATT-
1 TTTTTAATTTTTATTC
82001665 TTTTTAATTTTTATTC
1 TTTTTAATTTTTATTC
82001681 TTTTT
1 TTTTT
82001686 CCAAAAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTAATTTTTATTC
Found at i:82008674 original size:6 final size:5
Alignment explanation
Indices: 82008653--82008686 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
82008643 CCAATTTGTG
*
82008653 AAAAT AAAAT AAAAT AAAAAT AAAAG AAAAT AAA
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAA
82008687 GAAAACACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:82008674 original size:16 final size:16
Alignment explanation
Indices: 82008653--82008686 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
82008643 CCAATTTGTG
*
82008653 AAAATAAAATAAAATA
1 AAAATAAAAGAAAATA
82008669 AAAATAAAAGAAAATA
1 AAAATAAAAGAAAATA
82008685 AA
1 AA
82008687 GAAAACACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (16 bp):
AAAATAAAAGAAAATA
Found at i:82009182 original size:23 final size:23
Alignment explanation
Indices: 82009156--82009203 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
82009146 CATTCTTTCG
82009156 ATAAATAAATTTTTTCCTATACT
1 ATAAATAAATTTTTTCCTATACT
*
82009179 ATAATTAAATTTTTTCCTATACT
1 ATAAATAAATTTTTTCCTATACT
82009202 AT
1 AT
82009204 TTGAGGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (23 bp):
ATAAATAAATTTTTTCCTATACT
Found at i:82011117 original size:105 final size:105
Alignment explanation
Indices: 82010931--82011170 Score: 327
Period size: 105 Copynumber: 2.3 Consensus size: 105
82010921 CCACACGACC
* * * * * *
82010931 AGGCACACGAGCATGTATCTAGGCCGTGTAAACCACACGCCCGTGTGCTAGGCTGTGTAGTTGGT
1 AGGCACACGGGCCTGTGTCCAGGCCGTGTAAACCACACGCCCGTCTGCTAGGCTGTGTAGTTGGC
*
82010996 CGTGTAACTCATTGTTCATCAATTTAGGGCCACACGAGGA
66 CGTGTAACTCACTGTTCATCAATTTAGGGCCACACGAGGA
* * * * * *
82011036 AGGCACATGGGCCTGTGTCCAGGCCGTGTGAGCCATATGCCCGTCTGCTAGGCTGTGTGGTTGGC
1 AGGCACACGGGCCTGTGTCCAGGCCGTGTAAACCACACGCCCGTCTGCTAGGCTGTGTAGTTGGC
* *
82011101 CGTGTAACTTACTGTTCATCAATTTGGGGCCACACGAGGA
66 CGTGTAACTCACTGTTCATCAATTTAGGGCCACACGAGGA
* *
82011141 AGGCACACGGGCGTGTGTCCAGGCCATGTA
1 AGGCACACGGGCCTGTGTCCAGGCCGTGTA
82011171 TGGCCATACT
Statistics
Matches: 116, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
105 116 1.00
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (105 bp):
AGGCACACGGGCCTGTGTCCAGGCCGTGTAAACCACACGCCCGTCTGCTAGGCTGTGTAGTTGGC
CGTGTAACTCACTGTTCATCAATTTAGGGCCACACGAGGA
Found at i:82011430 original size:49 final size:50
Alignment explanation
Indices: 82011373--82011491 Score: 170
Period size: 50 Copynumber: 2.4 Consensus size: 50
82011363 ACGGGCAAGG
* *
82011373 ACATGGGCATGTATCCAGGCCATGTAAC-TCACT-TTTATGTTTTGGAACC
1 ACATGGGCATGTGTCCAGGCCATGTAACTTC-CTGATTATGTTTTGGAACC
* *
82011422 ACATGGGCATGTGTCTAGGCCATGTAACTTCCTGATTATGTTTTGGAATC
1 ACATGGGCATGTGTCCAGGCCATGTAACTTCCTGATTATGTTTTGGAACC
*
82011472 ACACGGGCATGTGTCCAGGC
1 ACATGGGCATGTGTCCAGGC
82011492 TGTGTGGCAT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
49 28 0.45
50 34 0.55
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (50 bp):
ACATGGGCATGTGTCCAGGCCATGTAACTTCCTGATTATGTTTTGGAACC
Found at i:82014160 original size:18 final size:18
Alignment explanation
Indices: 82014139--82014179 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
82014129 TTTCACAATC
*
82014139 AATTTTCATTTTATACAA
1 AATTTTCAGTTTATACAA
* *
82014157 AATTTTTAGTTTATATAA
1 AATTTTCAGTTTATACAA
82014175 AATTT
1 AATTT
82014180 AGTCCTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (18 bp):
AATTTTCAGTTTATACAA
Found at i:82014547 original size:19 final size:19
Alignment explanation
Indices: 82014523--82014561 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
82014513 AGAAAATAAC
82014523 TAAGGACTTGTAATTTGAG
1 TAAGGACTTGTAATTTGAG
82014542 TAAGGACTTGTAATTTGAG
1 TAAGGACTTGTAATTTGAG
82014561 T
1 T
82014562 TAAAAGCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.26, T:0.38
Consensus pattern (19 bp):
TAAGGACTTGTAATTTGAG
Found at i:82016859 original size:23 final size:23
Alignment explanation
Indices: 82016759--82016907 Score: 81
Period size: 23 Copynumber: 6.3 Consensus size: 23
82016749 AGCTCCTCCT
*
82016759 GAGCTGATGAACAGTAAGCTC-TATT
1 GAGCTGA--AACAGTAAGCTCATA-C
* * *
82016784 GAGCTAAAAC-GATAAGCTCTTTC
1 GAGCTGAAACAG-TAAGCTCATAC
*
82016807 TAGCTG-AACAGTAAGCTCATAC
1 GAGCTGAAACAGTAAGCTCATAC
* * *
82016829 GAGTTGAAACGGTAAGCTCCA-AT
1 GAGCTGAAACAGTAAGCT-CATAC
* * * *
82016852 GAGCTGAAAATAGTAACCTCTTTC
1 GAGCTG-AAACAGTAAGCTCATAC
82016876 GAGCTGATAAATCAGTAAGCTCATAC
1 GAGCTG--AAA-CAGTAAGCTCATAC
82016902 GAGCTG
1 GAGCTG
82016908 TGGTGAGTTC
Statistics
Matches: 92, Mismatches: 23, Indels: 17
0.70 0.17 0.13
Matches are distributed among these distances:
22 17 0.18
23 32 0.35
24 18 0.20
25 9 0.10
26 16 0.17
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCATAC
Found at i:82016879 original size:24 final size:26
Alignment explanation
Indices: 82016852--82016907 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
82016842 AAGCTCCAAT
* *
82016852 GAGCTGA-AAAT-AGTAACCTCTTTC
1 GAGCTGATAAATCAGTAACCTCATAC
*
82016876 GAGCTGATAAATCAGTAAGCTCATAC
1 GAGCTGATAAATCAGTAACCTCATAC
82016902 GAGCTG
1 GAGCTG
82016908 TGGTGAGTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 7 0.26
25 4 0.15
26 16 0.59
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (26 bp):
GAGCTGATAAATCAGTAACCTCATAC
Found at i:82016904 original size:26 final size:25
Alignment explanation
Indices: 82016815--82016907 Score: 86
Period size: 24 Copynumber: 3.8 Consensus size: 25
82016805 TCTAGCTGAA
*
82016815 CAGTAAGCTCATACGAGTTG-AAA-
1 CAGTAAGCTCATACGAGCTGAAAAT
* *
82016838 CGGTAAGCTCCA-ATGAGCTGAAAAT
1 CAGTAAGCT-CATACGAGCTGAAAAT
* * *
82016863 -AGTAACCTCTTTCGAGCTGATAAAT
1 CAGTAAGCTCATACGAGCTGA-AAAT
82016888 CAGTAAGCTCATACGAGCTG
1 CAGTAAGCTCATACGAGCTG
82016908 TGGTGAGTTC
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
23 15 0.28
24 18 0.34
25 4 0.08
26 16 0.30
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (25 bp):
CAGTAAGCTCATACGAGCTGAAAAT
Found at i:82019900 original size:34 final size:34
Alignment explanation
Indices: 82019862--82019926 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
82019852 TGCTATTGAG
*
82019862 TTGAACTGTTTTAAGCATATTAATTGCTACTGTA
1 TTGAACTGTTATAAGCATATTAATTGCTACTGTA
*
82019896 TTGAACTGTTATAAGCATATTGATTGCTACT
1 TTGAACTGTTATAAGCATATTAATTGCTACT
82019927 ATGTTGTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.43
Consensus pattern (34 bp):
TTGAACTGTTATAAGCATATTAATTGCTACTGTA
Found at i:82020103 original size:45 final size:45
Alignment explanation
Indices: 82020039--82020126 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
82020029 AAGCAGCTTC
**
82020039 TCTACACCATTTAGTGGTTTATTCACACCGTATTAGCAACTTTTA
1 TCTACACCATTTAGTGGTTTACCCACACCGTATTAGCAACTTTTA
* *
82020084 TCTACACCGA-TTAGTGGTTTACCCATATCGTATTAGCAACTTT
1 TCTACACC-ATTTAGTGGTTTACCCACACCGTATTAGCAACTTT
82020127 AATTTGCAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 37 0.97
46 1 0.03
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (45 bp):
TCTACACCATTTAGTGGTTTACCCACACCGTATTAGCAACTTTTA
Found at i:82029371 original size:19 final size:19
Alignment explanation
Indices: 82029342--82029385 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
82029332 GTAGAATAAA
82029342 AAAACTTCACAAATTAATTT
1 AAAA-TTCACAAATTAATTT
*
82029362 AAAATTCACATATTAATTT
1 AAAATTCACAAATTAATTT
82029381 AAAAT
1 AAAAT
82029386 GCTGCCATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATTCACAAATTAATTT
Found at i:82030509 original size:5 final size:5
Alignment explanation
Indices: 82030488--82030526 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
82030478 TCGAGTTGAT
* * *
82030488 TCGAA CCGAA CCGAA TCAAA TCGAA TCGAA TCGAA TCGA
1 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA TCGA
82030527 GTGAAATTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.41, C:0.26, G:0.18, T:0.15
Consensus pattern (5 bp):
TCGAA
Found at i:82032041 original size:31 final size:31
Alignment explanation
Indices: 82032006--82032068 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
82031996 TTCTGCCAAG
82032006 TTAGTTAAAAGCGCGCTTACATGATTTCTTC
1 TTAGTTAAAAGCGCGCTTACATGATTTCTTC
82032037 TTAGTTAAAAGCGCGCTTACATGATTTCTTC
1 TTAGTTAAAAGCGCGCTTACATGATTTCTTC
82032068 T
1 T
82032069 AACTAGGCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (31 bp):
TTAGTTAAAAGCGCGCTTACATGATTTCTTC
Found at i:82032179 original size:16 final size:15
Alignment explanation
Indices: 82032134--82032198 Score: 64
Period size: 16 Copynumber: 4.3 Consensus size: 15
82032124 CTGGTTGGTT
82032134 TTTTTAGGG-TTAAG
1 TTTTTAGGGTTTAAG
*
82032148 -GTTT-GGGTTTAGAG
1 TTTTTAGGGTTTA-AG
*
82032162 TTTTTAAGGTTTTAAG
1 TTTTT-AGGGTTTAAG
82032178 TTTTTAGGGTTTAAGG
1 TTTTTAGGGTTTAA-G
82032194 TTTTT
1 TTTTT
82032199 CTTCTAGGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
12 3 0.07
13 6 0.15
14 2 0.05
15 11 0.27
16 13 0.32
17 6 0.15
ACGTcount: A:0.18, C:0.00, G:0.28, T:0.54
Consensus pattern (15 bp):
TTTTTAGGGTTTAAG
Found at i:82043259 original size:159 final size:159
Alignment explanation
Indices: 82042964--82043286 Score: 619
Period size: 159 Copynumber: 2.0 Consensus size: 159
82042954 CACACCATGC
*
82042964 TGTAACGAAATGCGGCACATAATCGGAATATTGCAATTGAGCTACCAGATAACAAGCTTAAGAGC
1 TGTAGCGAAATGCGGCACATAATCGGAATATTGCAATTGAGCTACCAGATAACAAGCTTAAGAGC
*
82043029 CTTTCGGACACTTCCTCCAAGTAACATCAACCTACCCCCATGCAATGCAACATACCATAAATGAG
66 CTTTCGGACACTTCCTCCAAGTAACATCAACCTACCCCCATGCAATGCAACATACCATAAATGAA
82043094 AGGCAAATATGATAATAATAGAACATACA
131 AGGCAAATATGATAATAATAGAACATACA
82043123 TGTAGCGAAATGCGGCACATAATCGGAATATTGCAATTGAGCTACCAGATAACAAGCTTAAGAGC
1 TGTAGCGAAATGCGGCACATAATCGGAATATTGCAATTGAGCTACCAGATAACAAGCTTAAGAGC
82043188 CTTTCGGACACTTCCTCCAAGTAACATCAACCTACCCCCATGCAATGCAACATACCATAAATGAA
66 CTTTCGGACACTTCCTCCAAGTAACATCAACCTACCCCCATGCAATGCAACATACCATAAATGAA
*
82043253 ATGCAAATATGATAATAATAGAACATACA
131 AGGCAAATATGATAATAATAGAACATACA
82043282 TGTAG
1 TGTAG
82043287 TTCAGTATAG
Statistics
Matches: 161, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
159 161 1.00
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.22
Consensus pattern (159 bp):
TGTAGCGAAATGCGGCACATAATCGGAATATTGCAATTGAGCTACCAGATAACAAGCTTAAGAGC
CTTTCGGACACTTCCTCCAAGTAACATCAACCTACCCCCATGCAATGCAACATACCATAAATGAA
AGGCAAATATGATAATAATAGAACATACA
Found at i:82050722 original size:13 final size:13
Alignment explanation
Indices: 82050704--82050729 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82050694 AGACTTAGGG
82050704 CTTTTGAAAAGTT
1 CTTTTGAAAAGTT
82050717 CTTTTGAAAAGTT
1 CTTTTGAAAAGTT
82050730 TGGTTTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
CTTTTGAAAAGTT
Found at i:82053592 original size:25 final size:25
Alignment explanation
Indices: 82053541--82053597 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
82053531 TTAATTTAAT
* **
82053541 ATTTAATAAATTTATATATTTTTGC
1 ATTTAATAAATTTATATATATAGGC
82053566 ATTTAATAAAATTT-TATATATAGGC
1 ATTTAAT-AAATTTATATATATAGGC
82053591 ATCTTAA
1 AT-TTAA
82053598 CACTTTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 17 0.63
26 10 0.37
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.49
Consensus pattern (25 bp):
ATTTAATAAATTTATATATATAGGC
Found at i:82055474 original size:41 final size:41
Alignment explanation
Indices: 82055352--82055480 Score: 131
Period size: 40 Copynumber: 3.2 Consensus size: 41
82055342 CGACGACTAA
* * * *
82055352 TAGTGTACGTATC-GAGATAGCTTTGGCTATATAAAGCACT
1 TAGTGTGCGAATCGGAGATAGCTTCGGCTATATAAGGCACT
* *
82055392 TAGTGTGCGAATCGGA-ATAGCTTCGGCTATATATGGTACT
1 TAGTGTGCGAATCGGAGATAGCTTCGGCTATATAAGGCACT
* * *
82055432 TAGTGTGCGAGA-CTGAGAGAGCTTGGGCTATGA-AAGGCACT
1 TAGTGTGCGA-ATCGGAGATAGCTTCGGCTAT-ATAAGGCACT
82055473 TAGTGTGC
1 TAGTGTGC
82055481 AAGATTATAA
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
40 44 0.59
41 29 0.39
42 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (41 bp):
TAGTGTGCGAATCGGAGATAGCTTCGGCTATATAAGGCACT
Found at i:82062478 original size:148 final size:148
Alignment explanation
Indices: 82062210--82062504 Score: 572
Period size: 148 Copynumber: 2.0 Consensus size: 148
82062200 TAATATAAAC
*
82062210 TTAGTGGAGAAAATCCTTACTTGGCCGGCCACTTTGTGTAAACTTGGCATTTTGACATGCAAGCC
1 TTAGTGGAGAAAATCCTTACTTGGCCGGCCACTTTGTATAAACTTGGCATTTTGACATGCAAGCC
82062275 CAAACCTCCCTATTTTAATACTATTTGATCCTTACATATTCACCTATCATATTTTCTTAAGTTCT
66 CAAACCTCCCTATTTTAATACTATTTGATCCTTACATATTCACCTATCATATTTTCTTAAGTTCT
82062340 CAACTAAGTCAATCAAAA
131 CAACTAAGTCAATCAAAA
82062358 TTAGTGGAGAAAATCCTTACTTGGCCGGCCACTTTGTATAAACTTGGCATTTTGACATGCAAGCC
1 TTAGTGGAGAAAATCCTTACTTGGCCGGCCACTTTGTATAAACTTGGCATTTTGACATGCAAGCC
*
82062423 CAAACCTCCCTATTTTAATACTATTTGGTCCTTACATATTCACCTATCATATTTTCTTAAGTTCT
66 CAAACCTCCCTATTTTAATACTATTTGATCCTTACATATTCACCTATCATATTTTCTTAAGTTCT
82062488 CAACTAAGTCAATCAAA
131 CAACTAAGTCAATCAAA
82062505 TGAAATTCAC
Statistics
Matches: 145, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 145 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.35
Consensus pattern (148 bp):
TTAGTGGAGAAAATCCTTACTTGGCCGGCCACTTTGTATAAACTTGGCATTTTGACATGCAAGCC
CAAACCTCCCTATTTTAATACTATTTGATCCTTACATATTCACCTATCATATTTTCTTAAGTTCT
CAACTAAGTCAATCAAAA
Found at i:82067595 original size:40 final size:40
Alignment explanation
Indices: 82067529--82067661 Score: 173
Period size: 40 Copynumber: 3.3 Consensus size: 40
82067519 AATTATGTTT
* *
82067529 GGCACTTAGTGTGCGTATCGAGATAGCTTTGGCTATATAA
1 GGCACTTAGTGTGCGAATCGAGATAGCTTCGGCTATATAA
* *
82067569 AGCACTTAGTGTGCGAATCG-GAATAGCTTCGGCTATATAT
1 GGCACTTAGTGTGCGAATCGAG-ATAGCTTCGGCTATATAA
82067609 GGCACTTAGTGTGCGAGA-CTGAGATAGCTTCGGCTATGA-AA
1 GGCACTTAGTGTGCGA-ATC-GAGATAGCTTCGGCTAT-ATAA
82067650 GGCACTTAGTGT
1 GGCACTTAGTGT
82067662 ACAAGATTAT
Statistics
Matches: 82, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
39 1 0.01
40 50 0.61
41 29 0.35
42 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (40 bp):
GGCACTTAGTGTGCGAATCGAGATAGCTTCGGCTATATAA
Found at i:82067638 original size:81 final size:83
Alignment explanation
Indices: 82067528--82067710 Score: 214
Period size: 81 Copynumber: 2.2 Consensus size: 83
82067518 CAATTATGTT
* * * * *
82067528 TGGCACTTAGTGTGCG-TATCGAGATAGCTTTGGCTAT-ATAAAGCACTTAGTGTGCGA-ATCGG
1 TGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGCTATGA-AAAGCACTTAGTGTACAAGATCAG
*
82067590 AATAGCTTCGGCTAT-ATA
65 AATAGCTTCAGCTATGATA
* * *
82067608 TGGCACTTAGTGTGCGAGA-CTGAGATAGCTTCGGCTATGAAAGGCACTTAGTGTACAAGATTAT
1 TGGCACTTAGTGTGCGAGATC-GAGATAGCTTCGGCTATGAAAAGCACTTAGTGTACAAGATCAG
* *
82067672 AATAGCTTCAGCTATGCTT
65 AATAGCTTCAGCTATGATA
82067691 TGGCACTTAGTGTGCGAGAT
1 TGGCACTTAGTGTGCGAGAT
82067711 ATCGAGTATT
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
80 17 0.20
81 32 0.37
82 17 0.20
83 20 0.23
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (83 bp):
TGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGCTATGAAAAGCACTTAGTGTACAAGATCAGA
ATAGCTTCAGCTATGATA
Found at i:82067677 original size:41 final size:42
Alignment explanation
Indices: 82067551--82067703 Score: 120
Period size: 41 Copynumber: 3.7 Consensus size: 42
82067541 GCGTATCGAG
* * * * *
82067551 ATAGCTTTGGCTAT-ATAAAGCACTTAGTGTGC--GAATCGGA
1 ATAGCTTCGGCTATGATAAGGCACTTAGTGTACAAGACT-GAA
* * * *
82067591 ATAGCTTCGGCTAT-ATATGGCACTTAGTGTGCGAGACTGAG
1 ATAGCTTCGGCTATGATAAGGCACTTAGTGTACAAGACTGAA
*
82067632 ATAGCTTCGGCTATGA-AAGGCACTTAGTGTACAAGA-TTATA
1 ATAGCTTCGGCTATGATAAGGCACTTAGTGTACAAGACTGA-A
* * **
82067673 ATAGCTTCAGCTATGCTTTGGCACTTAGTGT
1 ATAGCTTCGGCTATGATAAGGCACTTAGTGT
82067704 GCGAGATATC
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
40 31 0.33
41 46 0.49
42 16 0.17
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
ATAGCTTCGGCTATGATAAGGCACTTAGTGTACAAGACTGAA
Found at i:82070721 original size:43 final size:43
Alignment explanation
Indices: 82070656--82070822 Score: 194
Period size: 43 Copynumber: 3.9 Consensus size: 43
82070646 AGCTGGTACA
* * * *
82070656 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * *
82070698 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCATATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
82070741 ATGCCAATGTCCTAGACATGGTCTTACACATAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
*
82070784 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
82070823 CTCGGTAATC
Statistics
Matches: 102, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 6 0.06
43 96 0.94
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:82071275 original size:39 final size:40
Alignment explanation
Indices: 82071232--82071311 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
82071222 TAAATTACAC
*
82071232 AATTTC-TTTCTAATTTCATGCTAGCCAAATTTTTCATAG
1 AATTTCTTTTCTAATTTCATGCTAGCCAAATTCTTCATAG
*
82071271 AATTTCTTTTTTAATTTCATGCTAGCCAAATTCTTCATAG
1 AATTTCTTTTCTAATTTCATGCTAGCCAAATTCTTCATAG
82071311 A
1 A
82071312 CTCCTACTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 6 0.16
40 32 0.84
ACGTcount: A:0.29, C:0.17, G:0.07, T:0.46
Consensus pattern (40 bp):
AATTTCTTTTCTAATTTCATGCTAGCCAAATTCTTCATAG
Found at i:82073250 original size:25 final size:25
Alignment explanation
Indices: 82073204--82073251 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
82073194 ATATAATCAT
* *
82073204 TTTCTTTCCTTAATTTTTTTTTCTA
1 TTTCTTTCCTTAACTTTATTTTCTA
* *
82073229 TTTCTTTTCTTTACTTTATTTTC
1 TTTCTTTCCTTAACTTTATTTTC
82073252 CTTTACAAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.73
Consensus pattern (25 bp):
TTTCTTTCCTTAACTTTATTTTCTA
Found at i:82074653 original size:21 final size:22
Alignment explanation
Indices: 82074615--82074657 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
82074605 AAGCTTGCAG
*
82074615 GTCGGGCATGGCTAAATGGCTA
1 GTCGGGCATGGATAAATGGCTA
82074637 GTCGGGCAT-GATAAATGGCTA
1 GTCGGGCATGGATAAATGGCTA
82074658 AGAAATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.26, C:0.16, G:0.35, T:0.23
Consensus pattern (22 bp):
GTCGGGCATGGATAAATGGCTA
Found at i:82079608 original size:101 final size:100
Alignment explanation
Indices: 82079419--82079661 Score: 263
Period size: 101 Copynumber: 2.4 Consensus size: 100
82079409 TTGTAAGAAA
* * * * * *
82079419 ACATGTTTAGTACTATGTGCAAGCTACTATGTGTTTAAGATGGTTTTAGGCCACATGTGTTGTAC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGG-TTTAGGCCACATGTGTAGTAC
* *
82079484 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATC
65 TAAGTGAAGGCTACTACGCGTACCCGA-AACTT-AATC
* * *
82079522 ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGG-TTAGGTCACGTGTGTAGTACT
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTTAGGCCACATGTGTAGTACT
* * *** **
82079586 AAGTGAAGGCTACTACGTGTACCGGATTGTTGGTC
66 AAGTGAAGGCTACTACGCGTACCCGAAACTTAATC
* * *
82079621 ACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGAT
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT
82079662 AGCTTCGGTT
Statistics
Matches: 118, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
99 39 0.33
100 2 0.02
101 40 0.34
103 37 0.31
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (100 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTTAGGCCACATGTGTAGTACT
AAGTGAAGGCTACTACGCGTACCCGAAACTTAATC
Found at i:82079645 original size:49 final size:50
Alignment explanation
Indices: 82079520--82079661 Score: 196
Period size: 50 Copynumber: 2.9 Consensus size: 50
82079510 ACAACTTCAA
* * *
82079520 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATGGTTAGG
* *
82079570 TCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCGGATTGTT-GG
1 TCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATGGTTAGG
* * * *
82079619 TCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGAT
1 TCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGAT
82079662 AGCTTCGGTT
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 40 0.49
50 42 0.51
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATGGTTAGG
Found at i:82086671 original size:80 final size:80
Alignment explanation
Indices: 82086538--82086697 Score: 302
Period size: 80 Copynumber: 2.0 Consensus size: 80
82086528 TTGTTGAAAG
82086538 ACTATGACTGCACAATTGAGTATCACCCTGGAAAAGCTAATATAGTGGTTGATGCCTTAAGTAGA
1 ACTATGACTGCACAATTGAGTATCACCCTGGAAAAGCTAATATAGTGGTTGATGCCTTAAGTAGA
82086603 AAGGCAATGTCCGAC
66 AAGGCAATGTCCGAC
* *
82086618 ACTATGACTGTACAATTGAGTATCACCTTGGAAAAGCTAATATAGTGGTTGATGCCTTAAGTAGA
1 ACTATGACTGCACAATTGAGTATCACCCTGGAAAAGCTAATATAGTGGTTGATGCCTTAAGTAGA
82086683 AAGGCAATGTCCGAC
66 AAGGCAATGTCCGAC
82086698 TTGAGAGCTA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (80 bp):
ACTATGACTGCACAATTGAGTATCACCCTGGAAAAGCTAATATAGTGGTTGATGCCTTAAGTAGA
AAGGCAATGTCCGAC
Found at i:82091884 original size:18 final size:18
Alignment explanation
Indices: 82091848--82091885 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
82091838 CTTCTCTTTT
*
82091848 CTTTGCTAAGCTCATCGA
1 CTTTGCTAAGCTCACCGA
82091866 CTTTGC-AAGCTCTACCGA
1 CTTTGCTAAGCTC-ACCGA
82091884 CT
1 CT
82091886 AACACAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.32
Consensus pattern (18 bp):
CTTTGCTAAGCTCACCGA
Found at i:82094641 original size:49 final size:49
Alignment explanation
Indices: 82094581--82094794 Score: 158
Period size: 49 Copynumber: 4.5 Consensus size: 49
82094571 ATCAAAGTCA
* *
82094581 ATGCCACGTCCCAGACAGGTCTTACACTGACTTTCAGATATCGAGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCG
* * * * * **
82094630 ATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATCTATTG-GTGTAG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-GCCG
* * * * * *
82094679 ATGCCATGTCCTAGGCAGGTCTTACACTGAC--ACACA-A-C-AAGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCG
* *
82094723 ATGCCATGTCCTAGACAGGTCTTACACT-AGCTTGT-ATATCTCGAGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATCGAGGCCG
* * *
82094772 AT-ACATGTCCCAAACATGTCTTA
1 ATGCCATGTCCCAGACAGGTCTTA
82094795 TACTAGCTCT
Statistics
Matches: 126, Mismatches: 30, Indels: 19
0.72 0.17 0.11
Matches are distributed among these distances:
43 1 0.01
44 30 0.24
46 3 0.02
47 2 0.02
48 19 0.15
49 71 0.56
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCG
Found at i:82094872 original size:46 final size:46
Alignment explanation
Indices: 82094722--82094893 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 46
82094712 ACAACAAGCT
* * *
82094722 GATGCCATGTCCTAGACAGGTCTTACACTAGCT-T-GTATATCTCGAGGCC
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTA-A--T-GTGGCC
* * *
82094771 GATACATGTCCCAAACATGTCTTATACTAGCTCTCGTCTCAATGT---C
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCG--T-AATGTGGCC
*
82094817 GCTGCATGTCCCAGACATGTCTTACACTAGCTCTCGTAATGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTAATGTGGCC
*
82094863 GATGTATGTCCCA-ACCATGTCTTACACTAGC
1 GATGCATGTCCCAGA-CATGTCTTACACTAGC
82094894 ACACATATCA
Statistics
Matches: 102, Mismatches: 12, Indels: 21
0.76 0.09 0.16
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 1 0.01
46 61 0.60
48 24 0.24
49 5 0.05
50 2 0.02
52 2 0.02
53 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTAATGTGGCC
Found at i:82096865 original size:43 final size:43
Alignment explanation
Indices: 82096804--82096910 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
82096794 GGGGACACAA
* * *
82096804 GCCCGTGTGGCCAGGCCGTGTGTCTCACATGGCCAAGAGACAT
1 GCCCGTATGGCCAGGCCGTGTGTCTCACAAGGCCAAGAGACAC
*
82096847 GCCCGTATGGCTAGGCCGTGTGTCTCACAAGGCCAAGAGACAC
1 GCCCGTATGGCCAGGCCGTGTGTCTCACAAGGCCAAGAGACAC
*
82096890 GCCC--ATGTCACAGGCCGTGTG
1 GCCCGTATGGC-CAGGCCGTGTG
82096911 GACATTCGAA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
41 4 0.07
42 10 0.18
43 43 0.75
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.18
Consensus pattern (43 bp):
GCCCGTATGGCCAGGCCGTGTGTCTCACAAGGCCAAGAGACAC
Found at i:82097781 original size:32 final size:32
Alignment explanation
Indices: 82097745--82097839 Score: 154
Period size: 32 Copynumber: 2.9 Consensus size: 32
82097735 TGTATGCATT
82097745 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
82097777 TTAGCATTTTAATAGTTAATGGATGATGGACA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
* *
82097809 TTAGCTTTTTTAATAGTTAGTGGATGATGGG
1 TTAGC-ATTTTAATAGTTAATGGATGATGGG
82097840 TACTTCATGT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 36 0.62
33 22 0.38
ACGTcount: A:0.29, C:0.05, G:0.25, T:0.40
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:82101712 original size:29 final size:30
Alignment explanation
Indices: 82101648--82101714 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 30
82101638 CATAGCAGCC
* *
82101648 CATAATTTTTATTATTTCACACTTTTACCA
1 CATAATTTTTATTATTTCACAATTTAACCA
* *
82101678 CATAATTTTTATT-TTTCTCAATTTAACCC
1 CATAATTTTTATTATTTCACAATTTAACCA
*
82101707 CCTAATTT
1 CATAATTT
82101715 GAAATTTCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 19 0.59
30 13 0.41
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.51
Consensus pattern (30 bp):
CATAATTTTTATTATTTCACAATTTAACCA
Found at i:82104326 original size:55 final size:53
Alignment explanation
Indices: 82104238--82104488 Score: 223
Period size: 53 Copynumber: 4.8 Consensus size: 53
82104228 CATTAGGGTT
* *
82104238 CAAGGATACCATGTAAGACCACGCCAAGGCATGGCAGTTGGTAAGGTCTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCA-TTGGTAA-GTCTCTAAGG
* * * * *
82104293 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATT-GTTA--CTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTCTCTAAGG
* * * *
82104343 TAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGT-TCATAAGG
1 -CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTCTC-TAAGG
* * * *
82104396 CAAGGATACCATATAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTCTCTAAGG
* * ** *
82104446 -AAGGATACCACGTAAGACCATGACAATTCATGGCAATGGTAAG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
82104489 ATACCCGCGT
Statistics
Matches: 162, Mismatches: 27, Indels: 20
0.78 0.13 0.10
Matches are distributed among these distances:
49 38 0.23
50 34 0.21
51 7 0.04
52 7 0.04
53 41 0.25
54 4 0.02
55 31 0.19
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTCTCTAAGG
Found at i:82104701 original size:16 final size:16
Alignment explanation
Indices: 82104680--82104710 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82104670 ATAAATTTGA
82104680 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
82104696 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
82104711 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:82111912 original size:55 final size:54
Alignment explanation
Indices: 82111824--82112081 Score: 253
Period size: 55 Copynumber: 4.9 Consensus size: 54
82111814 CATTAGGGTT
* *
82111824 CAAGGATACCATGTAAGACCATGCCAAGGCATGGCAGGTGGTAAGGTCTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCA-TTGGTAAGGTCTCTAAGG
* * * * * *
82111879 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGT-CTCTAAGG
* * *
82111934 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGA-GT-TCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTC-TAAGG
* * *
82111987 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAA-GTTTC-AA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTCTAAGG
* * * * *
82112037 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGATAAGGT
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGT
82112082 ACCCGCGTAT
Statistics
Matches: 171, Mismatches: 26, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
49 38 0.22
50 2 0.01
52 7 0.04
53 40 0.23
54 10 0.06
55 70 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.21
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTCTAAGG
Found at i:82112031 original size:108 final size:110
Alignment explanation
Indices: 82111832--82112032 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
82111822 TTCAAGGATA
*
82111832 CCATGTAAGACCATGCCAAGGCATGGCAGGTGGTAAGGTCTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAGGTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGA
*
82111897 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
82111942 CCATGTAAGACCATGCCAAGGCATGGCA-TTGGTGA-GT-TCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAGGTGGTAAGGTCTC-TAAGGCAAGGAAACCATGTAAG
*
82112004 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
82112033 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 2 0.02
108 49 0.58
109 5 0.06
110 28 0.33
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.21
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAGGTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:82112292 original size:16 final size:16
Alignment explanation
Indices: 82112271--82112301 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82112261 ATAAATTTGA
82112271 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
82112287 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
82112302 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:82116961 original size:22 final size:23
Alignment explanation
Indices: 82116936--82116995 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
82116926 TGGACTGAAT
82116936 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
82116958 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
82116980 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
82116996 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:82116963 original size:4 final size:4
Alignment explanation
Indices: 82116945--82116978 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
82116935 TATAAAAATT
82116945 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
82116979 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:82118384 original size:23 final size:22
Alignment explanation
Indices: 82118333--82118384 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
82118323 CCTCGTCTTT
*
82118333 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
82118355 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
82118378 TTCTTTT
1 TTCTTTT
82118385 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:82120700 original size:35 final size:36
Alignment explanation
Indices: 82120661--82120729 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
82120651 CTCAACAAAT
82120661 CTGAAATTTGATAG-AAAAATAATAATAAGATGTTC
1 CTGAAATTTGATAGAAAAAATAATAATAAGATGTTC
82120696 CTGAAATTTGATAGAAAAAATAATAATAAGATGT
1 CTGAAATTTGATAGAAAAAATAATAATAAGATGT
82120730 GTTTACAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 14 0.42
36 19 0.58
ACGTcount: A:0.51, C:0.04, G:0.14, T:0.30
Consensus pattern (36 bp):
CTGAAATTTGATAGAAAAAATAATAATAAGATGTTC
Found at i:82123311 original size:20 final size:20
Alignment explanation
Indices: 82123265--82123311 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
82123255 AGCTCGTTTC
*
82123265 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
82123285 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
82123305 CAGCTCA
1 CAGCTCA
82123312 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:82138067 original size:18 final size:18
Alignment explanation
Indices: 82138046--82138084 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
82138036 GATTGAGAGT
* *
82138046 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
82138064 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
82138082 GAA
1 GAA
82138085 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:82141126 original size:27 final size:27
Alignment explanation
Indices: 82141070--82141152 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
82141060 ATACCTGAAA
** *
82141070 CCTTATGTGATAAAATGA-CGATTTTTC
1 CCTTATGTGATAAAATGACCGA-AATAC
82141097 CCTTATGTGATAAAATGACCGAAATAC
1 CCTTATGTGATAAAATGACCGAAATAC
* *
82141124 CCTCATAG-GATAAAATAACCGAAATAC
1 CCTTAT-GTGATAAAATGACCGAAATAC
82141151 CC
1 CC
82141153 CCATAGGGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 45 0.92
28 4 0.08
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (27 bp):
CCTTATGTGATAAAATGACCGAAATAC
Found at i:82141174 original size:27 final size:27
Alignment explanation
Indices: 82141107--82141222 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 27
82141097 CCTTATGTGA
* * *
82141107 TAAAATGACCGAAATACCCTCATAGGA
1 TAAAATGACTGAAATACCCCCATAGGG
* *
82141134 TAAAATAACCGAAATACCCCCATAGGG
1 TAAAATGACTGAAATACCCCCATAGGG
* * * **
82141161 TAGAATGGCTGAAATACCACTGTAGGG
1 TAAAATGACTGAAATACCCCCATAGGG
* * *
82141188 TAAAATGACTGTAATACCCCGATAAGG
1 TAAAATGACTGAAATACCCCCATAGGG
82141215 TAAAATGA
1 TAAAATGA
82141223 TAGATTTGTT
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCCCATAGGG
Found at i:82141653 original size:34 final size:34
Alignment explanation
Indices: 82141614--82141714 Score: 148
Period size: 34 Copynumber: 3.0 Consensus size: 34
82141604 CTGCACTGAT
** *
82141614 TACTGTTACTAAAATGGGCTAAGGCTTAGACTGC
1 TACTGTTACTAAAATGGGCTAAGGCCCAGAATGC
82141648 TACTGTTACTAAAATGGGCTAAGGCCCAGAATGC
1 TACTGTTACTAAAATGGGCTAAGGCCCAGAATGC
* * *
82141682 TACTGTTACTGATATGGGCTTAGGCCCAGAATG
1 TACTGTTACTAAAATGGGCTAAGGCCCAGAATG
82141715 TATTCGCTCT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 61 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (34 bp):
TACTGTTACTAAAATGGGCTAAGGCCCAGAATGC
Found at i:82141657 original size:40 final size:39
Alignment explanation
Indices: 82141603--82141692 Score: 100
Period size: 34 Copynumber: 2.4 Consensus size: 39
82141593 GATCATGGTT
**
82141603 ACTGCACTGATTACTGTTACTAAAATGGGCTAAGGCTTAG
1 ACTGCACTG-TTACTGTTACTAAAATGGGCTAAGGCCCAG
82141643 ACTG--C---TACTGTTACTAAAATGGGCTAAGGCCCAG
1 ACTGCACTGTTACTGTTACTAAAATGGGCTAAGGCCCAG
*
82141677 AATGCTACTGTTACTG
1 ACTGC-ACTGTTACTG
82141693 ATATGGGCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
34 30 0.73
37 1 0.02
38 1 0.02
40 9 0.22
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (39 bp):
ACTGCACTGTTACTGTTACTAAAATGGGCTAAGGCCCAG
Found at i:82142277 original size:76 final size:76
Alignment explanation
Indices: 82142151--82142303 Score: 288
Period size: 76 Copynumber: 2.0 Consensus size: 76
82142141 AGCCCTCGTT
82142151 TATCTTAAAGAATTGATCAATTTCACTTTTTGCTGGAGTTCGACAATCAGCCCTAAATCCCCAAA
1 TATCTTAAAGAATTGATCAATTTCACTTTTTGCTGGAGTTCGACAATCAGCCCTAAATCCCCAAA
*
82142216 TTCTAGGTTTC
66 TTCTAGGGTTC
*
82142227 TATCTTAAAGAATTGATCAATTTCACTTTTTGCTGGAGTTTGACAATCAGCCCTAAATCCCCAAA
1 TATCTTAAAGAATTGATCAATTTCACTTTTTGCTGGAGTTCGACAATCAGCCCTAAATCCCCAAA
82142292 TTCTAGGGTTC
66 TTCTAGGGTTC
82142303 T
1 T
82142304 TGCCGAATGC
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.36
Consensus pattern (76 bp):
TATCTTAAAGAATTGATCAATTTCACTTTTTGCTGGAGTTCGACAATCAGCCCTAAATCCCCAAA
TTCTAGGGTTC
Found at i:82148400 original size:21 final size:21
Alignment explanation
Indices: 82148374--82148416 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
82148364 AGTTTCAATG
82148374 CTCATATAGTTTCCGTACAGA
1 CTCATATAGTTTCCGTACAGA
82148395 CTCATATAGTTTCCGTACAGA
1 CTCATATAGTTTCCGTACAGA
82148416 C
1 C
82148417 CTGTACTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (21 bp):
CTCATATAGTTTCCGTACAGA
Found at i:82148700 original size:10 final size:10
Alignment explanation
Indices: 82148684--82148741 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
82148674 CAACTCCGAC
82148684 CAGCTCAATT
1 CAGCTCAATT
* *
82148694 GAGCTCATTT
1 CAGCTCAATT
82148704 CAGCTCAA-T
1 CAGCTCAATT
82148713 CGAGCTCAATT
1 C-AGCTCAATT
*
82148724 TAGCTACAATT
1 CAGCT-CAATT
82148735 CAGCTCA
1 CAGCTCA
82148742 TTTATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 27 0.69
11 10 0.26
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:82148707 original size:20 final size:20
Alignment explanation
Indices: 82148684--82148744 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
82148674 CAACTCCGAC
82148684 CAGCTCAATTGAGCTCATTT
1 CAGCTCAATTGAGCTCATTT
*
82148704 CAGCTCAATCGAGCTCAATTT
1 CAGCTCAATTGAGCTC-ATTT
*
82148725 -AGCTACAATTCAGCTCATTT
1 CAGCT-CAATTGAGCTCATTT
82148745 ATTTTATTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (20 bp):
CAGCTCAATTGAGCTCATTT
Found at i:82150401 original size:30 final size:31
Alignment explanation
Indices: 82150367--82150463 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
82150357 AGCTCACTCC
*
82150367 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
82150397 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
82150427 TAGCTCAACTTT-AGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
82150457 TAGCTCA
1 TAGCTCA
82150464 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
30 48 0.92
31 4 0.08
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:82151021 original size:24 final size:24
Alignment explanation
Indices: 82150975--82151027 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
82150965 AAAGTCTGTC
**
82150975 AGGAGAGGATTTAGGAGTTGATAA
1 AGGAGAGGATTTAGGAGGAGATAA
*
82150999 AGGATAGGATTTAGGAGGAGATAA
1 AGGAGAGGATTTAGGAGGAGATAA
*
82151023 GGGAG
1 AGGAG
82151028 GAAATCTAGG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.42, T:0.21
Consensus pattern (24 bp):
AGGAGAGGATTTAGGAGGAGATAA
Found at i:82152478 original size:28 final size:28
Alignment explanation
Indices: 82152435--82152534 Score: 96
Period size: 28 Copynumber: 3.6 Consensus size: 28
82152425 AGGAAGCGTC
*
82152435 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
* * * *
82152463 CTGGTGGCTCTACCACATA-TATTTGTT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
* *
82152490 CTGGTGGTTCTGCCAC-GATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATTATCTG-AT
* *
82152518 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
82152535 TTATCAGTTC
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
26 1 0.02
27 25 0.45
28 30 0.54
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATTATCTGAT
Found at i:82152505 original size:27 final size:27
Alignment explanation
Indices: 82152435--82152547 Score: 104
Period size: 27 Copynumber: 4.1 Consensus size: 27
82152425 AGGAAGCGTC
* * *
82152435 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
* *
82152463 CTGGTGGCTCTACCACATATATTTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
*
82152490 CTGGTGGTTCTGCCACGAT-TATCTGTAT
1 CTGGTGGCTCTGCCAC-ATATATCTGT-T
* * *
82152518 CTGGTGACTCTGTCACAT-TATCAGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
82152544 CTGG
1 CTGG
82152548 CAACCATACT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 5 0.07
27 34 0.48
28 32 0.45
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:82158745 original size:145 final size:145
Alignment explanation
Indices: 82158482--82158770 Score: 569
Period size: 145 Copynumber: 2.0 Consensus size: 145
82158472 GGATCAAATG
82158482 CATGGGATGATAGAATGCATGAATGGCTTAAGTGCATGTATGGTGGCTGTCTCCTAACTTTCCAA
1 CATGGGATGATAGAATGCATGAATGGCTTAAGTGCATGTATGGTGGCTGTCTCCTAACTTTCCAA
82158547 GGTACTTATTCGGCCCAGAAGTAGTTGTTCACACTTTGAATTGACCTATAAGCTACTACACATGC
66 GGTACTTATTCGGCCCAGAAGTAGTTGTTCACACTTTGAATTGACCTATAAGCTACTACACATGC
82158612 ATGGATGGGTTCAAC
131 ATGGATGGGTTCAAC
82158627 CATGGGATGATAGAATGCATGAATGGCTTAAGTGCATGTATGGTGGCTGTCTCCTAACTTTCCAA
1 CATGGGATGATAGAATGCATGAATGGCTTAAGTGCATGTATGGTGGCTGTCTCCTAACTTTCCAA
*
82158692 GGTACTTATTCGGCCCAGAAGTAGTTGTTCACACTTTGAATTGACCTATAAGCTACTATACATGC
66 GGTACTTATTCGGCCCAGAAGTAGTTGTTCACACTTTGAATTGACCTATAAGCTACTACACATGC
82158757 ATGGATGGGTTCAA
131 ATGGATGGGTTCAA
82158771 GAACGTCCAA
Statistics
Matches: 143, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 143 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (145 bp):
CATGGGATGATAGAATGCATGAATGGCTTAAGTGCATGTATGGTGGCTGTCTCCTAACTTTCCAA
GGTACTTATTCGGCCCAGAAGTAGTTGTTCACACTTTGAATTGACCTATAAGCTACTACACATGC
ATGGATGGGTTCAAC
Found at i:82164323 original size:15 final size:14
Alignment explanation
Indices: 82164287--82164341 Score: 65
Period size: 15 Copynumber: 3.8 Consensus size: 14
82164277 TCTATTGATC
82164287 GAGAAAAAGAAAAA
1 GAGAAAAAGAAAAA
*
82164301 GAGAAAAACAAAAA
1 GAGAAAAAGAAAAA
*
82164315 GAGTGAAAAGAAAAA
1 GAG-AAAAAGAAAAA
*
82164330 GAAAGAAAAGAA
1 GAGA-AAAAGAA
82164342 TGAGGAGAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 16 0.47
15 18 0.53
ACGTcount: A:0.75, C:0.02, G:0.22, T:0.02
Consensus pattern (14 bp):
GAGAAAAAGAAAAA
Found at i:82171383 original size:11 final size:11
Alignment explanation
Indices: 82171367--82171397 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
82171357 TGATATGAAC
82171367 AATCACAAACT
1 AATCACAAACT
82171378 AATCACAAACT
1 AATCACAAACT
*
82171389 AAACACAAA
1 AATCACAAA
82171398 ACATAAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.61, C:0.26, G:0.00, T:0.13
Consensus pattern (11 bp):
AATCACAAACT
Found at i:82171664 original size:24 final size:21
Alignment explanation
Indices: 82171621--82171667 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
82171611 TAGTAAAACA
*
82171621 AAAATAATATTTATTTAGTAG
1 AAAATAATATTTATTAAGTAG
82171642 AAAATAATATTATACTATAAGTAG
1 AAAATAATATT-TA-T-TAAGTAG
82171666 AA
1 AA
82171668 TAGGGTGGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 11 0.50
22 2 0.09
23 1 0.05
24 8 0.36
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (21 bp):
AAAATAATATTTATTAAGTAG
Found at i:82177210 original size:18 final size:19
Alignment explanation
Indices: 82177173--82177211 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
82177163 ATTACAAAAC
*
82177173 AATTCAAAATAATTTTTAA
1 AATTCAAAATAATTTATAA
*
82177192 AATTCAAAGT-ATTTATAA
1 AATTCAAAATAATTTATAA
82177210 AA
1 AA
82177212 ATGATAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (19 bp):
AATTCAAAATAATTTATAA
Found at i:82179565 original size:5 final size:5
Alignment explanation
Indices: 82179555--82179591 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
82179545 AATTTGTGTG
*
82179555 TTATT TTATT TTTTCT TTATT TTATT TTATT TTATT T
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT T
82179592 CTTTCACAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:82184020 original size:5 final size:5
Alignment explanation
Indices: 82184010--82184063 Score: 81
Period size: 5 Copynumber: 10.4 Consensus size: 5
82184000 AATTTGTGTG
*
82184010 TTATT TTATT TTTTCT TTATT TTATT TTATT TTATT TTATT TTATT TTAATT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TTATT TTATT TT-ATT
82184062 TT
1 TT
82184064 TTCACAGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
5 36 0.80
6 9 0.20
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:82184883 original size:25 final size:25
Alignment explanation
Indices: 82184849--82184899 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
82184839 GTAGGGTGAT
82184849 AGGTTTGAAGTTTAGAAAGATATGA
1 AGGTTTGAAGTTTAGAAAGATATGA
82184874 AGGTTTGAAGTTTAGAAAGATATGA
1 AGGTTTGAAGTTTAGAAAGATATGA
82184899 A
1 A
82184900 AAAAAATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.31
Consensus pattern (25 bp):
AGGTTTGAAGTTTAGAAAGATATGA
Found at i:82186603 original size:26 final size:26
Alignment explanation
Indices: 82186574--82186735 Score: 297
Period size: 26 Copynumber: 6.2 Consensus size: 26
82186564 TGGTACAAAT
* *
82186574 TGATAATAGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTTTA
82186600 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTTA
82186626 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTTA
82186652 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTTA
82186678 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTTA
*
82186704 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTTA
82186730 TGATAA
1 TGATAA
82186736 GAATTTCATG
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 133 1.00
ACGTcount: A:0.32, C:0.01, G:0.26, T:0.41
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTTA
Found at i:82188386 original size:27 final size:27
Alignment explanation
Indices: 82188356--82188495 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 27
82188346 GAGGAAGCGT
* * *
82188356 TCTGATGGCTATGCCACAAATATTTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
82188383 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
82188410 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
82188437 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
82188465 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
82188491 TCTGG
1 TCTGG
82188496 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.05
27 80 0.80
28 15 0.15
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:82188441 original size:54 final size:55
Alignment explanation
Indices: 82188356--82188495 Score: 185
Period size: 54 Copynumber: 2.6 Consensus size: 55
82188346 GAGGAAGCGT
* * * * *
82188356 TCTGATGGCTATGCCACAAATATTTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
82188410 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
82188465 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
82188496 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
54 58 0.76
55 18 0.24
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:82188581 original size:19 final size:22
Alignment explanation
Indices: 82188557--82188596 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
82188547 CTCCCCACAC
82188557 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
82188576 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
82188597 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:82201969 original size:173 final size:173
Alignment explanation
Indices: 82201680--82202004 Score: 497
Period size: 173 Copynumber: 1.9 Consensus size: 173
82201670 GTTTTAAGGA
* * * *
82201680 AGTTCTTGAAGAGAAGTATGTATCTAGATGCTAAGAAAGGTATCCTTCATGTTAATCTATTGGTG
1 AGTTCTTGAAGAGAAATATGTATCTAAATGCTAAGAAAGGTATCATTCATGTTAATCTATTAGTG
* * **
82201745 TTGAATATGGGCGTACTCGCAGTTGAGAAACATAAAAAATTGTTTATTTGAATTCGTCTGTGTTG
66 TTGAATATGGGCGTACTCACAGTTAAGAAACATAAAAAATTGTTTATTTGAAACCGTCTGTGTTG
82201810 TATAGTGCTGAAATCTAATTATAATTAGATTGTAAAGTAATTG
131 TATAGTGCTGAAATCTAATTATAATTAGATTGTAAAGTAATTG
* * * *
82201853 AGTTCTTGAAGAGAAATATGTGTCTAAATGCTAGGAAGGGTATCATTCATGTTAATCTGTTAGTG
1 AGTTCTTGAAGAGAAATATGTATCTAAATGCTAAGAAAGGTATCATTCATGTTAATCTATTAGTG
* * *
82201918 TTGAATATGGGCGTACTCACAGTTAAGAAACATAAGAAATTTTTTATTTGAAACCGTTTGTGTTG
66 TTGAATATGGGCGTACTCACAGTTAAGAAACATAAAAAATTGTTTATTTGAAACCGTCTGTGTTG
* *
82201983 TATAGTGTTGAAATCTGATTAT
131 TATAGTGCTGAAATCTAATTAT
82202005 CTGGTATATG
Statistics
Matches: 135, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
173 135 1.00
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (173 bp):
AGTTCTTGAAGAGAAATATGTATCTAAATGCTAAGAAAGGTATCATTCATGTTAATCTATTAGTG
TTGAATATGGGCGTACTCACAGTTAAGAAACATAAAAAATTGTTTATTTGAAACCGTCTGTGTTG
TATAGTGCTGAAATCTAATTATAATTAGATTGTAAAGTAATTG
Found at i:82207764 original size:53 final size:55
Alignment explanation
Indices: 82207701--82207815 Score: 153
Period size: 60 Copynumber: 2.0 Consensus size: 55
82207691 CAACAAGGAG
82207701 CCCAAAA-C-TCAATTATATATATTAAAGTTCAAGTTGACCTTAAGTATGACCTC
1 CCCAAAACCATCAATTATATATATTAAAGTTCAAGTTGACCTTAAGTATGACCTC
**
82207754 CCCAAAACTCAATTATCAATTATATATATTAAAGTTCAAGTTGATGTTAAGTATGACCTC
1 CCCAAAAC-C----ATCAATTATATATATTAAAGTTCAAGTTGACCTTAAGTATGACCTC
82207814 CC
1 CC
82207816 ATTTGTTTTG
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
53 7 0.13
55 1 0.02
60 45 0.85
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (55 bp):
CCCAAAACCATCAATTATATATATTAAAGTTCAAGTTGACCTTAAGTATGACCTC
Found at i:82215762 original size:12 final size:11
Alignment explanation
Indices: 82215735--82215809 Score: 52
Period size: 12 Copynumber: 6.8 Consensus size: 11
82215725 TATTAAATAC
82215735 AATTTAATAA-
1 AATTTAATAAT
82215745 AA--TAATATAT
1 AATTTAATA-AT
*
82215755 AATTTAATAAC
1 AATTTAATAAT
*
82215766 ATTCTTAAT-AT
1 AAT-TTAATAAT
82215777 AATTATTAATAAT
1 AA-T-TTAATAAT
82215790 -ATTTAATAAT
1 AATTTAATAAT
82215800 AATTTTAATA
1 AA-TTTAATA
82215810 TAAAATTATT
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
8 5 0.10
9 1 0.02
10 12 0.24
11 7 0.14
12 24 0.47
13 2 0.04
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (11 bp):
AATTTAATAAT
Found at i:82215801 original size:13 final size:12
Alignment explanation
Indices: 82215747--82215809 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
82215737 TTTAATAAAA
82215747 TAATATATAA-TT
1 TAATA-ATAATTT
*
82215759 TAATAA-CATTCT
1 TAATAATAATT-T
82215771 TAAT-ATAATTAT
1 TAATAATAATT-T
82215783 TAATAAT-A-TT
1 TAATAATAATTT
82215793 TAATAATAATTT
1 TAATAATAATTT
82215805 TAATA
1 TAATA
82215810 TAAAATTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
10 9 0.21
11 5 0.12
12 26 0.62
13 2 0.05
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (12 bp):
TAATAATAATTT
Found at i:82216215 original size:27 final size:27
Alignment explanation
Indices: 82216133--82216221 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 27
82216123 AATAAAAAAT
*
82216133 AAAAACTCATAG-TCCTT-TGTTATTC
1 AAAAACTCATAGTTCTTTATGTTATTC
* *
82216158 AAAAAC-CATAGTCCTTAATTTTAGGTTATTC
1 AAAAACTCATAG---TT--CTTTATGTTATTC
82216189 AAAAACTCATAGTTCTTTATGTTATTC
1 AAAAACTCATAGTTCTTTATGTTATTC
82216216 AAAAAC
1 AAAAAC
82216222 ATGAAGAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
24 5 0.10
25 6 0.12
27 17 0.33
28 1 0.02
29 2 0.04
30 2 0.04
31 13 0.25
32 5 0.10
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.38
Consensus pattern (27 bp):
AAAAACTCATAGTTCTTTATGTTATTC
Done.