Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 247 of 284
Found at i:82891794 original size:47 final size:45
Alignment explanation
Indices: 82891728--82891855 Score: 107
Period size: 49 Copynumber: 2.7 Consensus size: 45
82891718 ATATTTTCTA
*
82891728 ATATTTTATATATATATTATCATGTATATATTTT-GATATTATTAGTAAT
1 ATATTTT-T-TATA-ATTATCATGTATATATTTTAG-TA-TAGTAGTAAT
* * * *
82891777 ATATTTTTTATACATTATTTCGTGTATATACTTTAGTATCGTAGTTAT
1 ATATTTTTTATA-ATTA--TCATGTATATATTTTAGTATAGTAGTAAT
*
82891825 ATA-TTTTTATAATATTTCATGTATATATTTT
1 ATATTTTTTATAAT-TATCATGTATATATTTT
82891856 CATGCATATA
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
45 13 0.20
46 2 0.03
47 17 0.26
48 11 0.17
49 22 0.33
50 1 0.02
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.56
Consensus pattern (45 bp):
ATATTTTTTATAATTATCATGTATATATTTTAGTATAGTAGTAAT
Found at i:82891856 original size:14 final size:14
Alignment explanation
Indices: 82891839--82891870 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
82891829 TTTTATAATA
*
82891839 TTTCATGTATATAT
1 TTTCATGCATATAT
82891853 TTTCATGCATATAT
1 TTTCATGCATATAT
82891867 TTTC
1 TTTC
82891871 TTTTACATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTCATGCATATAT
Found at i:82893655 original size:48 final size:48
Alignment explanation
Indices: 82893584--82893694 Score: 170
Period size: 48 Copynumber: 2.3 Consensus size: 48
82893574 CTCATATCGG
82893584 TGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCAA
1 TGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCAA
* * ** *
82893632 TGCCATGTGCCAGACATGGTCTTACATGGGATCACATATCGATGTCAA
1 TGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCAA
82893680 TGCCAT-TCCCAGACA
1 TGCCATGTCCCAGACA
82893695 CGATCTTATA
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 8 0.14
48 49 0.86
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCAA
Found at i:82893712 original size:25 final size:25
Alignment explanation
Indices: 82893684--82893731 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
82893674 TGTCAATGCC
82893684 ATTCCCAGACACGATCTTATATGTG
1 ATTCCCAGACACGATCTTATATGTG
*
82893709 ATTCCCAGACACGGTCTTATATG
1 ATTCCCAGACACGATCTTATATG
82893732 GGATCACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (25 bp):
ATTCCCAGACACGATCTTATATGTG
Found at i:82895230 original size:13 final size:14
Alignment explanation
Indices: 82895212--82895244 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
82895202 TTTAATTTTC
*
82895212 AAAATTTCAAAA-A
1 AAAATTTAAAAATA
82895225 AAAATTTAAAAATA
1 AAAATTTAAAAATA
82895239 AAAATT
1 AAAATT
82895245 GCATTTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAATTTAAAAATA
Found at i:82895274 original size:30 final size:31
Alignment explanation
Indices: 82895240--82895341 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
82895230 TTAAAAATAA
*
82895240 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
82895270 AAATTTCATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
82895300 AAATTTCACTTAGACCCCTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCCTAAACTTTTC-TCT
82895330 AAATTTCATTTT
1 AAATTTCATTTT
82895342 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.06
30 57 0.92
31 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTCT
Found at i:82895737 original size:3 final size:3
Alignment explanation
Indices: 82895729--82895774 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
82895719 GCTAGACTTT
*
82895729 GAA GAA GAA GAA GGAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA GAA
1 GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA
82895775 AGAAANGTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:82895747 original size:10 final size:10
Alignment explanation
Indices: 82895732--82895760 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
82895722 AGACTTTGAA
82895732 GAAGAAGAAG
1 GAAGAAGAAG
82895742 GAAGAAGAAG
1 GAAGAAGAAG
82895752 GAAGAAGAA
1 GAAGAAGAA
82895761 AAGAGGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:82895747 original size:13 final size:13
Alignment explanation
Indices: 82895729--82895774 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
82895719 GCTAGACTTT
82895729 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
82895742 GAAGAAGAAGGAA-
1 GAAGAAGAA-GAAG
82895755 GAAGAA-AAG-AG
1 GAAGAAGAAGAAG
82895766 GAAGAAGAA
1 GAAGAAGAA
82895775 AGAAANGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 7 0.23
12 4 0.13
13 15 0.50
14 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:82895786 original size:24 final size:24
Alignment explanation
Indices: 82895729--82895778 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
82895719 GCTAGACTTT
* *
82895729 GAAGAAGAAGA-AGGAAGAAGAAG
1 GAAGAAGAAAAGAGGAAGAAGAAA
82895752 GAAGAAGAAAAGAGGAAGAAGAAA
1 GAAGAAGAAAAGAGGAAGAAGAAA
82895776 GAA
1 GAA
82895779 ANGTAAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (24 bp):
GAAGAAGAAAAGAGGAAGAAGAAA
Found at i:82907781 original size:16 final size:17
Alignment explanation
Indices: 82907760--82907793 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
82907750 TGCTGAGGTA
*
82907760 TTTTCAATTTATG-TTT
1 TTTTCAATCTATGCTTT
82907776 TTTTCAATCTATGCTTT
1 TTTTCAATCTATGCTTT
82907793 T
1 T
82907794 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTCAATCTATGCTTT
Found at i:82907957 original size:85 final size:88
Alignment explanation
Indices: 82907699--82907957 Score: 300
Period size: 91 Copynumber: 2.9 Consensus size: 88
82907689 TAATTTTTGT
*
82907699 TTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCT-ACACGCTGAGGTATTT
*
82907763 TCAATTTATGTTTTTTTCAA-TCTATGC
64 TCAATTTCTG-TTTTTT-AATTCTA-GC
* * *
82907790 TTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTCGAGCCTCAAGG---CACGCTGAGGTATTT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCTACACGCTGAGGTATTT
**
82907852 TCAATTTCTGCTTTACTAATTCTA-C
64 TCAATTTCTG-TTTTTTAATTCTAGC
* *
82907877 TTTTC-AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCTACACGCTGAGGTCTTTTC
1 TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCTACACGCTGAGGTATTTTC
*
82907941 AAATTCTG-TTTTTAATT
66 AATTTCTGTTTTTTAATT
82907958 TCTGTTTTTT
Statistics
Matches: 146, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
84 3 0.02
85 39 0.27
87 29 0.20
88 2 0.01
89 31 0.21
91 40 0.27
93 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (88 bp):
TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCTACACGCTGAGGTATTTTC
AATTTCTGTTTTTTAATTCTAGC
Found at i:82910093 original size:20 final size:22
Alignment explanation
Indices: 82910056--82910099 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
82910046 AATTTTGTGT
*
82910056 AAAAAAATCCAGTGTTTTCAAAA
1 AAAAAAATCCAGT-TTTCCAAAA
82910079 AAAAAAATCCA-TTTTCCAAAA
1 AAAAAAATCCAGTTTTCCAAAA
82910100 TTTTTAGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 8 0.40
22 1 0.05
23 11 0.55
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.25
Consensus pattern (22 bp):
AAAAAAATCCAGTTTTCCAAAA
Found at i:82910169 original size:18 final size:17
Alignment explanation
Indices: 82910095--82910257 Score: 159
Period size: 17 Copynumber: 9.4 Consensus size: 17
82910085 ATCCATTTTC
* *
82910095 CAAAATTTTTAGTGTCTT
1 CAAAAATTTTCGTGT-TT
*
82910113 CTAAAAATTTTTGTGTTT
1 C-AAAAATTTTCGTGTTT
82910131 CAAAAATTTTCGT-TTT
1 CAAAAATTTTCGTGTTT
*
82910147 CAAAAATTTCCGTGTTT
1 CAAAAATTTTCGTGTTT
82910164 CAAAAATTTTCGTGTTTT
1 CAAAAATTTTCGTG-TTT
* *
82910182 CAAAATTTTTCGTATTT
1 CAAAAATTTTCGTGTTT
** *
82910199 CAAAAATCCTCTTGTTTT
1 CAAAAATTTTCGTG-TTT
82910217 CAAAAA-TTTCGGTGTTT
1 CAAAAATTTTC-GTGTTT
**
82910234 TGAAAATTTTCGTGTTTT
1 CAAAAATTTTCGTG-TTT
82910252 CAAAAA
1 CAAAAA
82910258 AAAAATCTCG
Statistics
Matches: 119, Mismatches: 19, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
16 15 0.13
17 51 0.43
18 41 0.34
19 12 0.10
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (17 bp):
CAAAAATTTTCGTGTTT
Found at i:82910257 original size:35 final size:34
Alignment explanation
Indices: 82910095--82910257 Score: 168
Period size: 35 Copynumber: 4.7 Consensus size: 34
82910085 ATCCATTTTC
* * * *
82910095 CAAAATTTTTAGTGTCTTCTAAAAATTTTTGTGTTT
1 CAAAAATTTTCGTGTTTTC-AAAAA-TTTCGTGTTT
82910131 CAAAAATTTTC--GTTTTCAAAAATTTCCGTGTTT
1 CAAAAATTTTCGTGTTTTCAAAAATTT-CGTGTTT
* *
82910164 CAAAAATTTTCGTGTTTTCAAAATTTTTCGTATTT
1 CAAAAATTTTCGTGTTTTCAAAA-ATTTCGTGTTT
** *
82910199 CAAAAATCCTCTTGTTTTCAAAAATTTCGGTGTTT
1 CAAAAATTTTCGTGTTTTCAAAAATTTC-GTGTTT
**
82910234 TGAAAATTTTCGTGTTTTCAAAAA
1 CAAAAATTTTCGTGTTTTCAAAAA
82910258 AAAAATCTCG
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
32 3 0.03
33 22 0.21
34 9 0.08
35 60 0.57
36 12 0.11
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (34 bp):
CAAAAATTTTCGTGTTTTCAAAAATTTCGTGTTT
Found at i:82910272 original size:39 final size:38
Alignment explanation
Indices: 82910218--82910345 Score: 106
Period size: 39 Copynumber: 3.4 Consensus size: 38
82910208 TCTTGTTTTC
*
82910218 AAAAATTTCGGTGTTTTGAAAATTTTCGTGTTTTCAAAAA
1 AAAAATCTC-GTGTTTT-AAAATTTTCGTGTTTTCAAAAA
*
82910258 AAAAATCTCGTGTTTCATAAATTTT-G-GTTTT--AAAA
1 AAAAATCTCGTGTTTTA-AAATTTTCGTGTTTTCAAAAA
* * * *
82910293 AAATAT-T-ATGTCTTAAAATTCTCGTGTTTTCAAAACA
1 AAAAATCTCGTGTTTTAAAATTTTCGTGTTTTCAAAA-A
*
82910330 AGAAATTCTCGTGTTT
1 A-AAAATCTCGTGTTT
82910346 CAATCGGATC
Statistics
Matches: 68, Mismatches: 11, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
32 6 0.09
33 6 0.09
34 6 0.09
35 9 0.13
36 3 0.04
37 7 0.10
38 5 0.07
39 14 0.21
40 12 0.18
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.42
Consensus pattern (38 bp):
AAAAATCTCGTGTTTTAAAATTTTCGTGTTTTCAAAAA
Found at i:82911338 original size:42 final size:40
Alignment explanation
Indices: 82911250--82911349 Score: 94
Period size: 40 Copynumber: 2.4 Consensus size: 40
82911240 CCAAAACATG
* * * * *
82911250 AGCTTAAATTGTTCATCCAAAATATAATCTCTTAAGCACA
1 AGCTTAAATTGTTTATCCAAAAAATAAGCTCCTAAGAACA
*
82911290 AACTTAAATTGTTTATCCAAAAAATAAGGCTCCTAA-AATGCA
1 AGCTTAAATTGTTTATCCAAAAAATAA-GCTCCTAAGAA--CA
*
82911332 AGCTTAAACTGTTGTATC
1 AGCTTAAATTGTT-TATC
82911350 ACTCCAAAGC
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
40 25 0.52
41 6 0.12
42 13 0.27
43 4 0.08
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (40 bp):
AGCTTAAATTGTTTATCCAAAAAATAAGCTCCTAAGAACA
Found at i:82913947 original size:7 final size:7
Alignment explanation
Indices: 82913935--82913974 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
82913925 AAGGGTAGAG
82913935 AATAGCC
1 AATAGCC
82913942 AATAGCC
1 AATAGCC
82913949 AATAGCC
1 AATAGCC
*
82913956 CATAGCC
1 AATAGCC
*
82913963 AA-GGCC
1 AATAGCC
82913969 AATAGC
1 AATAGC
82913975 AAAGGGGAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.40, C:0.30, G:0.17, T:0.12
Consensus pattern (7 bp):
AATAGCC
Found at i:82919351 original size:125 final size:125
Alignment explanation
Indices: 82919124--82919427 Score: 574
Period size: 125 Copynumber: 2.4 Consensus size: 125
82919114 GATGGATGAA
*
82919124 TTTGATACTTTGTGGTGAATTTAGTGATGGGTTTGTTGAAAATTTTGAAGTTAATTAATTTAAAA
1 TTTGGTACTTTGTGGTGAATTTAGTGATGGGTTTGTTGAAAATTTTGAAGTTAATTAATTTAAAA
82919189 AAAAAATAAAGAATCTTCCCCCATTCTTCAGTGTGAGAGATGCATGAAAGGCATATCTGT
66 AAAAAATAAAGAATCTTCCCCCATTCTTCAGTGTGAGAGATGCATGAAAGGCATATCTGT
82919249 TTTGGTACTTTGTGGTGAATTTAGTGATGGGTTTGTTGAAAATTTTGAAGTTAATTAATTTAAAA
1 TTTGGTACTTTGTGGTGAATTTAGTGATGGGTTTGTTGAAAATTTTGAAGTTAATTAATTTAAAA
82919314 AAAAAATAAAGAATCTTCCCCCATTCTTCAGTGTGAGAGATGCATGAAAGGCATATCTGT
66 AAAAAATAAAGAATCTTCCCCCATTCTTCAGTGTGAGAGATGCATGAAAGGCATATCTGT
* *
82919374 TTTGGTACTTTGTGGTGAATTTAGTGATGGGTTTGTTGAATA-TTTGAAGCTAAT
1 TTTGGTACTTTGTGGTGAATTTAGTGATGGGTTTGTTGAAAATTTTGAAGTTAAT
82919428 GAAGTAAAGA
Statistics
Matches: 176, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
124 11 0.06
125 165 0.94
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (125 bp):
TTTGGTACTTTGTGGTGAATTTAGTGATGGGTTTGTTGAAAATTTTGAAGTTAATTAATTTAAAA
AAAAAATAAAGAATCTTCCCCCATTCTTCAGTGTGAGAGATGCATGAAAGGCATATCTGT
Found at i:82922792 original size:12 final size:12
Alignment explanation
Indices: 82922775--82922811 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
82922765 TAACACGACC
82922775 TAACTTTGGTGT
1 TAACTTTGGTGT
**
82922787 TAACTTTGGTCC
1 TAACTTTGGTGT
82922799 TAACTTTGGTGT
1 TAACTTTGGTGT
82922811 T
1 T
82922812 TCAGTCCTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.16, C:0.14, G:0.22, T:0.49
Consensus pattern (12 bp):
TAACTTTGGTGT
Found at i:82929772 original size:20 final size:20
Alignment explanation
Indices: 82929732--82929772 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
82929722 GGAAATTAAA
* *
82929732 TTTATTTTAGTATTTATATT
1 TTTATTTTAGTACTTAAATT
*
82929752 TTTATTTTCGTACTTAAATT
1 TTTATTTTAGTACTTAAATT
82929772 T
1 T
82929773 GGTAATTACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (20 bp):
TTTATTTTAGTACTTAAATT
Found at i:82929989 original size:26 final size:29
Alignment explanation
Indices: 82929951--82930004 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 29
82929941 TTTAATTACC
*
82929951 AATATTAAGTATCAAAGT-AGA-TAAAAA
1 AATATTAAATATCAAAGTGAGACTAAAAA
82929978 AATA-TAAATATCAAAGTGAGACTAAAA
1 AATATTAAATATCAAAGTGAGACTAAAA
82930005 GTTATATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 12 0.50
27 7 0.29
28 5 0.21
ACGTcount: A:0.59, C:0.06, G:0.11, T:0.24
Consensus pattern (29 bp):
AATATTAAATATCAAAGTGAGACTAAAAA
Found at i:82930609 original size:24 final size:25
Alignment explanation
Indices: 82930552--82930610 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
82930542 CAAATTTTAT
* *
82930552 TTTTAT-TTAATATATAATTAATATA
1 TTTTATATT-ATATAAAAATAATATA
*
82930577 TTTTTTATTATATAAAAATAA-ATA
1 TTTTATATTATATAAAAATAATATA
82930601 TTTTATATTA
1 TTTTATATTA
82930611 AAAATAGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 12 0.41
25 15 0.52
26 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
TTTTATATTATATAAAAATAATATA
Found at i:82935217 original size:19 final size:19
Alignment explanation
Indices: 82935190--82935239 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
82935180 TGTCAATCCT
*
82935190 TATACATACATAATTTATA
1 TATATATACATAATTTATA
*
82935209 TATATATACGTAATTTATA
1 TATATATACATAATTTATA
82935228 TATATATACATA
1 TATATATACATA
82935240 TACATATATC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (19 bp):
TATATATACATAATTTATA
Found at i:82935845 original size:86 final size:86
Alignment explanation
Indices: 82935692--82935859 Score: 275
Period size: 86 Copynumber: 2.0 Consensus size: 86
82935682 ATGAGAATGG
* * *
82935692 TTCATTTGGATAACACGTTTTAATAGGGAAGAGAAAGTAAAAAAAGAATTAATAGTCTCTCCCTT
1 TTCATATGGATAACACGTTTTAACAGGGAAGAGAAAGTAAAAAAAGAATTAATAATCTCTCCCTT
82935757 TCTTTGTGTTACTATGTAGGA
66 TCTTTGTGTTACTATGTAGGA
* *
82935778 TTCATATGGATAACATGTTTTAACAGGGAAGAGAAAGT-AAAAAAGAATTGATAATCTCTCCCTT
1 TTCATATGGATAACACGTTTTAACAGGGAAGAGAAAGTAAAAAAAGAATTAATAATCTCTCCC-T
82935842 TTCTTTGTGTTACTATGT
65 TTCTTTGTGTTACTATGT
82935860 TTTTATTTCG
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
85 22 0.29
86 54 0.71
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.36
Consensus pattern (86 bp):
TTCATATGGATAACACGTTTTAACAGGGAAGAGAAAGTAAAAAAAGAATTAATAATCTCTCCCTT
TCTTTGTGTTACTATGTAGGA
Found at i:82940952 original size:44 final size:44
Alignment explanation
Indices: 82940866--82940952 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
82940856 TTACATGTAC
* * **
82940866 CGCATCCATTATGAACTCAGACCAATTCAACAAGTTTGGATGCT
1 CGCATCCATAATGAACTCAGACCAACTCAACAAGTTCAGATGCT
*
82940910 CGCATCCATAATGAACTCGGACCAACTCAACAAGTTCAGATGC
1 CGCATCCATAATGAACTCAGACCAACTCAACAAGTTCAGATGC
82940953 CTCATATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (44 bp):
CGCATCCATAATGAACTCAGACCAACTCAACAAGTTCAGATGCT
Found at i:82941203 original size:16 final size:16
Alignment explanation
Indices: 82941179--82941210 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82941169 TTAAGAATTT
82941179 ATATAACATATATCAC
1 ATATAACATATATCAC
*
82941195 ATATTACATATATCAC
1 ATATAACATATATCAC
82941211 TTGTCATGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATAACATATATCAC
Found at i:82943958 original size:28 final size:28
Alignment explanation
Indices: 82943926--82944004 Score: 81
Period size: 28 Copynumber: 2.7 Consensus size: 28
82943916 TAATCACTTT
*
82943926 AATATTAAATTTAATCTAATA-CAAGATA
1 AATATTAAATTAAAT-TAATATCAAGATA
*
82943954 AATATTAAATTAAATTAATATTAAGAT-
1 AATATTAAATTAAATTAATATCAAGATA
82943981 AATCACTTTAATATTAAATTAATA
1 AAT-A--TTAA-ATTAAATTAATA
82944005 AAATACTATT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 8 0.18
28 20 0.45
30 4 0.09
31 12 0.27
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (28 bp):
AATATTAAATTAAATTAATATCAAGATA
Found at i:82944033 original size:20 final size:19
Alignment explanation
Indices: 82943992--82944046 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
82943982 ATCACTTTAA
* *
82943992 TATTAAATTAATA-AAATAC
1 TATTAAAATAATATTAAT-C
*
82944011 TATTAAGATAAATATTAATC
1 TATTAAAAT-AATATTAATC
82944031 TATTAAAATAATATTA
1 TATTAAAATAATATTA
82944047 TTTTTGGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 14 0.47
20 13 0.43
21 3 0.10
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (19 bp):
TATTAAAATAATATTAATC
Found at i:82946161 original size:39 final size:39
Alignment explanation
Indices: 82946118--82947044 Score: 1458
Period size: 39 Copynumber: 23.8 Consensus size: 39
82946108 GCTCTGATCA
82946118 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
82946157 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
82946196 ACTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
82946235 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
82946274 ACTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
82946313 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
82946352 ACTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
82946391 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
82946430 ACTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
82946469 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
82946508 ACTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
82946547 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
82946586 ACTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
82946625 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
82946664 ACTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
82946703 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
82946742 ACTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
82946781 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
82946820 ACTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
82946859 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
82946898 ACTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
82946937 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
82946976 ACTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
82947015 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAG
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAG
82947045 AGCATAAGCC
Statistics
Matches: 800, Mismatches: 88, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 800 1.00
ACGTcount: A:0.10, C:0.26, G:0.26, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:82946232 original size:78 final size:78
Alignment explanation
Indices: 82946119--82947041 Score: 1828
Period size: 78 Copynumber: 11.8 Consensus size: 78
82946109 CTCTGATCAG
* *
82946119 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82946184 CAGCACTTGTGTA
66 CAGCACTTGTGTA
82946197 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82946262 CAGCACTTGTGTA
66 CAGCACTTGTGTA
82946275 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82946340 CAGCACTTGTGTA
66 CAGCACTTGTGTA
82946353 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82946418 CAGCACTTGTGTA
66 CAGCACTTGTGTA
82946431 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82946496 CAGCACTTGTGTA
66 CAGCACTTGTGTA
82946509 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82946574 CAGCACTTGTGTA
66 CAGCACTTGTGTA
82946587 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82946652 CAGCACTTGTGTA
66 CAGCACTTGTGTA
82946665 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82946730 CAGCACTTGTGTA
66 CAGCACTTGTGTA
82946743 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82946808 CAGCACTTGTGTA
66 CAGCACTTGTGTA
82946821 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82946886 CAGCACTTGTGTA
66 CAGCACTTGTGTA
82946899 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82946964 CAGCACTTGTGTA
66 CAGCACTTGTGTA
82946977 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
1 CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
82947042 TAGAGCATAA
Statistics
Matches: 843, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 843 1.00
ACGTcount: A:0.10, C:0.26, G:0.26, T:0.38
Consensus pattern (78 bp):
CTTCAGTTAGCCTTCGGGCTTTCGTTTGGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCCGTT
CAGCACTTGTGTA
Found at i:82950500 original size:29 final size:30
Alignment explanation
Indices: 82950435--82950502 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
82950425 GTGCATTATT
* *
82950435 TGGTACATATACTTTCATAAAATGTCAATTG
1 TGGTACTTATACTTT-AGAAAATGTCAATTG
*
82950466 TTGTACTTATACTTT-GAAAATGTTCAA-TG
1 TGGTACTTATACTTTAGAAAATG-TCAATTG
82950495 TGGTACTT
1 TGGTACTT
82950503 GAACTATCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 15 0.47
30 4 0.12
31 13 0.41
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.43
Consensus pattern (30 bp):
TGGTACTTATACTTTAGAAAATGTCAATTG
Found at i:82951140 original size:87 final size:87
Alignment explanation
Indices: 82951035--82951194 Score: 209
Period size: 87 Copynumber: 1.8 Consensus size: 87
82951025 CATTAAATAC
* *
82951035 TTTCAAAGTATAAGTACCACA-TGGACATTTTATGAAAATA-AATTTACCAAATAATACACAAAT
1 TTTCAAAGTATAAGTACCACATTGAACATTTTATGAAAATACAA-GT-CCAAATAATACACAAAT
82951098 TGATAGTTCATGTACCACTGGAAA
64 TGATAGTTCATGTACCACTGGAAA
* ** * *
82951122 TTTCAAAGTATATA-TACCACATTGAATATTTTATGAAGGTACAAGTCCAAATACTACATAAATT
1 TTTCAAAGTATA-AGTACCACATTGAACATTTTATGAAAATACAAGTCCAAATAATACACAAATT
82951186 GATAGTTCA
65 GATAGTTCA
82951195 AGTATCACAA
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
87 44 0.70
88 17 0.27
89 2 0.03
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.32
Consensus pattern (87 bp):
TTTCAAAGTATAAGTACCACATTGAACATTTTATGAAAATACAAGTCCAAATAATACACAAATTG
ATAGTTCATGTACCACTGGAAA
Found at i:82957160 original size:9 final size:9
Alignment explanation
Indices: 82957146--82957179 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
82957136 TAAAATAAAC
82957146 CGAATTAAT
1 CGAATTAAT
*
82957155 CGAATTAAC
1 CGAATTAAT
*
82957164 CGAATTACT
1 CGAATTAAT
82957173 CGAATTA
1 CGAATTA
82957180 CCCAAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (9 bp):
CGAATTAAT
Found at i:82957166 original size:18 final size:18
Alignment explanation
Indices: 82957143--82957206 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
82957133 GTATAAAATA
82957143 AACCGAATTAATCGAATT
1 AACCGAATTAATCGAATT
*
82957161 AACCGAATTACTCGAATT
1 AACCGAATTAATCGAATT
* * * *
82957179 ACCCAAATTAACCGAATA
1 AACCGAATTAATCGAATT
*
82957197 AACTGAATTA
1 AACCGAATTA
82957207 TTTGTATAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.45, C:0.20, G:0.09, T:0.25
Consensus pattern (18 bp):
AACCGAATTAATCGAATT
Found at i:82958804 original size:22 final size:22
Alignment explanation
Indices: 82958779--82958823 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
82958769 ATTCATTAAG
82958779 TTATGTTATTTTTAAATTTTGA
1 TTATGTTATTTTTAAATTTTGA
82958801 TTATGTTATTTTTAAATTTTGA
1 TTATGTTATTTTTAAATTTTGA
82958823 T
1 T
82958824 GTGTCAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (22 bp):
TTATGTTATTTTTAAATTTTGA
Found at i:82960319 original size:78 final size:78
Alignment explanation
Indices: 82960186--82961117 Score: 1738
Period size: 78 Copynumber: 11.9 Consensus size: 78
82960176 GAGTCACATC
* * *
82960186 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAGGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
*
82960251 AATGAATCATATA
66 AGTGAATCATATA
82960264 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
82960329 AGTGAATCATATA
66 AGTGAATCATATA
82960342 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
82960407 AGTGAATCATATA
66 AGTGAATCATATA
82960420 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
82960485 AGTGAATCATATA
66 AGTGAATCATATA
82960498 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
82960563 AGTGAATCATATA
66 AGTGAATCATATA
82960576 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
82960641 AGTGAATCATATA
66 AGTGAATCATATA
82960654 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
82960719 AGTGAATCATATA
66 AGTGAATCATATA
82960732 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
82960797 AGTGAATCATATA
66 AGTGAATCATATA
82960810 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
82960875 AGTGAATCATATA
66 AGTGAATCATATA
* * * * *
82960888 TCATGTAACTGTAGCGAATCAAGATTACCTTTTCAGGTCAAATCCTATCCACCTTAGGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
*
82960953 AATGAATCATATA
66 AGTGAATCATATA
82960966 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
82961031 AGTGAATCATATA
66 AGTGAATCATATA
* * * *
82961044 TCATGTAACTGTAGCGAATCAAGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
82961109 AGTGAATCA
66 AGTGAATCA
82961118 GGAATAAATC
Statistics
Matches: 834, Mismatches: 20, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 834 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (78 bp):
TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCGCCTTAAGTTACCAT
AGTGAATCATATA
Found at i:82961130 original size:40 final size:40
Alignment explanation
Indices: 82961082--82961219 Score: 186
Period size: 40 Copynumber: 3.5 Consensus size: 40
82961072 CTTTTCAGGT
*
82961082 CAAATCCTATCCACCTTAAGTTACCATAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
* * * *
82961122 TAAATCCTATTCACTTTAAATTACCATAGTGAATTAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
* * **
82961162 CAAATCCTATCCACTTTGAGGTATTATAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
*
82961202 CGAATCCTATCCACTTTA
1 CAAATCCTATCCACTTTA
82961220 TATTCTCGAG
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.30
Consensus pattern (40 bp):
CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
Found at i:82967513 original size:24 final size:24
Alignment explanation
Indices: 82967481--82967541 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
82967471 AACCGTATTT
* * *
82967481 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTA-AATC
82967505 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCCATAGTAAATC
82967529 GCACACATAGTGC
1 GCACACATAGTGC
82967542 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 30 0.91
25 3 0.09
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAATC
Found at i:82969832 original size:78 final size:78
Alignment explanation
Indices: 82969699--82969928 Score: 397
Period size: 78 Copynumber: 2.9 Consensus size: 78
82969689 GAGTCACATC
* * * *
82969699 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAAGTCAGATCCTATCCACCTTAGGTTACCAT
1 TCATGTAACTGTAGCGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
*
82969764 AATGAATCATATA
66 AGTGAATCATATA
*
82969777 TCATGTAACTGTAGCGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCGCCTTAAGTTACCAT
1 TCATGTAACTGTAGCGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
82969842 AGTGAATCATATA
66 AGTGAATCATATA
*
82969855 TCATGTAACTGTAGCGAATCAAGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
1 TCATGTAACTGTAGCGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
82969920 AGTGAATCA
66 AGTGAATCA
82969929 GGAATAAATC
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 144 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (78 bp):
TCATGTAACTGTAGCGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
AGTGAATCATATA
Found at i:82969941 original size:40 final size:40
Alignment explanation
Indices: 82969893--82970030 Score: 186
Period size: 40 Copynumber: 3.5 Consensus size: 40
82969883 CTTTTCAGGT
*
82969893 CAAATCCTATCCACCTTAAGTTACCATAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
* * * *
82969933 TAAATCCTATTCACTTTAAATTACCATAGTGAATTAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
* * **
82969973 CAAATCCTATCCACTTTGAGGTATTATAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
*
82970013 CGAATCCTATCCACTTTA
1 CAAATCCTATCCACTTTA
82970031 TATTCTCGAG
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.30
Consensus pattern (40 bp):
CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
Found at i:82977191 original size:27 final size:27
Alignment explanation
Indices: 82977159--82977335 Score: 194
Period size: 27 Copynumber: 6.5 Consensus size: 27
82977149 TTAAATTGTA
82977159 TAGCACTAAGTGTGCGATTTGACTATG
1 TAGCACTAAGTGTGCGATTTGACTATG
* ** *
82977186 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATTTGACTATG
* *
82977213 -ATGCACTAAGTGTGCGAATTGACCATG
1 TA-GCACTAAGTGTGCGATTTGACTATG
** *
82977240 CGGCACTAAGTGTGCGAGTTTGAGTATG
1 TAGCACTAAGTGTGCGA-TTTGACTATG
* *
82977268 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATTTGACTATG
* * *
82977295 TAGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGATTTGACTATG
*
82977322 TAGCACTGAGTGTG
1 TAGCACTAAGTGTG
82977336 TGGACTCAAT
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATTTGACTATG
Found at i:82977274 original size:82 final size:81
Alignment explanation
Indices: 82977161--82977316 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
82977151 AAATTGTATA
* *
82977161 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
82977225 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
82977242 GCACTAAGTGTGCGAGTTTGAGTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
82977307 TGCGAGTTGA
65 TGCGAATTGA
82977317 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82977328 original size:82 final size:81
Alignment explanation
Indices: 82977157--82977335 Score: 216
Period size: 82 Copynumber: 2.2 Consensus size: 81
82977147 GATTAAATTG
* *
82977157 TATAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82977222 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * ** *
82977238 TGCGGCACTAAGTGTGCGAGTTTGAGTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82977302 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
82977320 TATAGCACTGAGTGTG
1 TATAGCACTAAGTGTG
82977336 TGGACTCAAT
Statistics
Matches: 80, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 63 0.79
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82984215 original size:27 final size:27
Alignment explanation
Indices: 82984184--82984361 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82984174 TAAATTGTAC
82984184 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
82984211 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82984237 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
82984265 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
82984293 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82984320 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
82984347 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82984362 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:82984298 original size:82 final size:81
Alignment explanation
Indices: 82984185--82984340 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82984175 AAATTGTACA
* *
82984185 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
82984249 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
82984266 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
82984331 TGCGAGTTGA
65 TGCGAATTGA
82984341 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82984352 original size:82 final size:81
Alignment explanation
Indices: 82984181--82984361 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
82984171 GATTAAATTG
* *
82984181 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82984246 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
82984262 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82984326 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
82984344 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82984362 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82991134 original size:31 final size:31
Alignment explanation
Indices: 82991091--82991205 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
82991081 TTAGTCTTGA
82991091 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
82991121 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
**
82991152 CATATCACTGGGCCGAAGCCTTTTTGTAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
82991183 CATTTCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
82991206 ACTGTAAACG
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:82991280 original size:42 final size:42
Alignment explanation
Indices: 82991229--82991320 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
82991219 TGGCCCATAG
* ** * *
82991229 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGTAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
* *
82991271 GCCTATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82991313 GCCCATTT
1 GCCCATTT
82991321 GGGGAGACTA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:82991494 original size:25 final size:26
Alignment explanation
Indices: 82991466--82991613 Score: 221
Period size: 25 Copynumber: 5.8 Consensus size: 26
82991456 CTCTTTTAAT
82991466 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
82991491 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
82991516 AACTGGGGCA-AAGCCCTTTCCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
82991541 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
82991567 AACTGGGGCATAAGCCCTATTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
82991593 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
82991614 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 57 0.51
26 55 0.49
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:82991604 original size:52 final size:50
Alignment explanation
Indices: 82991466--82991613 Score: 235
Period size: 52 Copynumber: 2.9 Consensus size: 50
82991456 CTCTTTTAAT
**
82991466 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCC-TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
82991516 AACTGGGGCAAAGCCCTTTCCAATAAACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTT-CAATAAACTGGGGCATAAGCCCTTTTCGGTA
82991567 AACTGGGGCATAAGCCCTATTCAATAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCT-TTCAATAAACTGGGGCATAAGCCCTTTT
82991614 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
49 3 0.03
50 29 0.32
51 25 0.27
52 33 0.36
53 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (50 bp):
AACTGGGGCAAAGCCCTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
Found at i:82991688 original size:20 final size:20
Alignment explanation
Indices: 82991663--82991729 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
82991653 TTATGAATAC
82991663 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
82991683 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
82991703 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
82991723 ATCATGT
1 ATCATGT
82991730 ATATCATATC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:82991792 original size:25 final size:25
Alignment explanation
Indices: 82991764--82991838 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 25
82991754 ATAATTAAAC
* * * *
82991764 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTCA
* *
82991789 CCTAGAGGCAAAACAGTCATTTTCA
1 CCTAGGGGCAAAATAGTCATTTTCA
82991814 CCTAGGGGCAAAATAGTCATTTTCA
1 CCTAGGGGCAAAATAGTCATTTTCA
82991839 TACTATAAGG
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTCA
Found at i:82992519 original size:27 final size:27
Alignment explanation
Indices: 82992460--82992521 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
82992450 CGTATTCATA
*
82992460 ATTTTACCATACAAGGGTATTACAGTC
1 ATTTTACCATACAAGGGCATTACAGTC
* * * *
82992487 ACTTTACCCTACAGGGGCATTACGGTC
1 ATTTTACCATACAAGGGCATTACAGTC
*
82992514 TTTTTACC
1 ATTTTACC
82992522 TATTAGGGGT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (27 bp):
ATTTTACCATACAAGGGCATTACAGTC
Found at i:82992669 original size:27 final size:26
Alignment explanation
Indices: 82992554--82992705 Score: 115
Period size: 27 Copynumber: 5.7 Consensus size: 26
82992544 TCATCCTACA
* * * *
82992554 AGGGTGTTTTGGTAAATCTACAAATCA
1 AGGGTATTTTGGTAATTTTACAAA-CC
* ** **
82992581 AGGGTATTTTTGTAATTTTGTAAATT
1 AGGGTATTTTGGTAATTTTACAAACC
**
82992607 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTACAAA-CC
* *
82992635 AGGATATTTTGGTAATTTCACAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
* *
82992661 AGTGGTATTTTGATAATTTTACAAACT
1 AG-GGTATTTTGGTAATTTTACAAACC
*
82992688 AGGGGTGTTTTGGTAATT
1 A-GGGTATTTTGGTAATT
82992706 CTACCCTATA
Statistics
Matches: 99, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
26 3 0.03
27 93 0.94
28 3 0.03
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.42
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:82992866 original size:55 final size:55
Alignment explanation
Indices: 82992805--82992933 Score: 138
Period size: 55 Copynumber: 2.3 Consensus size: 55
82992795 GAGGGTAAAA
* * * *
82992805 CAGTAATTCTATAAATCGAT-GGTACTTTGGTAATTTTTACAAGTCGAGG-GTATTT
1 CAGTAATTTTATAAATCGATGGGTACTTTAGTAA-TTTTACAA-ACCAGGAGTATTT
* *
82992860 CAGTAATTTTACAAATC-ATGGGGTATTTTAGTAATTTTACAAACCAGGAGTATTT
1 CAGTAATTTTATAAATCGAT-GGGTACTTTAGTAATTTTACAAACCAGGAGTATTT
* *
82992915 TAGTAATTTTGTAAATCGA
1 CAGTAATTTTATAAATCGA
82992934 GGATAAAACG
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
54 6 0.10
55 43 0.70
56 12 0.20
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.40
Consensus pattern (55 bp):
CAGTAATTTTATAAATCGATGGGTACTTTAGTAATTTTACAAACCAGGAGTATTT
Found at i:82993030 original size:27 final size:27
Alignment explanation
Indices: 82992737--82993019 Score: 144
Period size: 27 Copynumber: 10.4 Consensus size: 27
82992727 GTAAATTTAC
* * *
82992737 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
82992764 AATC-AGGGGTAAAATAGTAATTCTGTA
1 AATCGA-GGGTAAAATGGTAATTCTATA
**
82992791 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *** *
82992818 AATCGATGGTACTTTGGTAATT-TTTA
1 AATCGAGGGTAAAATGGTAATTCTATA
** * * *
82992844 CAAGTCGAGGGT-ATTTCAGTAATTTTACA
1 -AA-TCGAGGGTAAAAT-GGTAATTCTATA
*** * * *
82992873 AATC-ATGGGGTATTTTAGTAATTTTACA
1 AATCGA--GGGTAAAATGGTAATTCTATA
* *** * * *
82992901 AA-CCAGGAGTATTTTAGTAATTTTGTA
1 AATCGAGG-GTAAAATGGTAATTCTATA
* *
82992928 AATCGAGGATAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
82992955 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
82992982 AATCGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
82993009 AATCGGGGGTA
1 AATCGAGGGTA
82993020 CTTTGGTAAT
Statistics
Matches: 209, Mismatches: 35, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
26 7 0.03
27 158 0.76
28 39 0.19
29 5 0.02
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:82996684 original size:22 final size:22
Alignment explanation
Indices: 82996659--82996702 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
82996649 CACAGACATG
** *
82996659 CCCTAGGGTCACATGGGCGTGT
1 CCCTAGGACCACACGGGCGTGT
*
82996681 CCCTTGGACCACACGGGCGTGT
1 CCCTAGGACCACACGGGCGTGT
82996703 GAGCCCTGCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.32, G:0.34, T:0.20
Consensus pattern (22 bp):
CCCTAGGACCACACGGGCGTGT
Found at i:83000846 original size:12 final size:12
Alignment explanation
Indices: 83000829--83000855 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
83000819 ATTCCGAAGT
83000829 ATATATATATAC
1 ATATATATATAC
83000841 ATATATATATAC
1 ATATATATATAC
83000853 ATA
1 ATA
83000856 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:83001374 original size:27 final size:27
Alignment explanation
Indices: 83001343--83001520 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
83001333 TAAATTGTAC
83001343 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
83001370 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83001396 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
83001424 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
83001452 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83001479 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
83001506 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
83001521 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:83001457 original size:82 final size:81
Alignment explanation
Indices: 83001344--83001499 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83001334 AAATTGTACA
* *
83001344 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
83001408 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
83001425 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
83001490 TGCGAGTTGA
65 TGCGAATTGA
83001500 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:83001511 original size:82 final size:81
Alignment explanation
Indices: 83001340--83001520 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
83001330 GATTAAATTG
* *
83001340 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
83001405 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
83001421 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
83001485 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
83001503 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
83001521 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:83010771 original size:39 final size:40
Alignment explanation
Indices: 83010676--83010937 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
83010666 TTGAATGATG
*
83010676 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
83010714 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
83010755 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
83010794 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
83010833 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
83010872 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
83010911 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
83010938 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:83015058 original size:26 final size:26
Alignment explanation
Indices: 83015029--83015091 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
83015019 TTACCCCCAG
* *
83015029 TAAAATTTTGATGATTTTACATCTAA
1 TAAAATTTTGACGATTTTACACCTAA
* * *
83015055 TAAAATTTTGGCGATTTTACCCCTAG
1 TAAAATTTTGACGATTTTACACCTAA
83015081 TAAAATTTTGA
1 TAAAATTTTGA
83015092 GAAAATATGT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (26 bp):
TAAAATTTTGACGATTTTACACCTAA
Found at i:83017745 original size:48 final size:48
Alignment explanation
Indices: 83017668--83017803 Score: 121
Period size: 48 Copynumber: 2.8 Consensus size: 48
83017658 CACAGGTGAA
* * ** * **
83017668 AATAATAGTGCTTGGTTACCCGTTTGGGTTAAACCTATATGAATAATG
1 AATAATAGTCCATGGTTACCCGTCAGGGTTAAACCTACACAAATAATG
* *
83017716 AATAATAGTCCATGGTTACCTGTCAGGGTTAAACGTACACAAATAATG
1 AATAATAGTCCATGGTTACCCGTCAGGGTTAAACCTACACAAATAATG
* * * * * *
83017764 AGTAATAGTGTC-TGGATACTCGTTAGGGTTGAACCTACAC
1 AATAATAGT-CCATGGTTACCCGTCAGGGTTAAACCTACAC
83017804 GATAAATAGC
Statistics
Matches: 70, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
48 69 0.99
49 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.31
Consensus pattern (48 bp):
AATAATAGTCCATGGTTACCCGTCAGGGTTAAACCTACACAAATAATG
Found at i:83022809 original size:48 final size:48
Alignment explanation
Indices: 83022685--83022859 Score: 146
Period size: 48 Copynumber: 3.8 Consensus size: 48
83022675 CACATAATAA
** * *
83022685 GATGCCAATGCCATATCCCAAATATGGTCTTACATGGGATCACAGATC
1 GATGCCAATGCCATATCCCAAATATGGTCTTACATGATATCAAATATC
* * * * * **
83022733 GAAGCCGATAGAC-TA--GC---TATGGTCTTACATGATTTCTCATATC
1 GATGCCAAT-GCCATATCCCAAATATGGTCTTACATGATATCAAATATC
* * *
83022776 GATGCTAATGCCATATCCCAAATATGGTATTACATGGTATCAAATATC
1 GATGCCAATGCCATATCCCAAATATGGTCTTACATGATATCAAATATC
* * *
83022824 GATGCCAATGCCATGTCCCAGACATGGTCTTACATG
1 GATGCCAATGCCATATCCCAAATATGGTCTTACATG
83022860 GGATCACACA
Statistics
Matches: 96, Mismatches: 24, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
42 2 0.02
43 29 0.30
45 1 0.01
46 1 0.01
48 61 0.64
49 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAAATATGGTCTTACATGATATCAAATATC
Found at i:83030116 original size:20 final size:21
Alignment explanation
Indices: 83030091--83030137 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
83030081 AAAAATTGTT
*
83030091 AAAAATA-TTAATAATCGTAA
1 AAAAATATTTAAAAATCGTAA
*
83030111 AAAAATATTTAAAAATTGTAA
1 AAAAATATTTAAAAATCGTAA
83030132 AAAAAT
1 AAAAAT
83030138 TAAATATTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (21 bp):
AAAAATATTTAAAAATCGTAA
Found at i:83030125 original size:40 final size:39
Alignment explanation
Indices: 83030081--83030171 Score: 114
Period size: 38 Copynumber: 2.3 Consensus size: 39
83030071 GACAAGACCA
*
83030081 AAAAATTGTTAAAAATATT-AATAATCGTAAAAAAATATTT
1 AAAAATTGTTAAAAAAATTAAAT-ATCGT-AAAAAATATTT
* *
83030121 AAAAATTG-TAAAAAAATTAAATATTGTTAAAAATATTT
1 AAAAATTGTTAAAAAAATTAAATATCGTAAAAAATATTT
*
83030159 TAAAATTGTTAAA
1 AAAAATTGTTAAA
83030172 GAGATATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
38 17 0.38
39 17 0.38
40 11 0.24
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.36
Consensus pattern (39 bp):
AAAAATTGTTAAAAAAATTAAATATCGTAAAAAATATTT
Found at i:83031252 original size:91 final size:91
Alignment explanation
Indices: 83031127--83031311 Score: 244
Period size: 91 Copynumber: 2.0 Consensus size: 91
83031117 ATGATAAATT
** * *
83031127 TACTGGTGGATGAACCATCTGTCTGTGTAGATAAAAGCTACTAATACGTTGTAGATAAACCATTG
1 TACTGGTGGATGAACCATCCATCTGTGCAGATAAAAGCTACTAATACGTTGTAGATAAACCAATG
* * * *
83031192 GTTGAACAGATGACTGTCTACTAGAA
66 GTCGAACAGATGAATGCCGACTAGAA
* * * * *
83031218 TACTGGTGGATGAACTATCCATTTGTGCATATAAAAGCTACTAATATGTTGTCGATAAACCAATG
1 TACTGGTGGATGAACCATCCATCTGTGCAGATAAAAGCTACTAATACGTTGTAGATAAACCAATG
*
83031283 GTCGAGCAGATGAATGCCGACTAGAA
66 GTCGAACAGATGAATGCCGACTAGAA
83031309 TAC
1 TAC
83031312 ACTGTTAAGC
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
91 80 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.29
Consensus pattern (91 bp):
TACTGGTGGATGAACCATCCATCTGTGCAGATAAAAGCTACTAATACGTTGTAGATAAACCAATG
GTCGAACAGATGAATGCCGACTAGAA
Found at i:83031847 original size:34 final size:33
Alignment explanation
Indices: 83031819--83031886 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
83031809 TGTGGCTGGG
* *
83031819 CCATATGGAAGGGTTACATGGCCGTGTGGCCAGA
1 CCATATAGAAGGGTTACACGG-CGTGTGGCCAGA
*
83031853 CCATGTAGAAGGGTTACACGGCGTGTGGCCAGA
1 CCATATAGAAGGGTTACACGGCGTGTGGCCAGA
83031886 C
1 C
83031887 TGTGTGGAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 13 0.42
34 18 0.58
ACGTcount: A:0.24, C:0.22, G:0.35, T:0.19
Consensus pattern (33 bp):
CCATATAGAAGGGTTACACGGCGTGTGGCCAGA
Found at i:83031883 original size:33 final size:34
Alignment explanation
Indices: 83031826--83031903 Score: 113
Period size: 33 Copynumber: 2.3 Consensus size: 34
83031816 GGGCCATATG
*
83031826 GAAGGGTTACATGGCCGTGTGGCCAGACCATGTA
1 GAAGGGTTACACGGCCGTGTGGCCAGACCATGTA
** *
83031860 GAAGGGTTACACGG-CGTGTGGCCAGACTGTGTG
1 GAAGGGTTACACGGCCGTGTGGCCAGACCATGTA
83031893 GAAGGGTTACA
1 GAAGGGTTACA
83031904 TGATTGTATG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 27 0.68
34 13 0.32
ACGTcount: A:0.23, C:0.18, G:0.38, T:0.21
Consensus pattern (34 bp):
GAAGGGTTACACGGCCGTGTGGCCAGACCATGTA
Found at i:83038093 original size:20 final size:19
Alignment explanation
Indices: 83038068--83038166 Score: 90
Period size: 20 Copynumber: 4.9 Consensus size: 19
83038058 TTGGTTCACA
83038068 AATTTTTAATAATTATTTAC
1 AATTTTTAATAATT-TTTAC
* *
83038088 AATTTTTTAATAACTTTCAC
1 AA-TTTTTAATAATTTTTAC
* *
83038108 AAATTTTAATAATTTTTAAA
1 AATTTTTAATAATTTTT-AC
* *
83038128 AATTTTAAATAATGTTTTAT
1 AATTTTTAATAAT-TTTTAC
*
83038148 AATTTTAAATAACTTTTTA
1 AATTTTTAATAA-TTTTTA
83038167 AACAATTTTA
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
19 12 0.18
20 38 0.58
21 16 0.24
ACGTcount: A:0.41, C:0.05, G:0.01, T:0.53
Consensus pattern (19 bp):
AATTTTTAATAATTTTTAC
Found at i:83038116 original size:19 final size:19
Alignment explanation
Indices: 83038062--83038140 Score: 77
Period size: 19 Copynumber: 3.9 Consensus size: 19
83038052 ATGCCATTGG
83038062 TTCACAAATTTTTAATAATT
1 TTCACAAA-TTTTAATAATT
* * *
83038082 ATTTACAATTTTTTAATAACT
1 -TTCACAA-ATTTTAATAATT
83038103 TTCACAAATTTTAATAATT
1 TTCACAAATTTTAATAATT
* *
83038122 TTTAAAAATTTTAAATAAT
1 TTCACAAATTTT-AATAAT
83038141 GTTTTATAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
19 20 0.42
20 12 0.25
21 16 0.33
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (19 bp):
TTCACAAATTTTAATAATT
Found at i:83038126 original size:10 final size:10
Alignment explanation
Indices: 83038068--83038167 Score: 73
Period size: 10 Copynumber: 9.9 Consensus size: 10
83038058 TTGGTTCACA
83038068 AATTTTTAAT
1 AATTTTTAAT
83038078 AATTATTTACA-
1 AATT-TTTA-AT
*
83038089 ATTTTTTAAT
1 AATTTTTAAT
* *
83038099 AACTTTCACA-
1 AATTTTTA-AT
83038109 AA-TTTTAAT
1 AATTTTTAAT
*
83038118 AATTTTTAAA
1 AATTTTTAAT
*
83038128 AATTTTAAAT
1 AATTTTTAAT
83038138 AATGTTTT-AT
1 AAT-TTTTAAT
*
83038148 AATTTTAAAT
1 AATTTTTAAT
83038158 AACTTTTTAA
1 AA-TTTTTAA
83038168 ACAATTTTAA
Statistics
Matches: 70, Mismatches: 11, Indels: 17
0.71 0.11 0.17
Matches are distributed among these distances:
8 1 0.01
9 10 0.14
10 41 0.59
11 17 0.24
12 1 0.01
ACGTcount: A:0.42, C:0.05, G:0.01, T:0.52
Consensus pattern (10 bp):
AATTTTTAAT
Found at i:83038165 original size:12 final size:11
Alignment explanation
Indices: 83038111--83038183 Score: 68
Period size: 10 Copynumber: 7.0 Consensus size: 11
83038101 CTTTCACAAA
83038111 TTTT-AATAAT
1 TTTTAAATAAT
83038121 TTTTAAA-AA-
1 TTTTAAATAAT
83038130 TTTTAAATAAT
1 TTTTAAATAAT
83038141 GTTTT--ATAA-
1 -TTTTAAATAAT
83038150 TTTTAAATAACT
1 TTTTAAATAA-T
*
83038162 TTTTAAACAAT
1 TTTTAAATAAT
*
83038173 TTTAAAATAAT
1 TTTTAAATAAT
83038184 AAAAAATTAA
Statistics
Matches: 52, Mismatches: 3, Indels: 15
0.74 0.04 0.21
Matches are distributed among these distances:
8 4 0.08
9 7 0.13
10 16 0.31
11 12 0.23
12 13 0.25
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (11 bp):
TTTTAAATAAT
Found at i:83038253 original size:16 final size:16
Alignment explanation
Indices: 83038232--83038263 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
83038222 ACAAGTTTTA
*
83038232 AATATTTTTAAATATT
1 AATATTTTAAAATATT
83038248 AATATTTTAAAATATT
1 AATATTTTAAAATATT
83038264 TTTTACGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATATTTTAAAATATT
Found at i:83039708 original size:42 final size:42
Alignment explanation
Indices: 83039591--83039740 Score: 115
Period size: 42 Copynumber: 3.6 Consensus size: 42
83039581 AGTTATCATG
* * ** * * *
83039591 TAAGACCATATCTGGGATATGGTGTTGATATTAGATTTCGTA
1 TAAGACCATATCTAGGACATGGCATCGATATGAGAATTCGTA
* * * * *
83039633 T-AGACCATGTCTAGGACATGTCGTCAAAATGAGAATTCGTA
1 TAAGACCATATCTAGGACATGGCATCGATATGAGAATTCGTA
* * * *
83039674 TAAGACCATATCTAGGATATGGCATCGATCTGAG-ATTCCATG
1 TAAGACCATATCTAGGACATGGCATCGATATGAGAATT-CGTA
* *
83039716 TAAGACCATGTCTGGGACATGGCAT
1 TAAGACCATATCTAGGACATGGCAT
83039741 TGGCATCTTA
Statistics
Matches: 84, Mismatches: 22, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
41 34 0.40
42 50 0.60
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (42 bp):
TAAGACCATATCTAGGACATGGCATCGATATGAGAATTCGTA
Found at i:83043619 original size:42 final size:42
Alignment explanation
Indices: 83043541--83043621 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
83043531 GTGCAAGGTT
* *
83043541 CACACGGCCAAGACACAAGCCCATGTTTTAGGCCGTGTGGCA
1 CACACGGCCAAGACACAAGCCCATGTTCTAGCCCGTGTGGCA
** *
83043583 CACACGGCTGAGACACACGCCCATGTCTCT-GCCCGTGTG
1 CACACGGCCAAGACACAAGCCCATGT-TCTAGCCCGTGTG
83043622 CTTAATTTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.22, C:0.35, G:0.26, T:0.17
Consensus pattern (42 bp):
CACACGGCCAAGACACAAGCCCATGTTCTAGCCCGTGTGGCA
Found at i:83043870 original size:22 final size:23
Alignment explanation
Indices: 83043825--83043870 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
83043815 TCCAAATACC
83043825 AACCAATTCAAGCATTATAACAT
1 AACCAATTCAAGCATTATAACAT
*
83043848 AACCAATTCAAGCA-TCTAACAT
1 AACCAATTCAAGCATTATAACAT
83043870 A
1 A
83043871 GTATATCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.48, C:0.24, G:0.04, T:0.24
Consensus pattern (23 bp):
AACCAATTCAAGCATTATAACAT
Found at i:83059730 original size:16 final size:16
Alignment explanation
Indices: 83059688--83059722 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
83059678 ATCTGGCTAA
*
83059688 ACCCAAAAAACTGTAT
1 ACCCAAAAAACTGGAT
83059704 ACCCAAAAAACTGGAT
1 ACCCAAAAAACTGGAT
83059720 ACC
1 ACC
83059723 TTAAAAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.29, G:0.09, T:0.14
Consensus pattern (16 bp):
ACCCAAAAAACTGGAT
Found at i:83062362 original size:42 final size:43
Alignment explanation
Indices: 83062290--83062399 Score: 109
Period size: 42 Copynumber: 2.6 Consensus size: 43
83062280 CCATATCAAT
* * * * *
83062290 GCCATATCT-CGGATATGGTCTTACATGAAAT-ATCATATCGAC
1 GCCATATCTCCAGACATGGTCTTATACGAAATCA-CATACCGAC
* * *
83062332 GCCATGTC-CCTGACATGGTCTTATACGAAATCACATACCGAT
1 GCCATATCTCCAGACATGGTCTTATACGAAATCACATACCGAC
*
83062374 GCCATATCTCCAGATATGGTCTTATA
1 GCCATATCTCCAGACATGGTCTTATA
83062400 TAGCCATGTC
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 39 0.71
43 16 0.29
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (43 bp):
GCCATATCTCCAGACATGGTCTTATACGAAATCACATACCGAC
Found at i:83062445 original size:70 final size:70
Alignment explanation
Indices: 83062332--83062472 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
83062322 TCATATCGAC
83062332 GCCATGTCCCTGACATGGTCTTATACGAAATCACATACCGATGCCATATCTCCAGATATGGTCTT
1 GCCATGTCCCTGACATGGTCTTATACGAAATCACATACCGATGCCATATCTCCAGATATGGTCTT
83062397 ATATA
66 ATATA
83062402 GCCATGTCCCTGACATGGTCTTATACGAAATCACATACCGATGCCATATCTCCAGATATGGTCTT
1 GCCATGTCCCTGACATGGTCTTATACGAAATCACATACCGATGCCATATCTCCAGATATGGTCTT
83062467 ATATA
66 ATATA
83062472 G
1 G
83062473 AATCACATAC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (70 bp):
GCCATGTCCCTGACATGGTCTTATACGAAATCACATACCGATGCCATATCTCCAGATATGGTCTT
ATATA
Found at i:83062519 original size:42 final size:42
Alignment explanation
Indices: 83062402--83062554 Score: 216
Period size: 42 Copynumber: 3.6 Consensus size: 42
83062392 GTCTTATATA
* * * *
83062402 GCCATGTCCCTGACATGGTCTTATACGAAATCACATACCGAT
1 GCCATATCCCAGATATGGTCTTATACAAAATCACATACCGAT
* *
83062444 GCCATATCTCCAGATATGGTCTTATATAGAATCACATACCGAT
1 GCCATATC-CCAGATATGGTCTTATACAAAATCACATACCGAT
*
83062487 GCCATATCCCAGATATGGTCTTATACAAAATCACATATCGAT
1 GCCATATCCCAGATATGGTCTTATACAAAATCACATACCGAT
* *
83062529 TCCATATCCCATATATGGTCTTATAC
1 GCCATATCCCAGATATGGTCTTATAC
83062555 GGAATCCCGG
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 62 0.63
43 37 0.37
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTATACAAAATCACATACCGAT
Found at i:83074270 original size:21 final size:21
Alignment explanation
Indices: 83074246--83074301 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 21
83074236 TACTTTAGCC
*
83074246 ATTTATTTTTCTTGC-AATTTA
1 ATTTATTTTTCTTACTAA-TTA
*
83074267 ATTT-TATTTTATTACTAATTA
1 ATTTAT-TTTTCTTACTAATTA
83074288 ATTTACTTTTTCTT
1 ATTTA-TTTTTCTT
83074302 TCTCTTAGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
20 1 0.04
21 18 0.64
22 8 0.29
23 1 0.04
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
ATTTATTTTTCTTACTAATTA
Found at i:83077656 original size:17 final size:17
Alignment explanation
Indices: 83077634--83077666 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
83077624 CTTTTATTAA
83077634 GTTTTTAAGATTCATTC
1 GTTTTTAAGATTCATTC
*
83077651 GTTTTTAAGCTTCATT
1 GTTTTTAAGATTCATT
83077667 TGTTCTCCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.55
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:83084371 original size:18 final size:18
Alignment explanation
Indices: 83084340--83084394 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
83084330 TGTAAAAACT
*
83084340 TTTTTAAGTA-ATAATT-
1 TTTTTAAATATATAATTA
83084356 TTTAATTAAAT-TATAATTA
1 TTT--TTAAATATATAATTA
83084375 TTTTTAAATATATAATTA
1 TTTTTAAATATATAATTA
83084393 TT
1 TT
83084395 ACAAAATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
16 3 0.09
17 6 0.18
18 21 0.64
19 3 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
TTTTTAAATATATAATTA
Found at i:83084395 original size:21 final size:21
Alignment explanation
Indices: 83084348--83084395 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
83084338 CTTTTTTAAG
* * *
83084348 TAATAATTTTTAATTAAATTA
1 TAATTATTTTTAAATAAATAA
*
83084369 TAATTATTTTTAAATATATAA
1 TAATTATTTTTAAATAAATAA
*
83084390 TTATTA
1 TAATTA
83084396 CAAAATTTAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TAATTATTTTTAAATAAATAA
Found at i:83086689 original size:21 final size:21
Alignment explanation
Indices: 83086647--83086689 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
83086637 TATTTATACT
*
83086647 ATTTAAAATATAAAATATTTA
1 ATTTAAAATATAAAATAATTA
83086668 ATTTAAAATCATAAAA-AATTA
1 ATTTAAAAT-ATAAAATAATTA
83086689 A
1 A
83086690 AATTAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (21 bp):
ATTTAAAATATAAAATAATTA
Found at i:83086695 original size:22 final size:21
Alignment explanation
Indices: 83086649--83086695 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
83086639 TTTATACTAT
* * *
83086649 TTAAAATATAAAATATTTAAT
1 TTAAAATATAAAAAATTAAAA
83086670 TTAAAATCATAAAAAATTAAAA
1 TTAAAAT-ATAAAAAATTAAAA
83086692 TTAA
1 TTAA
83086696 TTATTCAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
TTAAAATATAAAAAATTAAAA
Found at i:83087139 original size:27 final size:27
Alignment explanation
Indices: 83087109--83087190 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
83087099 TTAAATTTAT
83087109 TTTAAATTTAAATTAATGGGATGAAAA
1 TTTAAATTTAAATTAATGGGATGAAAA
* *
83087136 TTTAAATTTAAA-TAATTGCATCG--AA
1 TTTAAATTTAAATTAATGGGAT-GAAAA
* * *
83087161 TTTAAATTTAAATTATTGGGGTCAAAA
1 TTTAAATTTAAATTAATGGGATGAAAA
83087188 TTT
1 TTT
83087191 TGAGTGGATC
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
25 14 0.32
26 12 0.27
27 18 0.41
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (27 bp):
TTTAAATTTAAATTAATGGGATGAAAA
Found at i:83100915 original size:61 final size:58
Alignment explanation
Indices: 83100807--83100922 Score: 160
Period size: 61 Copynumber: 1.9 Consensus size: 58
83100797 ATCACTTTAA
* *
83100807 TATTAAATTAATATAATAATTATCAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATAAAATAATTATCAAGATAAATATTAAATTAAATTTAATATTAAATC
* * *
83100865 TATTAAATTAATAAAATATTTATCTATAAGATAAGTATTAAATTTAATTTAATATTAA
1 TATTAAATTAATAAAATAATTATC---AAGATAAATATTAAATTAAATTTAATATTAA
83100923 GATAATATGT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 22 0.44
61 28 0.56
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (58 bp):
TATTAAATTAATAAAATAATTATCAAGATAAATATTAAATTAAATTTAATATTAAATC
Found at i:83102240 original size:78 final size:78
Alignment explanation
Indices: 83102111--83102269 Score: 300
Period size: 78 Copynumber: 2.0 Consensus size: 78
83102101 ATACACAAGT
83102111 CATGTACCTAACATATCGGCTATGGGCTCAATCATATTTAGAACATAAGCCTCTACTTATATCAA
1 CATGTACCTAACATATCGGCTATGGGCTCAATCATATTTAGAACATAAGCCTCTACTTATATCAA
83102176 AGAACATGAGTTA
66 AGAACATGAGTTA
*
83102189 CATGTACCTAACATATCGGCTATGGGCTCAATCATATTTATAACATAAGCCTCTACTTATATCAA
1 CATGTACCTAACATATCGGCTATGGGCTCAATCATATTTAGAACATAAGCCTCTACTTATATCAA
*
83102254 AGCACATGAGTTA
66 AGAACATGAGTTA
83102267 CAT
1 CAT
83102270 ACACATGGTC
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.30
Consensus pattern (78 bp):
CATGTACCTAACATATCGGCTATGGGCTCAATCATATTTAGAACATAAGCCTCTACTTATATCAA
AGAACATGAGTTA
Found at i:83104682 original size:40 final size:40
Alignment explanation
Indices: 83104623--83104767 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
83104613 CTCGCACAAG
* * * * *
83104623 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
83104663 GCCTTCAGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
83104703 GCTTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
83104744 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
83104768 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:83112905 original size:29 final size:29
Alignment explanation
Indices: 83112863--83112920 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
83112853 GCAACCCATT
* *
83112863 TTTATTATCATATCGAAACGCTATTCCTA
1 TTTATTATCATATCAAAACACTATTCCTA
83112892 TTTATTATCATATCAAAACACTATTCCTA
1 TTTATTATCATATCAAAACACTATTCCTA
83112921 ATAGAAGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.41
Consensus pattern (29 bp):
TTTATTATCATATCAAAACACTATTCCTA
Found at i:83115018 original size:18 final size:18
Alignment explanation
Indices: 83114997--83115076 Score: 99
Period size: 18 Copynumber: 4.4 Consensus size: 18
83114987 GATGATATCA
* *
83114997 ATATTGATGATGGTGATG
1 ATATTGATGATAGTGACG
*
83115015 ATATTGATGGTAGTGACG
1 ATATTGATGATAGTGACG
*
83115033 ATATTGATGCTAGTGACG
1 ATATTGATGATAGTGACG
*
83115051 CTATTGATGATAGTGAC-
1 ATATTGATGATAGTGACG
83115068 ACTATTGAT
1 A-TATTGAT
83115077 CGTGACCTTG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
18 54 1.00
ACGTcount: A:0.29, C:0.07, G:0.28, T:0.36
Consensus pattern (18 bp):
ATATTGATGATAGTGACG
Found at i:83115022 original size:9 final size:9
Alignment explanation
Indices: 83114997--83115062 Score: 51
Period size: 9 Copynumber: 7.3 Consensus size: 9
83114987 GATGATATCA
83114997 ATATTGATG
1 ATATTGATG
**
83115006 ATGGTGATG
1 ATATTGATG
83115015 ATATTGATG
1 ATATTGATG
* * *
83115024 GTAGTGACG
1 ATATTGATG
83115033 ATATTGATG
1 ATATTGATG
* * *
83115042 CTAGTGACG
1 ATATTGATG
*
83115051 CTATTGATG
1 ATATTGATG
83115060 ATA
1 ATA
83115063 GTGACACTAT
Statistics
Matches: 41, Mismatches: 16, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.36
Consensus pattern (9 bp):
ATATTGATG
Found at i:83115040 original size:36 final size:35
Alignment explanation
Indices: 83114983--83115076 Score: 102
Period size: 36 Copynumber: 2.7 Consensus size: 35
83114973 AAGGTTTTCT
* * *
83114983 TATTGATGATA-TCA-ATATTGATGATGGTGATGA
1 TATTGATGATAGTGACATATTGATGATAGTGACGA
* * *
83115016 TATTGATGGTAGTGACGATATTGATGCTAGTGACGC
1 TATTGATGATAGTGAC-ATATTGATGATAGTGACGA
83115052 TATTGATGATAGTGACACTATTGAT
1 TATTGATGATAGTGACA-TATTGAT
83115077 CGTGACCTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
33 10 0.20
34 2 0.04
35 1 0.02
36 37 0.74
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (35 bp):
TATTGATGATAGTGACATATTGATGATAGTGACGA
Found at i:83121880 original size:49 final size:49
Alignment explanation
Indices: 83121807--83121927 Score: 147
Period size: 49 Copynumber: 2.4 Consensus size: 49
83121797 AGATGTTGAC
* *
83121807 GCCATGTCCTAGACATGGTCTTACACTGGCTT-TTATATAGCGA-GGCTGAT
1 GCCATGTCCTAGACA-GGTCTTACACTGG-TTCTCATATAGCGATGAC-GAT
* * * *
83121857 GCCATGTCCCAGAGAGGTCTTACACTGGTTCTCATCTATCGATGACGAT
1 GCCATGTCCTAGACAGGTCTTACACTGGTTCTCATATAGCGATGACGAT
83121906 GCCATGTCCTAGACAGGTCTTA
1 GCCATGTCCTAGACAGGTCTTA
83121928 TAGTAACACA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
48 2 0.03
49 44 0.72
50 15 0.25
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (49 bp):
GCCATGTCCTAGACAGGTCTTACACTGGTTCTCATATAGCGATGACGAT
Found at i:83122011 original size:48 final size:46
Alignment explanation
Indices: 83121952--83122166 Score: 220
Period size: 46 Copynumber: 4.6 Consensus size: 46
83121942 AAGCCGACGC
* * * *
83121952 CATGTCCCAGACAGGTCTTACACTAGCTTGTCTACCGCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-T-TCTATCTCGAGGCCGATG
* * * *
83122000 CATGTCCCAGACATGTCTTACATTAGC-TCTAATCTCAATGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCTTCT-ATCTCGAGGCCGATG
* * *
83122046 CATGTCCCAAACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT--CTATCTCGAGGCCGATG
* * *
83122094 CATGTCCCAGACATGTCTTACACTGGCTCTCATAT-T-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TC-TATCTCGAGGCCGATG
83122140 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
83122167 ACACATATCA
Statistics
Matches: 141, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
45 3 0.02
46 67 0.48
47 2 0.01
48 67 0.48
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTATCTCGAGGCCGATG
Found at i:83122060 original size:46 final size:47
Alignment explanation
Indices: 83121952--83122166 Score: 186
Period size: 48 Copynumber: 4.6 Consensus size: 47
83121942 AAGCCGACGC
* ** * * * * *
83121952 CATGTCCCAGACAGGTCTTACACTAGCTTGTCTACCGCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-AATATCTCAAGGCCGATA
* *
83122000 CATGTCCCAGACATGTCTTACATTAGCTCT-A-ATCTCAATGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCT-TAATATCTCAAGGCCGATA
* * * *
83122046 CATGTCCCAAACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-AATATCTCAAGGCCGATA
* * ** * *
83122094 CATGTCCCAGACATGTCTTACACTGGCTCTCATAT-T-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TAATATCTCAAGGCCGATA
83122140 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
83122167 ACACATATCA
Statistics
Matches: 142, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
46 68 0.48
47 2 0.01
48 69 0.49
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAATATCTCAAGGCCGATA
Found at i:83122068 original size:94 final size:94
Alignment explanation
Indices: 83121952--83122166 Score: 261
Period size: 94 Copynumber: 2.3 Consensus size: 94
83121942 AAGCCGACGC
* *** *
83121952 CATGTCCCAGACAGGTCTTACACTAGCTTGTCTACCGCGAGGCTGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATACCGCGAGGCCGATGCATGTCCCAGACATGTC
* *
83122017 TTACATTAGCTCTAATCTCAAT-GCCGATA
66 TTACACTAGCTCTAATAT-AATGGCCGATA
* * * *
83122046 CATGTCCCAAACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATACCGCGAGGCCGATGCATGTCCCAGACATGTC
* * ** * *
83122111 TTACACTGGCTCTCATATTGTGGCTGATG
66 TTACACTAGCTCTAATATAATGGCCGATA
83122140 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
83122167 ACACATATCA
Statistics
Matches: 101, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
93 1 0.01
94 100 0.99
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATACCGCGAGGCCGATGCATGTCCCAGACATGTC
TTACACTAGCTCTAATATAATGGCCGATA
Found at i:83124961 original size:19 final size:18
Alignment explanation
Indices: 83124937--83124984 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
83124927 ATTCCAGACT
83124937 AATTTGAAACAAAATAAAA
1 AATTTGAAA-AAAATAAAA
* **
83124956 AATTTGGAAAAATATGCAA
1 AATTT-GAAAAAAATAAAA
83124975 AATTTGAAAA
1 AATTTGAAAA
83124985 TAGGGGTCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 5 0.20
19 16 0.64
20 4 0.16
ACGTcount: A:0.60, C:0.04, G:0.10, T:0.25
Consensus pattern (18 bp):
AATTTGAAAAAAATAAAA
Found at i:83126970 original size:33 final size:33
Alignment explanation
Indices: 83126933--83126995 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
83126923 GGTACAATTT
**
83126933 GAAAAGGTTAGGTATACTTTGTGTATACCATAC
1 GAAAAGGAAAGGTATACTTTGTGTATACCATAC
83126966 GAAAAGGAAAGGTATACTTTGTGTATACCA
1 GAAAAGGAAAGGTATACTTTGTGTATACCA
83126996 CTTAATAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (33 bp):
GAAAAGGAAAGGTATACTTTGTGTATACCATAC
Found at i:83127036 original size:66 final size:66
Alignment explanation
Indices: 83126966--83127104 Score: 147
Period size: 66 Copynumber: 2.1 Consensus size: 66
83126956 TATACCATAC
* * *
83126966 GAAAAGGAAAGGTATACTTTGTGTATACCACTTAATAAAGGAAAAGTACACTAT-ATGTGTA-CA
1 GAAAAGGAAAGGTACACTTTGTGTATACAAATTAA-AAAGGAAAAGTACACT-TCATGTGTACCA
83127029 CTT
64 CTT
** * * * ** *
83127032 GAAAAGGTTATGTACACTTTGTGTGTACAAATTGAAAAGGGTATGTACACTTCATGTGTACCACT
1 GAAAAGGAAAGGTACACTTTGTGTATACAAATTAAAAAGGAAAAGTACACTTCATGTGTACCACT
83127097 T
66 T
83127098 GAAAAGG
1 GAAAAGG
83127105 GAGTGTGCAC
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
64 1 0.02
65 20 0.33
66 39 0.65
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.29
Consensus pattern (66 bp):
GAAAAGGAAAGGTACACTTTGTGTATACAAATTAAAAAGGAAAAGTACACTTCATGTGTACCACT
T
Found at i:83127090 original size:33 final size:32
Alignment explanation
Indices: 83127011--83127105 Score: 120
Period size: 33 Copynumber: 2.9 Consensus size: 32
83127001 TAAAGGAAAA
*
83127011 GTACACTATATGTGTAC-ACTTGAAAAGGTTAT
1 GTACACT-TATGTGTACAACTTGAAAAGGGTAT
* *
83127043 GTACACTTTGTGTGTACAAATTGAAAAGGGTAT
1 GTACAC-TTATGTGTACAACTTGAAAAGGGTAT
*
83127076 GTACACTTCATGTGTACCACTTGAAAAGGG
1 GTACACTT-ATGTGTACAACTTGAAAAGGG
83127106 AGTGTGCACC
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
32 16 0.30
33 38 0.70
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.32
Consensus pattern (32 bp):
GTACACTTATGTGTACAACTTGAAAAGGGTAT
Found at i:83130438 original size:23 final size:23
Alignment explanation
Indices: 83130408--83130455 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
83130398 TACAAGAAAG
*
83130408 TATGTTCGGGTATTGCACTTTCA
1 TATGTTCGGGTATTGCACCTTCA
83130431 TATGTTCGGGTATTGCACCTTCA
1 TATGTTCGGGTATTGCACCTTCA
83130454 TA
1 TA
83130456 GATTCTTCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.42
Consensus pattern (23 bp):
TATGTTCGGGTATTGCACCTTCA
Found at i:83137670 original size:19 final size:19
Alignment explanation
Indices: 83137646--83137685 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
83137636 ACCTTATGAG
*
83137646 GCGTTATATGGCTGAAAGT
1 GCGTTATATGGCCGAAAGT
83137665 GCGTTATATGGCCGAAAGT
1 GCGTTATATGGCCGAAAGT
83137684 GC
1 GC
83137686 CAGACTCCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.28
Consensus pattern (19 bp):
GCGTTATATGGCCGAAAGT
Found at i:83159739 original size:27 final size:27
Alignment explanation
Indices: 83159695--83159958 Score: 234
Period size: 27 Copynumber: 9.8 Consensus size: 27
83159685 AGACCTCAGT
* *
83159695 TTGTAAAATTACCAAAATACCCTTAGA
1 TTGTAAAATTACCGAAATACCCCTAGA
* *
83159722 TTGTAAAATTATCGAAATA-CCCTCGA
1 TTGTAAAATTACCGAAATACCCCTAGA
**
83159748 TTTGTAAAATTACTAAAAT-CCCCTA-A
1 -TTGTAAAATTACCGAAATACCCCTAGA
* * *
83159774 TTTGTAAAATTATCGAAATACCCCCCAGC
1 -TTGTAAAATTACCGAAATA-CCCCTAGA
* *
83159803 TTGTAAAATTACCGAAATACCCTTAGT
1 TTGTAAAATTACCGAAATACCCCTAGA
* *
83159830 TTGTAAAATTACTGAAATA-CCCTCGGA
1 TTGTAAAATTACCGAAATACCCCT-AGA
* *
83159857 TTGTAAAATTACCAAAATACCCCCA-A
1 TTGTAAAATTACCGAAATACCCCTAGA
* * *
83159883 TTTGTAAAATTACTGAAACA-CCCTCGA
1 -TTGTAAAATTACCGAAATACCCCTAGA
* * ** *
83159910 TTGCAAAACTATTGAAATACCCCTAGT
1 TTGTAAAATTACCGAAATACCCCTAGA
83159937 TTGTAAAATTACCGAAATACCC
1 TTGTAAAATTACCGAAATACCC
83159959 TTGTAGTGTA
Statistics
Matches: 187, Mismatches: 40, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
26 44 0.24
27 117 0.63
28 26 0.14
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCGAAATACCCCTAGA
Found at i:83159833 original size:81 final size:80
Alignment explanation
Indices: 83159694--83159958 Score: 302
Period size: 81 Copynumber: 3.3 Consensus size: 80
83159684 AAGACCTCAG
** *
83159694 TTTGTAAAATTACCAAAATACCCTTAGATTGTAAAATTATCGAAATACCCTCGATTTGTAAAATT
1 TTTGTAAAATTACCAAAATACCCCCAGATTGTAAAATTACCGAAATACCCTCG-TTTGTAAAATT
*
83159759 ACTAAAAT-CCCCTAA
65 ACTGAAATACCCCTAA
* * * *
83159774 TTTGTAAAATTATCGAAATACCCCCCAGCTTGTAAAATTACCGAAATACCCTTAGTTTGTAAAAT
1 TTTGTAAAATTACCAAAATA-CCCCCAGATTGTAAAATTACCGAAATACCC-TCGTTTGTAAAAT
**
83159839 TACTGAAATACCCTCGGA
64 TACTGAAATACCC-CTAA
* * * * *
83159857 -TTGTAAAATTACCAAAATACCCCCA-ATTTGTAAAATTACTGAAACACCCTCGATTGCAAAACT
1 TTTGTAAAATTACCAAAATACCCCCAGA-TTGTAAAATTACCGAAATACCCTCGTTTGTAAAATT
* *
83159920 ATTGAAATACCCCTAG
65 ACTGAAATACCCCTAA
*
83159936 TTTGTAAAATTACCGAAATACCC
1 TTTGTAAAATTACCAAAATACCC
83159959 TTGTAGTGTA
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
79 1 0.01
80 60 0.39
81 70 0.45
82 22 0.14
83 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (80 bp):
TTTGTAAAATTACCAAAATACCCCCAGATTGTAAAATTACCGAAATACCCTCGTTTGTAAAATTA
CTGAAATACCCCTAA
Found at i:83159981 original size:53 final size:53
Alignment explanation
Indices: 83159695--83159986 Score: 309
Period size: 54 Copynumber: 5.5 Consensus size: 53
83159685 AGACCTCAGT
* * * *
83159695 TTGTAAAATTACCAAAATACCCTTAGATTGTAAAATTATCGAAATACCCTCGA
1 TTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTCGA
* * * *
83159748 TTTGTAAAATTACTAAAAT-CCCCTAATTTGTAAAATTATCGAAATACCCCCCAGC
1 -TTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCGAAATA-CCCTC-GA
** * *
83159803 TTGTAAAATTACCGAAATACCCTTAGTTTGTAAAATTACTGAAATACCCTCGGA
1 TTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTC-GA
* * * * *
83159857 TTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTACTGAAACACCCTCGA
1 TTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTCGA
* * * * *
83159910 TTGCAAAACTATTGAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTTGTA
1 TTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTCG-A
* *
83159964 GTGT-AAATTATTAAAATACCCCT
1 TTGTAAAATTACTAAAATACCCCT
83159987 GTAAGGTAAA
Statistics
Matches: 200, Mismatches: 34, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
53 85 0.43
54 91 0.46
55 24 0.12
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (53 bp):
TTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTCGA
Found at i:83170068 original size:25 final size:25
Alignment explanation
Indices: 83170011--83170068 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
83170001 ACATAAATGC
*
83170011 AACTCTTTGTGAGCTTCCTGATTAA
1 AACTCTTTGTGAACTTCCTGATTAA
*
83170036 AAGTTCTTTGTGAACTTCCT-ATTATA
1 AA-CTCTTTGTGAACTTCCTGATTA-A
*
83170062 GACTCTT
1 AACTCTT
83170069 CTGAGTTTCC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
25 10 0.37
26 17 0.63
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (25 bp):
AACTCTTTGTGAACTTCCTGATTAA
Found at i:83179433 original size:63 final size:63
Alignment explanation
Indices: 83179334--83179459 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
83179324 TTTTATACTT
*
83179334 AGGCAAGCATAGGAGAGCGAAAGGAACGAGAAACGGGCCAAAAAACGGAGAAAGTAGGCCAAA
1 AGGCAAGCATAGGAGAGCGAAAGAAACGAGAAACGGGCCAAAAAACGGAGAAAGTAGGCCAAA
*
83179397 AGGCAAGCATAGGAGAGCGAAAGAAACGAGAAACGGGCCAAAAAACGGAGAACGTAGGCCAAA
1 AGGCAAGCATAGGAGAGCGAAAGAAACGAGAAACGGGCCAAAAAACGGAGAAAGTAGGCCAAA
83179460 GTACGAAATT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.48, C:0.17, G:0.33, T:0.03
Consensus pattern (63 bp):
AGGCAAGCATAGGAGAGCGAAAGAAACGAGAAACGGGCCAAAAAACGGAGAAAGTAGGCCAAA
Found at i:83184640 original size:19 final size:20
Alignment explanation
Indices: 83184616--83184653 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
83184606 GGTACCACCA
83184616 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
83184635 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
83184654 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:83185413 original size:30 final size:30
Alignment explanation
Indices: 83185379--83185438 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
83185369 ATTTAATACG
*
83185379 AACTTTTGAAAAATTACACTTTTTCCCCTA
1 AACTTTTGAAAAATTACACTTTTGCCCCTA
* *
83185409 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTGAAAAATTACACTTTTGCCCCTA
83185439 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTTGAAAAATTACACTTTTGCCCCTA
Found at i:83190005 original size:36 final size:36
Alignment explanation
Indices: 83189958--83190031 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
83189948 GTGATTAAAC
83189958 GATGATTCGACATTTGAAATCCCGGTTGAACCTTAG
1 GATGATTCGACATTTGAAATCCCGGTTGAACCTTAG
*
83189994 GATGATTCGACATTTGAAATCTCGGTTGAACCTTAG
1 GATGATTCGACATTTGAAATCCCGGTTGAACCTTAG
83190030 GA
1 GA
83190032 ATAGTTTAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (36 bp):
GATGATTCGACATTTGAAATCCCGGTTGAACCTTAG
Found at i:83201327 original size:16 final size:16
Alignment explanation
Indices: 83201308--83201338 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83201298 CTTCTTCACT
83201308 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
83201324 TACTTACTTACTTAA
1 TACTCACTTACTTAA
83201339 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:83201344 original size:20 final size:20
Alignment explanation
Indices: 83201305--83201344 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
83201295 AAACTTCTTC
* *
83201305 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
83201325 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
83201345 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:83201718 original size:55 final size:53
Alignment explanation
Indices: 83201533--83201721 Score: 181
Period size: 53 Copynumber: 3.6 Consensus size: 53
83201523 CGGGTACCTT
* * * * * *
83201533 ACCATTGCCATGTCTTGTCATGGTCTTACGT-GG--TA-T-CCTTTTGAAGCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGACCATTGCCTTATGAA-CTC
* * *
83201582 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGACCATTGCCTTATGAACTC
* * * * *
83201635 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGACCATTGCCTTAT-G-AACTC
*
83201690 ATCAATGCCATGTCTTGACATGGTCTTACATG
1 ACCAATGCCATGTCTTGACATGGTCTTACATG
83201722 ATTTCCTTGC
Statistics
Matches: 116, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
49 29 0.25
50 1 0.01
52 1 0.01
53 43 0.37
54 9 0.08
55 33 0.28
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.37
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGGACCATTGCCTTATGAACTC
Found at i:83201735 original size:55 final size:53
Alignment explanation
Indices: 83201530--83201784 Score: 204
Period size: 55 Copynumber: 4.8 Consensus size: 53
83201520 ACGCGGGTAC
* * * *
83201530 CTTACCATTGCCATGTCTTGTCATGGTCTTACGTGGTATCC-T---TT-T-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAGAA
* * *
83201578 GCTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTAT-GAA
1 -CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAGAA
* * * *
83201632 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCC-TTGCCTTATAG-AA
* * * *
83201687 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-TATCCTTGCCTTATAGAA
* *
83201740 CCTTACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACAT-GTATCCTT
83201785 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 1 0.01
53 45 0.26
54 13 0.08
55 69 0.41
56 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGTATCCTTGCCTTATAGAA
Found at i:83208901 original size:16 final size:16
Alignment explanation
Indices: 83208882--83208912 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83208872 CTTCTTCACT
83208882 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
83208898 TACTTACTTACTTAA
1 TACTCACTTACTTAA
83208913 TCAAATTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Done.