Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 245 of 284
Found at i:82221873 original size:20 final size:21
Alignment explanation
Indices: 82221830--82221875 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
82221820 ACTATTTTAT
82221830 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
82221850 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
82221869 TATGGGC
1 TATGGGC
82221876 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:82221935 original size:60 final size:60
Alignment explanation
Indices: 82221868--82222004 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 60
82221858 AACTGTGTTA
*
82221868 ATATGGGCAAGGCCCAACATA-TCTCA-ACTTGTAATAGGGCTACGGCCCAGATTGACACTG
1 ATATGGGCAAGGCCCAACATACTCTCATA-TTGTAAT-GGGCTACGGCCCAGATTAACACTG
* ** * * * * *
82221928 ATATGGGCTAGGCCCAGTATACTCTGATATTGTAATGGGCTATGGTCCAGATTAATATTG
1 ATATGGGCAAGGCCCAACATACTCTCATATTGTAATGGGCTACGGCCCAGATTAACACTG
82221988 ATATGGGCTAAGGCCCA
1 ATATGGGC-AAGGCCCA
82222005 GTTAACTCTG
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
60 45 0.70
61 18 0.28
62 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (60 bp):
ATATGGGCAAGGCCCAACATACTCTCATATTGTAATGGGCTACGGCCCAGATTAACACTG
Found at i:82222005 original size:28 final size:28
Alignment explanation
Indices: 82221904--82222009 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 28
82221894 ACTTGTAATA
* * * *
82221904 GGGCTACGGCCCAGATTGACACTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
*
82221932 GGGCT-AGGCCCAGTATACTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG---A-T-TAATATTGAT-AT
* *
82221964 GGGCTATGGTCCAGATTAATATTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
82221992 GGGCTAAGGCCCAG-TTAA
1 GGGCTAAGGCCCAGATTAA
82222010 CTCTGATTTC
Statistics
Matches: 62, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
27 11 0.18
28 26 0.42
29 2 0.03
30 2 0.03
31 2 0.03
32 13 0.21
33 6 0.10
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATATTGATAT
Found at i:82222013 original size:61 final size:61
Alignment explanation
Indices: 82221896--82222016 Score: 165
Period size: 60 Copynumber: 2.0 Consensus size: 61
82221886 ATATCTCAAC
*
82221896 TTGTAATAGGGCTACGGCCCAGATTGACACTGATATGGGCTAGGCCCAGTATACTCTGATA
1 TTGTAATAGGGCTACGGCCCAGATTAACACTGATATGGGCTAGGCCCAGTATACTCTGATA
* * * *
82221957 TTGTAAT-GGGCTATGGTCCAGATTAATATTGATATGGGCTAAGGCCCAGT-TAACTCTGAT
1 TTGTAATAGGGCTACGGCCCAGATTAACACTGATATGGGCT-AGGCCCAGTAT-ACTCTGAT
82222017 TTCTGAAAAG
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
60 29 0.55
61 24 0.45
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGATTAACACTGATATGGGCTAGGCCCAGTATACTCTGATA
Found at i:82225954 original size:20 final size:20
Alignment explanation
Indices: 82225911--82225955 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
82225901 ATTGTTTTGT
*
82225911 TATGGGCCAACTGTATTTAA
1 TATGGGCCAACTGTAGTTAA
82225931 -ATGGGCCCAACTGT-GTTAA
1 TATGGG-CCAACTGTAGTTAA
82225950 TATGGG
1 TATGGG
82225956 TAAGGCCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (20 bp):
TATGGGCCAACTGTAGTTAA
Found at i:82227088 original size:27 final size:26
Alignment explanation
Indices: 82227055--82227108 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
82227045 GAAGGTTTTA
*
82227055 TAAATAAATATTATATT-TAAATATAAT
1 TAAATAAAAATTA-ATTATAAATA-AAT
82227082 TAAATAAAAATTAATTATAAATAAAT
1 TAAATAAAAATTAATTATAAATAAAT
82227108 T
1 T
82227109 CCGAAAACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (26 bp):
TAAATAAAAATTAATTATAAATAAAT
Found at i:82229266 original size:29 final size:30
Alignment explanation
Indices: 82229233--82229310 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 30
82229223 TCTAAAATTG
82229233 GTAATACATATTTTTTAAAT-T-ATAAAAAT
1 GTAATACATA-TTTTTAAATGTAATAAAAAT
* *
82229262 GTAATACGTATTTTTAATTGTAATAAAAAT
1 GTAATACATATTTTTAAATGTAATAAAAAT
*
82229292 GTAACACATAATTTTTAAA
1 GTAATACAT-ATTTTTAAA
82229311 CCTTAAATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 8 0.20
29 10 0.24
30 15 0.37
31 8 0.20
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.42
Consensus pattern (30 bp):
GTAATACATATTTTTAAATGTAATAAAAAT
Found at i:82229565 original size:12 final size:12
Alignment explanation
Indices: 82229548--82229580 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
82229538 TATTAAAAGT
82229548 AAAAATTAATTA
1 AAAAATTAATTA
*
82229560 AAAAATT-ACTA
1 AAAAATTAATTA
82229571 AAAAATTAAT
1 AAAAATTAAT
82229581 ATATAACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (12 bp):
AAAAATTAATTA
Found at i:82231150 original size:26 final size:26
Alignment explanation
Indices: 82231104--82231158 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
82231094 TTGAAATACT
*
82231104 AAGGGATGTTTTAATGGAGTAA-TTA
1 AAGGGATGTTTTAATGAAGTAATTTA
82231129 AAGGGATGTTTTTGAAT-AAGTAATTTA
1 AAGGGATG-TTTT-AATGAAGTAATTTA
82231156 AAG
1 AAG
82231159 TATGTTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 8 0.31
26 9 0.35
27 9 0.35
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.36
Consensus pattern (26 bp):
AAGGGATGTTTTAATGAAGTAATTTA
Found at i:82242582 original size:58 final size:58
Alignment explanation
Indices: 82242510--82242625 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
82242500 GAAACACACC
82242510 ATTCTCCCCACCATTTCTTTTATCTTCGGTAGAATGGTTAATTACCCAAACAACTTCT
1 ATTCTCCCCACCATTTCTTTTATCTTCGGTAGAATGGTTAATTACCCAAACAACTTCT
82242568 ATTCTCCCCACCATTTCTTTTATCTTCGGTAGAATGGTTAATTACCCAAACAACTTCT
1 ATTCTCCCCACCATTTCTTTTATCTTCGGTAGAATGGTTAATTACCCAAACAACTTCT
82242626 CAAATTCAAG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.38
Consensus pattern (58 bp):
ATTCTCCCCACCATTTCTTTTATCTTCGGTAGAATGGTTAATTACCCAAACAACTTCT
Found at i:82252414 original size:25 final size:25
Alignment explanation
Indices: 82252381--82252439 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
82252371 CATCCCGACG
*
82252381 AGAAGAAAATGGCACATCGACAACA
1 AGAAGAAAATGGCACACCGACAACA
*
82252406 AGAAGAAAATGGCACCCCGACAACA
1 AGAAGAAAATGGCACACCGACAACA
82252431 AGAAGAAAA
1 AGAAGAAAA
82252440 CGACGTCCCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.54, C:0.20, G:0.20, T:0.05
Consensus pattern (25 bp):
AGAAGAAAATGGCACACCGACAACA
Found at i:82256526 original size:59 final size:59
Alignment explanation
Indices: 82256398--82256528 Score: 174
Period size: 59 Copynumber: 2.2 Consensus size: 59
82256388 ATGTTAAAAA
* * * * *
82256398 ATAAATATATAATATATGCATGCTTTGATTGGTTTAATGTATGTTGTATTTTTGTATGT
1 ATAAATATATAATATATACATGCTTTGATTGGTTTAATGCATGTTGAATTTTGGAATGT
*
82256457 ATAAATATATAATATATACATGCTTTGATTGGTTTAATGCATGTT-AATTTTGGGAAATTAT
1 ATAAATATATAATATATACATGCTTTGATTGGTTTAATGCATGTTGAATTTT-GG-AA-TGT
82256518 ATAAATATATA
1 ATAAATATATA
82256529 TGATTATCTT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
58 5 0.08
59 44 0.70
60 1 0.02
61 13 0.21
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.47
Consensus pattern (59 bp):
ATAAATATATAATATATACATGCTTTGATTGGTTTAATGCATGTTGAATTTTGGAATGT
Found at i:82256836 original size:88 final size:88
Alignment explanation
Indices: 82256687--82256865 Score: 340
Period size: 88 Copynumber: 2.0 Consensus size: 88
82256677 GAAATATTAA
82256687 GATGATTATATGTTTTTGTGATTCACGCGTTTATTAATTGACCCAAAGGTAAGTTAATATTTGGC
1 GATGATTATATGTTTTTGTGATTCACGCGTTTATTAATTGACCCAAAGGTAAGTTAATATTTGGC
82256752 AGAATTTCAACGACATCTATGGT
66 AGAATTTCAACGACATCTATGGT
*
82256775 GATGATTATATGTTTTTGTGATTCACGCGTTTATTAATTGACCCAAAGGTAAGTTAATATTTGGT
1 GATGATTATATGTTTTTGTGATTCACGCGTTTATTAATTGACCCAAAGGTAAGTTAATATTTGGC
*
82256840 AGAATTTCAACGACATCTGTGGT
66 AGAATTTCAACGACATCTATGGT
82256863 GAT
1 GAT
82256866 AAATGTGTGA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 89 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (88 bp):
GATGATTATATGTTTTTGTGATTCACGCGTTTATTAATTGACCCAAAGGTAAGTTAATATTTGGC
AGAATTTCAACGACATCTATGGT
Found at i:82261447 original size:40 final size:40
Alignment explanation
Indices: 82261403--82261664 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
82261393 GCTCCTCGTT
* *
82261403 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
82261443 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
82261483 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
82261522 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
82261561 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
82261600 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
82261641 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82261665 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:82269538 original size:79 final size:80
Alignment explanation
Indices: 82269440--82269622 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
82269430 TCCTCGTTCA
* *
82269440 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
82269503 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* **
82269520 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
82269584 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
82269599 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
82269623 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:82269622 original size:40 final size:40
Alignment explanation
Indices: 82269438--82269622 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
82269428 GCTCCTCGTT
* *
82269438 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
82269478 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
82269518 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
82269557 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
82269598 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82269623 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:82273651 original size:29 final size:29
Alignment explanation
Indices: 82273618--82273674 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
82273608 GGAATCAAGA
82273618 CTTGCTTACATATTATATCAATTACAATT
1 CTTGCTTACATATTATATCAATTACAATT
82273647 CTTGCTTACATATTATATCAATTACAAT
1 CTTGCTTACATATTATATCAATTACAAT
82273675 CAATATTCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.35, C:0.18, G:0.04, T:0.44
Consensus pattern (29 bp):
CTTGCTTACATATTATATCAATTACAATT
Found at i:82276383 original size:16 final size:15
Alignment explanation
Indices: 82276344--82276382 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
82276334 CAATTACAAT
*
82276344 ATTTAATGTT-CATA
1 ATTTAATTTTACATA
*
82276358 TTTTAATTTTACATA
1 ATTTAATTTTACATA
82276373 ATTTAATTTT
1 ATTTAATTTT
82276383 TTAATACTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (15 bp):
ATTTAATTTTACATA
Found at i:82277075 original size:6 final size:6
Alignment explanation
Indices: 82277064--82277088 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
82277054 TGTTGATCCC
82277064 CTACTG CTACTG CTACTG CTACTG C
1 CTACTG CTACTG CTACTG CTACTG C
82277089 AGTTGGAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.36, G:0.16, T:0.32
Consensus pattern (6 bp):
CTACTG
Found at i:82281636 original size:133 final size:133
Alignment explanation
Indices: 82281103--82281636 Score: 541
Period size: 133 Copynumber: 4.0 Consensus size: 133
82281093 TTTTTTAGAG
* ** *
82281103 TTTTTAAGAAACATGAGG-GAAATTCCAAAGGGGATGTTCGATTATTTGGAAGC-AAC-AGGAAA
1 TTTTTAA-AAACAT-AGGTGAAATTCTAAA-GGGACCTTCGATTATTTTG-AGCAAACGA-GAAA
* ** * *
82281165 TTGCAACCCAGCACGATAGGGCACGATTCCTTGAATTGCCAAACATCGAACATT-ACCTTCGTTT
61 TTGCAACCCAACACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATTCGCCTTCGTTT
** *
82281229 TGGA-GAG
126 TAAAGGAT
* * *
82281236 TTTTTAGAAAACATAAGTGAAATTCAAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGC
1 TTTTTA-AAAACATAGGTGAAATTCTAAAGGGACCTTCGATTATTTTGAGCAAACGAGAAATTGC
* ** * * *
82281301 AACCCAGCACGATAGGGCACGATTTGGTGAATTGCCGAATATCGAACATT-GCCTTTG-TTTAAA
65 AACCCAACACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATTCGCCTTCGTTTTAAA
82281364 GGA-
130 GGAT
* *
82281367 TTTTTAAAAGACGTAGGTGAAATTCTAAAGGGACCTTCGATTACTTTGAGCAAACGAGAAATTGC
1 TTTTTAAAA-ACATAGGTGAAATTCTAAAGGGACCTTCGATTATTTTGAGCAAACGAGAAATTGC
* * * * * * *
82281432 CACCCAACACGTTAGGGCACAATCCCGCGAATTGCCAAATATCGAATA-TCGCCTCCGTTTTAAG
65 AACCCAACACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATTCGCCTTCGTTTTAAA
*
82281496 GGGT
130 GGAT
* ** * * *
82281500 TTTTTAAAAGACATGGGTGAAATTCTAAAGGGATATTCGATCATTTTGAGCAAATGCGAAATTGC
1 TTTTTAAAA-ACATAGGTGAAATTCTAAAGGGACCTTCGATTATTTTGAGCAAACGAGAAATTGC
* * *
82281565 AACCCAACACGTTAGGGCACGATTTCGCGAATTGCCAAATATC-AA-ATCTCGTCTTCGTTTTAA
65 AACCCAACACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACAT-TCGCCTTCGTTTTAA
*
82281628 AGAAT
129 AGGAT
82281633 TTTT
1 TTTT
82281637 AACTGAATAA
Statistics
Matches: 339, Mismatches: 51, Indels: 22
0.82 0.12 0.05
Matches are distributed among these distances:
130 4 0.01
131 106 0.31
132 90 0.27
133 138 0.41
134 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (133 bp):
TTTTTAAAAACATAGGTGAAATTCTAAAGGGACCTTCGATTATTTTGAGCAAACGAGAAATTGCA
ACCCAACACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATTCGCCTTCGTTTTAAAG
GAT
Found at i:82285302 original size:48 final size:48
Alignment explanation
Indices: 82285231--82285327 Score: 160
Period size: 48 Copynumber: 2.0 Consensus size: 48
82285221 TAACCATTTT
82285231 AATTGGTGGGTCTTATTAAATTGGTTATAATTAGAGCACCTCA-ATTAG
1 AATTGGTGGGTCTTATTAAATTGGTTATAATTAGAGCACCT-AGATTAG
* *
82285279 AATTGGTGGGTCTTATTGAATTGGTTATAATTGGAGCACCTAGATTAG
1 AATTGGTGGGTCTTATTAAATTGGTTATAATTAGAGCACCTAGATTAG
82285327 A
1 A
82285328 CTTTTCAACT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 1 0.02
48 45 0.98
ACGTcount: A:0.30, C:0.09, G:0.24, T:0.37
Consensus pattern (48 bp):
AATTGGTGGGTCTTATTAAATTGGTTATAATTAGAGCACCTAGATTAG
Found at i:82297664 original size:21 final size:18
Alignment explanation
Indices: 82297640--82297682 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 18
82297630 AAGGTAAAAA
82297640 TATTATTATAATAATATTTAT
1 TATTATTAT-ATAAT-TTT-T
*
82297661 TATTTTTATATAATTTTT
1 TATTATTATATAATTTTT
82297679 TATT
1 TATT
82297683 GAATTAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 5 0.24
19 3 0.14
20 5 0.24
21 8 0.38
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TATTATTATATAATTTTT
Found at i:82298707 original size:8 final size:8
Alignment explanation
Indices: 82298696--82298722 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
82298686 ACTAAAATTT
82298696 AAAAAATA
1 AAAAAATA
82298704 AAAAAATA
1 AAAAAATA
82298712 AAAAAATA
1 AAAAAATA
82298720 AAA
1 AAA
82298723 TAAGGTAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATA
Found at i:82306872 original size:100 final size:100
Alignment explanation
Indices: 82306699--82306909 Score: 395
Period size: 100 Copynumber: 2.1 Consensus size: 100
82306689 AGAAGAAAAA
*
82306699 ACAAAAAAAGGGGCAGAAAAGAAGCAAGAAAACAAGGAAATAGATAGCAAATCCATGGTATTTCG
1 ACAAAAAAAGGGGCAGAAAAGAAGCAAGAAAACAAGGAAATAGATAGCAAATCCATAGTATTTCG
*
82306764 GCTACAAAGCCTGAAATCCCGGATTTTTTTTGGGT
66 GCTACAAAGCCTGAAATCCCAGATTTTTTTTGGGT
*
82306799 ACAAAAAAAGGGGCAGAAAAGAAGCAAGAAAACAAGGAAATAGATAGCAAATCCCTAGTATTTCG
1 ACAAAAAAAGGGGCAGAAAAGAAGCAAGAAAACAAGGAAATAGATAGCAAATCCATAGTATTTCG
82306864 GCTACAAAGCCTGAAATCCCAGATTTTTTTTGGGT
66 GCTACAAAGCCTGAAATCCCAGATTTTTTTTGGGT
82306899 ACAAAAAAAGG
1 ACAAAAAAAGG
82306910 AATATTGTAA
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 108 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (100 bp):
ACAAAAAAAGGGGCAGAAAAGAAGCAAGAAAACAAGGAAATAGATAGCAAATCCATAGTATTTCG
GCTACAAAGCCTGAAATCCCAGATTTTTTTTGGGT
Found at i:82306949 original size:28 final size:28
Alignment explanation
Indices: 82306909--82306962 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
82306899 ACAAAAAAAG
82306909 GAATATTGTAAAAAAGGGGAAGGGTTAA
1 GAATATTGTAAAAAAGGGGAAGGGTTAA
*
82306937 GAATATTGTAAAAACGGGGAAGGGTT
1 GAATATTGTAAAAAAGGGGAAGGGTT
82306963 TTGATAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.43, C:0.02, G:0.33, T:0.22
Consensus pattern (28 bp):
GAATATTGTAAAAAAGGGGAAGGGTTAA
Found at i:82311777 original size:43 final size:43
Alignment explanation
Indices: 82311716--82311806 Score: 164
Period size: 43 Copynumber: 2.1 Consensus size: 43
82311706 ATCGCGGACA
* *
82311716 AGAGCTGGCCTCGTTGCTTAGAAAAATTAGGACTTTAAGTGTT
1 AGAGCTGGCCTCGTTGCTTAAAAAAATAAGGACTTTAAGTGTT
82311759 AGAGCTGGCCTCGTTGCTTAAAAAAATAAGGACTTTAAGTGTT
1 AGAGCTGGCCTCGTTGCTTAAAAAAATAAGGACTTTAAGTGTT
82311802 AGAGC
1 AGAGC
82311807 GAAATTTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (43 bp):
AGAGCTGGCCTCGTTGCTTAAAAAAATAAGGACTTTAAGTGTT
Found at i:82315123 original size:45 final size:43
Alignment explanation
Indices: 82315055--82315142 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 43
82315045 CAGCTGATGA
* *
82315055 TCGGAAGAGGGGCCCTACTCGGAAGGGGACTTGGGAGACATCTG
1 TCGGAAGAGGGGCCCTACCCGGAA-GGGACTTGGGAAACATCTG
*
82315099 NTCGGAAGAGGGGCCTTACCCGGAAGGGACTTGGGAAACATCTG
1 -TCGGAAGAGGGGCCCTACCCGGAAGGGACTTGGGAAACATCTG
82315143 CAAGGAAGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.24, C:0.20, G:0.39, T:0.16
Consensus pattern (43 bp):
TCGGAAGAGGGGCCCTACCCGGAAGGGACTTGGGAAACATCTG
Found at i:82315150 original size:44 final size:45
Alignment explanation
Indices: 82315057--82315150 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 45
82315047 GCTGATGATC
* * ***
82315057 GGAAGAGGGGCCCTACTCGGAAGGGGACTTGGGAGACATCTGNTC
1 GGAAGAGGGGCCCTACCCGGAAGGGGACTTGGGAAACATCTGCAA
*
82315102 GGAAGAGGGGCCTTACCCGGAA-GGGACTTGGGAAACATCTGCAA
1 GGAAGAGGGGCCCTACCCGGAAGGGGACTTGGGAAACATCTGCAA
82315146 GGAAG
1 GGAAG
82315151 GGTTAAAACG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 23 0.53
45 20 0.47
ACGTcount: A:0.27, C:0.19, G:0.39, T:0.14
Consensus pattern (45 bp):
GGAAGAGGGGCCCTACCCGGAAGGGGACTTGGGAAACATCTGCAA
Found at i:82321301 original size:44 final size:44
Alignment explanation
Indices: 82320195--82321289 Score: 1977
Period size: 44 Copynumber: 25.0 Consensus size: 44
82320185 TTCCTTGAAA
* * *
82320195 AAGATAACAGATTTGGCATCTCTGTAGCCGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* * *
82320239 AAGATAACAGATTTGACGTCTCTGTAGTGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* *
82320283 AAGAT----GATTTGGCATCTCTATAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* *
82320323 AAGATAACAGATTTGGAGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320367 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320411 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320455 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320499 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320543 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320587 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320631 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320675 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320719 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320763 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320807 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320851 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320895 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320939 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82320983 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82321027 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
82321071 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
*
82321115 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCC
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* *
82321159 AAGATAACAGATTTGGCGTCTCTGTAGTGGCGGA-AGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
* * * *
82321202 AAGATAACAGATTTGGCGTCTCTGTAGCAGCAGAGAGCAGATGG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
*
82321246 AAGATAACAGATTTGGCGTCTCTGTAGCGGCAGG-GAGCAGATCG
1 AAGATAGCAGATTTGGCGTCTCTGTAGCGGC-GGAGAGCAGATCG
82321290 GAAATAACAG
Statistics
Matches: 1021, Mismatches: 24, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
40 36 0.04
43 39 0.04
44 945 0.93
45 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.35, T:0.21
Consensus pattern (44 bp):
AAGATAGCAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG
Found at i:82328569 original size:44 final size:44
Alignment explanation
Indices: 82328519--82328604 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
82328509 TAAGTTCCAA
* * *
82328519 TGGAGTAGATTGAAGCTACAAATCTCTTCTCCCTGAAATTACAT
1 TGGAGTAAATCGAAGCTACAAATCTCATCTCCCTGAAATTACAT
* *
82328563 TGGAGTAAATCGAAGCTACAAGTCTCATCTCCCTGAAGTTAC
1 TGGAGTAAATCGAAGCTACAAATCTCATCTCCCTGAAATTAC
82328605 GGTGGGTGAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29
Consensus pattern (44 bp):
TGGAGTAAATCGAAGCTACAAATCTCATCTCCCTGAAATTACAT
Found at i:82328602 original size:176 final size:176
Alignment explanation
Indices: 82328278--82328602 Score: 438
Period size: 176 Copynumber: 1.8 Consensus size: 176
82328268 GCCATCAGTC
* * * * *
82328278 TTATCTCCCTGAAGTTGCAGTGGAGGAGGTTGAAATTACCAATTCTTATCTCCTTGAAATTACAG
1 TTATCTCCCTGAAGTTGCAGCGGAGCAAGTTGAAATTACCAATTCTTACCTCCTTGAAATTACAA
* *
82328343 CGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATTATATTGAAACAAATCTAAGTCACAA
66 CGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATTACATTGAAACAAATCGAAGTCACAA
* *
82328408 TCCTTATCTCCTTGAAGTTGTAGTGGAGCAGGAAAATACACAAACT
131 TCCTCATCTCCCTGAAGTTGTAGTGGAGCAGGAAAATACACAAACT
* * * * *
82328454 TTATCTCTCTGAAGTTGCAGCGGAGCAAGTTGAAATTACCAATTCTTACCTCTTTTAAGTTCCAA
1 TTATCTCCCTGAAGTTGCAGCGGAGCAAGTTGAAATTACCAATTCTTACCTCCTTGAAATTACAA
* * * * **
82328519 TGGAGTAGATTGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGTAAATCGAAG-CTACA
66 CGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATTACATTGAAACAAATCGAAGTC-ACA
82328583 AGT-CTCATCTCCCTGAAGTT
130 A-TCCTCATCTCCCTGAAGTT
82328603 ACGGTGGGTG
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
175 1 0.01
176 125 0.98
177 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (176 bp):
TTATCTCCCTGAAGTTGCAGCGGAGCAAGTTGAAATTACCAATTCTTACCTCCTTGAAATTACAA
CGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATTACATTGAAACAAATCGAAGTCACAA
TCCTCATCTCCCTGAAGTTGTAGTGGAGCAGGAAAATACACAAACT
Found at i:82334273 original size:28 final size:28
Alignment explanation
Indices: 82334204--82334273 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
82334194 ACAATACACA
* * *
82334204 AATTAAAAATATAATAAAAAGTGATTAT
1 AATTAAAAATAAAATAAAAAGTAAATAT
* *
82334232 -ATTAAAATTGAAAATAAAATGTAAATAT
1 AATTAAAAAT-AAAATAAAAAGTAAATAT
82334260 AATTAAAAATAAAA
1 AATTAAAAATAAAA
82334274 AATAAAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
27 8 0.24
28 18 0.53
29 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (28 bp):
AATTAAAAATAAAATAAAAAGTAAATAT
Found at i:82338066 original size:21 final size:23
Alignment explanation
Indices: 82338041--82338088 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
82338031 TCAGGAATAT
*
82338041 TTTATGTATATT-TTTTCCTT-A
1 TTTATGCATATTATTTTCCTTGA
82338062 TTTATGCATATTATTTTCCTTGA
1 TTTATGCATATTATTTTCCTTGA
82338085 TTTA
1 TTTA
82338089 CTAGCTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 11 0.46
22 8 0.33
23 5 0.21
ACGTcount: A:0.21, C:0.10, G:0.06, T:0.62
Consensus pattern (23 bp):
TTTATGCATATTATTTTCCTTGA
Found at i:82338164 original size:52 final size:52
Alignment explanation
Indices: 82338103--82338207 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
82338093 CTAATTGGAG
*
82338103 CTCCTACTTGTATATAATCATCTCATTATTCTGTTATGATGTACAAGAAATA
1 CTCCTACTTGTATATAATCATCTCATTATTCTGTTATGATATACAAGAAATA
82338155 CTCCTACTTGTATATAATCATCTCATTATTCTGTTATGATATACAAGAAATA
1 CTCCTACTTGTATATAATCATCTCATTATTCTGTTATGATATACAAGAAATA
82338207 C
1 C
82338208 AATAACTTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (52 bp):
CTCCTACTTGTATATAATCATCTCATTATTCTGTTATGATATACAAGAAATA
Found at i:82338835 original size:39 final size:39
Alignment explanation
Indices: 82338781--82338858 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
82338771 TTGTACATGC
*
82338781 GGTTCAACAAAGGCACTAGCTGTGGAGAAAGAGAAAGAA
1 GGTTCAACAAAGGCACTAGCTGTGGAGAAAGAAAAAGAA
* *
82338820 GGTTCAGCAAAGGCACTAGCTGTGGGGAAAGAAAAAGAA
1 GGTTCAACAAAGGCACTAGCTGTGGAGAAAGAAAAAGAA
82338859 AAAGTGCATC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.42, C:0.13, G:0.32, T:0.13
Consensus pattern (39 bp):
GGTTCAACAAAGGCACTAGCTGTGGAGAAAGAAAAAGAA
Found at i:82340380 original size:16 final size:16
Alignment explanation
Indices: 82340359--82340391 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
82340349 AAGTTACATC
82340359 CCTACTCCTCTTTTAT
1 CCTACTCCTCTTTTAT
82340375 CCTACTCCTCTTTTAT
1 CCTACTCCTCTTTTAT
82340391 C
1 C
82340392 TAGACGCAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.39, G:0.00, T:0.48
Consensus pattern (16 bp):
CCTACTCCTCTTTTAT
Found at i:82348441 original size:46 final size:46
Alignment explanation
Indices: 82348374--82348590 Score: 310
Period size: 46 Copynumber: 4.7 Consensus size: 46
82348364 TGGCAACCTG
82348374 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
82348420 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
82348466 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAAATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
82348512 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
** * * *
82348558 TCAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
82348591 TCACGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 155 0.99
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:82348578 original size:138 final size:130
Alignment explanation
Indices: 82348325--82348590 Score: 363
Period size: 138 Copynumber: 2.0 Consensus size: 130
82348315 AGTGTGCTCT
*
82348325 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
* * ** * *
82348390 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACATGAAATCAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
82348455 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAAATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---AG--TAAG
82348520 ACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATCAGTAAGACCATAGTTGAAAGACAC
58 ACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATCAGTAAGACCATAGTTGAAAGACAC
*
82348584 TATGGCA
122 CATGGCA
82348591 TCACGTCAAA
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
130 48 0.41
133 2 0.02
136 1 0.01
137 1 0.01
138 66 0.56
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
TGAAAGATACCATGGCAACATGACATGAAATCAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:82348896 original size:23 final size:25
Alignment explanation
Indices: 82348851--82348897 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
82348841 AATAAATATA
*
82348851 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
82348876 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
82348898 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:82350892 original size:26 final size:26
Alignment explanation
Indices: 82350854--82350961 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82350844 ATGGTACAAT
*
82350854 TGATAATGTGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82350880 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82350906 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82350932 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82350958 TGAT
1 TGAT
82350962 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82357951 original size:26 final size:26
Alignment explanation
Indices: 82357922--82358003 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
82357912 TGGTACAAAT
*
82357922 TGATAATGTGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82357948 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82357974 TGATAATGGGCTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82358000 TGAT
1 TGAT
82358004 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82371345 original size:45 final size:44
Alignment explanation
Indices: 82371264--82371350 Score: 111
Period size: 45 Copynumber: 2.0 Consensus size: 44
82371254 GCTATATGCC
* * * *
82371264 TAAAATGAGTAAGACCATAGTTGAAAAATGATATGGCATCATAA
1 TAAAATGAGTAAAACCATAGCTGAAAAATCACATGGCATCATAA
* *
82371308 TAAAAGTGAGTAAAACCATAGCTGAAAGATCCCATGGCATCAT
1 TAAAA-TGAGTAAAACCATAGCTGAAAAATCACATGGCATCAT
82371351 GGGAATAATG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 5 0.14
45 31 0.86
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.23
Consensus pattern (44 bp):
TAAAATGAGTAAAACCATAGCTGAAAAATCACATGGCATCATAA
Found at i:82375590 original size:63 final size:63
Alignment explanation
Indices: 82375513--82375638 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
82375503 CTATTTATAT
82375513 GTTGTGGGATTAAATTCAATAAAATTGTCTTTAAATGAGGTTAATTTGGAATTATATAGATCA
1 GTTGTGGGATTAAATTCAATAAAATTGTCTTTAAATGAGGTTAATTTGGAATTATATAGATCA
* *
82375576 GTTGTGGGATTAAATTCAATAAAATTGTGTTTAAATGAGGTTATTTTGGAATTATATAGATCA
1 GTTGTGGGATTAAATTCAATAAAATTGTCTTTAAATGAGGTTAATTTGGAATTATATAGATCA
82375639 AGAACAAAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (63 bp):
GTTGTGGGATTAAATTCAATAAAATTGTCTTTAAATGAGGTTAATTTGGAATTATATAGATCA
Found at i:82376141 original size:35 final size:35
Alignment explanation
Indices: 82376102--82376219 Score: 164
Period size: 35 Copynumber: 3.3 Consensus size: 35
82376092 TATATGAGCC
* *
82376102 TTGTATAATAGGCCATATGTGATGATATATGGAAT
1 TTGTATATTCGGCCATATGTGATGATATATGGAAT
**
82376137 TTGTATATTCGGCCATATGTGATGATATATTTAAT
1 TTGTATATTCGGCCATATGTGATGATATATGGAAT
* * *
82376172 TTGTATATTCGGCCATATGTAATGATATATTGAACC
1 TTGTATATTCGGCCATATGTGATGATATATGGAA-T
82376208 TTGTATATTCGG
1 TTGTATATTCGG
82376220 TCTTATAGGT
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
35 63 0.84
36 12 0.16
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (35 bp):
TTGTATATTCGGCCATATGTGATGATATATGGAAT
Found at i:82377712 original size:38 final size:38
Alignment explanation
Indices: 82377623--82377759 Score: 141
Period size: 38 Copynumber: 3.6 Consensus size: 38
82377613 CGAGGTATAA
* * * * *
82377623 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCAGATATAATACCAGCACGAAGCCTGCAGGA-TTT
* * *
82377662 AAACTCAGATATAATACCAGCACTAGGCCTGC-GAGATTT
1 -AACCCAGATATAATACCAGCACGAAGCCTGCAG-GATTT
*
82377701 AACCCAGATATATTACCAGCACGAAGCCTGCAGGATTT
1 AACCCAGATATAATACCAGCACGAAGCCTGCAGGATTT
* *
82377739 AACCCGGATATAATTCCAGCA
1 AACCCAGATATAATACCAGCA
82377760 TATAGCCTGC
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
38 50 0.62
39 5 0.06
40 26 0.32
ACGTcount: A:0.36, C:0.28, G:0.17, T:0.19
Consensus pattern (38 bp):
AACCCAGATATAATACCAGCACGAAGCCTGCAGGATTT
Found at i:82377767 original size:38 final size:37
Alignment explanation
Indices: 82377669--82377771 Score: 120
Period size: 38 Copynumber: 2.7 Consensus size: 37
82377659 TTTAAACTCA
* * *
82377669 GATATAATACCAGCACTAGGCCTGCGAGATTTAACCCA
1 GATATAATTCCAGCACTAAGCCTGCG-GATTTAACCCG
*
82377707 GATAT-ATTACCAGCACGAAGCCTGCAGGATTTAACCCG
1 GATATAATT-CCAGCACTAAGCCTGC-GGATTTAACCCG
82377745 GATATAATTCCAGCA-TATAGCCTGCGG
1 GATATAATTCCAGCACTA-AGCCTGCGG
82377772 GTCTTTAAGC
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
37 5 0.09
38 47 0.84
39 4 0.07
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.22
Consensus pattern (37 bp):
GATATAATTCCAGCACTAAGCCTGCGGATTTAACCCG
Found at i:82387173 original size:38 final size:38
Alignment explanation
Indices: 82387057--82387213 Score: 122
Period size: 38 Copynumber: 4.0 Consensus size: 38
82387047 AAACCCAAAC
* * *
82387057 ATAACACCAGCACGAAGCCTACAGGACTTTCAACTCC-GAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AAC-CCGGAT
* * * **
82387097 ATAATACCAGCACTAGGCCTGCGAGATTTAACATGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
82387135 ATATTACCAGCACGAAGCCTGCGGGATTTGACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
82387173 ATAA-ACCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATA-CCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGAT
82387213 A
1 A
82387214 CACATCAATA
Statistics
Matches: 93, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
37 2 0.02
38 56 0.60
39 7 0.08
40 28 0.30
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:82388853 original size:23 final size:23
Alignment explanation
Indices: 82388823--82388870 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
82388813 TGTCCCCAAG
82388823 CACACGGGCT-TGTACTTTACCTC
1 CACACGGG-TGTGTACTTTACCTC
*
82388846 CACACGGGTGTGTGCTTTACCTC
1 CACACGGGTGTGTACTTTACCTC
82388869 CA
1 CA
82388871 AATAGGCGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 1 0.04
23 22 0.96
ACGTcount: A:0.17, C:0.33, G:0.21, T:0.29
Consensus pattern (23 bp):
CACACGGGTGTGTACTTTACCTC
Found at i:82388881 original size:23 final size:23
Alignment explanation
Indices: 82388837--82388882 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
82388827 CGGGCTTGTA
* * *
82388837 CTTTACCTCCACACGGGTGTGTG
1 CTTTACCTCCAAACAGGCGTGTG
*
82388860 CTTTACCTCCAAATAGGCGTGTG
1 CTTTACCTCCAAACAGGCGTGTG
82388883 AGGTGTAACC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.17, C:0.28, G:0.24, T:0.30
Consensus pattern (23 bp):
CTTTACCTCCAAACAGGCGTGTG
Found at i:82392171 original size:49 final size:49
Alignment explanation
Indices: 82392092--82393284 Score: 2117
Period size: 49 Copynumber: 24.6 Consensus size: 49
82392082 TATTTGAATA
*
82392092 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392139 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392188 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392237 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392286 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392335 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392384 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392433 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392482 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392531 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392580 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392629 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392678 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392727 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392776 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392825 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392874 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392923 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82392972 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
82393021 AATGTGAAAATG--TATATATGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
82393068 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
82393117 AATGTGAATA-TGTGTAT-T-TGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
82393164 AATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
82393211 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
82393258 GATGTGGAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
82393285 CCCCGAAGGG
Statistics
Matches: 1123, Mismatches: 13, Indels: 20
0.97 0.01 0.02
Matches are distributed among these distances:
45 2 0.00
46 2 0.00
47 188 0.17
48 2 0.00
49 928 0.83
50 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:82393209 original size:22 final size:22
Alignment explanation
Indices: 82393182--82393256 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
82393172 CATGTGTATG
82393182 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
82393204 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
82393229 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
82393251 TGTGAT
1 TGTGAT
82393257 GGATGTGGAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 14 0.37
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:82398203 original size:40 final size:40
Alignment explanation
Indices: 82398144--82398355 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
82398134 CATTTGAATG
* * *
82398144 ATATCCAGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
82398184 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
82398224 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * * *
82398264 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
82398304 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
82398344 ATATCC-GGCTAA
1 ATATCCGGGCTAA
82398356 ATTCCGAAGA
Statistics
Matches: 139, Mismatches: 31, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
39 8 0.06
40 129 0.93
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:82398292 original size:80 final size:79
Alignment explanation
Indices: 82398151--82398364 Score: 304
Period size: 80 Copynumber: 2.7 Consensus size: 79
82398141 ATGATATCCA
* *
82398151 GGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 GGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCC-GGCTAAGATCCGAAGGCATTTGTGC
* *
82398216 GAGTTGCTATACCCG
65 GAGTTACTAAACCCG
*
82398231 GGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTGTGC
1 GGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGG-CTAAGATCCGAAGGCATTTGTGC
*
82398296 GAGTTACTAAATCCG
65 GAGTTACTAAACCCG
* * * *
82398311 GGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCCGGCTAA-ATTCCGAAG
1 GGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGA-TCCGAAG
82398365 AAACTTGGGT
Statistics
Matches: 121, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 13 0.11
80 107 0.88
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
GGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGATCCGAAGGCATTTGTGCG
AGTTACTAAACCCG
Found at i:82407912 original size:33 final size:32
Alignment explanation
Indices: 82407819--82407913 Score: 93
Period size: 33 Copynumber: 2.9 Consensus size: 32
82407809 TCAAGTCCAT
* **
82407819 TGGGCCTAAGCCCTATTCAGATAACAGTGGTAC
1 TGGGCCTAAGCCCTTTTCAGATAACAGT-AAAC
* * *
82407852 TAGGCCGAAGCCCTTTTCA-AAATACAGTAAAC
1 TGGGCCTAAGCCCTTTTCAGATA-ACAGTAAAC
*
82407884 TGGGCCTTAGCCCCTTTTCAGATAACAGTA
1 TGGGCCTAAG-CCCTTTTCAGATAACAGTA
82407914 TGGCCTATAG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
32 11 0.22
33 36 0.73
34 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (32 bp):
TGGGCCTAAGCCCTTTTCAGATAACAGTAAAC
Found at i:82413513 original size:28 final size:28
Alignment explanation
Indices: 82413408--82413565 Score: 105
Period size: 28 Copynumber: 5.7 Consensus size: 28
82413398 CTGTACAATC
*
82413408 GATGTCTT-GCACGCTAAGTG-CTATATCG
1 GATGT-TTCGCACACTAAGTGTC-ATATCG
* *
82413436 GATGTTTCGCACACTAAGTGCCATCCTC-
1 GATGTTTCGCACACTAAGTGTCAT-ATCG
** * *
82413464 GATACTTCTCACACTAAGTGTCATTTCG
1 GATGTTTCGCACACTAAGTGTCATATCG
82413492 GATGTTTCGCACACTAAGTGTCATCATC-
1 GATGTTTCGCACACTAAGTGTCAT-ATCG
* ** ** *
82413520 AATACTTCATACACT--GTGTCATTTCG
1 GATGTTTCGCACACTAAGTGTCATATCG
82413546 GATGTCTT-GCACACTAAGTG
1 GATGT-TTCGCACACTAAGTG
82413566 CCATCCTCAA
Statistics
Matches: 99, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
25 2 0.02
26 14 0.14
27 6 0.06
28 72 0.73
29 5 0.05
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (28 bp):
GATGTTTCGCACACTAAGTGTCATATCG
Found at i:82413563 original size:54 final size:55
Alignment explanation
Indices: 82413433--82413589 Score: 230
Period size: 54 Copynumber: 2.9 Consensus size: 55
82413423 AAGTGCTATA
*
82413433 TCGGATGTTTCGCACACTAAGTGCCATCCTCGATACTTCTCACACTAAGTGTCATT
1 TCGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTCTCACACT-AGTGTCATT
* *
82413489 TCGGATGTTTCGCACACTAAGTGTCATCATCAATACTTCAT-ACACT-GTGTCATT
1 TCGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTC-TCACACTAGTGTCATT
*
82413543 TCGGATGTCTT-GCACACTAAGTGCCATCCTCAATACTTCGCACACTA
1 TCGGATGT-TTCGCACACTAAGTGCCATCCTCAATACTTCTCACACTA
82413590 AGTGCCGTTC
Statistics
Matches: 91, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
54 47 0.52
55 2 0.02
56 41 0.45
57 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (55 bp):
TCGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTCTCACACTAGTGTCATT
Found at i:82413594 original size:28 final size:28
Alignment explanation
Indices: 82413441--82413595 Score: 122
Period size: 28 Copynumber: 5.6 Consensus size: 28
82413431 TATCGGATGT
82413441 TTCGCACACTAAGTGCCATCCTCGATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
* * * **
82413469 TTCTCACACTAAGTGTCAT-TTCGGATGT
1 TTCGCACACTAAGTGCCATCCTC-GATAC
* * *
82413497 TTCGCACACTAAGTGTCATCATCAATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
** * * *
82413525 TTCATACACT--GTGTCAT-TTCGGATGTC
1 TTCGCACACTAAGTGCCATCCTC-GAT-AC
*
82413552 TT-GCACACTAAGTGCCATCCTCAATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
82413579 TTCGCACACTAAGTGCC
1 TTCGCACACTAAGTGCC
82413596 GTTCGTTTGG
Statistics
Matches: 98, Mismatches: 21, Indels: 16
0.73 0.16 0.12
Matches are distributed among these distances:
25 2 0.02
26 14 0.14
27 8 0.08
28 70 0.71
29 4 0.04
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:82420032 original size:18 final size:17
Alignment explanation
Indices: 82420009--82420044 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
82419999 TAAACACCTA
*
82420009 TTATTTTTACTTTTTATT
1 TTATTTTTA-TCTTTATT
82420027 TTATTTTTATCTTTATT
1 TTATTTTTATCTTTATT
82420044 T
1 T
82420045 ATATGTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78
Consensus pattern (17 bp):
TTATTTTTATCTTTATT
Found at i:82424901 original size:21 final size:20
Alignment explanation
Indices: 82424875--82424940 Score: 73
Period size: 21 Copynumber: 3.3 Consensus size: 20
82424865 AACCTCTTGA
82424875 TACGATAGAAATAGAATGATT
1 TACGATAGAAA-AGAATGATT
*
82424896 TACGAT-G-AACGAATGATT
1 TACGATAGAAAAGAATGATT
* *
82424914 TACAATAGAAACAAAATGATT
1 TACGATAGAAA-AGAATGATT
82424935 TACGAT
1 TACGAT
82424941 GAACGAATGT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
18 13 0.35
19 3 0.08
20 3 0.08
21 18 0.49
ACGTcount: A:0.47, C:0.09, G:0.17, T:0.27
Consensus pattern (20 bp):
TACGATAGAAAAGAATGATT
Found at i:82424911 original size:18 final size:18
Alignment explanation
Indices: 82424888--82424949 Score: 79
Period size: 18 Copynumber: 3.3 Consensus size: 18
82424878 GATAGAAATA
82424888 GAATGATTTACGATGAAC
1 GAATGATTTACGATGAAC
*
82424906 GAATGATTTACAATAGAAAC
1 GAATGATTTACGAT-G-AAC
*
82424926 AAAATGATTTACGATGAAC
1 -GAATGATTTACGATGAAC
82424945 GAATG
1 GAATG
82424950 TTGCAAATCG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
18 17 0.46
19 4 0.11
20 4 0.11
21 12 0.32
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.26
Consensus pattern (18 bp):
GAATGATTTACGATGAAC
Found at i:82426467 original size:8 final size:8
Alignment explanation
Indices: 82426456--82426486 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
82426446 TAATTCTTTA
82426456 TTATTTTC
1 TTATTTTC
82426464 TTATTTTC
1 TTATTTTC
82426472 TTATTTTC
1 TTATTTTC
82426480 TTATTTT
1 TTATTTT
82426487 TTTAATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (8 bp):
TTATTTTC
Found at i:82426522 original size:15 final size:13
Alignment explanation
Indices: 82426492--82426543 Score: 52
Period size: 15 Copynumber: 3.8 Consensus size: 13
82426482 ATTTTTTTAA
*
82426492 TTATTTA-TTAAT
1 TTATTTATTTCAT
82426504 TTATTCTATTTCTAT
1 TTATT-TATTTC-AT
82426519 TTATGTTTATTTCAT
1 TTA--TTTATTTCAT
82426534 TTATTTATTT
1 TTATTTATTT
82426544 ATCCCATTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
12 5 0.15
13 9 0.26
14 2 0.06
15 10 0.29
16 6 0.18
17 2 0.06
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (13 bp):
TTATTTATTTCAT
Found at i:82426541 original size:4 final size:4
Alignment explanation
Indices: 82426452--82426545 Score: 52
Period size: 4 Copynumber: 22.2 Consensus size: 4
82426442 TTTTTAATTC
* *
82426452 TTTA -TTA TTT- TCTTA TTT- TCTTA TTT- TCTTA TTTT TTTA ATTA TTTA
1 TTTA TTTA TTTA T-TTA TTTA T-TTA TTTA T-TTA TTTA TTTA TTTA TTTA
*
82426499 TTAA TTTA TTCTA TTTCTA TTTA TGTTTA TTTCA TTTA TTTA TTTA T
1 TTTA TTTA TT-TA -TT-TA TTTA --TTTA TTT-A TTTA TTTA TTTA T
82426546 CCCATTTTAG
Statistics
Matches: 72, Mismatches: 6, Indels: 24
0.71 0.06 0.24
Matches are distributed among these distances:
3 6 0.08
4 46 0.64
5 11 0.15
6 9 0.12
ACGTcount: A:0.21, C:0.06, G:0.01, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:82432612 original size:10 final size:10
Alignment explanation
Indices: 82432597--82432623 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
82432587 ATGAATGATG
82432597 GAATTTGCTT
1 GAATTTGCTT
82432607 GAATTTGCTT
1 GAATTTGCTT
82432617 GAATTTG
1 GAATTTG
82432624 AATGCTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.07, G:0.22, T:0.48
Consensus pattern (10 bp):
GAATTTGCTT
Found at i:82433110 original size:18 final size:18
Alignment explanation
Indices: 82433087--82433121 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82433077 CACCTTGGAA
82433087 AAAACTTTAAAATTTTGC
1 AAAACTTTAAAATTTTGC
*
82433105 AAAACTTTAAAGTTTTG
1 AAAACTTTAAAATTTTG
82433122 GGCCTCGAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (18 bp):
AAAACTTTAAAATTTTGC
Found at i:82436813 original size:32 final size:32
Alignment explanation
Indices: 82436772--82436834 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
82436762 CTTTAAAAGC
*
82436772 TTAGTAAGCCATATACAAATAAAGTTATCATT
1 TTAGTAAGCCATATACAAATAAAGTCATCATT
82436804 TTAGTAAGCCATATACAAATAAAGTCATCAT
1 TTAGTAAGCCATATACAAATAAAGTCATCAT
82436835 ATGACTATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (32 bp):
TTAGTAAGCCATATACAAATAAAGTCATCATT
Found at i:82437151 original size:43 final size:43
Alignment explanation
Indices: 82437086--82437247 Score: 193
Period size: 43 Copynumber: 3.8 Consensus size: 43
82437076 AGCTCGTACA
* * *
82437086 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCAT-ATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCATAATA-CG
* * * * *
82437128 ATGCCACTGTCCCAGAAAGGGTCTTACATGAAATAATAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCATAATACG
* * *
82437171 ATGCCAATGTCTCAGACATGGTCTTACACGTAATCATAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCATAATACG
*
82437214 ATGCCAATGTCCCATACATGGTCTTACATGTAAT
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAT
82437248 ACATCTCGAT
Statistics
Matches: 100, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
42 5 0.05
43 92 0.92
44 3 0.03
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCATAATACG
Found at i:82439401 original size:77 final size:78
Alignment explanation
Indices: 82439314--82439464 Score: 286
Period size: 77 Copynumber: 1.9 Consensus size: 78
82439304 GTGACACACC
*
82439314 CTATTAATGCCTCCGACGATGAGGATCATTGATTTAATTTGTTTTCTTTTTACTTTTATTTTATT
1 CTATTAATGCCTCCGACGATGAGGATCATTGATTAAATTTGTTTTCTTTTTACTTTTATTTTATT
82439379 TT-TTTATGCTTA
66 TTATTTATGCTTA
82439391 CTATTAATGCCTCCGACGATGAGGATCATTGATTAAATTTGTTTTCTTTTTACTTTTATTTTATT
1 CTATTAATGCCTCCGACGATGAGGATCATTGATTAAATTTGTTTTCTTTTTACTTTTATTTTATT
82439456 TTATTTATG
66 TTATTTATG
82439465 TTTATGTTTA
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
77 66 0.92
78 6 0.08
ACGTcount: A:0.22, C:0.13, G:0.12, T:0.54
Consensus pattern (78 bp):
CTATTAATGCCTCCGACGATGAGGATCATTGATTAAATTTGTTTTCTTTTTACTTTTATTTTATT
TTATTTATGCTTA
Found at i:82439478 original size:4 final size:5
Alignment explanation
Indices: 82439438--82439510 Score: 51
Period size: 6 Copynumber: 13.8 Consensus size: 5
82439428 TTTGTTTTCT
82439438 TTTTA CTTTTA TTTTA TTTTA -TTTA TGTTTA TGTTTA TTTATA TGTTTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA T-TTTA T-TTTA TTT-TA T-TTTA
* * *
82439487 -GTTG TTTTG TTTTA TTTTTA TTTT
1 TTTTA TTTTA TTTTA -TTTTA TTTT
82439511 CTTATACTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
4 6 0.11
5 23 0.40
6 26 0.46
7 2 0.04
ACGTcount: A:0.16, C:0.01, G:0.08, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:82442430 original size:50 final size:49
Alignment explanation
Indices: 82442312--82442441 Score: 188
Period size: 50 Copynumber: 2.6 Consensus size: 49
82442302 CTGGTATGCA
* * * **
82442312 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTAATACACG
* *
82442361 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACAATCTAATACACG
82442411 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
82442442 TCACAGTTTT
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
49 31 0.42
50 42 0.58
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTAATACACG
Found at i:82442485 original size:101 final size:99
Alignment explanation
Indices: 82442312--82442498 Score: 266
Period size: 101 Copynumber: 1.9 Consensus size: 99
82442302 CTGGTATGCA
* * *
82442312 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATAATCGGGTACACATAGTAGCCTGCACTTA
*
82442377 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * ** *
82442411 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAATAATCGGGTACACATAGTAGCCTGCACT
*
82442476 TAGTACTACACATGCGACCTCAC
64 TAGTACTACACACGCGACCTCAC
82442499 AATAGATCAT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
99 29 0.38
100 1 0.01
101 46 0.61
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATAATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:82452740 original size:48 final size:46
Alignment explanation
Indices: 82452669--82452883 Score: 175
Period size: 46 Copynumber: 4.6 Consensus size: 46
82452659 ACGCCGACGC
* * * *
82452669 CATGTCCCAGACCA-GTCTTACACTAGCTTGTATATCGCGAGGTTTATG
1 CATGTCCCAGA-CATGTCTTACACTAGC-TCT-CATCGCGAGGCTGATG
* * * * * *
82452717 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGACG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCGCGAGGCTGATG
* * * * *
82452763 CATGTCCTAGACATGTCTTACACTGGCT-TAAATATCTCGAGGCGGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT---CATCGCGAGGCTGATG
* * *
82452811 CATGTCCCAAACATGTCTTACACTGGCTCTCAT-GCTGTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCGC-GAGGCTGATG
*
82452857 CATGTCCTAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
82452884 ACACATATCA
Statistics
Matches: 134, Mismatches: 27, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
45 2 0.01
46 67 0.50
47 4 0.03
48 60 0.45
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCGCGAGGCTGATG
Found at i:82452830 original size:94 final size:94
Alignment explanation
Indices: 82452661--82452883 Score: 263
Period size: 94 Copynumber: 2.4 Consensus size: 94
82452651 GGGTTAAGAC
* ** ***
82452661 GCCGACGCCATGTCCCAGACCA-GTCTTACACTAGCTTGTATATCGCGAGGTTTATGCATGTCCC
1 GCCGACG-CATGTCCTAGA-CATGTCTTACACTAGCTTAAATATCGCGAGGCGGATGCATGTCCC
* *
82452725 AGACATGTCTTACACTAGCTCTCGT-CTCAAT-
64 AAACATGTCTTACACTAGCTCTCATGCT--ATG
* *
82452756 GCCGACGCATGTCCTAGACATGTCTTACACTGGCTTAAATATCTCGAGGCGGATGCATGTCCCAA
1 GCCGACGCATGTCCTAGACATGTCTTACACTAGCTTAAATATCGCGAGGCGGATGCATGTCCCAA
* *
82452821 ACATGTCTTACACTGGCTCTCATGCTGTG
66 ACATGTCTTACACTAGCTCTCATGCTATG
* *
82452850 GCTGATGCATGTCCTAGACATGTCTTACACTAGC
1 GCCGACGCATGTCCTAGACATGTCTTACACTAGC
82452884 ACACATATCA
Statistics
Matches: 110, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
93 3 0.03
94 98 0.89
95 9 0.08
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (94 bp):
GCCGACGCATGTCCTAGACATGTCTTACACTAGCTTAAATATCGCGAGGCGGATGCATGTCCCAA
ACATGTCTTACACTAGCTCTCATGCTATG
Found at i:82459700 original size:55 final size:54
Alignment explanation
Indices: 82459543--82459724 Score: 294
Period size: 54 Copynumber: 3.4 Consensus size: 54
82459533 GATGATGAAA
* *
82459543 AAAGGAAAAGAAAGAAAAAAAAA-AGCTCTCATGTTGTTCTTGGCTGAATAGAAG
1 AAAGAAAAAG-AAGAAAAAAAAAGAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
*
82459597 AAAGAAAAAGAAGAAAAAAAAAGAGCTCTCATGTTGTTCTTGGTCGAATAGAAG
1 AAAGAAAAAGAAGAAAAAAAAAGAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
*
82459651 AAAGAAAAAGAAGAAGAAAAAAAGAGCTCCCATGTTGTTCTTGGCCGAATAGAAG
1 AAAGAAAAAGAAGAA-AAAAAAAGAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
*
82459706 AAAGAAAAAGAAGGAAAAA
1 AAAGAAAAAGAAGAAAAAA
82459725 GAGCTTTGAG
Statistics
Matches: 120, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
53 12 0.10
54 57 0.47
55 51 0.43
ACGTcount: A:0.51, C:0.09, G:0.23, T:0.17
Consensus pattern (54 bp):
AAAGAAAAAGAAGAAAAAAAAAGAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
Found at i:82461024 original size:40 final size:40
Alignment explanation
Indices: 82460969--82461185 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
82460959 CGGATGATAA
* * *
82460969 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
82461009 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82461049 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
82461089 CTGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82461129 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
82461168 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82461186 TACTTGGCTT
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
38 15 0.10
39 14 0.09
40 126 0.81
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82464203 original size:47 final size:47
Alignment explanation
Indices: 82464144--82464490 Score: 550
Period size: 47 Copynumber: 7.4 Consensus size: 47
82464134 GATGTACAAG
* *
82464144 GTGTGTATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
82464191 GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
*
82464238 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
* * *
82464285 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
*
82464332 GTGTATATATGTGATAAGGTCAAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
* * * * * *
82464379 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
* *
82464426 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
*
82464473 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
82464491 TCCCGAAGGG
Statistics
Matches: 278, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 278 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
Found at i:82464227 original size:22 final size:22
Alignment explanation
Indices: 82464152--82464274 Score: 66
Period size: 22 Copynumber: 5.3 Consensus size: 22
82464142 AGGTGTGTAT
*
82464152 ATGTGATAAGGCCAAATGGCCG
1 ATGTGATAAGGCCAAATGGCCA
* ** ***
82464174 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCAAA-TGGCCA
82464198 TATGTGATAAGGCCAAATGGCCA
1 -ATGTGATAAGGCCAAATGGCCA
* ** ***
82464221 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCAAA-TGGCCA
*
82464245 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCAAATGGCCA
82464268 ATGTGAT
1 ATGTGAT
82464275 GAATGTGAAA
Statistics
Matches: 69, Mismatches: 26, Indels: 12
0.64 0.24 0.11
Matches are distributed among these distances:
22 21 0.30
23 18 0.26
24 16 0.23
25 14 0.20
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCAAATGGCCA
Found at i:82466141 original size:3 final size:3
Alignment explanation
Indices: 82466125--82466178 Score: 53
Period size: 3 Copynumber: 18.7 Consensus size: 3
82466115 TTTCTGACAA
*
82466125 TTC TT- TTC -TC TTC TTC TT- TTC TTC TTTC TTC ATC TAT- TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC T-TC TTC TTC
82466168 TTC TTC TTC TT
1 TTC TTC TTC TT
82466179 TTCCTCTATA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
2 7 0.16
3 32 0.74
4 4 0.09
ACGTcount: A:0.04, C:0.28, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:82467268 original size:27 final size:27
Alignment explanation
Indices: 82467238--82467295 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
82467228 TACTAAAGTA
*
82467238 CCCTAAGTATG-AAAATTACCATTATAC
1 CCCTAAG-ATGCAAAATGACCATTATAC
*
82467265 CCCT-AGGTGCAAAATGACCATTATAC
1 CCCTAAGATGCAAAATGACCATTATAC
82467291 CCCTA
1 CCCTA
82467296 GGGTTGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 2 0.07
26 21 0.78
27 4 0.15
ACGTcount: A:0.36, C:0.28, G:0.10, T:0.26
Consensus pattern (27 bp):
CCCTAAGATGCAAAATGACCATTATAC
Found at i:82467441 original size:28 final size:28
Alignment explanation
Indices: 82467399--82467514 Score: 164
Period size: 28 Copynumber: 4.2 Consensus size: 28
82467389 GGAGGAAGCG
*
82467399 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCCCTGCCACAAATATCTGT
82467427 TTCTGGTGGCCCTGCCACAAATATCTGT
1 TTCTGGTGGCCCTGCCACAAATATCTGT
*
82467455 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCCCTGCCACAAATATCTGT
* * * *
82467483 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCCCTGCCACAAATATCTGT
82467509 TTCTGG
1 TTCTGG
82467515 CAGCCATGCT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 5 0.06
27 7 0.09
28 68 0.85
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCCCTGCCACAAATATCTGT
Found at i:82479675 original size:28 final size:28
Alignment explanation
Indices: 82479644--82479698 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
82479634 AATTTATGAG
82479644 ACATTTGCTATATTAATTAAAATTAAGA
1 ACATTTGCTATATTAATTAAAATTAAGA
82479672 ACATTTGCTATATTAATTAAAATTAAG
1 ACATTTGCTATATTAATTAAAATTAAG
82479699 TACAAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (28 bp):
ACATTTGCTATATTAATTAAAATTAAGA
Found at i:82480483 original size:21 final size:19
Alignment explanation
Indices: 82480449--82480491 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
82480439 TTAAATTTGA
82480449 AAATTATAAAAAAATAATTAT
1 AAATTATAAAAAAAT--TTAT
**
82480470 AAATTATATTAAAATTTAT
1 AAATTATAAAAAAATTTAT
82480489 AAA
1 AAA
82480492 AGGCTCATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
21 13 0.65
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AAATTATAAAAAAATTTAT
Found at i:82495012 original size:108 final size:108
Alignment explanation
Indices: 82494817--82495013 Score: 270
Period size: 108 Copynumber: 1.8 Consensus size: 108
82494807 TTTTGGTGGT
* * *
82494817 CAAACCAATCCTTTGACTCCTCAAATTCAGCACCAGCAGAACTTTCACGCGAATGGAACTGCAGC
1 CAAACCAATCCTTGGACTCCTCAAATTCAGCACCAACAGAACTTTCACGCGAATGGAACTGCACC
* **
82494882 AAACGTGGGATCACCTGGATATGACATACATGGTCTGACTGGA
66 AAACATGGGATCACCTCAATATGACATACATGGTCTGACTGGA
* * * * * *
82494925 CAAACCGATCCTTGGACTTCTCAATTTCAGCAGCAACAGAA-TTTCCATGTGAATGGAACTGCAC
1 CAAACCAATCCTTGGACTCCTCAAATTCAGCACCAACAGAACTTT-CACGCGAATGGAACTGCAC
82494989 CAAACATGGGATCACCTCAATATGA
65 CAAACATGGGATCACCTCAATATGA
82495014 GAAGTCATAT
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
107 3 0.04
108 73 0.96
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.22
Consensus pattern (108 bp):
CAAACCAATCCTTGGACTCCTCAAATTCAGCACCAACAGAACTTTCACGCGAATGGAACTGCACC
AAACATGGGATCACCTCAATATGACATACATGGTCTGACTGGA
Found at i:82495427 original size:34 final size:34
Alignment explanation
Indices: 82495384--82495451 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
82495374 TTATTAAGTT
82495384 TATAATGATTTGCTTCTCAAGTTAGTATAATTGC
1 TATAATGATTTGCTTCTCAAGTTAGTATAATTGC
*
82495418 TATAATGATTTGCTTCTCAAGTTGGTATAATTGC
1 TATAATGATTTGCTTCTCAAGTTAGTATAATTGC
82495452 ATAGATATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (34 bp):
TATAATGATTTGCTTCTCAAGTTAGTATAATTGC
Found at i:82499359 original size:25 final size:28
Alignment explanation
Indices: 82499309--82499359 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
82499299 TACAATGACT
*
82499309 TATGACATATTTTAATCTAGTATAAAAA
1 TATGACATATTTCAATCTAGTATAAAAA
82499337 TATGA-ATATTTCAAT-TA-TATAAA
1 TATGACATATTTCAATCTAGTATAAA
82499360 TATGAGTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 6 0.27
26 2 0.09
27 9 0.41
28 5 0.23
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (28 bp):
TATGACATATTTCAATCTAGTATAAAAA
Found at i:82499812 original size:17 final size:18
Alignment explanation
Indices: 82499786--82499820 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
82499776 CCAAACACTA
*
82499786 AAAAATATTAATTTATTT
1 AAAAATATTAAATTATTT
82499804 AAAAA-ATTAAATTATTT
1 AAAAATATTAAATTATTT
82499821 TTTATAAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AAAAATATTAAATTATTT
Found at i:82500284 original size:17 final size:17
Alignment explanation
Indices: 82500262--82500313 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
82500252 ATGGAAACAT
* *
82500262 AATCTTCAAGGATATGC
1 AATCTTAAAAGATATGC
*
82500279 AATCTTAGATATGATATGC
1 AATCTTA-A-AAGATATGC
82500298 AATCTTAAAAGATATG
1 AATCTTAAAAGATATG
82500314 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (17 bp):
AATCTTAAAAGATATGC
Found at i:82500332 original size:22 final size:22
Alignment explanation
Indices: 82500272--82500315 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 22
82500262 AATCTTCAAG
82500272 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAAAAGATAT
82500291 GATATGCAATCTTAAAAGATAT
1 GATATGCAATCTTAAAAGATAT
82500313 GAT
1 GAT
82500316 TTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 13 0.59
22 9 0.41
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (22 bp):
GATATGCAATCTTAAAAGATAT
Found at i:82500577 original size:23 final size:23
Alignment explanation
Indices: 82500533--82500577 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
82500523 TCTTATTTTG
* *
82500533 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
*
82500556 TTGATTTGTATATTATTGATTT
1 TTGATTTGTATATAATTGATTT
82500578 CAAATCTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:82501058 original size:19 final size:19
Alignment explanation
Indices: 82501034--82501075 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
82501024 TAGCTTTTAA
* *
82501034 TTTTTTTCAGCTCCCTAAT
1 TTTTTTTCAGCTACCAAAT
82501053 TTTTTTTCAGCTACCAAAT
1 TTTTTTTCAGCTACCAAAT
82501072 TTTT
1 TTTT
82501076 ACAACTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.19, C:0.21, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTTTTTCAGCTACCAAAT
Found at i:82501202 original size:21 final size:22
Alignment explanation
Indices: 82501178--82501220 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
82501168 ATTTATCACA
82501178 ATTT-TCTACTCTCTGTAGCAC
1 ATTTATCTACTCTCTGTAGCAC
*
82501199 ATTTAGTCTACTCTCTTTAGCA
1 ATTTA-TCTACTCTCTGTAGCA
82501221 TGCTTTTGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
23 15 0.79
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (22 bp):
ATTTATCTACTCTCTGTAGCAC
Found at i:82502443 original size:12 final size:12
Alignment explanation
Indices: 82502418--82502531 Score: 55
Period size: 12 Copynumber: 9.8 Consensus size: 12
82502408 TTTATCAAGA
82502418 TAAATATTAAAT
1 TAAATATTAAAT
82502430 TAAAT-TTAATAT
1 TAAATATTAA-AT
* *
82502442 TAAGATAATCAAT
1 TAA-ATATTAAAT
*
82502455 TTAATATTAAAT
1 TAAATATTAAAT
82502467 T-AATA--AAA-
1 TAAATATTAAAT
* *
82502475 AAAACTATTAAAA
1 TAAA-TATTAAAT
* *
82502488 TAAGTGTT-AAT
1 TAAATATTAAAT
82502499 TAAAT-TTAATAT
1 TAAATATTAA-AT
*
82502511 TAAACTATTAAAA
1 TAAA-TATTAAAT
82502524 T-AATATTA
1 TAAATATTA
82502532 TTTTTGGAAT
Statistics
Matches: 78, Mismatches: 12, Indels: 25
0.68 0.10 0.22
Matches are distributed among these distances:
9 5 0.06
10 4 0.05
11 20 0.26
12 32 0.41
13 11 0.14
14 6 0.08
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (12 bp):
TAAATATTAAAT
Found at i:82502470 original size:20 final size:19
Alignment explanation
Indices: 82502420--82502472 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
82502410 TATCAAGATA
82502420 AATATTAAATT-A-AATTT
1 AATATTAAATTAATAATTT
82502437 AATATTAAGA-TAATCAATTT
1 AATATTAA-ATTAAT-AATTT
82502457 AATATTAAATTAATAA
1 AATATTAAATTAATAA
82502473 AAAAAACTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 9 0.29
18 2 0.06
19 3 0.10
20 17 0.55
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (19 bp):
AATATTAAATTAATAATTT
Found at i:82502500 original size:69 final size:69
Alignment explanation
Indices: 82502378--82502513 Score: 175
Period size: 69 Copynumber: 2.0 Consensus size: 69
82502368 TAATTAAACT
* * * ** *
82502378 TAATCAATTTAATTTTAAATTAATATAATATTTATCAAGATAAATATTAAATTAAATTTAATATT
1 TAATCAATTTAATATTAAATTAATAAAAAAACTATCAAAATAAATATTAAATTAAATTTAATATT
82502443 AAGA
66 AAGA
* * *
82502447 TAATCAATTTAATATTAAATTAATAAAAAAAACTATTAAAATAAGTGTT-AATTAAATTTAATAT
1 TAATCAATTTAATATTAAATTAAT-AAAAAAACTATCAAAATAAATATTAAATTAAATTTAATAT
82502511 TAA
65 TAA
82502514 ACTATTAAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
69 41 0.72
70 16 0.28
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (69 bp):
TAATCAATTTAATATTAAATTAATAAAAAAACTATCAAAATAAATATTAAATTAAATTTAATATT
AAGA
Found at i:82504141 original size:14 final size:14
Alignment explanation
Indices: 82504106--82504141 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
82504096 TCTATGCATG
*
82504106 CATAATATAAAAGA
1 CATAATACAAAAGA
82504120 CATAAATACAAAAGA
1 CAT-AATACAAAAGA
82504135 CATAATA
1 CATAATA
82504142 GTGAAATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.64, C:0.11, G:0.06, T:0.19
Consensus pattern (14 bp):
CATAATACAAAAGA
Found at i:82507903 original size:24 final size:24
Alignment explanation
Indices: 82507875--82507980 Score: 108
Period size: 23 Copynumber: 4.5 Consensus size: 24
82507865 TCAGCTTGTA
*
82507875 AGAGCTTACTATTTTTAGCTCATT
1 AGAGCTTACTATTTTCAGCTCATT
* * * *
82507899 GGAGCTTACT-GTTTCAGCTTATA
1 AGAGCTTACTATTTTCAGCTCATT
* *
82507922 AAAGCTTACTATTTTCAGCTCATC
1 AGAGCTTACTATTTTCAGCTCATT
** *
82507946 AGAGCTTAC-CGTTTCAGCTCAAT
1 AGAGCTTACTATTTTCAGCTCATT
82507969 AGAGCTTACTAT
1 AGAGCTTACTAT
82507981 CCATCAGCTC
Statistics
Matches: 63, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
23 36 0.57
24 27 0.43
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (24 bp):
AGAGCTTACTATTTTCAGCTCATT
Found at i:82507930 original size:47 final size:47
Alignment explanation
Indices: 82507850--82507964 Score: 149
Period size: 47 Copynumber: 2.4 Consensus size: 47
82507840 CAGCTCAATT
* * * **
82507850 GAGCTTACCGATATATCAGCTTGTAAGAGCTTACTATTTTTAGCTCATTG
1 GAGCTTACCG-T-T-TCAGCTTATAAAAGCTTACTATTTTCAGCTCATCA
*
82507900 GAGCTTACTGTTTCAGCTTATAAAAGCTTACTATTTTCAGCTCATCA
1 GAGCTTACCGTTTCAGCTTATAAAAGCTTACTATTTTCAGCTCATCA
82507947 GAGCTTACCGTTTCAGCT
1 GAGCTTACCGTTTCAGCT
82507965 CAATAGAGCT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
47 47 0.81
48 1 0.02
49 1 0.02
50 9 0.16
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (47 bp):
GAGCTTACCGTTTCAGCTTATAAAAGCTTACTATTTTCAGCTCATCA
Found at i:82507975 original size:47 final size:47
Alignment explanation
Indices: 82507850--82507980 Score: 147
Period size: 47 Copynumber: 2.7 Consensus size: 47
82507840 CAGCTCAATT
** * **
82507850 GAGCTTACCGATATATCAGCTTGTAAGAGCTTACTATTTTTAGCTCATTG
1 GAGCTTACCG-T-T-TCAGCTAATAAGAGCTTACTATTTTCAGCTCATCA
* * *
82507900 GAGCTTACTGTTTCAGCTTATAAAAGCTTACTATTTTCAGCTCATCA
1 GAGCTTACCGTTTCAGCTAATAAGAGCTTACTATTTTCAGCTCATCA
82507947 GAGCTTACCGTTTCAGCTCAAT-AGAGCTTACTAT
1 GAGCTTACCGTTTCAGCT-AATAAGAGCTTACTAT
82507981 CCATCAGCTC
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
47 58 0.82
48 3 0.04
49 1 0.01
50 9 0.13
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.37
Consensus pattern (47 bp):
GAGCTTACCGTTTCAGCTAATAAGAGCTTACTATTTTCAGCTCATCA
Found at i:82511959 original size:21 final size:20
Alignment explanation
Indices: 82511931--82511971 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
82511921 ATGAATTTAT
*
82511931 TATTAATTTAATACAATTCA
1 TATTAATTAAATACAATTCA
*
82511951 TATTCAATTAAATCCAATTCA
1 TATT-AATTAAATACAATTCA
82511972 CATCTTAGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (20 bp):
TATTAATTAAATACAATTCA
Found at i:82516759 original size:23 final size:23
Alignment explanation
Indices: 82516730--82516778 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
82516720 GATTATAATC
82516730 ATGATTGCACAAATGTATGCTTT
1 ATGATTGCACAAATGTATGCTTT
82516753 ATGATTGCACAAATGTATGCTTT
1 ATGATTGCACAAATGTATGCTTT
82516776 ATG
1 ATG
82516779 TTGTGATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (23 bp):
ATGATTGCACAAATGTATGCTTT
Found at i:82520149 original size:48 final size:48
Alignment explanation
Indices: 82520066--82520285 Score: 164
Period size: 48 Copynumber: 4.6 Consensus size: 48
82520056 TGATATGTGC
* * * *
82520066 GCTAGTGTAAGACCATGTCTGAGG-CATGGCATCGGCCA-CATTATGAGT
1 GCTAGTGTAAGACCATGTTTG-GGACATGACATCGGCCATCA-TAGGAGA
* * *
82520114 GCTAGTGTAATACCATGTTTGGGACATGACGTCGGCCATGATAGGAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGACATCGGCCATCATAGGAGA
* * * *
82520162 GCCAGTGTAAGACCAT-TTCTGGGACATGACATCGG-CATTGATATGTACA
1 GCTAGTGTAAGACCATGTT-TGGGACATGACATCGGCCA-TCATA-GGAGA
* * * * * *
82520211 -CTAGTGTAAGACCATGTCTGGAAAATGACATCGGCC-TCGACATGTGA
1 GCTAGTGTAAGACCATGTTTGGGACATGACATCGGCCATC-ATAGGAGA
* * *
82520258 GCCAGTGTAATACCATGTTTGGCACATG
1 GCTAGTGTAAGACCATGTTTGGGACATG
82520286 GCATTGGCAA
Statistics
Matches: 136, Mismatches: 27, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
47 8 0.06
48 122 0.90
49 6 0.04
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTTTGGGACATGACATCGGCCATCATAGGAGA
Found at i:82520285 original size:96 final size:96
Alignment explanation
Indices: 82520115--82520294 Score: 220
Period size: 96 Copynumber: 1.9 Consensus size: 96
82520105 ATTATGAGTG
* * * * * *
82520115 CTAGTGTAATACCATGTTTGGGACATGACGTCGGCCATGATAGGAGAGCCAGTGTAAGACCATTT
1 CTAGTGTAAGACCATGTCTGGAAAATGACATCGGCCATGACAGGAGAGCCAGTGTAAGACCATTT
*
82520180 CTGGGACATGACATCGGCATTGATATGTACA
66 CTGGCACATGACATCGGCATTGATATGTACA
* * *
82520211 CTAGTGTAAGACCATGTCTGGAAAATGACATCGGCC-TCGACATGTGAGCCAGTGTAATACCATG
1 CTAGTGTAAGACCATGTCTGGAAAATGACATCGGCCAT-GACAGGAGAGCCAGTGTAAGACCAT-
* *
82520275 TT-TGGCACATGGCATTGGCA
64 TTCTGGCACATGACATCGGCA
82520295 ATTCACCCTC
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
95 1 0.01
96 67 0.96
97 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (96 bp):
CTAGTGTAAGACCATGTCTGGAAAATGACATCGGCCATGACAGGAGAGCCAGTGTAAGACCATTT
CTGGCACATGACATCGGCATTGATATGTACA
Found at i:82526276 original size:40 final size:41
Alignment explanation
Indices: 82526171--82526350 Score: 138
Period size: 40 Copynumber: 4.3 Consensus size: 41
82526161 ATTATACTTG
* * **
82526171 GCACTCAGTGTGC-AT-TTCGAGATAGCTTCGGCTATATAAA
1 GCACTAAGTGTGCGATATT-GAGATAGCTTCGGCTTTATTGA
*
82526211 GCACTTAGTGTGCGA-ATTG-GAATAGCTTCGGCTTTATTGA
1 GCACTAAGTGTGCGATATTGAG-ATAGCTTCGGCTTTATTGA
*
82526251 -CACTAAGTGTACGATATTGAGATAGCTTCGG-TTTAATGTGA
1 GCACTAAGTGTGCGATATTGAGATAGCTTCGGCTTT-AT-TGA
* ** * *
82526292 TGGCACTAAGTGTGCGATATCGTTATAGCTTCGGCTAATCATTTA
1 --GCACTAAGTGTGCGATATTGAGATAGCTTCGGCT--TTATTGA
82526337 TGCACTAAGTGTGC
1 -GCACTAAGTGTGC
82526351 AAGTTTTCAA
Statistics
Matches: 114, Mismatches: 13, Indels: 22
0.77 0.09 0.15
Matches are distributed among these distances:
39 16 0.14
40 45 0.39
41 7 0.06
44 40 0.35
45 3 0.03
46 2 0.02
47 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (41 bp):
GCACTAAGTGTGCGATATTGAGATAGCTTCGGCTTTATTGA
Found at i:82529154 original size:16 final size:15
Alignment explanation
Indices: 82529133--82529204 Score: 81
Period size: 16 Copynumber: 4.5 Consensus size: 15
82529123 CGTTTGGTTC
82529133 ACTGTAATGGAATAGG
1 ACTGTAATGGAATA-G
*
82529149 ACTGTAATTGAATAG
1 ACTGTAATGGAATAG
*
82529164 AATTGTAATGGAATAG
1 -ACTGTAATGGAATAG
*
82529180 AGTTGTAATGGAATAG
1 A-CTGTAATGGAATAG
82529196 AGCTGTAAT
1 A-CTGTAAT
82529205 CAGTAATTCA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
15 2 0.04
16 48 0.96
ACGTcount: A:0.39, C:0.04, G:0.26, T:0.31
Consensus pattern (15 bp):
ACTGTAATGGAATAG
Found at i:82529203 original size:32 final size:32
Alignment explanation
Indices: 82529133--82529204 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
82529123 CGTTTGGTTC
*
82529133 ACTGTAATGGAATAGGACTGTAATTGAATAGA
1 ACTGTAATGGAATAGGACTGTAATGGAATAGA
* *
82529165 ATTGTAATGGAATA-GAGTTGTAATGGAATAGA
1 ACTGTAATGGAATAGGA-CTGTAATGGAATAGA
*
82529197 GCTGTAAT
1 ACTGTAAT
82529205 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 2 0.06
32 32 0.94
ACGTcount: A:0.39, C:0.04, G:0.26, T:0.31
Consensus pattern (32 bp):
ACTGTAATGGAATAGGACTGTAATGGAATAGA
Found at i:82529271 original size:44 final size:46
Alignment explanation
Indices: 82529190--82529278 Score: 139
Period size: 44 Copynumber: 2.0 Consensus size: 46
82529180 AGTTGTAATG
82529190 GAATAGAGCTGTAATCAGTAATTCAATTATTTGGTTGAATGGAATT
1 GAATAGAGCTGTAATCAGTAATTCAATTATTTGGTTGAATGGAATT
*
82529236 GAATAGAGCTGTAAT-AG-AATTC-ATGTGTTTGGTTGAATGGAAT
1 GAATAGAGCTGTAATCAGTAATTCAAT-TATTTGGTTGAATGGAAT
82529279 AGATGTTTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
43 2 0.05
44 22 0.54
45 2 0.05
46 15 0.37
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (46 bp):
GAATAGAGCTGTAATCAGTAATTCAATTATTTGGTTGAATGGAATT
Found at i:82529279 original size:39 final size:41
Alignment explanation
Indices: 82529181--82529281 Score: 109
Period size: 44 Copynumber: 2.4 Consensus size: 41
82529171 ATGGAATAGA
82529181 GTTGTAATGGAATAGAGCTGTAATCAGTAATTCAATTATTTG
1 GTTG-AATGGAATAGAGCTGTAATCAGTAATTCAATTATTTG
*
82529223 GTTGAATGGAATTGAATAGAGCTGTAAT-AG-AATTC-ATGTGTTTG
1 GTTGAAT-G----GAATAGAGCTGTAATCAGTAATTCAAT-TATTTG
82529267 GTTGAATGGAATAGA
1 GTTGAATGGAATAGA
82529282 TGTTTTAATA
Statistics
Matches: 52, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
39 7 0.13
41 3 0.06
42 5 0.10
43 3 0.06
44 17 0.33
45 2 0.04
46 15 0.29
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.36
Consensus pattern (41 bp):
GTTGAATGGAATAGAGCTGTAATCAGTAATTCAATTATTTG
Found at i:82531886 original size:132 final size:133
Alignment explanation
Indices: 82531649--82531914 Score: 507
Period size: 132 Copynumber: 2.0 Consensus size: 133
82531639 CTGCTATGTC
82531649 AACAGCTCATAAAAATTCACTGAAACACAGAAACTCTGATTGTATGAACTAGAGAACTTTGACCA
1 AACAGCTCATAAAAATTCACTGAAACACAGAAACTCTGATTGTATGAACTAGAGAACTTTGACCA
*
82531714 GGAAATAAACTATAGATCCAAGTAAATCAATTTCAACATTCAAAGAGAAAAAAA-AAATATGCTC
66 GGAAATAAACTACAGATCCAAGTAAATCAATTTCAACATTCAAAGAGAAAAAAATAAATATGCTC
82531778 TTG
131 TTG
82531781 AACAGCTCATAAAAATTCACTGAAACACAGAAACTCTGATTGTATGAACTAGAGAACTTTGACCA
1 AACAGCTCATAAAAATTCACTGAAACACAGAAACTCTGATTGTATGAACTAGAGAACTTTGACCA
*
82531846 GGAAATAAACTACAGATCCAAGTAAATCAATTTCAACATTCAAAGAGAAAAAAATATATATGCTC
66 GGAAATAAACTACAGATCCAAGTAAATCAATTTCAACATTCAAAGAGAAAAAAATAAATATGCTC
82531911 TTG
131 TTG
82531914 A
1 A
82531915 TCATAAAGTA
Statistics
Matches: 131, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
132 118 0.90
133 13 0.10
ACGTcount: A:0.47, C:0.17, G:0.13, T:0.24
Consensus pattern (133 bp):
AACAGCTCATAAAAATTCACTGAAACACAGAAACTCTGATTGTATGAACTAGAGAACTTTGACCA
GGAAATAAACTACAGATCCAAGTAAATCAATTTCAACATTCAAAGAGAAAAAAATAAATATGCTC
TTG
Found at i:82539437 original size:47 final size:47
Alignment explanation
Indices: 82539382--82539476 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
82539372 ATTGGAGCAG
*
82539382 CAACTGCATAGCGAGTGTCAACAAAGGCAGCAAACCAAGCATGCATT
1 CAACTGCATAGCGAGTGTCAACAAAGGCAGCAAACCAAGCATACATT
82539429 CAACTGCATAGCGAGTGTCAACAAAGGCAGCAAACCAAGCATACATT
1 CAACTGCATAGCGAGTGTCAACAAAGGCAGCAAACCAAGCATACATT
82539476 C
1 C
82539477 CTGCAGTTCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.39, C:0.26, G:0.20, T:0.15
Consensus pattern (47 bp):
CAACTGCATAGCGAGTGTCAACAAAGGCAGCAAACCAAGCATACATT
Found at i:82541830 original size:27 final size:27
Alignment explanation
Indices: 82541795--82541851 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
82541785 ATGAAAAAAT
* *
82541795 AATCTTAAT-TCTGCTTGTGGAGTTAAA
1 AATCTTAATCTC-GCTTCTAGAGTTAAA
82541822 AATCTTAATCTCGCTTCTAGAGTTAAA
1 AATCTTAATCTCGCTTCTAGAGTTAAA
82541849 AAT
1 AAT
82541852 ACGGAGGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (27 bp):
AATCTTAATCTCGCTTCTAGAGTTAAA
Found at i:82548091 original size:45 final size:45
Alignment explanation
Indices: 82548027--82548206 Score: 351
Period size: 45 Copynumber: 4.0 Consensus size: 45
82548017 GTTGCAGGAA
82548027 GAAACTAGAAATTTGTTTTAAATTAAATTAATTTTTTATTGTTTT
1 GAAACTAGAAATTTGTTTTAAATTAAATTAATTTTTTATTGTTTT
82548072 GAAACTAGAAATTTGTTTTAAATTAAATTAATTTTTTATTGTTTT
1 GAAACTAGAAATTTGTTTTAAATTAAATTAATTTTTTATTGTTTT
82548117 GAAACTAGAAATTTGTTTTAAATTAAATTAATTTTTTATTGTTTT
1 GAAACTAGAAATTTGTTTTAAATTAAATTAATTTTTTATTGTTTT
*
82548162 GAAACTAGAAATTTGTTTTAAATTAAATTAATTTTTTATTATTTT
1 GAAACTAGAAATTTGTTTTAAATTAAATTAATTTTTTATTGTTTT
82548207 TAAAAAATTA
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
45 134 1.00
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.53
Consensus pattern (45 bp):
GAAACTAGAAATTTGTTTTAAATTAAATTAATTTTTTATTGTTTT
Found at i:82548217 original size:30 final size:34
Alignment explanation
Indices: 82548181--82548255 Score: 86
Period size: 35 Copynumber: 2.3 Consensus size: 34
82548171 AATTTGTTTT
82548181 AAATT-AAAT-TAATTTT-TTATTATT-TTTAAA
1 AAATTAAAATATAATTTTATTATTATTATTTAAA
*
82548211 AAATTAAAATATAATTTTATTTTTATTAATTTAAA
1 AAATTAAAATATAATTTTATTATTATT-ATTTAAA
**
82548246 ATTTTAAAAT
1 AAATTAAAAT
82548256 TTTTATTAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 5 0.14
31 4 0.11
32 7 0.19
33 7 0.19
35 14 0.38
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (34 bp):
AAATTAAAATATAATTTTATTATTATTATTTAAA
Found at i:82550695 original size:54 final size:53
Alignment explanation
Indices: 82550613--82550719 Score: 196
Period size: 54 Copynumber: 2.0 Consensus size: 53
82550603 GTGTCCTCTT
*
82550613 TCCCTATGGACTATTCATGTTTTAAAGGAAGATCTGTATTCAAAACAGAAGTG
1 TCCCTATGGACGATTCATGTTTTAAAGGAAGATCTGTATTCAAAACAGAAGTG
82550666 NTCCCTATGGACGATTCATGTTTTAAAGGAAGATCTGTATTCAAAACAGAAGTG
1 -TCCCTATGGACGATTCATGTTTTAAAGGAAGATCTGTATTCAAAACAGAAGTG
82550720 GCTGCAGAGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (53 bp):
TCCCTATGGACGATTCATGTTTTAAAGGAAGATCTGTATTCAAAACAGAAGTG
Found at i:82555604 original size:4 final size:4
Alignment explanation
Indices: 82555595--82555636 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
82555585 AAATTAGAAT
82555595 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
82555637 GTCACGAAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:82555708 original size:33 final size:33
Alignment explanation
Indices: 82555666--82556491 Score: 1652
Period size: 33 Copynumber: 25.0 Consensus size: 33
82555656 TCTGCTTAAG
82555666 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82555699 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82555732 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82555765 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82555798 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82555831 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82555864 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82555897 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82555930 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82555963 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82555996 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556029 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556062 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556095 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556128 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556161 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556194 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556227 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556260 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556293 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556326 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556359 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556392 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556425 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556458 GATCAACATAAATACGCTTATTTTCAAAACTAA
1 GATCAACATAAATACGCTTATTTTCAAAACTAA
82556491 G
1 G
82556492 TAAATTTTTA
Statistics
Matches: 793, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 793 1.00
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.30
Consensus pattern (33 bp):
GATCAACATAAATACGCTTATTTTCAAAACTAA
Found at i:82560645 original size:18 final size:18
Alignment explanation
Indices: 82560622--82560704 Score: 70
Period size: 18 Copynumber: 4.8 Consensus size: 18
82560612 CCCTGGCCTG
82560622 TTGATTATATAATTTAAA
1 TTGATTATATAATTTAAA
*
82560640 TTGATTATATAATTAAAAA
1 TTGATTATATAATT-TAAA
82560659 TT-ATTATCAT--TTT--A
1 TTGATTAT-ATAATTTAAA
* *
82560673 TCT-AATAAATAATTTAAA
1 T-TGATTATATAATTTAAA
82560691 TTGATTATATAATT
1 TTGATTATATAATT
82560705 CATTAAAATA
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
14 4 0.08
15 4 0.08
16 3 0.06
17 3 0.06
18 30 0.59
19 7 0.14
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (18 bp):
TTGATTATATAATTTAAA
Found at i:82560949 original size:21 final size:21
Alignment explanation
Indices: 82560923--82560975 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
82560913 CCGCTGTTCT
*
82560923 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
82560944 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
82560965 AATCTCACCGC
1 AATCTCACCGC
82560976 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:82564639 original size:38 final size:39
Alignment explanation
Indices: 82564576--82564653 Score: 149
Period size: 38 Copynumber: 2.0 Consensus size: 39
82564566 ATATACAAAT
82564576 ATATATTAAATAAAAAATGGATGGTCGGGGAGGAAACTA
1 ATATATTAAATAAAAAATGGATGGTCGGGGAGGAAACTA
82564615 ATATATTAAAT-AAAAATGGATGGTCGGGGAGGAAACTA
1 ATATATTAAATAAAAAATGGATGGTCGGGGAGGAAACTA
82564653 A
1 A
82564654 CCTGAGGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
38 28 0.72
39 11 0.28
ACGTcount: A:0.46, C:0.05, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATATTAAATAAAAAATGGATGGTCGGGGAGGAAACTA
Found at i:82565997 original size:12 final size:13
Alignment explanation
Indices: 82565978--82566014 Score: 60
Period size: 12 Copynumber: 3.0 Consensus size: 13
82565968 ATGCAGGTTG
82565978 ACAAAACAAAAAA
1 ACAAAACAAAAAA
82565991 A-AAAACAAAAAA
1 ACAAAACAAAAAA
82566003 ACAAAA-AAAAAA
1 ACAAAACAAAAAA
82566015 CCGGAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 18 0.78
13 5 0.22
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (13 bp):
ACAAAACAAAAAA
Found at i:82566000 original size:8 final size:8
Alignment explanation
Indices: 82565978--82566011 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
82565968 ATGCAGGTTG
82565978 ACAAAACAA
1 ACAAAA-AA
*
82565987 AAAAAAAA
1 ACAAAAAA
82565995 ACAAAAAA
1 ACAAAAAA
82566003 ACAAAAAA
1 ACAAAAAA
82566011 A
1 A
82566012 AAACCGGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 18 0.78
9 5 0.22
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (8 bp):
ACAAAAAA
Done.