Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 246 of 284
Found at i:82566000 original size:17 final size:17
Alignment explanation
Indices: 82565978--82566012 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
82565968 ATGCAGGTTG
82565978 ACAAAACAAA-AAAAAAA
1 ACAAAA-AAACAAAAAAA
82565995 ACAAAAAAACAAAAAAA
1 ACAAAAAAACAAAAAAA
82566012 A
1 A
82566013 AACCGGAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (17 bp):
ACAAAAAAACAAAAAAA
Found at i:82569939 original size:31 final size:31
Alignment explanation
Indices: 82569894--82569956 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
82569884 TTAATATAAT
* *
82569894 ATTTGGTACCTAAACTTGACACTTTTTTTTA
1 ATTTGATACCTAAACTTGACACTTTTTCTTA
*
82569925 ATTTGATACTTAAACTTGACACTTTTTCTTA
1 ATTTGATACCTAAACTTGACACTTTTTCTTA
82569956 A
1 A
82569957 GTTGGTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.48
Consensus pattern (31 bp):
ATTTGATACCTAAACTTGACACTTTTTCTTA
Found at i:82570534 original size:60 final size:62
Alignment explanation
Indices: 82570407--82570534 Score: 149
Period size: 60 Copynumber: 2.1 Consensus size: 62
82570397 TAAAATTAAG
* * *
82570407 TACCAAATTGAACCTAAAAAAAGCTTAGGTAACAAACTAGGAGAAAGTGTCAAGTTCAAGCA
1 TACCAAATTGAACCTAAAAAAAGCTTAGGTAACAAACTAGAAAAAAATGTCAAGTTCAAGCA
* * * *
82570469 T--CAAATTGGA-CTAAAAAAAAGTTTAGGTACCAAATTAGAAAAAAATGTCAAGTTC-AG-A
1 TACCAAATTGAACCT-AAAAAAAGCTTAGGTAACAAACTAGAAAAAAATGTCAAGTTCAAGCA
82570527 TACCAAAT
1 TACCAAAT
82570535 GTTATATTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
58 2 0.04
59 4 0.07
60 49 0.88
62 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.16, T:0.22
Consensus pattern (62 bp):
TACCAAATTGAACCTAAAAAAAGCTTAGGTAACAAACTAGAAAAAAATGTCAAGTTCAAGCA
Found at i:82573507 original size:74 final size:74
Alignment explanation
Indices: 82573420--82573568 Score: 210
Period size: 74 Copynumber: 2.0 Consensus size: 74
82573410 TATACGTAAT
*
82573420 ATGTATTAGAGACGATCATAATAAT-ATAATATATAATAAAAAACTGTTCACATATTACATAAGT
1 ATGTATTAGAGACGATCATAATAATCATAAGAT-TAATAAAAAACTGTTCACATATTACATAAGT
82573484 ATGTACATAA
65 ATGTACATAA
* ** ** * *
82573494 ATGTATTAGAGACGATGATCTTGGTCTTGAGATTAATAAAAAACTGTTCACATATTACATAAGTA
1 ATGTATTAGAGACGATCATAATAATCATAAGATTAATAAAAAACTGTTCACATATTACATAAGTA
82573559 TGTACATAA
66 TGTACATAA
82573568 A
1 A
82573569 CATATATATA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
74 62 0.94
75 4 0.06
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (74 bp):
ATGTATTAGAGACGATCATAATAATCATAAGATTAATAAAAAACTGTTCACATATTACATAAGTA
TGTACATAA
Found at i:82573911 original size:26 final size:26
Alignment explanation
Indices: 82573851--82573924 Score: 64
Period size: 26 Copynumber: 2.8 Consensus size: 26
82573841 AAACCATAGT
*
82573851 AATAAAA-ATAATATAATAATATAAA
1 AATAAAATAAAATATAATAATATAAA
** *
82573876 AAGT-GGATAAAATATAATGATATAAA
1 AA-TAAAATAAAATATAATAATATAAA
82573902 AATAAAATAAGAATA-AAGTAATA
1 AATAAAATAA-AATATAA-TAATA
82573925 GGTAATAATA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
25 4 0.11
26 25 0.68
27 8 0.22
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (26 bp):
AATAAAATAAAATATAATAATATAAA
Found at i:82574524 original size:8 final size:8
Alignment explanation
Indices: 82574504--82574537 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
82574494 AAATTTGATT
82574504 TTTTTATA
1 TTTTTATA
82574512 TTTTTTATA
1 -TTTTTATA
82574521 TTTTTATA
1 TTTTTATA
*
82574529 CTTTTATA
1 TTTTTATA
82574537 T
1 T
82574538 GTATATATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTATA
Found at i:82575179 original size:21 final size:20
Alignment explanation
Indices: 82575149--82575187 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
82575139 AGTAGGTTTA
82575149 GTTATTGGGTTTTGGGGTGG
1 GTTATTGGGTTTTGGGGTGG
82575169 GTTAGTTGGGTTTTGGGGT
1 GTTA-TTGGGTTTTGGGGT
82575188 TTAATGGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.05, C:0.00, G:0.49, T:0.46
Consensus pattern (20 bp):
GTTATTGGGTTTTGGGGTGG
Found at i:82583305 original size:17 final size:18
Alignment explanation
Indices: 82583266--82583305 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
82583256 GCCTAAATTT
* *
82583266 CCACATGCCCGTGTGGAC
1 CCACAAGCCCGTGTAGAC
82583284 CCACAAGCCCGTGTAG-C
1 CCACAAGCCCGTGTAGAC
82583301 CCACA
1 CCACA
82583306 TGGCCACACC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.23, C:0.42, G:0.23, T:0.12
Consensus pattern (18 bp):
CCACAAGCCCGTGTAGAC
Found at i:82588992 original size:25 final size:25
Alignment explanation
Indices: 82588953--82589003 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
82588943 TTTAGTACAG
* *
82588953 TTTCAGTATATACTAACTAGAATAT
1 TTTCAGAATAGACTAACTAGAATAT
* *
82588978 TTTCAGAATAGACTATCTATAATAT
1 TTTCAGAATAGACTAACTAGAATAT
82589003 T
1 T
82589004 GTAACAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (25 bp):
TTTCAGAATAGACTAACTAGAATAT
Found at i:82599710 original size:13 final size:13
Alignment explanation
Indices: 82599692--82599717 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82599682 GCTCGACAGG
82599692 GACACGCCCGTGT
1 GACACGCCCGTGT
82599705 GACACGCCCGTGT
1 GACACGCCCGTGT
82599718 ACGATTACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:82606904 original size:19 final size:19
Alignment explanation
Indices: 82606869--82606906 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
82606859 ACATAATTTT
*
82606869 TAAAGGTAAAAATAAAAAA
1 TAAAGGTAAAAAGAAAAAA
82606888 TAAA-GTAAAATAGAAAAAA
1 TAAAGGTAAAA-AGAAAAAA
82606907 AGAACATGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.16
Consensus pattern (19 bp):
TAAAGGTAAAAAGAAAAAA
Found at i:82608402 original size:15 final size:16
Alignment explanation
Indices: 82608369--82608407 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
82608359 AAATGACATG
82608369 ATTGTGTTAGGTATAA
1 ATTGTGTTAGGTATAA
*
82608385 ATTGTTTTAGGT-TAA
1 ATTGTGTTAGGTATAA
*
82608400 ATTATGTT
1 ATTGTGTT
82608408 TATGACCCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.51
Consensus pattern (16 bp):
ATTGTGTTAGGTATAA
Found at i:82613771 original size:25 final size:25
Alignment explanation
Indices: 82613743--82613819 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
82613733 ACACAATGCT
82613743 TTAGTTAGGAGAATAAAAAATACAC
1 TTAGTTAGGAGAATAAAAAATACAC
* * * ***
82613768 TTAGTT-GG-TAA-ACACAAT-GTT
1 TTAGTTAGGAGAATAAAAAATACAC
*
82613789 TTAGTTAGGAGAATAAAAAATATAC
1 TTAGTTAGGAGAATAAAAAATACAC
82613814 TTAGTT
1 TTAGTT
82613820 GGTCATAGGA
Statistics
Matches: 36, Mismatches: 12, Indels: 8
0.64 0.21 0.14
Matches are distributed among these distances:
21 6 0.17
22 7 0.19
23 4 0.11
24 7 0.19
25 12 0.33
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.32
Consensus pattern (25 bp):
TTAGTTAGGAGAATAAAAAATACAC
Found at i:82613783 original size:46 final size:46
Alignment explanation
Indices: 82613730--82613822 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
82613720 TGGAGTAGGC
82613730 TAAACACAATGCTTTAGTTAGGAGAATAAAAAATACACTTAGTTGG
1 TAAACACAATGCTTTAGTTAGGAGAATAAAAAATACACTTAGTTGG
* *
82613776 TAAACACAATGTTTTAGTTAGGAGAATAAAAAATATACTTAGTTGG
1 TAAACACAATGCTTTAGTTAGGAGAATAAAAAATACACTTAGTTGG
82613822 T
1 T
82613823 CATAGGAAGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (46 bp):
TAAACACAATGCTTTAGTTAGGAGAATAAAAAATACACTTAGTTGG
Found at i:82620283 original size:22 final size:22
Alignment explanation
Indices: 82620258--82620324 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
82620248 GTACGTTTGC
82620258 TTATCGACGAATGCCTTTTGGA
1 TTATCGACGAATGCCTTTTGGA
*
82620280 TTAT-GTA--AA-GCTCTTTT-GC
1 TTATCG-ACGAATGC-CTTTTGGA
82620299 TTATCGACGAATGCCTTTTGGA
1 TTATCGACGAATGCCTTTTGGA
82620321 TTAT
1 TTAT
82620325 GTAATGCTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
19 8 0.22
20 8 0.22
21 8 0.22
22 12 0.33
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.42
Consensus pattern (22 bp):
TTATCGACGAATGCCTTTTGGA
Found at i:82620310 original size:41 final size:41
Alignment explanation
Indices: 82620253--82620335 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
82620243 ATACGGTACG
82620253 TTTGCTTATCGACGAATGCCTTTTGGATTATGTAAAGCTCT
1 TTTGCTTATCGACGAATGCCTTTTGGATTATGTAAAGCTCT
*
82620294 TTTGCTTATCGACGAATGCCTTTTGGATTATGTAATGCTCT
1 TTTGCTTATCGACGAATGCCTTTTGGATTATGTAAAGCTCT
82620335 T
1 T
82620336 GCTACTTTTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.43
Consensus pattern (41 bp):
TTTGCTTATCGACGAATGCCTTTTGGATTATGTAAAGCTCT
Found at i:82620317 original size:21 final size:21
Alignment explanation
Indices: 82620253--82620318 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
82620243 ATACGGTACG
82620253 TTTGCTTATCGACGAATGCCT
1 TTTGCTTATCGACGAATGCCT
*
82620274 TTTGGATTAT-GTA--AA-GCTCT
1 TTT-GCTTATCG-ACGAATGC-CT
82620294 TTTGCTTATCGACGAATGCCT
1 TTTGCTTATCGACGAATGCCT
82620315 TTTG
1 TTTG
82620319 GATTATGTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
19 8 0.22
20 8 0.22
21 12 0.33
22 8 0.22
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (21 bp):
TTTGCTTATCGACGAATGCCT
Found at i:82624575 original size:7 final size:7
Alignment explanation
Indices: 82624563--82624588 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
82624553 TGTTGCTAGA
82624563 GGTTTAG
1 GGTTTAG
82624570 GGTTTAG
1 GGTTTAG
82624577 GGTTTAG
1 GGTTTAG
82624584 GGTTT
1 GGTTT
82624589 TAATCATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.46
Consensus pattern (7 bp):
GGTTTAG
Found at i:82625103 original size:23 final size:23
Alignment explanation
Indices: 82625077--82625134 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 23
82625067 ATGTACAAAT
*
82625077 ATATATAAAAATATTTAAATAAA
1 ATATATAAAAATATTAAAATAAA
* * *
82625100 ATAT-TACATAATGTTAAAATAAT
1 ATATATA-AAAATATTAAAATAAA
82625123 ATAATATAAAAA
1 AT-ATATAAAAA
82625135 CTTCAAAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
22 2 0.07
23 18 0.67
24 5 0.19
25 2 0.07
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (23 bp):
ATATATAAAAATATTAAAATAAA
Found at i:82628353 original size:40 final size:40
Alignment explanation
Indices: 82628297--82628526 Score: 322
Period size: 40 Copynumber: 5.8 Consensus size: 40
82628287 GATGATAACG
* *
82628297 GGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
82628337 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
* *
82628377 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
* *
82628417 GGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTATATT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-ATTCC
* *
82628457 GGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCA
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTAAT-TCC
*
82628497 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
82628527 AGCTATATTC
Statistics
Matches: 175, Mismatches: 11, Indels: 9
0.90 0.06 0.05
Matches are distributed among these distances:
38 2 0.01
39 3 0.02
40 165 0.94
41 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
Found at i:82628533 original size:40 final size:39
Alignment explanation
Indices: 82628297--82628552 Score: 313
Period size: 40 Copynumber: 6.4 Consensus size: 39
82628287 GATGATAACG
* *
82628297 GGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAATTCC
*
82628337 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAATTCC
*
82628377 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATTCC
*
82628417 GGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTATATT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTA-ATTCC
* *
82628457 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCA
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTAAT-TCC
*
82628497 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTA-ATTCC
* *
82628537 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
82628553 TACTTGGTTT
Statistics
Matches: 195, Mismatches: 13, Indels: 17
0.87 0.06 0.08
Matches are distributed among these distances:
38 2 0.01
39 18 0.09
40 167 0.86
41 6 0.03
42 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATTCC
Found at i:82635884 original size:40 final size:39
Alignment explanation
Indices: 82635829--82636004 Score: 203
Period size: 40 Copynumber: 4.4 Consensus size: 39
82635819 GATGATAACG
*
82635829 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATA-TCC
*
82635869 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATATCC
* *
82635909 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCA
1 GGGCTAAGTCCCGAAGGCATTTGTGC-AAGTACTATATCC
* * * *
82635949 GGGCTAAGTCCCTAAGGCATTTGAGCGAGTAGCTATATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-CTATATCC
* *
82635989 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
82636005 TACTTGGTTT
Statistics
Matches: 119, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
39 16 0.13
40 100 0.84
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATATCC
Found at i:82635966 original size:80 final size:80
Alignment explanation
Indices: 82635829--82636004 Score: 225
Period size: 80 Copynumber: 2.2 Consensus size: 80
82635819 GATGATAACG
* * * *
82635829 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCAGGGCTAAGTCCCGAAGGCATTTGAG
82635894 CGAGTTA-CTATATCC
66 CGAG-TAGCTATATCC
*
82635909 GGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCAGGGCTAAGTCCCTAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGC-AACTGACTAAT-TCAGGGCTAAGTCCCGAAGGCATTTG
*
82635972 AGCGAGTAGCTATATTC
64 AGCGAGTAGCTATATCC
* *
82635989 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
82636005 TACTTGGTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
79 18 0.21
80 65 0.76
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCAGGGCTAAGTCCCGAAGGCATTTGAG
CGAGTAGCTATATCC
Found at i:82637658 original size:41 final size:41
Alignment explanation
Indices: 82637601--82637689 Score: 142
Period size: 41 Copynumber: 2.2 Consensus size: 41
82637591 TTCTCCTGGT
*
82637601 GCCGCTAATGCTTGACCTTTTGCGGCATTTTTCTCATAAAC
1 GCCGCTAATACTTGACCTTTTGCGGCATTTTTCTCATAAAC
* *
82637642 GCCGCTAATACTTGACCTTTTGTGGCATTTTTCTCATGAAC
1 GCCGCTAATACTTGACCTTTTGCGGCATTTTTCTCATAAAC
*
82637683 CCCGCTA
1 GCCGCTA
82637690 CTAATTTACA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (41 bp):
GCCGCTAATACTTGACCTTTTGCGGCATTTTTCTCATAAAC
Found at i:82640045 original size:39 final size:40
Alignment explanation
Indices: 82639975--82640066 Score: 118
Period size: 39 Copynumber: 2.4 Consensus size: 40
82639965 CCATCTCTGT
* *
82639975 CCAACCCAACACA-C-TATATGGGGATAAAATCGACGCAC
1 CCAACCCTACACACCGTATATGGGGATAAAATCGACCCAC
* * *
82640013 CCATCCCTACACACCGTATAT-GGGATATAATCGACCCAT
1 CCAACCCTACACACCGTATATGGGGATAAAATCGACCCAC
82640052 CCAACCCTACACACC
1 CCAACCCTACACACC
82640067 ATAAAGTACC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 11 0.24
39 30 0.65
40 5 0.11
ACGTcount: A:0.35, C:0.37, G:0.12, T:0.16
Consensus pattern (40 bp):
CCAACCCTACACACCGTATATGGGGATAAAATCGACCCAC
Found at i:82641101 original size:16 final size:15
Alignment explanation
Indices: 82641061--82641118 Score: 53
Period size: 16 Copynumber: 3.7 Consensus size: 15
82641051 TACAACTAAT
*
82641061 CGAAAAAGAAGAAAA
1 CGAAGAAGAAGAAAA
*
82641076 CGAAGGAGAAGAAAAA
1 CGAAGAAGAAG-AAAA
* *
82641092 CGGAGAAGAAGGGAAA
1 CGAAGAAGAA-GAAAA
82641108 CTGAAGAAGAA
1 C-GAAGAAGAA
82641119 AAGTTCATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 9 0.26
16 16 0.47
17 9 0.26
ACGTcount: A:0.60, C:0.07, G:0.31, T:0.02
Consensus pattern (15 bp):
CGAAGAAGAAGAAAA
Found at i:82654817 original size:25 final size:25
Alignment explanation
Indices: 82654788--82654836 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
82654778 TGCGTAATAA
*
82654788 AATGTGATTAATTAAATA-TGTTGGC
1 AATGTGAATAATTAAA-ACTGTTGGC
*
82654813 AATGTGAATACTTAAAACTGTTGG
1 AATGTGAATAATTAAAACTGTTGG
82654837 ATATCGTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (25 bp):
AATGTGAATAATTAAAACTGTTGGC
Found at i:82656930 original size:83 final size:83
Alignment explanation
Indices: 82656821--82657003 Score: 235
Period size: 83 Copynumber: 2.2 Consensus size: 83
82656811 TAAAAAAAAT
* *
82656821 TTAAGCCCCTATTTTTTCACTCAATTGGGTACTTAAACTTTCAAAATGTAACAAAAAAGTTCTCA
1 TTAAGCCCCTATTTTTTCACTCAATTGGGTACTTAAACTGTCAAAATGT-ACAAAAAAGTCCTCA
*** *
82656886 AACTTTTTCAAAAAAAGTAA
65 AA-TTTAAAAAAAAAAGCAA
* * * * *
82656906 TTAAG-CCCT-TTTTTTCACTCAATTGTGTATTTGAGCTGTCAAAATGTATAAAAAAGTCCTCAA
1 TTAAGCCCCTATTTTTTCACTCAATTGGGTACTTAAACTGTCAAAATGTACAAAAAAGTCCTCAA
82656969 ATTTAAAAAAAAAAGCAA
66 ATTTAAAAAAAAAAGCAA
82656987 TTAAGCCCCTATTTTTT
1 TTAAGCCCCTATTTTTT
82657004 TTCATTTTCA
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
81 18 0.21
82 19 0.22
83 39 0.46
84 4 0.05
85 5 0.06
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (83 bp):
TTAAGCCCCTATTTTTTCACTCAATTGGGTACTTAAACTGTCAAAATGTACAAAAAAGTCCTCAA
ATTTAAAAAAAAAAGCAA
Found at i:82657500 original size:10 final size:10
Alignment explanation
Indices: 82657465--82657559 Score: 65
Period size: 10 Copynumber: 9.7 Consensus size: 10
82657455 TGGCAAAAAG
**
82657465 ATAAAAATAA
1 ATAAAAATTT
**
82657475 ATAAAAATAA
1 ATAAAAATTT
82657485 AT-AAAATTT
1 ATAAAAATTT
82657494 ATAAAAA-TT
1 ATAAAAATTT
*
82657503 ATAAAATTTT
1 ATAAAAATTT
82657513 AATAAAAA-TT
1 -ATAAAAATTT
82657523 ATAAAAATATT
1 ATAAAAAT-TT
*
82657534 -T-TAAATTT
1 ATAAAAATTT
*
82657542 ATTAAAAATTG
1 A-TAAAAATTT
82657553 ATAAAAA
1 ATAAAAA
82657560 AAATTGATAA
Statistics
Matches: 70, Mismatches: 7, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
8 2 0.03
9 26 0.37
10 28 0.40
11 14 0.20
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (10 bp):
ATAAAAATTT
Found at i:82657501 original size:29 final size:30
Alignment explanation
Indices: 82657465--82657531 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 30
82657455 TGGCAAAAAG
*
82657465 ATAAAAATAAATAAAA-ATAAATAAAATTT
1 ATAAAAATAAATAAAATATAAATAAAAATT
* * *
82657494 ATAAAAAT-TATAAAATTTTAATAAAAATT
1 ATAAAAATAAATAAAATATAAATAAAAATT
82657523 ATAAAAATA
1 ATAAAAATA
82657532 TTTTAAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (30 bp):
ATAAAAATAAATAAAATATAAATAAAAATT
Found at i:82657517 original size:20 final size:19
Alignment explanation
Indices: 82657474--82657528 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
82657464 GATAAAAATA
*
82657474 AATAAAAATAAATAAAATTT
1 AATAAAAAT-TATAAAATTT
82657494 -ATAAAAATTATAAAATTTT
1 AATAAAAATTATAAAA-TTT
82657513 AATAAAAATTATAAAA
1 AATAAAAATTATAAAA
82657529 ATATTTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 6 0.19
19 11 0.34
20 15 0.47
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAAAAATTATAAAATTT
Found at i:82657542 original size:29 final size:29
Alignment explanation
Indices: 82657484--82657559 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
82657474 AATAAAAATA
*
82657484 AATAAAATTTATAAAAATTATAAAATTTT
1 AATAAAAATTATAAAAATTATAAAATTTT
* *
82657513 AATAAAAATTATAAAAATATTTTAAA-TTT
1 AATAAAAATTATAAAAAT-TATAAAATTTT
*
82657542 ATTAAAAATTGATAAAAA
1 AATAAAAATT-ATAAAAA
82657560 AAATTGATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
29 29 0.71
30 12 0.29
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (29 bp):
AATAAAAATTATAAAAATTATAAAATTTT
Found at i:82657571 original size:12 final size:13
Alignment explanation
Indices: 82657545--82657572 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
82657535 TAAATTTATT
82657545 AAAAATTGATAAA
1 AAAAATTGATAAA
82657558 AAAAATTGATAAA
1 AAAAATTGATAAA
82657571 AA
1 AA
82657573 TAGTAAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (13 bp):
AAAAATTGATAAA
Found at i:82657655 original size:9 final size:9
Alignment explanation
Indices: 82657638--82657687 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
82657628 AAGTAGTAAG
*
82657638 AAAATTATA
1 AAAAATATA
82657647 AAAAATATA
1 AAAAATATA
82657656 AAGAAATAT-
1 AA-AAATATA
*
82657665 AAAATTCATA
1 AAAAAT-ATA
82657675 AAAAATATA
1 AAAAATATA
82657684 AAAA
1 AAAA
82657688 TTATTGTACC
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
8 3 0.09
9 21 0.60
10 11 0.31
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (9 bp):
AAAAATATA
Found at i:82657688 original size:19 final size:18
Alignment explanation
Indices: 82657638--82657691 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
82657628 AAGTAGTAAG
* *
82657638 AAAATTATAAAAAATATA
1 AAAAATATAAAAATTATA
82657656 AAGAAATAT-AAAATTCATA
1 AA-AAATATAAAAATT-ATA
82657675 AAAAATATAAAAATTAT
1 AAAAATATAAAAATTAT
82657692 TGTACCAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (18 bp):
AAAAATATAAAAATTATA
Found at i:82660643 original size:16 final size:16
Alignment explanation
Indices: 82660621--82660659 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
82660611 AAAGCTAACA
82660621 ACAATATGATCAAAAT
1 ACAATATGATCAAAAT
* **
82660637 TCAATATTTTCAAAAT
1 ACAATATGATCAAAAT
82660653 ACAATAT
1 ACAATAT
82660660 CTCCCTTTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.33
Consensus pattern (16 bp):
ACAATATGATCAAAAT
Found at i:82671980 original size:24 final size:23
Alignment explanation
Indices: 82671949--82672000 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
82671939 CCTCTTTTTC
*
82671949 TCTCTTTCTTAGCCAAAGGCAAA
1 TCTCTTTCTCAGCCAAAGGCAAA
*
82671972 TCTCATTTCTCAGGCAAAGGCAAA
1 TCTC-TTTCTCAGCCAAAGGCAAA
82671996 TCTCT
1 TCTCT
82672001 CTTTCTAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (23 bp):
TCTCTTTCTCAGCCAAAGGCAAA
Found at i:82673390 original size:39 final size:39
Alignment explanation
Indices: 82673334--82673412 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
82673324 AATATTAATC
* *
82673334 TATGAAAGCCGTTTATTTTAGTTGGATGATATCAACATG
1 TATGAAAGCCGTCTATTTTAATTGGATGATATCAACATG
*
82673373 TATGAAAGCTGTCTATTTTAATTGGATGATATCAACATG
1 TATGAAAGCCGTCTATTTTAATTGGATGATATCAACATG
82673412 T
1 T
82673413 TTGATCCATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (39 bp):
TATGAAAGCCGTCTATTTTAATTGGATGATATCAACATG
Found at i:82680380 original size:20 final size:20
Alignment explanation
Indices: 82680357--82680396 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
82680347 ACAGTTTAAA
82680357 ATATAAATTTAGTAATATAT
1 ATATAAATTTAGTAATATAT
*
82680377 ATATAAATTTATTAATATAT
1 ATATAAATTTAGTAATATAT
82680397 GTAAAAACAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
ATATAAATTTAGTAATATAT
Found at i:82680541 original size:20 final size:20
Alignment explanation
Indices: 82680477--82680542 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
82680467 CATCCAAACA
82680477 CCAGAAAAGTAAATCA-TTT
1 CCAGAAAAGTAAATCATTTT
* * * *
82680496 CTAAAAAATTAAATTATTTT
1 CCAGAAAAGTAAATCATTTT
*
82680516 CTAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
82680536 CCAGAAA
1 CCAGAAA
82680543 TTATTTTCCA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 12 0.32
20 26 0.68
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:82680548 original size:14 final size:14
Alignment explanation
Indices: 82680526--82680563 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
82680516 CTAGAAAAGT
*
82680526 AAATCATTTTCCAG
1 AAATTATTTTCCAG
82680540 AAATTATTTTCCAG
1 AAATTATTTTCCAG
*
82680554 AAAATATTTT
1 AAATTATTTT
82680564 ACTGGCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.42
Consensus pattern (14 bp):
AAATTATTTTCCAG
Found at i:82685763 original size:46 final size:46
Alignment explanation
Indices: 82685633--82685763 Score: 199
Period size: 46 Copynumber: 2.8 Consensus size: 46
82685623 TGTAACCCGC
* * **
82685633 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
*
82685679 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* *
82685725 CCATAAGTGAACTCGGACTCAACTCAACAAGTTTGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
82685764 CCCAAATATC
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:82687207 original size:29 final size:30
Alignment explanation
Indices: 82687175--82687238 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 30
82687165 ACATTTTTAA
82687175 ATAAATAAATGGAGTTTAAAAT-AAGC-TAT
1 ATAAATAAATGGA-TTTAAAATGAAGCATAT
*
82687204 AT-AA-AAATTGATTTAAAATGAAGCAATAT
1 ATAAATAAATGGATTTAAAATGAAGC-ATAT
82687233 ATAAAT
1 ATAAAT
82687239 TTAAAATAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
26 8 0.28
27 10 0.34
28 2 0.07
29 7 0.24
30 2 0.07
ACGTcount: A:0.55, C:0.03, G:0.11, T:0.31
Consensus pattern (30 bp):
ATAAATAAATGGATTTAAAATGAAGCATAT
Found at i:82687219 original size:26 final size:27
Alignment explanation
Indices: 82687189--82687239 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
82687179 ATAAATGGAG
*
82687189 TTTAAAAT-AAGCTATATAAAAATTGA
1 TTTAAAATGAAGCAATATAAAAATTGA
*
82687215 TTTAAAATGAAGCAATATATAAATT
1 TTTAAAATGAAGCAATATAAAAATT
82687240 TAAAATAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.53, C:0.04, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTAAAATGAAGCAATATAAAAATTGA
Found at i:82692227 original size:2 final size:2
Alignment explanation
Indices: 82692220--82692250 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
82692210 ATTGATTTCA
*
82692220 TC TC TC TC TC TC TC TC TC TT TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
82692251 TTCTTCTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (2 bp):
TC
Found at i:82692251 original size:12 final size:12
Alignment explanation
Indices: 82692220--82692254 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
82692210 ATTGATTTCA
*
82692220 TCTCTCTCTCTC
1 TCTCTCTTTCTC
82692232 TCTCTCTTTCTC
1 TCTCTCTTTCTC
82692244 TCTCTCTTTCT
1 TCTCTCTTTCT
82692255 TCTTTATCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (12 bp):
TCTCTCTTTCTC
Found at i:82699959 original size:41 final size:41
Alignment explanation
Indices: 82699909--82700596 Score: 843
Period size: 41 Copynumber: 16.9 Consensus size: 41
82699899 AGTCGAGAAA
* * *
82699909 TAGCGGCGTTTTCGGAAAAACGCCGCCAAAAGTCCGAGAAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * *
82699950 TAGCGGCGTTTTT-CAAGAAACGCTGCC--AAGTCTGAGAAT
1 TAGCGGCGTTTTTGGAA-AAACGCCGCCAAAAGTCTGAGCAT
* * **
82699989 TCGCGGCATTTTTCCAAAAACGCCGCCAAAAGTCTGAGCAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * *
82700030 TAGCGGCATTTTTAGAAAAACGCCGCCAAAAGTCTGAGCGT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * * *
82700071 TAGCGGCGTTTTTAGAAAAACGCAGCCAAAGGTCTGAGCGT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
*
82700112 TAGCGGCGTTTTT-TACCAAAACGCCGCCAAAAGTCTGAGCAT
1 TAGCGGCGTTTTTGGA--AAAACGCCGCCAAAAGTCTGAGCAT
** *
82700154 TAGCGGCGTTTTTATAAACACGCCGCCAAAAGTCTGAGCAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
** *
82700195 TAGCGGCGTTTTTGGAAACGCGCCGCTAAAAGTCTGAGCAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* *
82700236 TAGCGGC-TTTTTGGAAAAGCGCCGCTAAAAGTCTGAGCAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * *
82700276 TAGCGGCGTTGTTGGAAAAACGCCGCTAAAAGTCTGAGAAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * *
82700317 TAGCGGCGTTGTTGAAAAAACGCCGCAAAAAGTCTGAGCAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * * *
82700358 TTGCGGCGTTTTTGG-AAAGCGCCGCTAAAAGTCTGAGAAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
*
82700398 TAGCGGCGTTTTTCGG-AAAACGCCCCCAAAA-TACTGAGCAT
1 TAGCGGCGTTTTT-GGAAAAACGCCGCCAAAAGT-CTGAGCAT
* *
82700439 TAGCGGCGTTTTTGGGAAAACGCCGCCAAAAGTCTGAGTAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* *
82700480 TAGCGGCGTTTTTGGGAAAACGCCGCCAAAAGTCTGAGTAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * *
82700521 TCGCGACGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGAAT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * * *
82700562 TAGCAGCGTTTTTGGAGAAACGCCGCTAAATGTCT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCT
82700597 TTTTTGAATT
Statistics
Matches: 581, Mismatches: 54, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
39 31 0.05
40 82 0.14
41 430 0.74
42 36 0.06
43 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (41 bp):
TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
Found at i:82700307 original size:122 final size:122
Alignment explanation
Indices: 82699909--82700596 Score: 823
Period size: 122 Copynumber: 5.6 Consensus size: 122
82699899 AGTCGAGAAA
* * ** *
82699909 TAGCGGCGTTTTCGGAAAAACGCCGCCAAAAGTCCGAGAATTAGCGGCGTTTTTCAAGAAACGCT
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGAATTAGCGGCGTTTTTGGA-AAACGCC
* * * **
82699974 GCC--AAGTCTGAGAATTCGCGGCATTTTTCCAAAAACGCCGCCAAAAGTCTGAGCAT
65 GCCAAAAGTCTGAGCATTAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * ** * *
82700030 TAGCGGCATTTTTAGAAAAACGCCGCCAAAAGTCTGAGCGTTAGCGGCGTTTTTAGAAAAACGCA
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGAATTAGCGGCGTTTTT-GGAAAACGCC
* * *
82700095 GCCAAAGGTCTGAGCGTTAGCGGCGTTTTT-TACCAAAACGCCGCCAAAAGTCTGAGCAT
65 GCCAAAAGTCTGAGCATTAGCGGCGTTTTTGGA--AAAACGCCGCCAAAAGTCTGAGCAT
** * * *
82700154 TAGCGGCGTTTTTATAAACACGCCGCCAAAAGTCTGAGCATTAGCGGCGTTTTTGGAAACGCGCC
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGAATTAGCGGCGTTTTTGGAAA-ACGCC
* * *
82700219 GCTAAAAGTCTGAGCATTAGCGGC-TTTTTGGAAAAGCGCCGCTAAAAGTCTGAGCAT
65 GCCAAAAGTCTGAGCATTAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * * *
82700276 TAGCGGCGTTGTTGGAAAAACGCCGCTAAAAGTCTGAGAATTAGCGGCGTTGTTGAAAAAACGCC
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGAATTAGCGGCGTTTTTG-GAAAACGCC
* * * * *
82700341 GCAAAAAGTCTGAGCATTTGCGGCGTTTTTGG-AAAGCGCCGCTAAAAGTCTGAGAAT
65 GCCAAAAGTCTGAGCATTAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* *
82700398 TAGCGGCGTTTTTCGG-AAAACGCCCCCAAAA-TACTGAGCATTAGCGGCGTTTTTGGGAAAACG
1 TAGCGGCGTTTTT-GGAAAAACGCCGCCAAAAGT-CTGAGAATTAGCGGCGTTTTT-GGAAAACG
* * *
82700461 CCGCCAAAAGTCTGAGTATTAGCGGCGTTTTTGGGAAAACGCCGCCAAAAGTCTGAGTAT
63 CCGCCAAAAGTCTGAGCATTAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
* * *
82700521 TCGCGACGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGAATTAGCAGCGTTTTTGGAGAAACGCC
1 TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGAATTAGCGGCGTTTTTGGA-AAACGCC
* *
82700586 GCTAAATGTCT
65 GCCAAAAGTCT
82700597 TTTTTGAATT
Statistics
Matches: 493, Mismatches: 58, Indels: 30
0.85 0.10 0.05
Matches are distributed among these distances:
121 58 0.12
122 210 0.43
123 124 0.25
124 101 0.20
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (122 bp):
TAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGAATTAGCGGCGTTTTTGGAAAACGCCG
CCAAAAGTCTGAGCATTAGCGGCGTTTTTGGAAAAACGCCGCCAAAAGTCTGAGCAT
Found at i:82700857 original size:7 final size:7
Alignment explanation
Indices: 82700748--82700892 Score: 53
Period size: 7 Copynumber: 19.7 Consensus size: 7
82700738 TTGGGTTTGA
82700748 GGTTTAG
1 GGTTTAG
*
82700755 TGTTTAG
1 GGTTTAG
*
82700762 TGTTTAG
1 GGTTTAG
* *
82700769 TGTTTAT
1 GGTTTAG
* *
82700776 GATCTTAA
1 GGT-TTAG
*
82700784 TGTTTAG
1 GGTTTAG
82700791 CGGTATTAAG
1 -GGT-TT-AG
*
82700801 GGTTTAT
1 GGTTTAG
82700808 GGTTTA-
1 GGTTTAG
82700814 GGTTTAAG
1 GGTTT-AG
* *
82700822 GGTTCAT
1 GGTTTAG
82700829 GGTTTATG
1 GGTTTA-G
** *
82700837 TTTTTAT
1 GGTTTAG
82700844 GGTTTAG
1 GGTTTAG
82700851 GGTTTAGG
1 GGTTTA-G
82700859 GGTTTAAG
1 GGTTT-AG
82700867 GG-TTAG
1 GGTTTAG
82700873 TGG-TTAGG
1 -GGTTTA-G
82700881 GGTTTAG
1 GGTTTAG
*
82700888 TGTTT
1 GGTTT
82700893 GTGATTTATA
Statistics
Matches: 105, Mismatches: 21, Indels: 24
0.70 0.14 0.16
Matches are distributed among these distances:
6 7 0.07
7 61 0.58
8 29 0.28
9 6 0.06
10 2 0.02
ACGTcount: A:0.17, C:0.02, G:0.32, T:0.48
Consensus pattern (7 bp):
GGTTTAG
Found at i:82700864 original size:22 final size:22
Alignment explanation
Indices: 82700839--82700936 Score: 62
Period size: 22 Copynumber: 4.5 Consensus size: 22
82700829 GGTTTATGTT
82700839 TTTATGGTTTAG-GGTTTAGGGG
1 TTTATGGTTTAGTGG-TTAGGGG
* *
82700861 TTTAAGGGTTAGTGGTTAGGGG
1 TTTATGGTTTAGTGGTTAGGGG
* **
82700883 TTTA-GTGTTT-GTGATTTA-TAG
1 TTTATG-GTTTAGTG-GTTAGGGG
*
82700904 TTTGTGGTTTAG-GGTTAGGGG
1 TTTATGGTTTAGTGGTTAGGGG
*
82700925 TTCATGGGTTTA
1 TTTAT-GGTTTA
82700937 TGTTTTTTTT
Statistics
Matches: 57, Mismatches: 12, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
20 3 0.05
21 17 0.30
22 35 0.61
23 2 0.04
ACGTcount: A:0.15, C:0.01, G:0.38, T:0.46
Consensus pattern (22 bp):
TTTATGGTTTAGTGGTTAGGGG
Found at i:82700888 original size:15 final size:16
Alignment explanation
Indices: 82700814--82700889 Score: 63
Period size: 15 Copynumber: 5.1 Consensus size: 16
82700804 TTATGGTTTA
*
82700814 GGTTTAAGGGTTCA-T
1 GGTTTAAGGGTTTAGT
* **
82700829 GGTTTATGTTTTTA-T
1 GGTTTAAGGGTTTAGT
*
82700844 GGTTT-AGGGTTTAGG
1 GGTTTAAGGGTTTAGT
82700859 GGTTTAAGGG-TTAGT
1 GGTTTAAGGGTTTAGT
*
82700874 GG-TTAGGGGTTTAGT
1 GGTTTAAGGGTTTAGT
82700889 G
1 G
82700890 TTTGTGATTT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
14 11 0.23
15 33 0.69
16 4 0.08
ACGTcount: A:0.16, C:0.01, G:0.38, T:0.45
Consensus pattern (16 bp):
GGTTTAAGGGTTTAGT
Found at i:82702165 original size:22 final size:22
Alignment explanation
Indices: 82702140--82702194 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
82702130 TATCTAGAAT
82702140 TTAGGGTTTAAT-GTTTATAAGG
1 TTAGGGTTTAATGGTTTA-AAGG
* *
82702162 TTAGGGATTT-ATGGTTTAGAGT
1 TTAGGG-TTTAATGGTTTAAAGG
82702184 TTAGGGTTTAA
1 TTAGGGTTTAA
82702195 GATTTAGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 3 0.11
22 17 0.61
23 8 0.29
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.45
Consensus pattern (22 bp):
TTAGGGTTTAATGGTTTAAAGG
Found at i:82702186 original size:14 final size:15
Alignment explanation
Indices: 82702162--82702208 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 15
82702152 GTTTATAAGG
* *
82702162 TTAGGGATTTATGGT
1 TTAGAGATTTAGGGT
82702177 TTAGAG-TTTAGGGT
1 TTAGAGATTTAGGGT
82702191 TTA-AGATTTAGGGT
1 TTAGAGATTTAGGGT
82702205 TTAG
1 TTAG
82702209 GGTATGATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 2 0.07
14 21 0.75
15 5 0.18
ACGTcount: A:0.23, C:0.00, G:0.32, T:0.45
Consensus pattern (15 bp):
TTAGAGATTTAGGGT
Found at i:82702200 original size:21 final size:20
Alignment explanation
Indices: 82702134--82702211 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 20
82702124 ATTTAGTATC
*
82702134 TAGAATTTAGGGTTTAATGTT
1 TAGAGTTTAGGGTTTAA-GTT
* * *
82702155 TATAAGGTTAGGGATTTATGGTT
1 TA-GAGTTTAGGG-TTTA-AGTT
82702178 TAGAGTTTAGGGTTTAAGATT
1 TAGAGTTTAGGGTTTAAG-TT
*
82702199 TAGGGTTTAGGGT
1 TAGAGTTTAGGGT
82702212 ATGATTTTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
20 1 0.02
21 20 0.44
22 15 0.33
23 9 0.20
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.44
Consensus pattern (20 bp):
TAGAGTTTAGGGTTTAAGTT
Found at i:82702209 original size:7 final size:7
Alignment explanation
Indices: 82702162--82702211 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
82702152 GTTTATAAGG
82702162 TTAGGGAT
1 TTAGGG-T
*
82702170 TTATGGT
1 TTAGGGT
*
82702177 TTAGAGT
1 TTAGGGT
82702184 TTAGGGT
1 TTAGGGT
* *
82702191 TTAAGAT
1 TTAGGGT
82702198 TTAGGGT
1 TTAGGGT
82702205 TTAGGGT
1 TTAGGGT
82702212 ATGATTTTGT
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
7 29 0.85
8 5 0.15
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (7 bp):
TTAGGGT
Found at i:82705451 original size:47 final size:47
Alignment explanation
Indices: 82705388--82705691 Score: 403
Period size: 47 Copynumber: 6.4 Consensus size: 47
82705378 CCCTTCGGGA
* * *
82705388 CTTATCACATCTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * *
82705435 TTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
82705482 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
82705529 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTC-GA
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
82705575 CTGAATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
82705623 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
82705672 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
82705692 GTACATCAAT
Statistics
Matches: 231, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
46 3 0.01
47 182 0.79
48 2 0.01
49 44 0.19
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:82708185 original size:25 final size:26
Alignment explanation
Indices: 82708157--82708212 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
82708147 AATTTTTTTA
* *
82708157 ATTAAT-CGAAATTTTTTTATCTAAT
1 ATTAATCCGAAATTTTTATATATAAT
* *
82708182 ATT-ATCCTAAATTTTTATATATTAT
1 ATTAATCCGAAATTTTTATATATAAT
82708207 ATTAAT
1 ATTAAT
82708213 TTAATTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 2 0.08
25 21 0.84
26 2 0.08
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.54
Consensus pattern (26 bp):
ATTAATCCGAAATTTTTATATATAAT
Found at i:82711224 original size:93 final size:93
Alignment explanation
Indices: 82711065--82711235 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
82711055 GCCCATAAGT
* * *
82711065 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
82711130 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGCTCGGATGCCTAGTTACATTTCAC
* *
82711158 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82711223 CGAGCTCGGATGC
66 CGAGCTCGGATGC
82711236 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATTTCAC
Found at i:82711232 original size:46 final size:46
Alignment explanation
Indices: 82711057--82711232 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
82711047 TGTAACCCGC
* *
82711057 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
82711103 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * * * *
82711153 --TTCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
82711196 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
82711233 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.58
47 28 0.27
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:82726122 original size:127 final size:130
Alignment explanation
Indices: 82725987--82726223 Score: 354
Period size: 134 Copynumber: 1.8 Consensus size: 130
82725977 TAAAAATATA
* *
82725987 TTTTTTTAGTCATTTTAAAGGAAAATTTAAATTTTT-AA-AACA-AATTTTTTTTTCCACTATTT
1 TTTTTTTAGTCATTTTAAAGGAAAATTTAAATTTTTAAATAAAATAATTTTTTTTTCAACTATTT
* *
82726049 CAAAATAAAAGCTTTGATATTTAAGAAAAGTATTTTTTTTTTTGGAAAAAGAGAAAGTTTAGTTG
66 CAAAATAAAAGCTTTGATATTTAAGAAAAATAGTTTTTTTTTTGGAAAAAGAGAAAGTTTAGTTG
* *
82726114 TTTTTTTAGTTATTTTAAAGGAAAATTTAAATTTTTAAAATAAAATTTTAATTTTTTTTTCAATT
1 TTTTTTTAGTCATTTTAAAGGAAAATTTAAATTTTT-AAATAAAA---TAATTTTTTTTTCAACT
*
82726179 ATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAGTTTTTTTT
62 ATTTCAAAATAAAAGCTTTGATATTTAAGAAAAATAGTTTTTTTT
82726224 AAAAAAGAGA
Statistics
Matches: 96, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
127 35 0.36
129 2 0.02
130 3 0.03
134 56 0.58
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.49
Consensus pattern (130 bp):
TTTTTTTAGTCATTTTAAAGGAAAATTTAAATTTTTAAATAAAATAATTTTTTTTTCAACTATTT
CAAAATAAAAGCTTTGATATTTAAGAAAAATAGTTTTTTTTTTGGAAAAAGAGAAAGTTTAGTTG
Found at i:82726151 original size:20 final size:20
Alignment explanation
Indices: 82726126--82726169 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
82726116 TTTTTAGTTA
*
82726126 TTTTAAAGGAAAATTTAAAT
1 TTTTAAAAGAAAATTTAAAT
* *
82726146 TTTTAAAATAAAATTTTAAT
1 TTTTAAAAGAAAATTTAAAT
82726166 TTTT
1 TTTT
82726170 TTTTCAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
TTTTAAAAGAAAATTTAAAT
Found at i:82726169 original size:21 final size:21
Alignment explanation
Indices: 82726117--82726170 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
82726107 TTAGTTGTTT
* *
82726117 TTTTAGTTATTTTAAAGGAAAA
1 TTTTAATT-TTTTAAAAGAAAA
* *
82726139 -TTTAAATTTTTAAAATAAAA
1 TTTTAATTTTTTAAAAGAAAA
82726159 TTTTAATTTTTT
1 TTTTAATTTTTT
82726171 TTTCAATTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.54
Consensus pattern (21 bp):
TTTTAATTTTTTAAAAGAAAA
Found at i:82726401 original size:146 final size:145
Alignment explanation
Indices: 82726115--82726404 Score: 340
Period size: 145 Copynumber: 2.0 Consensus size: 145
82726105 GTTTAGTTGT
* * * *
82726115 TTTTTTAGTTATTTTAAAGGAAAATTTAAATTTTTAAAATAAAATTTTAATTTTTTTTTCAATTA
1 TTTTTTAGTAATTTTAAAGGAAAATTTAAATTTTTAAAACAAAATTTTAA-TTCTTTTTCAACTA
*
82726180 TTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAGTTTTTTTTAAAAAAGAGAGTTTAGATTTT
65 TTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAGTTTTTTTTAAAAAAGAGACTTTAGATTTT
*
82726245 TAAAATAAAAAAAATG
130 TAAAAAAAAAAAAATG
* * *
82726261 TTTTTTAGTAATTTTAAAGGAAAAATTTAGATTTTTTAAAACAAAGTTTTGA-TCTTTTTCAACT
1 TTTTTTAGTAATTTTAAAGG-AAAATTTA-AATTTTTAAAACAAAATTTTAATTCTTTTTCAACT
** * * *
82726325 ATTTTGAAAT-AAAGTTTTGAT-TTGTAAGAAAAGTAGTGATTTTTTTAAAGAA-A-ACTTT-GA
64 ATTTCAAAATAAAAGCTTTGATCTT-TAAGAAAAATAGT--TTTTTTTAAAAAAGAGACTTTAGA
*
82726385 TTTTGTAAAGAAAAAAAAAT
126 TTTT-TAAAAAAAAAAAAAT
82726405 CCAGCCACCG
Statistics
Matches: 123, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
144 8 0.07
145 39 0.32
146 38 0.31
147 20 0.16
148 18 0.15
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.44
Consensus pattern (145 bp):
TTTTTTAGTAATTTTAAAGGAAAATTTAAATTTTTAAAACAAAATTTTAATTCTTTTTCAACTAT
TTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAGTTTTTTTTAAAAAAGAGACTTTAGATTTTT
AAAAAAAAAAAAATG
Found at i:82727331 original size:27 final size:27
Alignment explanation
Indices: 82727300--82727358 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
82727290 GTAGGTGTTG
* *
82727300 CATTTTAATGAAACCATAAGTTTTTTA
1 CATTTTAATAAAACCATAAGATTTTTA
82727327 CATTTTAATAAAACCATAAGATTTTTA
1 CATTTTAATAAAACCATAAGATTTTTA
82727354 CATTT
1 CATTT
82727359 GGATTTATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (27 bp):
CATTTTAATAAAACCATAAGATTTTTA
Found at i:82727469 original size:52 final size:52
Alignment explanation
Indices: 82727407--82727513 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
82727397 CCCTAGAAAA
82727407 ATTATAAATAATATGTAAGATATTTTTTTAGGGTTTTAAACTAATTCTAAAT
1 ATTATAAATAATATGTAAGATATTTTTTTAGGGTTTTAAACTAATTCTAAAT
* *
82727459 ATTATAAATAATATGTAATATATTTTTTTGGGGTTTTAAACTAATTCTAAAT
1 ATTATAAATAATATGTAAGATATTTTTTTAGGGTTTTAAACTAATTCTAAAT
82727511 ATT
1 ATT
82727514 GTATATTATT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (52 bp):
ATTATAAATAATATGTAAGATATTTTTTTAGGGTTTTAAACTAATTCTAAAT
Found at i:82729486 original size:27 final size:27
Alignment explanation
Indices: 82729456--82729633 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
82729446 ATATTGAGTC
* *
82729456 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
82729483 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
82729510 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
82729538 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
82729565 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
82729592 CGTACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
82729619 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82729634 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:82729599 original size:82 final size:81
Alignment explanation
Indices: 82729477--82729632 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
82729467 TGCTATATAA
* *
82729477 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
82729542 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
82729559 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGTACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
82729623 CACTTAGTGC
65 CACTTAGTGC
82729633 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:82735052 original size:40 final size:40
Alignment explanation
Indices: 82734997--82735074 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
82734987 AGGAATTTTT
82734997 GTAGGGAAATGATATATGTATGAGAGCATGTTCAAACTCA
1 GTAGGGAAATGATATATGTATGAGAGCATGTTCAAACTCA
*
82735037 GTAGGGAAATGATATATGTATGAGAGTATGTTCAAACT
1 GTAGGGAAATGATATATGTATGAGAGCATGTTCAAACT
82735075 GAATATTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (40 bp):
GTAGGGAAATGATATATGTATGAGAGCATGTTCAAACTCA
Found at i:82745092 original size:22 final size:22
Alignment explanation
Indices: 82745064--82745105 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
82745054 CTATACAAGT
*
82745064 AATATTACTTGAATAGTTATAA
1 AATATTACTTGAATAATTATAA
*
82745086 AATATTAGTTGAATAATTAT
1 AATATTACTTGAATAATTAT
82745106 GTCACTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.02, G:0.10, T:0.43
Consensus pattern (22 bp):
AATATTACTTGAATAATTATAA
Found at i:82747805 original size:28 final size:28
Alignment explanation
Indices: 82747774--82747845 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
82747764 TCGATATTTT
*
82747774 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* *
82747802 GCACACTAAGTGCCTTTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
82747830 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
82747846 ATTTGATTGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:82752225 original size:28 final size:28
Alignment explanation
Indices: 82752192--82752287 Score: 111
Period size: 28 Copynumber: 3.4 Consensus size: 28
82752182 CCGATCTTGT
**
82752192 ACACACAGTGCTTGGTTACGGAACTCGC
1 ACACACAGTGCTCAGTTACGGAACTCGC
*** * *
82752220 ACACACAGTGCCTCAACAACCGATCTCGC
1 ACACACAGTG-CTCAGTTACGGAACTCGC
*
82752249 ACACACAGTGCTCAGTTACGGAACTCAC
1 ACACACAGTGCTCAGTTACGGAACTCGC
82752277 ACACACAGTGC
1 ACACACAGTGC
82752288 CTATGTTCAC
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
28 33 0.61
29 21 0.39
ACGTcount: A:0.30, C:0.34, G:0.19, T:0.17
Consensus pattern (28 bp):
ACACACAGTGCTCAGTTACGGAACTCGC
Found at i:82752289 original size:57 final size:57
Alignment explanation
Indices: 82752159--82752289 Score: 190
Period size: 57 Copynumber: 2.3 Consensus size: 57
82752149 TGATCTCATT
** * * * **
82752159 TCACACACTTAGTGCCCCAACAACCGATCTTGTACACACAGTGCTTGGTTACGGAAC
1 TCACACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGGAAC
*
82752216 TCGCACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGGAAC
1 TCACACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGGAAC
82752273 TCACACACACAGTGCCT
1 TCACACACACAGTGCCT
82752290 ATGTTCACTT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 65 1.00
ACGTcount: A:0.29, C:0.35, G:0.17, T:0.19
Consensus pattern (57 bp):
TCACACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGGAAC
Found at i:82754300 original size:28 final size:28
Alignment explanation
Indices: 82754269--82754340 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
82754259 TTGATATTTT
*
82754269 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* *
82754297 GCACACTAAGTGCCATTCTTAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
82754325 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
82754341 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:82755470 original size:13 final size:12
Alignment explanation
Indices: 82755452--82755509 Score: 55
Period size: 13 Copynumber: 4.6 Consensus size: 12
82755442 TGTAACGGGG
82755452 AAGAAAAGAAGGA
1 AAGAAAAGAA-GA
82755465 AAGAAAGGAGAAGA
1 AAGAAA--AGAAGA
*
82755479 AAAAAGAAGAAGA
1 AAGAA-AAGAAGA
*
82755492 AAGAAAAAAAGA
1 AAGAAAAGAAGA
82755504 AA-AAAA
1 AAGAAAA
82755510 AACGTATGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
11 4 0.10
12 8 0.21
13 16 0.41
14 6 0.15
15 5 0.13
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAGAAAAGAAGA
Found at i:82755486 original size:17 final size:19
Alignment explanation
Indices: 82755464--82755505 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
82755454 GAAAAGAAGG
*
82755464 AAAGAAAGGAG-AAG-AAA
1 AAAGAAAGAAGAAAGAAAA
82755481 AAAG-AAGAAGAAAGAAAA
1 AAAGAAAGAAGAAAGAAAA
82755499 AAAGAAA
1 AAAGAAA
82755506 AAAAAACGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 5 0.24
17 7 0.33
18 7 0.33
19 2 0.10
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAAGAAAGAAGAAAGAAAA
Found at i:82755506 original size:23 final size:26
Alignment explanation
Indices: 82755452--82755506 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 26
82755442 TGTAACGGGG
* *
82755452 AAGAAAAGAAGGAAAGAAAGGAGAAG
1 AAGAAAAGAAGGAAAGAAAGGAAAAA
82755478 AA-AAAAGAA-G-AAGAAA-GAAAAA
1 AAGAAAAGAAGGAAAGAAAGGAAAAA
82755500 AAGAAAA
1 AAGAAAA
82755507 AAAAACGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 6 0.23
23 10 0.38
24 1 0.04
25 7 0.27
26 2 0.08
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (26 bp):
AAGAAAAGAAGGAAAGAAAGGAAAAA
Found at i:82756184 original size:89 final size:91
Alignment explanation
Indices: 82756072--82756259 Score: 267
Period size: 91 Copynumber: 2.1 Consensus size: 91
82756062 TTAGTGTTTT
* **
82756072 GTGTTTTGTGATTTATTAGTAATGTAAATTCTTT-TTAAA-AATGTTATAGTTATTTTGTTAGTA
1 GTGTTTTGTGATTTATTAATAATGT-AATT-TTTAAAAAATAATGTTATAGTTATTTTGTTAGTA
82756135 ATTTATGATTA-GTT-TATAAATTGTTA
64 ATTTATGATTAGGTTATATAAATTGTTA
* *
82756161 GTGTTTTGTGATTTTTTAATAATGTAATTTTTAAAAAAAATAATTTTATAGTTATTTTGTTAGTA
1 GTGTTTTGTGATTTATTAATAATGTAATTTTT--AAAAAATAATGTTATAGTTATTTTGTTAGTA
82756226 ATTTATGATTAGGTTATATAAATTGTTA
64 ATTTATGATTAGGTTATATAAATTGTTA
82756254 GTGTTT
1 GTGTTT
82756260 ATAGTTTAGT
Statistics
Matches: 88, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
87 3 0.03
88 4 0.05
89 23 0.26
90 3 0.03
91 34 0.39
92 3 0.03
93 18 0.20
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.54
Consensus pattern (91 bp):
GTGTTTTGTGATTTATTAATAATGTAATTTTTAAAAAATAATGTTATAGTTATTTTGTTAGTAAT
TTATGATTAGGTTATATAAATTGTTA
Found at i:82756845 original size:21 final size:21
Alignment explanation
Indices: 82756811--82756854 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
82756801 AAATCTCTAC
*
82756811 AATTTCTCCCTAAAGCTCTCA
1 AATTTCTCACTAAAGCTCTCA
* **
82756832 AATTTCTCATTAAATTTCTCA
1 AATTTCTCACTAAAGCTCTCA
82756853 AA
1 AA
82756855 GCTCTTTATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTCTCACTAAAGCTCTCA
Found at i:82758017 original size:7 final size:7
Alignment explanation
Indices: 82758005--82758030 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
82757995 TAATCGTTTC
82758005 GTATTTA
1 GTATTTA
82758012 GTATTTA
1 GTATTTA
82758019 GTATTTA
1 GTATTTA
82758026 GTATT
1 GTATT
82758031 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:82758575 original size:30 final size:30
Alignment explanation
Indices: 82758530--82758591 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
82758520 GACACAGGCT
82758530 CATCAACAGCACCCACACAATCACCT-GGCC
1 CATCAACAGCACCCACACAATCA-CTGGGCC
* *
82758560 CATCAATAGCGCCCACACAATCACTGGGCC
1 CATCAACAGCACCCACACAATCACTGGGCC
82758590 CA
1 CA
82758592 ATACCTCAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.32, C:0.44, G:0.13, T:0.11
Consensus pattern (30 bp):
CATCAACAGCACCCACACAATCACTGGGCC
Found at i:82758667 original size:18 final size:18
Alignment explanation
Indices: 82758644--82758682 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
82758634 ATGTCAGGTG
* *
82758644 TGTATCCTAGCCCTTATA
1 TGTATCCTAACCCATATA
82758662 TGTATCCTAACCCATATA
1 TGTATCCTAACCCATATA
82758680 TGT
1 TGT
82758683 TCCCTTTTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.38
Consensus pattern (18 bp):
TGTATCCTAACCCATATA
Found at i:82759102 original size:30 final size:32
Alignment explanation
Indices: 82759067--82759139 Score: 78
Period size: 31 Copynumber: 2.3 Consensus size: 32
82759057 TATTGTTTTA
82759067 TTTAATAAAAAAGAAGTTGTTT-TTTTAT-AT
1 TTTAATAAAAAAGAAGTTGTTTATTTTATAAT
* ** * *
82759097 TTTAATAGTAAATTAATTTTTTTATTTTATAAT
1 TTTAATA-AAAAAGAAGTTGTTTATTTTATAAT
82759130 TTTAATAAAA
1 TTTAATAAAA
82759140 TATAAGTTCT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
30 7 0.21
31 10 0.29
32 8 0.24
33 9 0.26
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.53
Consensus pattern (32 bp):
TTTAATAAAAAAGAAGTTGTTTATTTTATAAT
Found at i:82762340 original size:126 final size:127
Alignment explanation
Indices: 82762108--82762484 Score: 471
Period size: 126 Copynumber: 3.0 Consensus size: 127
82762098 GGCCAAGTAT
* * * * * * * *
82762108 GAACTACTGTAG-AAAAATAGCGTCCATATGG--GATTTTTTT-TAGAAATTTTGATGACATTAC
1 GAACTACTATAGCAAAAA-AGCGTCCACATGGTAGCTTTTTTTCTA-TATTTTTGCTGACAGTGC
* * *
82762169 ATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCATAAACATCTTCTCAAAATTATTTTTTTAG
64 ATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
* * *
82762233 GAACTACTGTAGCAAAAGAGCGTCTACATGGTAGC-TTTTTTCTATATTTTTGCTGACAGTGCAT
1 GAACTACTATAGCAAAAAAGCGTCCACATGGTAGCTTTTTTTCTATATTTTTGCTGACAGTGCAT
* *
82762297 CCTGCTTGAAGTGTTTTTGACACTCTTTGTTCAGAAACGTCTTCTCAAAATTA-TTTTTCAG
66 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
* * * * *
82762358 GAACTACTATAGCAAAAAAGTGTCCACTTGGTAGCTTTTTTTCTGTATTTTTGCTAATAGTGCAT
1 GAACTACTATAGCAAAAAAGCGTCCACATGGTAGCTTTTTTTCTATATTTTTGCTGACAGTGCAT
* * *
82762423 CCTGCTTAAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTTTCAAAATTA-TTTTTCAG
66 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
82762484 G
1 G
82762485 GTGAAAATAA
Statistics
Matches: 220, Mismatches: 27, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
125 60 0.27
126 157 0.71
127 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (127 bp):
GAACTACTATAGCAAAAAAGCGTCCACATGGTAGCTTTTTTTCTATATTTTTGCTGACAGTGCAT
CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
Found at i:82762649 original size:34 final size:34
Alignment explanation
Indices: 82762611--82762717 Score: 141
Period size: 34 Copynumber: 3.3 Consensus size: 34
82762601 GCCCTAGAAA
82762611 CCTAATTTACTTAATCTATTTAAAAACCAAAAAC
1 CCTAATTTACTTAATCTATTTAAAAACCAAAAAC
* * * *
82762645 CCTAA--T--TTAATTTATTTTAAACCCTAAAAC
1 CCTAATTTACTTAATCTATTTAAAAACCAAAAAC
*
82762675 CCTAATTTACTTAATCTATTTAAAAACCATAAAC
1 CCTAATTTACTTAATCTATTTAAAAACCAAAAAC
82762709 CCTAATTTA
1 CCTAATTTA
82762718 AACGTTTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
30 25 0.42
32 2 0.03
34 33 0.55
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (34 bp):
CCTAATTTACTTAATCTATTTAAAAACCAAAAAC
Found at i:82762649 original size:64 final size:64
Alignment explanation
Indices: 82762576--82762718 Score: 236
Period size: 64 Copynumber: 2.2 Consensus size: 64
82762566 CCCAAAACTC
82762576 AAAACCCTAATTTAATTTA-TCTAAAGCCCTAGAAA-CCTAATTTACTTAATCTATTTAAAAACC
1 AAAACCCTAATTTAATTTATTCTAAA-CCCTA-AAACCCTAATTTACTTAATCTATTTAAAAACC
82762639 A
64 A
*
82762640 AAAACCCTAATTTAATTTATTTTAAACCCTAAAACCCTAATTTACTTAATCTATTTAAAAACCA
1 AAAACCCTAATTTAATTTATTCTAAACCCTAAAACCCTAATTTACTTAATCTATTTAAAAACCA
*
82762704 TAAACCCTAATTTAA
1 AAAACCCTAATTTAA
82762719 ACGTTTTTTA
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
63 3 0.04
64 67 0.89
65 5 0.07
ACGTcount: A:0.44, C:0.20, G:0.01, T:0.34
Consensus pattern (64 bp):
AAAACCCTAATTTAATTTATTCTAAACCCTAAAACCCTAATTTACTTAATCTATTTAAAAACCA
Found at i:82762655 original size:30 final size:30
Alignment explanation
Indices: 82762621--82762718 Score: 115
Period size: 30 Copynumber: 3.1 Consensus size: 30
82762611 CCTAATTTAC
82762621 TTAATCTATTTAAAAACCAAAAACCCTAAT
1 TTAATCTATTTAAAAACCAAAAACCCTAAT
* * * *
82762651 TTAATTTATTTTAAACCCTAAAACCCTAATTT
1 TTAATCTATTTAAAAACCAAAAACCCTAA--T
*
82762683 ACTTAATCTATTTAAAAACCATAAACCCTAAT
1 --TTAATCTATTTAAAAACCAAAAACCCTAAT
82762715 TTAA
1 TTAA
82762719 ACGTTTTTTA
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
30 29 0.53
32 2 0.04
34 24 0.44
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36
Consensus pattern (30 bp):
TTAATCTATTTAAAAACCAAAAACCCTAAT
Found at i:82765429 original size:43 final size:43
Alignment explanation
Indices: 82765381--82765508 Score: 121
Period size: 43 Copynumber: 3.2 Consensus size: 43
82765371 GGTTTTTTTT
82765381 TTTTTTTGCAATTTAAATAGTCAACTTTATATTTATGTAATTA
1 TTTTTTTGCAATTTAAATAGTCAACTTTATATTTATGTAATTA
* ** * *
82765424 CTTTTTCACAATTT---TAGT-TA-TTAAT-TTTA-G-AATT-
1 TTTTTTTGCAATTTAAATAGTCAACTTTATATTTATGTAATTA
* *
82765458 TTTTTTGTGCAATTTAAATAGTCAACTTTGTATTTATGTAATGA
1 TTTTTT-TGCAATTTAAATAGTCAACTTTATATTTATGTAATTA
82765502 TTTTTTT
1 TTTTTTT
82765509 CGCTATTTTA
Statistics
Matches: 63, Mismatches: 12, Indels: 20
0.66 0.13 0.21
Matches are distributed among these distances:
34 5 0.08
35 10 0.16
36 1 0.02
37 4 0.06
38 8 0.13
39 2 0.03
40 7 0.11
41 4 0.06
42 1 0.02
43 15 0.24
44 6 0.10
ACGTcount: A:0.29, C:0.07, G:0.09, T:0.55
Consensus pattern (43 bp):
TTTTTTTGCAATTTAAATAGTCAACTTTATATTTATGTAATTA
Found at i:82765526 original size:79 final size:77
Alignment explanation
Indices: 82765378--82765567 Score: 249
Period size: 78 Copynumber: 2.5 Consensus size: 77
82765368 TGAGGTTTTT
* * *
82765378 TTTTTTTTTTGCAATTTAAATAGTCAACTTTATATTTATGTAATTACTTTTTCACAATTTTAGTT
1 TTTTTTTTGTGCAATTTAAATAGTCAACTTTGTATTTATGTAATGACTTTTTCACAATTTTAGTT
82765443 ATTAATTTTAGAA
66 ATTAATTTTAG-A
* * *
82765456 TTTTTTTTGTGCAATTTAAATAGTCAACTTTGTATTTATGTAATGATTTTTTTCGCTATTTTAGT
1 TTTTTTTTGTGCAATTTAAATAGTCAACTTTGTATTTATGTAATGA-CTTTTTCACAATTTTAGT
*
82765521 TATTAATTTTAGG
65 TATTAATTTTAGA
** * *
82765534 GGTTTTTTGT--AATTTAAATAATAAACTTTGTATT
1 TTTTTTTTGTGCAATTTAAATAGTCAACTTTGTATT
82765568 ATTTACATAA
Statistics
Matches: 100, Mismatches: 11, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
76 22 0.22
78 51 0.51
79 27 0.27
ACGTcount: A:0.28, C:0.06, G:0.10, T:0.55
Consensus pattern (77 bp):
TTTTTTTTGTGCAATTTAAATAGTCAACTTTGTATTTATGTAATGACTTTTTCACAATTTTAGTT
ATTAATTTTAGA
Found at i:82768552 original size:19 final size:19
Alignment explanation
Indices: 82768498--82768552 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
82768488 ATTCAAAAGC
* *
82768498 TAACAAAATTAATAAC--C
1 TAACAAAATTACTAACAAA
* **
82768515 TAACAAAATAACTTTCAAA
1 TAACAAAATTACTAACAAA
82768534 TAACAAAATTACTAACAAA
1 TAACAAAATTACTAACAAA
82768553 ACTCTCTATT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
17 12 0.43
19 16 0.57
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (19 bp):
TAACAAAATTACTAACAAA
Found at i:82777913 original size:10 final size:10
Alignment explanation
Indices: 82777886--82777945 Score: 68
Period size: 10 Copynumber: 6.0 Consensus size: 10
82777876 TTAAATTTTA
82777886 AAAGATAAAT
1 AAAGATAAAT
82777896 ACAA-ATAAAT
1 A-AAGATAAAT
*
82777906 AAAGATAATT
1 AAAGATAAAT
*
82777916 AAAGATAATT
1 AAAGATAAAT
*
82777926 GAAGATAAAT
1 AAAGATAAAT
*
82777936 AAAAATAAAT
1 AAAGATAAAT
82777946 CCTAAATTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:82787972 original size:39 final size:39
Alignment explanation
Indices: 82787861--82787974 Score: 115
Period size: 40 Copynumber: 2.9 Consensus size: 39
82787851 ATCGTCAGAT
*
82787861 CAACCG-AACACACCAGACAGAAGCTCATAAGAGCTGATC
1 CAACCGAAACACA-CAAACAGAAGCTCATAAGAGCTGATC
* * * * *
82787900 CAATCGAAATACGCTAAACAGAAGCTCACAAGAGCTGGTC
1 CAACCGAAACACAC-AAACAGAAGCTCATAAGAGCTGATC
* *
82787940 CACCCGAAACACA-ACAATAGAAGCTCATAAGAGCT
1 CAACCGAAACACACA-AACAGAAGCTCATAAGAGCT
82787975 TAACAGAAGC
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
38 1 0.02
39 24 0.40
40 35 0.58
ACGTcount: A:0.42, C:0.28, G:0.18, T:0.12
Consensus pattern (39 bp):
CAACCGAAACACACAAACAGAAGCTCATAAGAGCTGATC
Found at i:82791229 original size:78 final size:79
Alignment explanation
Indices: 82791147--82791308 Score: 290
Period size: 78 Copynumber: 2.0 Consensus size: 79
82791137 ATGCAAACTG
82791147 ATACGTATGGTCAAAGTCATAATAATAATACATATCACAAACCAA-CTTCTTATACATGCCACTC
1 ATACGTATGGTCAAAGTCATAATAATAATACATATCACAAACCAATCTTCTTATACATGCCACTC
82791211 ACTTGATATTTCTA
66 ACTTGATATTTCTA
*
82791225 ATACGTATGGTCAAAGTCATAATAATAATACATATCACAAACCAACTTCTTCTTATACATGCCAT
1 ATACGTATGGTCAAAGTCATAATAATAATACATATCACAAACCAA--TCTTCTTATACATGCCAC
82791290 TCACTTGATATTTCTA
64 TCACTTGATATTTCTA
82791306 ATA
1 ATA
82791309 TTTGAATTAA
Statistics
Matches: 80, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
78 45 0.56
81 35 0.44
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.33
Consensus pattern (79 bp):
ATACGTATGGTCAAAGTCATAATAATAATACATATCACAAACCAATCTTCTTATACATGCCACTC
ACTTGATATTTCTA
Found at i:82792368 original size:49 final size:50
Alignment explanation
Indices: 82792312--82792536 Score: 258
Period size: 49 Copynumber: 4.5 Consensus size: 50
82792302 CTGGTACGCA
*
82792312 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAATTATTC-GTTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGATCCAATTA-TCGGGTACACG
* * * ** * * *
82792361 TAGTAGCCTGCACTTAGTACTAAACATGTGATCTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGATCCAATTATCGGGTACACG
* * * * *
82792411 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGATCCAA-TTATCGGGTACACG
* *
82792462 TAGTAGCTTGCACTTAGTACTACACATGCGA-CCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGATCCAATTATCGGGTACACG
*
82792511 TAGTAGCTTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
82792537 CGTGACCTCA
Statistics
Matches: 149, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
49 68 0.46
50 46 0.31
51 35 0.23
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGATCCAATTATCGGGTACACG
Found at i:82792536 original size:100 final size:99
Alignment explanation
Indices: 82792312--82792543 Score: 279
Period size: 100 Copynumber: 2.3 Consensus size: 99
82792302 CTGGTACGCA
* * * *
82792312 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGTTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACATAGTAGCCTGCACTTA
* * * *
82792377 GTACTAAACATGTGATCTAACCATCTGATACATG
66 GTACTAAACATGCGATCCAACCATCCGATACACG
* * *
82792411 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTA-TCGGGTACGCATAGTAGCTTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATTC-GGTACACATAGTAGCCTGCAC
* ** *
82792475 TTAGTACTACACATGCGA-CCAATTATCCGGTACACG
63 TTAGTACTAAACATGCGATCCAACCATCCGATACACG
*
82792511 TAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
82792544 TCACAATAAA
Statistics
Matches: 113, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
99 30 0.27
100 47 0.42
101 36 0.32
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACATAGTAGCCTGCACTTA
GTACTAAACATGCGATCCAACCATCCGATACACG
Found at i:82792820 original size:27 final size:27
Alignment explanation
Indices: 82792790--82792843 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
82792780 TCATACAACC
*
82792790 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAATAATAATTTAACATTCAATT
* **
82792817 CATGTGATAATAATTTGCCATTCAATT
1 CATGTAATAATAATTTAACATTCAATT
82792844 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (27 bp):
CATGTAATAATAATTTAACATTCAATT
Found at i:82797869 original size:35 final size:34
Alignment explanation
Indices: 82797796--82797883 Score: 104
Period size: 35 Copynumber: 2.5 Consensus size: 34
82797786 ATAGTTCAAT
* ** *
82797796 TTCAATATAACATCACATATGGCCAAATATGCACA
1 TTCAATATAAC-TCACATATGACCAAATACACAAA
*
82797831 TTCAAAATAACTTCACATATGACCAAATACACAAA
1 TTCAATATAAC-TCACATATGACCAAATACACAAA
82797866 TTCAATATAAACTCACAT
1 TTCAATAT-AACTCACAT
82797884 GTAATCAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 42 0.93
36 3 0.07
ACGTcount: A:0.47, C:0.23, G:0.05, T:0.26
Consensus pattern (34 bp):
TTCAATATAACTCACATATGACCAAATACACAAA
Found at i:82813184 original size:43 final size:43
Alignment explanation
Indices: 82813123--82813208 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
82813113 GGGTAAGAAA
82813123 TTAGATGTGAAAACCAATGGAACCCAATAACATGATCCATCTT
1 TTAGATGTGAAAACCAATGGAACCCAATAACATGATCCATCTT
82813166 TTAGATGTGAAAACCAATGGAACCCAATAACATGATCCATCTT
1 TTAGATGTGAAAACCAATGGAACCCAATAACATGATCCATCTT
82813209 CATTTAAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.26
Consensus pattern (43 bp):
TTAGATGTGAAAACCAATGGAACCCAATAACATGATCCATCTT
Found at i:82813278 original size:25 final size:26
Alignment explanation
Indices: 82813250--82813298 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
82813240 CAACAAAAAT
* *
82813250 AAAATCTAGTCTAAAAA-GAAAAGGG
1 AAAACCTAATCTAAAAATGAAAAGGG
82813275 AAAACCTAATCTAAAAATGAAAAG
1 AAAACCTAATCTAAAAATGAAAAG
82813299 AAAAGAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.59, C:0.10, G:0.14, T:0.16
Consensus pattern (26 bp):
AAAACCTAATCTAAAAATGAAAAGGG
Found at i:82821369 original size:46 final size:45
Alignment explanation
Indices: 82821224--82821407 Score: 185
Period size: 46 Copynumber: 4.0 Consensus size: 45
82821214 GGTTATTATG
* * *
82821224 GGCTAGTGTAAGACGTGTCTAGGACATGCATCGG-T-GACATTATGA
1 GGCTAGTGTAAGACATGTCTAGGACATGCATCGGCTCGAGA-TGT-A
* * * *
82821269 GAGCCT-GTGTAAGACCATGTCTGGGACATGGCGTCGGCATCGAGGTGAA
1 G-G-CTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGC-TCGAGATGTA
* *
82821318 TGCTAGTGTAAGACATGTCCAGGACATGCATCGGCCTCGAGATGTA
1 GGCTAGTGTAAGACATGTCTAGGACATGCATCGG-CTCGAGATGTA
82821364 GGCTAGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATG
1 GGCTAGTGTAAGACATGTCTAGGACATGCATCGGCT-CGAGATG
82821408 ATTGTCAGTG
Statistics
Matches: 114, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
45 3 0.03
46 62 0.54
47 29 0.25
48 15 0.13
49 1 0.01
50 2 0.02
51 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (45 bp):
GGCTAGTGTAAGACATGTCTAGGACATGCATCGGCTCGAGATGTA
Found at i:82828000 original size:18 final size:18
Alignment explanation
Indices: 82827977--82828012 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
82827967 ATTTTATAAA
82827977 AAATTCAAAATTTTGATT
1 AAATTCAAAATTTTGATT
* *
82827995 AAATTCGACATTTTGATT
1 AAATTCAAAATTTTGATT
82828013 TTCATAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.44
Consensus pattern (18 bp):
AAATTCAAAATTTTGATT
Found at i:82831236 original size:17 final size:19
Alignment explanation
Indices: 82831192--82831236 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 19
82831182 ACCATTTTGC
* *
82831192 ATAAGTTGTAAAATAAATG
1 ATAAATTGTGAAATAAATG
82831211 ATAAA-TGTGAAAT-AATG
1 ATAAATTGTGAAATAAATG
82831228 A-AAATTGTG
1 ATAAATTGTG
82831237 GGCTACTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 3 0.13
17 9 0.39
18 7 0.30
19 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.31
Consensus pattern (19 bp):
ATAAATTGTGAAATAAATG
Found at i:82831813 original size:20 final size:21
Alignment explanation
Indices: 82831788--82831843 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
82831778 TGTCATAAAG
*
82831788 ACCACACGAGCAT-TTACCCT
1 ACCACACGGGCATGTTACCCT
*
82831808 ACCACACGGGCGTGTTACCCT
1 ACCACACGGGCATGTTACCCT
*
82831829 TCCACACGGGCATGT
1 ACCACACGGGCATGT
82831844 GCCCTGTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 11 0.35
21 20 0.65
ACGTcount: A:0.23, C:0.38, G:0.20, T:0.20
Consensus pattern (21 bp):
ACCACACGGGCATGTTACCCT
Found at i:82836248 original size:44 final size:44
Alignment explanation
Indices: 82836183--82836268 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
82836173 TTGATATCTC
* *
82836183 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
* * *
82836227 AAAGTCCAT-GTTCATAACATGGCATTTAATGAGGAATTGACG
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGACG
82836269 ATTAAGGATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
43 3 0.08
44 33 0.92
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:82836464 original size:47 final size:47
Alignment explanation
Indices: 82836406--82836527 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
82836396 GCATTGGCAC
*
82836406 TAAGATAAGGATACCATGTAAGACCATGTTTGAAACGTGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGAAACGTGGAATTTGG
* *
82836453 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACGTGGAATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGAAACGTGGAATTTGG
*
82836500 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
82836528 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.26
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGAAACGTGGAATTTGG
Found at i:82836688 original size:53 final size:54
Alignment explanation
Indices: 82836506--82836810 Score: 368
Period size: 55 Copynumber: 5.6 Consensus size: 54
82836496 TTGGTAAGAT
* * *
82836506 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
82836560 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
82836615 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
82836668 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAATTACTATAAGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * *
82836724 AAGG-T-CCAATGTAAGATCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACC-ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
82836776 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
82836811 ATGGTAAGTT
Statistics
Matches: 214, Mismatches: 28, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
52 8 0.04
53 71 0.33
54 47 0.22
55 80 0.37
56 8 0.04
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:82836705 original size:108 final size:108
Alignment explanation
Indices: 82836514--82836810 Score: 495
Period size: 108 Copynumber: 2.7 Consensus size: 108
82836504 ATAAGGATAT
* * * *
82836514 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
* *
82836579 ATGTCAAGACATGACATTGATGAGTTACTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAATTACTATAAGGCAAAGGTCC
82836623 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
*
82836688 TGTCAAGACATGGCATTGATGAATTACTATAAGGTAAAGGTCC
66 TGTCAAGACATGGCATTGATGAATTACTATAAGGCAAAGGTCC
* * *
82836731 AATGTAAGATCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
82836796 TGTCAAGACATGGCA
66 TGTCAAGACATGGCA
82836811 ATGGTAAGTT
Statistics
Matches: 178, Mismatches: 10, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
108 142 0.80
109 36 0.20
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAATTACTATAAGGCAAAGGTCC
Found at i:82836822 original size:53 final size:54
Alignment explanation
Indices: 82836506--82836821 Score: 347
Period size: 53 Copynumber: 5.9 Consensus size: 54
82836496 TTGGTAAGAT
* *
82836506 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
82836560 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
82836615 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* *
82836668 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAA-TTACTATAAGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGAT-AAGTT-CTATAAGG-C
* * * *
82836724 AAGG-T-CCAATGTAAGATCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACC-ATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
82836776 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
82836822 AAAAAGGAAA
Statistics
Matches: 221, Mismatches: 30, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
52 8 0.04
53 78 0.35
54 49 0.22
55 78 0.35
56 8 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:82841198 original size:19 final size:18
Alignment explanation
Indices: 82841165--82841206 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
82841155 TTTGCATAAG
*
82841165 TTGTAAAATAGATGATAAA
1 TTGTGAAATAGATGA-AAA
82841184 TGTGTGAAATA-ATGAAAA
1 T-TGTGAAATAGATGAAAA
82841202 TTGTG
1 TTGTG
82841207 GGTTGCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.19
18 4 0.19
19 5 0.24
20 8 0.38
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.33
Consensus pattern (18 bp):
TTGTGAAATAGATGAAAA
Found at i:82841778 original size:48 final size:46
Alignment explanation
Indices: 82841672--82842026 Score: 217
Period size: 46 Copynumber: 7.5 Consensus size: 46
82841662 TATGTGTGCT
* *
82841672 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--AGCATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAG-AT-ATAAGCC
* *
82841718 AGTGTAAAACATGTATGGGACATGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA--TAAGCC
* * * * *
82841766 AGTGTAAGACATGTCTGGGACATACATCGGCATTGAGACTA-CAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-TATAAGCC
* * *
82841812 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGCGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT--AAGCC
* * * * * * * *
82841860 AGTGTAAGACCTATCTGGGACATGGCGTCAG-CTTGTGGA-GT--GTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG-AGATATAAGCC
* * * *
82841904 AGTGTAAGACCTGTCTGGGACATGGCGTCGACAC-CGATAGATGAGAA-CC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCG--AGAT-ATAAGCC
* * **
82841953 AGTGTAAGACCTGTATGGGACATGGCATCGGCCTCGCTATATGAAAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT--AAGCC
82842002 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
82842027 GAGTCGGCAT
Statistics
Matches: 243, Mismatches: 43, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
44 29 0.12
45 5 0.02
46 72 0.30
47 4 0.02
48 68 0.28
49 53 0.22
50 12 0.05
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCC
Found at i:82841824 original size:94 final size:94
Alignment explanation
Indices: 82841672--82841882 Score: 266
Period size: 94 Copynumber: 2.2 Consensus size: 94
82841662 TATGTGTGCT
* *
82841672 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGCATGAGAGCCAGTGTAAAACATGTATGGG
1 AGTGTAAGACATGTCTGGGACATACATCAGCCATAGCATGACAGCCAGTGTAAAACATGTATGGG
**
82841737 ACATGCATCGGCCTCGAGATATTTAAGCC
66 ACATGCATCGGCCTCGAGATATACAAGCC
* * * *
82841766 AGTGTAAGACATGTCTGGGACATACATC-GGCATTGAG-ACT-ACAGCTAGTGTAAGACATGTTT
1 AGTGTAAGACATGTCTGGGACATACATCAGCCA-T-AGCA-TGACAGCCAGTGTAAAACATGTAT
* *
82841828 GGGACATGCATCGGCCTCGCGATATACAAGCT
63 GGGACATGCATCGGCCTCGAGATATACAAGCC
* *
82841860 AGTGTAAGACCTATCTGGGACAT
1 AGTGTAAGACATGTCTGGGACAT
82841883 GGCGTCAGCT
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
93 3 0.03
94 96 0.94
95 3 0.03
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATACATCAGCCATAGCATGACAGCCAGTGTAAAACATGTATGGG
ACATGCATCGGCCTCGAGATATACAAGCC
Found at i:82841972 original size:49 final size:49
Alignment explanation
Indices: 82841672--82842032 Score: 173
Period size: 48 Copynumber: 7.6 Consensus size: 49
82841662 TATGTGTGCT
* * * *
82841672 AGTGTAAGACATGTCTGGGACAT-GCATC-AGC-C-ATAGCATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCGACCTCGATAG-ATGAAAGCC
* * * * * * * **
82841718 AGTGTAAAACATGTATGGGACAT-GCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCGACCTCGATAGATGAAAGCC
* * * * * * * *
82841766 AGTGTAAGACATGTCTGGGACAT-ACATCGGCATTG--AGACT-ACAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCGTCGACCTCGATAGA-TGAAAGCC
* * * * ** * *
82841812 AGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCGCGATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCGTCGACCTCGATAGATGA-AAGCC
* * * ** *
82841860 AGTGTAAGACCTATCTGGGACATGGCGTC-AGCTTG-T-G--GAGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCGACCTCGATAGATGAAAGCC
82841904 AGTGTAAGACCTGTCTGGGACATGGCGTCGACAC-CGATAGATGAGAA-CC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCGAC-CTCGATAGATGA-AAGCC
* * * * *
82841953 AGTGTAAGACCTGTATGGGACATGGCATCGGCCTCGCTATATGAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCGACCTCGATAGATGAAAGCC
*
82842002 AGTGTAAGACCATGTCTGGGACATGGAGTCG
1 AGTGTAAGACC-TGTCTGGGACATGGCGTCG
82842033 GCATCTTAAC
Statistics
Matches: 245, Mismatches: 51, Indels: 34
0.74 0.15 0.10
Matches are distributed among these distances:
44 29 0.12
45 3 0.01
46 64 0.26
47 5 0.02
48 69 0.28
49 59 0.24
50 16 0.07
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCGTCGACCTCGATAGATGAAAGCC
Found at i:82864963 original size:20 final size:20
Alignment explanation
Indices: 82864903--82864963 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
82864893 GCTAAGTAAA
*
82864903 AATACATGTATATAT-TT-T
1 AATAAATGTATATATATTAT
* *
82864921 -AT-AATATATATGTATTA-
1 AATAAATGTATATATATTAT
82864938 AGATAAATGTATATATATTAT
1 A-ATAAATGTATATATATTAT
82864959 AATAA
1 AATAA
82864964 TTAAAGGTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 10
0.68 0.11 0.21
Matches are distributed among these distances:
16 8 0.25
17 4 0.12
19 2 0.06
20 17 0.53
21 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.44
Consensus pattern (20 bp):
AATAAATGTATATATATTAT
Found at i:82865028 original size:16 final size:16
Alignment explanation
Indices: 82864988--82865031 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
82864978 AAGTATATGT
82864988 AGTATAATAAATAATA
1 AGTATAATAAATAATA
* *
82865004 TG-ATAAATAAATATTA
1 AGTAT-AATAAATAATA
82865020 AGTATAATAAAT
1 AGTATAATAAAT
82865032 GAAATAGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 2 0.09
16 19 0.83
17 2 0.09
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (16 bp):
AGTATAATAAATAATA
Found at i:82865450 original size:20 final size:20
Alignment explanation
Indices: 82865413--82865450 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
82865403 GTGAAATTAG
*
82865413 TATGAAAATATAAGATTAAA
1 TATGAAAATATAAAATTAAA
82865433 TATGAAGAAT-TAAAATTA
1 TATGAA-AATATAAAATTA
82865451 GTCTCGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (20 bp):
TATGAAAATATAAAATTAAA
Found at i:82870775 original size:44 final size:47
Alignment explanation
Indices: 82870571--82870877 Score: 204
Period size: 47 Copynumber: 6.5 Consensus size: 47
82870561 GACGAGGGCT
* * * * *
82870571 AGTGTAAGACGTGTCTGGGACATGCATCAGCCGC-ATCATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTTAGCC
* ** *
82870617 CGTGTAAGACCACATCTGGGACATGGCATCGGCGT-AGAGGTGA-G-T-GCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCA-A--TGATGTTAGCC
82870665 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTTAGCC
* *
82870712 AGTGTAAGACGTGTCTGGGACATGCATCGG-CT-AA-G-T-TTCATGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTT-A-GCC
* * ** * * ** *
82870756 AGTGTAAGACATGTCTGGGACATGCATCAGCATGTATACACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAT-GATGTTAGCC
* * * *
82870804 AGTGTAAGACCATGTCTGAGACATAGCATCAGCCTCGATGGA-GATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAT-GATGTTAGCC
*
82870853 AGCGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
82870878 GCAGCGGCAA
Statistics
Matches: 209, Mismatches: 32, Indels: 38
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.01
43 2 0.01
44 34 0.16
45 4 0.02
46 22 0.11
47 56 0.27
48 31 0.15
49 43 0.21
50 13 0.06
51 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTTAGCC
Found at i:82870783 original size:91 final size:94
Alignment explanation
Indices: 82870568--82870786 Score: 277
Period size: 94 Copynumber: 2.4 Consensus size: 94
82870558 TTAGACGAGG
* *
82870568 GCTAGTGTAAGACGTGTCTGGGACATGCATCAGCCGCATCATGATAGCCCGTGTAAGACCACATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAGCCAGTGTAAGACCACATC
*
82870633 TGGGACATGGCATCGGCGTAGAGGTGAGT
66 TGGGACATGGCATCGGCGTAGAGGTCAGT
* * * * * ***
82870662 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGTTAGCCAGTGTAAGA-CGTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCGC-ATCATGATAGCCAGTGTAAGACCACAT
*
82870726 CTGGGACAT-GCATCGGC-TA-AGTTTCA-T
65 CTGGGACATGGCATCGGCGTAGAG-GTCAGT
82870753 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC
82870787 ATGTATACAC
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
91 35 0.32
92 4 0.04
93 8 0.07
94 44 0.40
95 18 0.17
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAGCCAGTGTAAGACCACATC
TGGGACATGGCATCGGCGTAGAGGTCAGT
Found at i:82884037 original size:18 final size:18
Alignment explanation
Indices: 82884014--82884052 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
82884004 TTTAATCTTC
82884014 AAGAACTATTAATAAAAA
1 AAGAACTATTAATAAAAA
82884032 AAGAACTATTAATAAAAA
1 AAGAACTATTAATAAAAA
82884050 AAG
1 AAG
82884053 TTTTTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.67, C:0.05, G:0.08, T:0.21
Consensus pattern (18 bp):
AAGAACTATTAATAAAAA
Found at i:82891259 original size:15 final size:15
Alignment explanation
Indices: 82891239--82891272 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
82891229 ATTAATTTTG
*
82891239 ATATTTTCTATTATT
1 ATATTTACTATTATT
82891254 ATATTTACTATTATT
1 ATATTTACTATTATT
82891269 -TATT
1 ATATT
82891273 GCCATCTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (15 bp):
ATATTTACTATTATT
Found at i:82891287 original size:3 final size:3
Alignment explanation
Indices: 82891281--82891306 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
82891271 TTGCCATCTC
82891281 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
82891307 CGTATTAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:82891769 original size:22 final size:22
Alignment explanation
Indices: 82891741--82891783 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
82891731 TTTTATATAT
82891741 ATATTATCATGT-ATATATTTTG
1 ATATTATCA-GTAATATATTTTG
*
82891763 ATATTATTAGTAATATATTTT
1 ATATTATCAGTAATATATTTT
82891784 TTATACATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (22 bp):
ATATTATCAGTAATATATTTTG
Done.