Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 25 of 284
Found at i:8619849 original size:40 final size:40
Alignment explanation
Indices: 8619805--8620080 Score: 435
Period size: 40 Copynumber: 6.9 Consensus size: 40
8619795 GAATACACAT
* *
8619805 CACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
8619845 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
8619885 CACCAGCACGAATGCTCTTCGGAACTTAGCCCCGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
8619925 CACCAGCACGAATGCTCTTTGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
8619965 CACCAGCATGTATGCTCTTCAGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
8620005 CACCAGCATGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
8620045 CTCCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
8620081 CATCGGCGAG
Statistics
Matches: 219, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 219 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:8624844 original size:22 final size:20
Alignment explanation
Indices: 8624804--8624844 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
8624794 AGTCCTATTA
*
8624804 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
8624824 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
8624845 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:8628193 original size:27 final size:27
Alignment explanation
Indices: 8628162--8628214 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
8628152 CCCTAATTGA
* * *
8628162 TAAAATGAGTGTTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCCTATGTGG
8628189 TAAAATGACTGTTTTGCCCCTATGTG
1 TAAAATGACTGTTTTGCCCCTATGTG
8628215 ATATATGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.42
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCCTATGTGG
Found at i:8628457 original size:23 final size:24
Alignment explanation
Indices: 8628431--8628475 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
8628421 TTATCCCCAC
*
8628431 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
8628454 ATGGAGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
8628476 GTAGGACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.22, C:0.02, G:0.51, T:0.24
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:8629537 original size:48 final size:49
Alignment explanation
Indices: 8629466--8629730 Score: 283
Period size: 50 Copynumber: 5.5 Consensus size: 49
8629456 AGATGCTGAC
* *
8629466 GCCATGTCCC-GAACATGGTCTTACACTGGCTCACA-CATCAAAGTCGAT
1 GCCATGTCCCAG-ACATGGTCTTACACTGGCTCACATCATCAATGCCGAT
* * * * * *
8629514 GCCATGTCCCAAACATGGTCTTACACTGACTCTCATATATCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CATCAATGCCGAT
* **
8629564 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATC-ATCAATGCCGAT
* * *
8629614 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC-TCAATGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATCATCAATGCCGAT
* * *
8629662 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT--GTGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACATCATCAAT-GCCGAT
*
8629710 G-CATATCCCAGACAT-GTCTTA
1 GCCATGTCCCAGACATGGTCTTA
8629731 TACTAGCACA
Statistics
Matches: 190, Mismatches: 21, Indels: 14
0.84 0.09 0.06
Matches are distributed among these distances:
46 6 0.03
47 14 0.07
48 80 0.42
49 1 0.01
50 89 0.47
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCACATCATCAATGCCGAT
Found at i:8629664 original size:98 final size:97
Alignment explanation
Indices: 8629466--8629737 Score: 324
Period size: 98 Copynumber: 2.8 Consensus size: 97
8629456 AGATGCTGAC
* ** * *
8629466 GCCATGTCCC-GAACATGGTCTTACACTGGCTCACA-CATCAAAGTCGATGCCATGTCCCAAACA
1 GCCATGTCCCAG-ACATGGTCTTACACTGGCTCTCATCATC-GTGCCGATGCCATGTCCCAGACA
*
8629529 TGGTCTTACACT-GACTCTCATATATCGAGGCCGAT
64 TGGTCTTACACTAG-CTCTCA-ATATCAAGGCCGAT
8629564 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGTGCCGATGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATC-ATC-GTGCCGATGCCATGTCCCAGACA
* * *
8629629 TGGTCTTACACTAGCTCTC-ATCTCAATGTCGAT
64 TGGTCTTACACTAGCTCTCAATATCAAGGCCGAT
* *
8629662 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG-CATATCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCATCGT-GCCGATGCCATGTCCCAGACAT
*
8629725 -GTCTTATACTAGC
65 GGTCTTACACTAGC
8629738 ACACATGTCA
Statistics
Matches: 156, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
94 12 0.08
95 15 0.10
96 7 0.04
97 2 0.01
98 78 0.50
99 2 0.01
100 39 0.25
101 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (97 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCATCGTGCCGATGCCATGTCCCAGACATG
GTCTTACACTAGCTCTCAATATCAAGGCCGAT
Found at i:8639994 original size:30 final size:30
Alignment explanation
Indices: 8639958--8640019 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
8639948 CATTTAATAC
*
8639958 AAACTTTGGCAAAATTACATTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
* *
8639988 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
8640018 AA
1 AA
8640020 GCTCGGGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:8641545 original size:48 final size:48
Alignment explanation
Indices: 8641474--8641740 Score: 306
Period size: 48 Copynumber: 5.6 Consensus size: 48
8641464 TACAGTACCA
*
8641474 ATGCCATGTCCCAGACATAGTCTTACACTGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * *
8641522 ATGCCATGTCCCAGACATGGTCTTACACTAGCACATACATCATCG-GG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * * * *
8641569 AATGCCATGTCCAAGACATGGTCTTACACCGGCACGTACATCATCACCG
1 -ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
** * * * * *
8641618 ATGAAATGTCCCAAACAAGGTCTTACACT-GCATATATATTATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * * *
8641665 ATGCCATGTCCCAAACTTGGTCTTACACAGGCACATATCTCAGAT-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATC--ATCGCCG
8641714 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
8641741 TGGAATCTCA
Statistics
Matches: 181, Mismatches: 33, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
47 37 0.20
48 113 0.62
49 29 0.16
50 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
Found at i:8647278 original size:19 final size:20
Alignment explanation
Indices: 8647254--8647291 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
8647244 GGTACCACCA
8647254 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
8647273 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
8647292 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:8653806 original size:48 final size:47
Alignment explanation
Indices: 8653735--8654001 Score: 271
Period size: 48 Copynumber: 5.6 Consensus size: 47
8653725 TAAAGTACCA
* * *
8653735 ATGCCATGTCCCTGACATGGTCTTACA-TGAATCCACATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG-A-GCACATATCATCGCCG
*
8653783 ATGCCATGTCCCAAACATGGTCTTACACTG-GCACATACATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAGCACAT--ATCATCGCCG
* * *
8653831 ATGCCATGTCCCAGACATGGTCTTACACCG-GCACGTACATCATCGCGG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAGCAC--ATATCATCGCCG
* * *
8653879 ATGCCATGTCCCAGACATGGTCTTAGACTG-GCATACATAT-TTTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAGC--ACATATCATCGCCG
8653926 ATGCCATGTCCCAGACATGGTCTTACA-T-AGGCACATATC-TCGGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-GCACATATCATC----GCCG
8653975 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
8654002 AGGAATCTCA
Statistics
Matches: 189, Mismatches: 16, Indels: 27
0.81 0.07 0.12
Matches are distributed among these distances:
45 7 0.04
46 6 0.03
47 32 0.17
48 108 0.57
49 33 0.17
50 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGAGCACATATCATCGCCG
Found at i:8653899 original size:96 final size:95
Alignment explanation
Indices: 8653735--8654001 Score: 312
Period size: 96 Copynumber: 2.8 Consensus size: 95
8653725 TAAAGTACCA
* * ** * * *
8653735 ATGCCATGTCCCTGACATGGTCTTACATGAATC-CACAT-ATCATCGCTGATGCCATGTCCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACATATCATCATCGCCGATGCCATGTCCCAGA
8653798 CATGGTCTTACACTGGCACATACATCA-TCGCCG
65 CATGGTCTTACACTGG--CATACAT-ATTCGCCG
* * *
8653831 ATGCCATGTCCCAGACATGGTCTTACACCGGCACGTA-CATCATCGCGGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATCATCATCGCCGATGCCATGTCCCAGAC
* *
8653895 ATGGTCTTAGACTGGCATACATATTTTGCCG
66 ATGGTCTTACACTGGCATACATA-TTCGCCG
*
8653926 ATGCCATGTCCCAGACATGGTCTTACATAGGCACATATC-TCGGAT-GCCGATGCCATGTCCCAG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATCATC--ATCGCCGATGCCATGTCCCAG
8653989 ACATGGTCTTACA
64 ACATGGTCTTACA
8654002 AGGAATCTCA
Statistics
Matches: 148, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
93 1 0.01
94 7 0.05
95 42 0.28
96 96 0.65
97 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATCATCATCGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGGCATACATATTCGCCG
Found at i:8655834 original size:51 final size:51
Alignment explanation
Indices: 8655758--8655860 Score: 161
Period size: 51 Copynumber: 2.0 Consensus size: 51
8655748 TCCAGGTACT
* * **
8655758 GACCTTGAGTGCAGATCTGTGAGTAGCTCAATGAGCGAGCATTACATGATA
1 GACCTTGAGTGCAAACCAATGAGTAGCTCAATGAGCGAGCATTACATGATA
*
8655809 GACCTTGAGTGCAAACCAATGAGTAGCTCAATGAGCGGGCATTACATGATA
1 GACCTTGAGTGCAAACCAATGAGTAGCTCAATGAGCGAGCATTACATGATA
8655860 G
1 G
8655861 GGTTATGAGG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (51 bp):
GACCTTGAGTGCAAACCAATGAGTAGCTCAATGAGCGAGCATTACATGATA
Found at i:8657203 original size:20 final size:21
Alignment explanation
Indices: 8657164--8657203 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8657154 GTTATAATGA
*
8657164 CCACACGGCCGTGCTGCCCTT
1 CCACACGGCCATGCTGCCCTT
*
8657185 CCACACGGGCATG-TGCCCT
1 CCACACGGCCATGCTGCCCT
8657204 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.45, G:0.25, T:0.17
Consensus pattern (21 bp):
CCACACGGCCATGCTGCCCTT
Found at i:8667333 original size:27 final size:27
Alignment explanation
Indices: 8667303--8667424 Score: 136
Period size: 27 Copynumber: 4.5 Consensus size: 27
8667293 AAATTGTACA
*
8667303 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
8667330 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
8667357 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
* * * *
8667384 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTT
*
8667411 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
8667425 GACTCAATAT
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTT
Found at i:8667363 original size:54 final size:54
Alignment explanation
Indices: 8667302--8667424 Score: 158
Period size: 54 Copynumber: 2.3 Consensus size: 54
8667292 TAAATTGTAC
* * **
8667302 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAAATGAATAT-AT
** *
8667357 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAAATGAATATAT
*
8667410 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
8667425 GACTCAATAT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
53 2 0.03
54 57 0.97
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAAATGAATATAT
Found at i:8678768 original size:19 final size:19
Alignment explanation
Indices: 8678746--8678786 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8678736 TTTATTGATA
8678746 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
8678764 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
8678783 TTTT
1 TTTT
8678787 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:8683673 original size:40 final size:40
Alignment explanation
Indices: 8683521--8683666 Score: 188
Period size: 40 Copynumber: 3.7 Consensus size: 40
8683511 TACCAGCTCG
* * ** * *
8683521 TAGCCTGCGGGTCTCT-GGCCCAGATAGTATTCTAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCCAGATAACATTCCAGCA-TA
* *
8683561 -AGCTTGCGGGTCTTTAAGCCCAAATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCAGATAACATTCCAGCATA
8683600 TAGCCTGCGGGTCTTTAAGCCCAGATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCAGATAACATTCCAGCATA
*
8683640 TAGCCTGCGGGTTTTTAAGCCCAGATA
1 TAGCCTGCGGGTCTTTAAGCCCAGATA
8683667 CAATTCCTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 14 0.15
40 79 0.85
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCAGATAACATTCCAGCATA
Found at i:8689579 original size:27 final size:27
Alignment explanation
Indices: 8689549--8689723 Score: 199
Period size: 27 Copynumber: 6.4 Consensus size: 27
8689539 TTGAGTCCGT
* * * *
8689549 ACACTCAGTGCTATATAATCAACTCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
* *
8689576 ACACTTAGTGCTACGTAATCAAATCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
8689603 ACACTTAGTGCTACATAGTCAAACTCGC
1 ACACTTAGTGCTACATAGTCAAA-TCGC
** * *
8689631 ACACTTAGTGCCGCATGGTCAATTCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
* **
8689658 ACACTTAGTGC-ATCATATTCATTTCGC
1 ACACTTAGTGCTA-CATAGTCAAATCGC
*
8689685 ACACTTAGTGCAACATAGTCAAATCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
8689712 ACACTTAGTGCT
1 ACACTTAGTGCT
8689724 GTACAATTTA
Statistics
Matches: 127, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
ACACTTAGTGCTACATAGTCAAATCGC
Found at i:8689686 original size:82 final size:81
Alignment explanation
Indices: 8689567--8689722 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
8689557 TGCTATATAA
* *
8689567 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
8689632 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
8689649 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
8689713 CACTTAGTGC
65 CACTTAGTGC
8689723 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:8690222 original size:12 final size:12
Alignment explanation
Indices: 8690205--8690231 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8690195 ATGGCATACT
8690205 TATGTATATATA
1 TATGTATATATA
8690217 TATGTATATATA
1 TATGTATATATA
8690229 TAT
1 TAT
8690232 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:8694632 original size:40 final size:40
Alignment explanation
Indices: 8694496--8694625 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
8694486 GCGAGTCTCT
* * * *
8694496 AGCCCGGATAGCATTCTAGCACGA-AGCCTGCGGGTCTTTA
1 AGCCCGGATAACATTCCAGCA-TATAGCCTGCAGGTCTTTA
* *
8694536 AGCCCGGATAACATTCCAGCGTATAGCCTGCGGGTCTTTA
1 AGCCCGGATAACATTCCAGCATATAGCCTGCAGGTCTTTA
* *
8694576 AGCCCAGATAACATTCCAGCATATAGCCTGTAGGTCTTTA
1 AGCCCGGATAACATTCCAGCATATAGCCTGCAGGTCTTTA
8694616 AGCCCGGATA
1 AGCCCGGATA
8694626 CAATTCCTCA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 79 0.99
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
AGCCCGGATAACATTCCAGCATATAGCCTGCAGGTCTTTA
Found at i:8696165 original size:19 final size:19
Alignment explanation
Indices: 8696141--8696184 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
8696131 TGAACACCCA
8696141 TTATTTTA-TAATCT-TTTT
1 TTATTTTACTAAT-TATTTT
8696159 CTTATTTTACTAATTATTTT
1 -TTATTTTACTAATTATTTT
8696179 TTATTT
1 TTATTT
8696185 CAAAATAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (19 bp):
TTATTTTACTAATTATTTT
Found at i:8697675 original size:27 final size:27
Alignment explanation
Indices: 8697373--8697663 Score: 288
Period size: 27 Copynumber: 10.8 Consensus size: 27
8697363 CTAAATTGAT
*
8697373 AAATGACTATTTTTCCCTTAT-ATTGTA
1 AAATGACTATTTTTCCCTTATGA-GGTA
* * *
8697400 ACATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTTCCCTTATGAGGTA
** * *
8697427 AAATGACCGTTTTGCCCTTCT-ATGGTA
1 AAATGACTATTTTTCCCTTATGA-GGTA
* * *
8697454 TACTGACTGTTTTGT--CTGTAT-ATGGTA
1 AAATGACTATTTT-TCCCT-TATGA-GGTA
*
8697481 AAATGACTATTTTGCCCTTATGAGGTA
1 AAATGACTATTTTTCCCTTATGAGGTA
*
8697508 AAATGATTATTTTTCCCTTATGAGGTA
1 AAATGACTATTTTTCCCTTATGAGGTA
* *
8697535 AAATGATTGTTTTTCCCTTATGAGGTA
1 AAATGACTATTTTTCCCTTATGAGGTA
* * *
8697562 AAATGATTGTTTTTCCTTTATGAGGTA
1 AAATGACTATTTTTCCCTTATGAGGTA
*
8697589 AAATGACTGA-TTTGCCCTTATGAGGTA
1 AAATGACT-ATTTTTCCCTTATGAGGTA
* * *
8697616 AAATGACTGTTTTGCCCTTATGAAGTA
1 AAATGACTATTTTTCCCTTATGAGGTA
8697643 AAATGACTATTTTTCCCTTAT
1 AAATGACTATTTTTCCCTTAT
8697664 ATGGTAAGAT
Statistics
Matches: 225, Mismatches: 30, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.01
27 220 0.98
28 3 0.01
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.42
Consensus pattern (27 bp):
AAATGACTATTTTTCCCTTATGAGGTA
Found at i:8699696 original size:27 final size:27
Alignment explanation
Indices: 8699661--8699859 Score: 256
Period size: 27 Copynumber: 7.3 Consensus size: 27
8699651 CCAAAGTAAT
* * *
8699661 AAATGATTGTTTTTCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
* * *
8699688 AAATGATTGTTTTGCCCTTATGTGGCA
1 AAATGACTGTTTTGCCCTTATGAGGTA
8699715 AAATGACTGTTTTGCCCTTATGAGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
* * *
8699742 AAATGACTATTTAGCCCTTATGAAGTGA
1 AAATGACTGTTTTGCCCTTATGAGGT-A
*
8699770 AAATGACTGATTTGCCCTTATGAGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
*
8699797 AAATGACTGTTTTGCCCTTATGAGGTG
1 AAATGACTGTTTTGCCCTTATGAGGTA
* *
8699824 AAATGACTATTTTGCCCTTAT-ATGGTG
1 AAATGACTGTTTTGCCCTTATGA-GGTA
8699851 AAATGACTG
1 AAATGACTG
8699860 ATATGCCCCT
Statistics
Matches: 154, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 130 0.84
28 23 0.15
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGAGGTA
Found at i:8699786 original size:82 final size:82
Alignment explanation
Indices: 8699687--8699874 Score: 272
Period size: 82 Copynumber: 2.3 Consensus size: 82
8699677 CTTATGTGGT
* *
8699687 AAAATGATTGTTTTGCCCTTATGTGGCAAAATGACTGTTTTGCCCTTATGAGGTAAAATGACTAT
1 AAAATGACTGATTTGCCCTTATGTGGCAAAATGACTGTTTTGCCCTTATGAGGTAAAATGACTAT
8699752 TTAGCCCTTATGA-AGTG
66 TTAGCCCTTAT-ATAGTG
* * *
8699769 AAAATGACTGATTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGAGGTGAAATGACTAT
1 AAAATGACTGATTTGCCCTTATGTGGCAAAATGACTGTTTTGCCCTTATGAGGTAAAATGACTAT
* *
8699834 TTTGCCCTTATATGGTG
66 TTAGCCCTTATATAGTG
* *
8699851 -AAATGACTGATATGCCCCTATGTG
1 AAAATGACTGATTTGCCCTTATGTG
8699875 ATGTACGTTT
Statistics
Matches: 95, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
81 22 0.23
82 73 0.77
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (82 bp):
AAAATGACTGATTTGCCCTTATGTGGCAAAATGACTGTTTTGCCCTTATGAGGTAAAATGACTAT
TTAGCCCTTATATAGTG
Found at i:8701655 original size:21 final size:22
Alignment explanation
Indices: 8701616--8701656 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8701606 TATGTTTTGG
*
8701616 TATGTCTTTGGTTTATGAATGT
1 TATGTCTTTGATTTATGAATGT
*
8701638 TATGT-TTTGATTTTTGAAT
1 TATGTCTTTGATTTATGAAT
8701657 TATGAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.20, C:0.02, G:0.20, T:0.59
Consensus pattern (22 bp):
TATGTCTTTGATTTATGAATGT
Found at i:8718487 original size:21 final size:22
Alignment explanation
Indices: 8718448--8718488 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8718438 TATGTTTTGG
*
8718448 TATGTCTTTGGTTTATGAATGT
1 TATGTCTTTGATTTATGAATGT
*
8718470 TATGT-TTTGATTTGTGAAT
1 TATGTCTTTGATTTATGAAT
8718489 TATGAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.20, C:0.02, G:0.22, T:0.56
Consensus pattern (22 bp):
TATGTCTTTGATTTATGAATGT
Found at i:8719982 original size:37 final size:37
Alignment explanation
Indices: 8719922--8719997 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
8719912 TATTACGAAA
* * *
8719922 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
8719959 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
8719996 TC
1 TC
8719998 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:8720196 original size:47 final size:47
Alignment explanation
Indices: 8720133--8720615 Score: 849
Period size: 47 Copynumber: 10.2 Consensus size: 47
8720123 CACATTTATG
* * * ** * * **
8720133 CACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8720180 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8720227 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8720274 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8720321 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8720368 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8720415 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8720462 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8720509 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
**
8720556 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACTTATATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC--GCATATA
8720605 CACTTTCACAT
1 CACTTTCACAT
8720616 ATGGGTTTAA
Statistics
Matches: 423, Mismatches: 11, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
47 407 0.96
49 16 0.04
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.30
Consensus pattern (47 bp):
CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
Found at i:8724439 original size:43 final size:44
Alignment explanation
Indices: 8724320--8724439 Score: 149
Period size: 43 Copynumber: 2.8 Consensus size: 44
8724310 TGATAGGAGA
* * *
8724320 TTACATGTAAGACTATGTCTAGGACATTGGCAT-TGTATTGTGT
1 TTACGTGTAAGACCATGTCTAGGACATTGGCATCTGTATTGTAT
*
8724363 TTACGTGTAAGACCATGTCTGGGACATTGGCATCAT-TATATG-AT
1 TTACGTGTAAGACCATGTCTAGGACATTGGCATC-TGTAT-TGTAT
*
8724407 TT-CGTGTAAGACCATGTCTAGGACACTGGCATC
1 TTACGTGTAAGACCATGTCTAGGACATTGGCATC
8724440 GATATGAGAT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
43 59 0.87
44 6 0.09
45 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (44 bp):
TTACGTGTAAGACCATGTCTAGGACATTGGCATCTGTATTGTAT
Found at i:8731056 original size:72 final size:72
Alignment explanation
Indices: 8730937--8731079 Score: 250
Period size: 72 Copynumber: 2.0 Consensus size: 72
8730927 TACTAAATAA
* * *
8730937 GGAATCTGAAAATATAAATCATGACTTTTAATTATCTTTGAACAATTTATGGTGAATTTCCAAAT
1 GGAATCTGAAAATATAAATCATGACTTCTAATTATCTTTGAAAAATTTATGGTGAATTTCCAAAG
8731002 TCAGAAT
66 TCAGAAT
*
8731009 GGAATCTGTAAATATAAATCATGACTTCTAATTATCTTTGAAAAATTTATGGTGAATTTCCAAAG
1 GGAATCTGAAAATATAAATCATGACTTCTAATTATCTTTGAAAAATTTATGGTGAATTTCCAAAG
8731074 TCAGAA
66 TCAGAA
8731080 CAGGGGATCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36
Consensus pattern (72 bp):
GGAATCTGAAAATATAAATCATGACTTCTAATTATCTTTGAAAAATTTATGGTGAATTTCCAAAG
TCAGAAT
Found at i:8732151 original size:91 final size:92
Alignment explanation
Indices: 8731895--8732170 Score: 294
Period size: 91 Copynumber: 3.0 Consensus size: 92
8731885 TAAGTGCCAC
8731895 ATATGTAGCCAAGCTACTATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTTGG
1 ATATGTAGCCAAGCTACTATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTTGG
8731960 GCGTTCGCATCCATAGGTGAACTCAGA
66 GCGTTCGCATCCATAGGTGAACTCAGA
* ** * * * * *** *** *
8731987 CTCAACTCA-ACGAG-TTCGGATGCCT-AGTTGCATTTCA-CGAACTCGGACTCAACTCAACGAG
1 AT-ATGT-AGCCAAGCTAC-TATG--TAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAG
* * * *
8732048 -TTCGGACATTCGCATCCATAAGTGAACT-TGA
61 CTT-GGGCGTTCGCATCCATAGGTGAACTCAGA
8732079 ATATGTAGCCAAGCTACTATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTTGG
1 ATATGTAGCCAAGCTACTATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTTGG
8732144 GCGTTCGCATCCATAGGTGAACTCAGA
66 GCGTTCGCATCCATAGGTGAACTCAGA
8732171 CTCAACTCAA
Statistics
Matches: 136, Mismatches: 36, Indels: 24
0.69 0.18 0.12
Matches are distributed among these distances:
89 1 0.01
90 6 0.04
91 54 0.40
92 14 0.10
93 54 0.40
94 6 0.04
95 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
ATATGTAGCCAAGCTACTATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTTGG
GCGTTCGCATCCATAGGTGAACTCAGA
Found at i:8732204 original size:184 final size:184
Alignment explanation
Indices: 8731895--8732263 Score: 738
Period size: 184 Copynumber: 2.0 Consensus size: 184
8731885 TAAGTGCCAC
8731895 ATATGTAGCCAAGCTACTATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTTGG
1 ATATGTAGCCAAGCTACTATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTTGG
8731960 GCGTTCGCATCCATAGGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTGCATTTCAC
66 GCGTTCGCATCCATAGGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTGCATTTCAC
8732025 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGA
131 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGA
8732079 ATATGTAGCCAAGCTACTATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTTGG
1 ATATGTAGCCAAGCTACTATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTTGG
8732144 GCGTTCGCATCCATAGGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTGCATTTCAC
66 GCGTTCGCATCCATAGGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTGCATTTCAC
8732209 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGA
131 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGA
8732263 A
1 A
8732264 CTCAACTCAA
Statistics
Matches: 185, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
184 185 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (184 bp):
ATATGTAGCCAAGCTACTATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTTGG
GCGTTCGCATCCATAGGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTGCATTTCAC
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGA
Found at i:8732229 original size:93 final size:92
Alignment explanation
Indices: 8731931--8732286 Score: 375
Period size: 93 Copynumber: 3.8 Consensus size: 92
8731921 CGCCCATAAG
* * *
8731931 CGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAGGTGAACTCAGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACT-AGACTCAACTC
8731995 AACGAGTTCGGATGCCTAGTTGCATTTCA
64 AACGAGTTCGGATGCCTAGTTGCATTTCA
* * **
8732024 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGAAT-ATGT-AG
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTAGACTCAACTCA-
* * * * *** *** *
8732087 CCAAGCTAC-TATG--TAACCCGCCCATAA
65 ACGAG-TTCGGATGCCT-AGTTGCATTTCA
* * *
8732114 GCGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAGGTGAACTCAGACTCAACT
1 -CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACT-AGACTCAACT
8732178 CAACGAGTTCGGATGCCTAGTTGCATTTCA
63 CAACGAGTTCGGATGCCTAGTTGCATTTCA
*
8732208 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTAG-ACTCAACTCA
*
8732273 ACGAGCTCGGATGC
65 ACGAGTTCGGATGC
8732287 TCAACCATCC
Statistics
Matches: 208, Mismatches: 41, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
89 1 0.00
90 6 0.03
91 54 0.26
92 17 0.08
93 123 0.59
94 6 0.03
95 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTGCATTTCA
Found at i:8732276 original size:46 final size:46
Alignment explanation
Indices: 8731924--8732283 Score: 178
Period size: 46 Copynumber: 7.8 Consensus size: 46
8731914 TGTAACCCGC
* * *
8731924 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGAACTCAACTCAACGAG-TTCGGACATTCGCAT
* *
8731970 CCATAGGTGAACTC-AGACTCAACTCAACGAGTTCGGATGCCTAGTT-GCAT
1 CCATAAGCGAACTCGA-ACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
8732020 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
* * * * * * * * **
8732063 CCATAAGTGAACTTGAATATGTAGC-CAAGCTACTAT-GTA-ACCCGC--
1 CCATAAGCGAACTCGAA-CT-CAACTCAA-CGAGT-TCGGACATTCGCAT
* * *
8732108 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGAACTCAACTCAACGAG-TTCGGACATTCGCAT
* *
8732154 CCATAGGTGAACTC-AGACTCAACTCAACGAGTTCGGATGCCTAGTT-GCAT
1 CCATAAGCGAACTCGA-ACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
8732204 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
8732247 CCATAAGTGAACTTGAACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGAACTCAACTCAACGAGTTCGGA
8732284 TGCTCAACCA
Statistics
Matches: 229, Mismatches: 52, Indels: 66
0.66 0.15 0.19
Matches are distributed among these distances:
42 4 0.02
43 16 0.07
44 10 0.04
45 22 0.10
46 91 0.40
47 62 0.27
48 9 0.04
49 3 0.01
50 8 0.03
51 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:8736104 original size:40 final size:39
Alignment explanation
Indices: 8736014--8736217 Score: 216
Period size: 40 Copynumber: 5.1 Consensus size: 39
8736004 TCGAATGATG
* *
8736014 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTATA
*
8736054 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATA
* * * *
8736093 TTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
*
8736133 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATA
* * **
8736173 ACCGGGCTATGTTCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTA-CTATA
8736213 TCCGG
1 TCCGG
8736218 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
39 36 0.26
40 94 0.68
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:8736180 original size:79 final size:81
Alignment explanation
Indices: 8736015--8736196 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
8736005 CGAATGATGT
* *
8736015 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
8736079 GTGCGAGTTACTAATT
66 GTGCGAGTTACTAATA
* * * **
8736095 CTGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
8736157 TGTGCGAGTTACT-ATAA
65 TGTGCGAGTTACTAAT-A
* *
8736174 CCGGGCTATGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
8736197 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.67
80 26 0.30
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATA
Found at i:8736220 original size:79 final size:77
Alignment explanation
Indices: 8736048--8736231 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 77
8736038 GTGCTAAGTG
* * *
8736048 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
**
8736113 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* * *
8736127 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTTCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAA
*
8736191 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
8736206 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
8736232 TACGTGATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:8737999 original size:30 final size:30
Alignment explanation
Indices: 8737955--8738043 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
8737945 CAAAGATAAC
*
8737955 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
8737984 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
8738014 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
8738044 TGACACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:8738003 original size:15 final size:14
Alignment explanation
Indices: 8737955--8738037 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
8737945 CAAAGATAAC
*
8737955 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
8737969 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
8737984 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
8737999 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
8738014 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
8738029 AAGAAACCC
1 AAGAAACCC
8738038 AAGATATGAC
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:8738043 original size:15 final size:15
Alignment explanation
Indices: 8737966--8738043 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
8737956 AGAAAACCGA
8737966 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
8737981 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
8737995 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
8738010 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
8738026 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
8738041 ATA
1 ATA
8738044 TGACACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:8741780 original size:30 final size:30
Alignment explanation
Indices: 8741746--8741842 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
8741736 TAAACTAAAA
*
8741746 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
8741776 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
8741806 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
8741835 ATGAGCTA
1 -TGAGCTA
8741843 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:8742949 original size:93 final size:93
Alignment explanation
Indices: 8742790--8742961 Score: 238
Period size: 93 Copynumber: 1.8 Consensus size: 93
8742780 CGCCCATAAG
* * * * *
8742790 CGAACTCGGACTCAACTCAACAAGCTCCGGCGTTCGTATCCATAGGTGAACTCGGATTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
8742855 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
* * * *
8742883 CGAACTCGGATTCAACTCAACGAG-TTCGAACATTCGCATCCATAAGTGAACTTGGACTCAACTC
1 CGAACTCGGACTCAACTCAACAAGCTCCG-ACATTCGCATCCATAAGTGAACTCGGACTCAACTC
8742947 AACGAGCTCGGATGC
65 AACGAGCTCGGATGC
8742962 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
92 3 0.04
93 65 0.96
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:8749489 original size:29 final size:29
Alignment explanation
Indices: 8749434--8749566 Score: 164
Period size: 29 Copynumber: 4.7 Consensus size: 29
8749424 GTGAGCATGA
* * *
8749434 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
8749462 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
8749491 ATATACAGGTGATTTGGGCATAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
8749520 ATATACAA-GTGATTTGGGCCTAATGGGCC
1 ATATA-AATGTGATTTGGGCCTAATGGGCC
* *
8749549 ATATGAATATGA-TTGGGC
1 ATATAAATGTGATTTGGGC
8749567 TCAGTGGTCC
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
28 19 0.21
29 72 0.78
30 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:8751755 original size:28 final size:28
Alignment explanation
Indices: 8751690--8751840 Score: 232
Period size: 28 Copynumber: 5.4 Consensus size: 28
8751680 GAGATTGGTG
* * *
8751690 CTAAGTGTGCGAGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
8751719 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
8751747 GTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
8751775 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
8751803 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
8751830 TTGAGTGTGCG
1 CTAAGTGTGCG
8751841 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 23 0.20
28 76 0.66
29 16 0.14
ACGTcount: A:0.28, C:0.11, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:8758982 original size:43 final size:42
Alignment explanation
Indices: 8758924--8759044 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 42
8758914 TCGAGATGTG
* * *
8758924 ATTACATGTATGACCATGTCTAGGACATTGGCATTG-TATTATA
1 ATTACGTGTAAGACCATGTCT-GGACATTGGCATCGTTA-TATA
*
8758967 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATATG
1 ATTACGTGTAAGACCATGTCT-GGACATTGGCATCGTTATATA
*
8759010 ATTTCGTGTAAGACCATGTCTGGAACATTGGCATC
1 ATTACGTGTAAGACCATGTCTGG-ACATTGGCATC
8759045 AATATGAGAT
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
42 2 0.03
43 66 0.94
44 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (42 bp):
ATTACGTGTAAGACCATGTCTGGACATTGGCATCGTTATATA
Found at i:8770914 original size:40 final size:41
Alignment explanation
Indices: 8770779--8770964 Score: 261
Period size: 41 Copynumber: 4.6 Consensus size: 41
8770769 TACTCGAATG
*
8770779 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
*
8770820 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
8770861 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
8770901 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
8770941 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
8770965 CTTGTGCGAG
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 62 0.47
41 69 0.52
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:8770921 original size:81 final size:82
Alignment explanation
Indices: 8770781--8770934 Score: 249
Period size: 81 Copynumber: 1.9 Consensus size: 82
8770771 CTCGAATGAT
* * *
8770781 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
*
8770846 TTGTGCTAAGCGACTAC
66 TTATGCTAAGCGACTAC
8770863 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
8770926 TTTATGCTA
65 TTTATGCTA
8770935 GTGACCATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
81 39 0.58
82 27 0.40
83 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAAGCGACTAC
Found at i:8778219 original size:46 final size:48
Alignment explanation
Indices: 8778094--8778220 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 48
8778084 TGTAACCCGC
8778094 CCATAAGCGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAATGAGTTCGGA--CCTAGTTACAT
* * *
8778144 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAATGAGTTCGGACCTAGTT-ACAT
*
8778187 CCATAAGTGAACTCGGACTCAACTCAATGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAATGAGTTC
8778221 AGATGCTCAA
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 25 0.37
47 29 0.43
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (48 bp):
CCATAAGCGAACTCGGACTCAACTCAATGAGTTCGGACCTAGTTACAT
Found at i:8778242 original size:46 final size:46
Alignment explanation
Indices: 8778097--8778242 Score: 122
Period size: 46 Copynumber: 3.2 Consensus size: 46
8778087 AACCCGCCCA
*
8778097 TAAGCGAACTCGGACTCAACTCAATGAGTTCGGATGC-CTAGTTACAT-C
1 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCTC-A--T-CATCC
* * * *** *
8778145 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCTCATCATCC
*
8778189 ATAAGTGAACTCGGACTCAACTCAATGAGTTCAGATGCTCAATCATCC
1 -TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCTC-ATCATCC
8778237 T-AGTGA
1 TAAGTGA
8778243 CATGTCACTT
Statistics
Matches: 78, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 2 0.03
46 34 0.44
47 30 0.38
48 8 0.10
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCTCATCATCC
Found at i:8782587 original size:25 final size:25
Alignment explanation
Indices: 8782535--8782587 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
8782525 CATGTACATA
* * *
8782535 TATGCTCATAGGAGCTGTGAATCGG
1 TATGCCCATACGAGCTGTGAATCAG
8782560 TATGCCCATACGAGCTGT-AGATCAG
1 TATGCCCATACGAGCTGTGA-ATCAG
8782585 TAT
1 TAT
8782588 ACTCCCACGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (25 bp):
TATGCCCATACGAGCTGTGAATCAG
Found at i:8782611 original size:25 final size:25
Alignment explanation
Indices: 8782569--8782652 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 25
8782559 GTATGCCCAT
* * *
8782569 ACGAGCTGTAGATCAGTATACTCCC
1 ACGAGCTATAAATCAGTATACTCTC
*
8782594 ACGAGCTATAAATTAGTATGA-TCTC
1 ACGAGCTATAAATCAGTAT-ACTCTC
* * *
8782619 ATGAGCTATAAATCGGTATGCTCTC
1 ACGAGCTATAAATCAGTATACTCTC
8782644 ACGAGCTAT
1 ACGAGCTAT
8782653 GGAGTATCCG
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
25 47 0.98
26 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
ACGAGCTATAAATCAGTATACTCTC
Found at i:8785437 original size:28 final size:28
Alignment explanation
Indices: 8785396--8785465 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
8785386 ATAGTAAGTC
*
8785396 CGCACACTTAGTGCGTA-ATAATCAAACT
1 CGCACACTTAGTGC-TATACAATCAAACT
* *
8785424 TGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
8785452 CGCACACTTAGTGC
1 CGCACACTTAGTGC
8785466 CAATCTCATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 2 0.05
28 35 0.95
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:8793130 original size:40 final size:40
Alignment explanation
Indices: 8793063--8793239 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
8793053 ACCCAAGTAT
*
8793063 CTTCGGGAT-TTAG-CCGGATATAACAACTAGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTAGCACAAATGC
*
8793102 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
8793142 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTAGCACAAATGC
* * * *
8793182 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
8793222 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
8793240 TTATCATCCG
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 103 0.87
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:8793196 original size:80 final size:79
Alignment explanation
Indices: 8793063--8793239 Score: 259
Period size: 80 Copynumber: 2.2 Consensus size: 79
8793053 ACCCAAGTAT
* *
8793063 CTTCGGGAT-TTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGG-TCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGC
8793127 AACTCGCACAAATGC
65 AACTCGCACAAATGC
*
8793142 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
1 CTTCGGGTCTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAG
*
8793206 CAACTCGCACGAATGC
64 CAACTCGCACAAATGC
*
8793222 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAG-CCGG
8793240 TTATCATCCG
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
78 1 0.01
79 11 0.12
80 76 0.85
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (79 bp):
CTTCGGGTCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:8796185 original size:40 final size:40
Alignment explanation
Indices: 8796130--8796307 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
8796120 TGGATGATAA
* * *
8796130 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
8796170 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
8796210 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
8796250 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
8796290 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
8796308 TACTTGGCTT
Statistics
Matches: 126, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.13
40 110 0.87
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:8804030 original size:40 final size:40
Alignment explanation
Indices: 8803962--8804858 Score: 1640
Period size: 40 Copynumber: 22.4 Consensus size: 40
8803952 ACCCAAGTAT
*
8803962 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
8804001 CTTCGGGTCTTAGCCTGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
8804041 CTTCGGGTCTTAGCCCGGATATAATC-ACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
8804081 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804121 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804161 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804201 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804241 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804281 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804321 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804361 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804401 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804441 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804481 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804521 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804561 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804601 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804641 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804681 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
8804721 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
8804761 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
8804801 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
8804841 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
8804859 TTATCATCCA
Statistics
Matches: 834, Mismatches: 18, Indels: 11
0.97 0.02 0.01
Matches are distributed among these distances:
38 1 0.00
39 15 0.02
40 814 0.98
41 4 0.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:8806673 original size:40 final size:40
Alignment explanation
Indices: 8806605--8806781 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
8806595 ACCCAAGTAT
*
8806605 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
8806644 CTTCGGGTCTTAGCCTGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
8806684 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
8806724 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
8806764 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
8806782 TTATCATCCA
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:8820844 original size:24 final size:26
Alignment explanation
Indices: 8820817--8820874 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 26
8820807 AGTGTTATGT
*
8820817 GGAGAGAATCAAGGAGA-GGAT-TGG
1 GGAGAGAATCAAGGAGAGGGATAAGG
* **
8820841 GGAGAGATTTTAGGAGAGGGATAAGG
1 GGAGAGAATCAAGGAGAGGGATAAGG
8820867 GGAGAGAA
1 GGAGAGAA
8820875 AAAGAGATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 14 0.52
25 4 0.15
26 9 0.33
ACGTcount: A:0.38, C:0.02, G:0.47, T:0.14
Consensus pattern (26 bp):
GGAGAGAATCAAGGAGAGGGATAAGG
Found at i:8829585 original size:18 final size:17
Alignment explanation
Indices: 8829562--8829601 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
8829552 TGGTCCGTTC
8829562 TGGGCCGAATGGGTCTTG
1 TGGGCCGAATGGG-CTTG
**
8829580 TGGGCCTCATGGGCTTG
1 TGGGCCGAATGGGCTTG
8829597 TGGGC
1 TGGGC
8829602 TTCACACGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.07, C:0.20, G:0.45, T:0.28
Consensus pattern (17 bp):
TGGGCCGAATGGGCTTG
Found at i:8830069 original size:26 final size:26
Alignment explanation
Indices: 8830034--8830113 Score: 97
Period size: 26 Copynumber: 3.1 Consensus size: 26
8830024 ACATATATAC
* *
8830034 TGATATTGGCAGCTTTGCTGTGATAT
1 TGATACTGGCAGCTTTGATGTGATAT
* * * * *
8830060 TGCTACTGGCAGCTTTGTTGCGTTAC
1 TGATACTGGCAGCTTTGATGTGATAT
8830086 TGATACTGGCAGCTTTGATGTGATAT
1 TGATACTGGCAGCTTTGATGTGATAT
8830112 TG
1 TG
8830114 GTGTGTTGGC
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.17, C:0.15, G:0.28, T:0.40
Consensus pattern (26 bp):
TGATACTGGCAGCTTTGATGTGATAT
Found at i:8830653 original size:17 final size:17
Alignment explanation
Indices: 8830631--8830665 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8830621 AACAAACAGG
8830631 GTTTTATAAGT-AATAAC
1 GTTTTA-AAGTGAATAAC
8830648 GTTTTAAAGTGAATAAC
1 GTTTTAAAGTGAATAAC
8830665 G
1 G
8830666 AATAGTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.37
Consensus pattern (17 bp):
GTTTTAAAGTGAATAAC
Found at i:8832126 original size:27 final size:27
Alignment explanation
Indices: 8832108--8832196 Score: 142
Period size: 27 Copynumber: 3.3 Consensus size: 27
8832098 CTCAATTTGT
*
8832108 AAAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACCGTTTTACCCTCGATTTAC
* *
8832135 AGAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCGTTTTACCCTCGATTTAC
*
8832162 AAAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCGTTTTACCCTCGATTTAC
8832189 AAAATTAC
1 AAAATTAC
8832197 TAAAATACCC
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (27 bp):
AAAATTACCGTTTTACCCTCGATTTAC
Found at i:8832205 original size:27 final size:26
Alignment explanation
Indices: 8832148--8832402 Score: 188
Period size: 27 Copynumber: 9.4 Consensus size: 26
8832138 ATTATCGTTT
* ***
8832148 TACCCTCGATTTACAAAATTACCATTT
1 TACCC-CGATTTATAAAATTACCAAAA
* *
8832175 TACCCTCGATTTACAAAATTACTAAAA
1 TACCC-CGATTTATAAAATTACCAAAA
* * *
8832202 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCC-CGATTTATAAAATTACCAAAA
*
8832229 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCC-CGATTTA-TAAAATTACCAAAA
* *
8832256 TACCCCTGATTTGTAAAATTACTAAAA
1 TACCCC-GATTTATAAAATTACCAAAA
* *
8832283 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCCGA-TTTATAAAATTACCAAAA
* * * *
8832310 TACCCCTAGTTTGTAAAATAACTAAAA
1 TACCCCGA-TTTATAAAATTACCAAAA
* *
8832337 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCCGA-TTTATAAAATTACCAAAA
** * *
8832364 TACCCCTGGCTTGTAAAATTAACAAAA
1 TACCCC-GATTTATAAAATTACCAAAA
8832391 TACCCCTGATTT
1 TACCCC-GATTT
8832403 GCGAAATTAT
Statistics
Matches: 197, Mismatches: 26, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.02
27 192 0.97
28 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (26 bp):
TACCCCGATTTATAAAATTACCAAAA
Found at i:8832206 original size:54 final size:54
Alignment explanation
Indices: 8832076--8832277 Score: 151
Period size: 54 Copynumber: 3.7 Consensus size: 54
8832066 AATACTTTAG
* * * * ** *
8832076 TTTACCAAATTACTGAAATGCCCTCAATTTGTAAAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
* * **
8832130 TTTATAGAATTATCGT--TTTACCCTCGATTTACAAAATTACCATTTTACCCTCGA
1 TTTACAAAATTA-C-TAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
* * ***
8832184 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
* * * **
8832238 -TCAGTAAAATTACCAAAATACCC-CTGATTTGTAAAATTAC
1 TTTA-CAAAATTACTAAAATACCCTC-GATTTACAAAATTAC
8832278 TAAAATACCC
Statistics
Matches: 116, Mismatches: 26, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
52 1 0.01
53 3 0.03
54 110 0.95
55 1 0.01
56 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (54 bp):
TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
Found at i:8832283 original size:54 final size:54
Alignment explanation
Indices: 8832189--8832436 Score: 263
Period size: 54 Copynumber: 4.6 Consensus size: 54
8832179 CTCGATTTAC
* * * ** * * **
8832189 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCCTAG-TTTGT
8832243 AAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCCTAGTTTGT
*
8832297 AAAATTACCAAAATACCCCT-AGTTTGTAAAATAACTAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGTAAAATTACTAAAATACCCCTAGTTTGT
** *
8832351 AAAATTACCAAAATACCCCTGGCTTGTAAAATTAAC-AAAATACCCCT-GATTTGC
1 AAAATTACCAAAATACCCCTGATTTGTAAAATT-ACTAAAATACCCCTAG-TTTGT
* * * *
8832405 GAAATTATCGAAATA-CTCTCGATTTGTAAAAT
1 AAAATTACCAAAATACCCCT-GATTTGTAAAAT
8832437 ATCGAAATAC
Statistics
Matches: 168, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
53 5 0.03
54 156 0.93
55 7 0.04
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCCTAGTTTGT
Found at i:8832396 original size:81 final size:82
Alignment explanation
Indices: 8832189--8832397 Score: 280
Period size: 81 Copynumber: 2.6 Consensus size: 82
8832179 CTCGATTTAC
* ** * *
8832189 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATAACCA
8832253 AAATACCCCTGATTTGT
66 AAATACCCCTGATTTGT
* ** *
8832270 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAG-TTTGTAAAATAACTA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATAACCA
8832334 AAATACCCCT-AGTTTGT
66 AAATACCCCTGA-TTTGT
* * *
8832351 AAAATTACCAAAATACCCCTGGCTTGTAAAATTAACAAAATACCCCT
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT
8832398 GATTTGCGAA
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
80 1 0.01
81 107 0.95
82 5 0.04
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (82 bp):
AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATAACCA
AAATACCCCTGATTTGT
Found at i:8832411 original size:27 final size:27
Alignment explanation
Indices: 8832189--8832397 Score: 221
Period size: 27 Copynumber: 7.7 Consensus size: 27
8832179 CTCGATTTAC
* * **
8832189 AAAATT-ACTAAAATACCCTTGGTTTAC
1 AAAATTAAC-AAAATACCCCTAGTTTGT
* * **
8832216 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTAACAAAATACCCCTAG-TTTGT
*
8832243 AAAATTACCAAAATACCCCT-GATTTGT
1 AAAATTAACAAAATACCCCTAG-TTTGT
8832270 AAAATT-ACTAAAATACCCCTAGTTTGT
1 AAAATTAAC-AAAATACCCCTAGTTTGT
*
8832297 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTAACAAAATACCCCTAGTTTGT
8832324 AAAA-TAACTAAAATACCCCTAGTTTGT
1 AAAATTAAC-AAAATACCCCTAGTTTGT
* * *
8832351 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTAACAAAATACCCCTAGTTTGT
8832378 AAAATTAACAAAATACCCCT
1 AAAATTAACAAAATACCCCT
8832398 GATTTGCGAA
Statistics
Matches: 158, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
26 8 0.05
27 140 0.89
28 10 0.06
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (27 bp):
AAAATTAACAAAATACCCCTAGTTTGT
Found at i:8832418 original size:27 final size:27
Alignment explanation
Indices: 8832189--8832448 Score: 214
Period size: 27 Copynumber: 9.7 Consensus size: 27
8832179 CTCGATTTAC
* * **
8832189 AAAATTA-CTAAAATACCCTTGGTTTAC
1 AAAATTATC-AAAATACCCCTGATTTGT
* **
8832216 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTATCAAAATACCCCT-GATTTGT
*
8832243 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTATCAAAATACCCCTGATTTGT
8832270 AAAATTA-CTAAAATACCCCT-AGTTTGT
1 AAAATTATC-AAAATACCCCTGA-TTTGT
*
8832297 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTATCAAAATACCCCTGA-TTTGT
*
8832324 AAAA-TAACTAAAATACCCCT-AGTTTGT
1 AAAATTATC-AAAATACCCCTGA-TTTGT
* **
8832351 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTATCAAAATACCCCTGATTTGT
* *
8832378 AAAATTAACAAAATACCCCTGATTTGC
1 AAAATTATCAAAATACCCCTGATTTGT
* * *
8832405 GAAATTATCGAAATA-CTCTCGATTTGT
1 AAAATTATCAAAATACCCCT-GATTTGT
*
8832432 AAAA-TATCGAAATACCC
1 AAAATTATCAAAATACCC
8832449 TTGTAGGGTA
Statistics
Matches: 199, Mismatches: 23, Indels: 22
0.82 0.09 0.09
Matches are distributed among these distances:
26 21 0.11
27 169 0.85
28 9 0.05
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTATCAAAATACCCCTGATTTGT
Found at i:8832419 original size:81 final size:80
Alignment explanation
Indices: 8832189--8832436 Score: 263
Period size: 81 Copynumber: 3.1 Consensus size: 80
8832179 CTCGATTTAC
* ** ** *
8832189 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-GATTTG-AAAATTAACA
8832253 AAATACCCCTGATTTGT
64 AAATACCCCTGATTTGT
*
8832270 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAA-TAACT
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGA-TTTG-AAAATTAAC-
8832333 AAAATACCCCT-AGTTTGT
63 AAAATACCCCTGA-TTTGT
* * * * * *
8832351 AAAATTACCAAAATACCCCTGGCTTGTAAAATTAACAAAATACCCCTGATTTGCGAAATTATCGA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTG-AAAATTAACAA
*
8832416 AATA-CTCTCGATTTGT
65 AATACCCCT-GATTTGT
8832432 AAAAT
1 AAAAT
8832437 ATCGAAATAC
Statistics
Matches: 143, Mismatches: 16, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
80 8 0.06
81 126 0.88
82 9 0.06
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGAAAATTAACAAA
ATACCCCTGATTTGT
Found at i:8832480 original size:27 final size:27
Alignment explanation
Indices: 8832439--8832572 Score: 196
Period size: 27 Copynumber: 5.0 Consensus size: 27
8832429 TGTAAAATAT
*
8832439 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
8832466 TGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
8832493 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
8832520 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
8832547 CAAAATACCCCTGTAGGGTAGAATTA
1 CGAAATACCCCTGTAGGGTAGAATTA
8832573 TCAAGATACC
Statistics
Matches: 95, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:8832599 original size:81 final size:81
Alignment explanation
Indices: 8832430--8832599 Score: 245
Period size: 81 Copynumber: 2.1 Consensus size: 81
8832420 CTCTCGATTT
* * ** *
8832430 GTAAAA-TATCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATT
1 GTAAAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATC
8832494 AAAATACCCCTGTAGG
66 AAAATACCCCTGTAGG
*
8832510 GTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATC
1 GTAAAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATC
* *
8832575 AAGATACCCTTGT-GG
66 AAAATACCCCTGTAGG
8832590 AGTAAAATTA
1 -GTAAAATTA
8832600 GCATTTTGCC
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
80 7 0.09
81 72 0.91
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.26
Consensus pattern (81 bp):
GTAAAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATC
AAAATACCCCTGTAGG
Found at i:8832612 original size:54 final size:54
Alignment explanation
Indices: 8832441--8832587 Score: 215
Period size: 54 Copynumber: 2.7 Consensus size: 54
8832431 TAAAATATCG
* * * * **
8832441 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATTA
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCA
8832495 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCA
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCA
*
8832549 AAATACCCCTGTAGGGTAGAATTATC-AAGATACCCTTGT
1 AAATACCCCTGTAGGGTAGAATTACCGAA-ATACCCTTGT
8832588 GGAGTAAAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
53 2 0.02
54 83 0.98
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCA
Found at i:8836242 original size:40 final size:40
Alignment explanation
Indices: 8836183--8836414 Score: 340
Period size: 40 Copynumber: 5.8 Consensus size: 40
8836173 CATTTGAATG
* * * *
8836183 ATATCCGCGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
8836223 TTATCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
8836263 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
8836303 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
8836343 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
8836383 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
8836415 TTGTGGTTAT
Statistics
Matches: 178, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 175 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:8843448 original size:47 final size:48
Alignment explanation
Indices: 8843366--8843486 Score: 160
Period size: 47 Copynumber: 2.6 Consensus size: 48
8843356 GTAAAGCGGC
*
8843366 GTAAGA-CATGTCTGGGACAT-GCATCAACTACGAGATGAT-AGTCACT
1 GTAAGACCATGTCTGGGACATGGCATCAACTACGAGAT-ATGAGCCACT
* ** *
8843412 GTAAGACCATGTCTGGCACATGGCATTGACT-TGAGATATGAGCCACT
1 GTAAGACCATGTCTGGGACATGGCATCAACTACGAGATATGAGCCACT
8843459 GTAAGACCATGTCTGGGACATGGCATCA
1 GTAAGACCATGTCTGGGACATGGCATCA
8843487 GTACCTTACC
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
46 8 0.12
47 49 0.77
48 7 0.11
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGGCATCAACTACGAGATATGAGCCACT
Found at i:8847548 original size:13 final size:13
Alignment explanation
Indices: 8847530--8847556 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8847520 TGAGCTTTAA
8847530 TTTAGTATCTCAT
1 TTTAGTATCTCAT
8847543 TTTAGTATCTCAT
1 TTTAGTATCTCAT
8847556 T
1 T
8847557 CAGCCTCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (13 bp):
TTTAGTATCTCAT
Found at i:8855134 original size:166 final size:166
Alignment explanation
Indices: 8854853--8855180 Score: 593
Period size: 166 Copynumber: 2.0 Consensus size: 166
8854843 CATTAGGCCG
* *
8854853 AAATTTAAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTCCAAGCTCCATAGTAATTGATTT
1 AAATTTAAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTC
* *
8854918 CAAGCCCCGTTTTTAATGTTCTTTACGTTTTTTGAATCCCGGAAGCTCGATTAAGCTTATGCTAG
66 CAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCCCAGAAGCTCGATTAAGCTTATGCTAG
8854983 CAATAATTCAACCTAGGGTTTATATTTGGAAATCTT
131 CAATAATTCAACCTAGGGTTTATATTTGGAAATCTT
* * *
8855019 AAATTTCAAGGGTTCTCCATAGTTAGGGTTTGTTTCAAGCTTCCAAGCTCTATAGTAAGTGATTC
1 AAATTTAAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTC
8855084 CAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCCCAGAAGCTCGATTAAGCTTATGCTAG
66 CAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCCCAGAAGCTCGATTAAGCTTATGCTAG
8855149 CAATAATTCAACCTAGGGTTTATATTTGGAAA
131 CAATAATTCAACCTAGGGTTTATATTTGGAAA
8855181 AATACCCATA
Statistics
Matches: 155, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
166 155 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (166 bp):
AAATTTAAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTC
CAAGCCCCGTTTTTAATGTTCTTTACGTTTTTGGAATCCCAGAAGCTCGATTAAGCTTATGCTAG
CAATAATTCAACCTAGGGTTTATATTTGGAAATCTT
Found at i:8855875 original size:58 final size:58
Alignment explanation
Indices: 8855785--8855899 Score: 194
Period size: 58 Copynumber: 2.0 Consensus size: 58
8855775 ATATTGCTGT
** *
8855785 AGCAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATGGATCTAAATGATGC
1 AGCAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATAAAACTAAATGATGC
*
8855843 AGCAATGACATGAATTTGAAAAATTACTAAAAATAGTATAAATAAAACTAAATGATG
1 AGCAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATAAAACTAAATGATG
8855900 AGTAAGTTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.51, C:0.09, G:0.14, T:0.26
Consensus pattern (58 bp):
AGCAATGACATGAATTTGAAAAATCACTAAAAATAGTATAAATAAAACTAAATGATGC
Found at i:8869886 original size:46 final size:46
Alignment explanation
Indices: 8869830--8869999 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
8869820 TGGTTGAGCA
8869830 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
8869876 TCCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
** *
8869921 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
8869969 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
8870000 TTAGGGGCGG
Statistics
Matches: 104, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 1 0.01
46 56 0.54
47 28 0.27
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:8869986 original size:93 final size:93
Alignment explanation
Indices: 8869827--8869997 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
8869817 GGATGGTTGA
* *
8869827 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
8869892 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
** *
8869920 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
8869985 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
8869998 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:8875773 original size:95 final size:95
Alignment explanation
Indices: 8875663--8875853 Score: 373
Period size: 95 Copynumber: 2.0 Consensus size: 95
8875653 GTGTATTTTG
8875663 ATGTTTTATGATAGAATATGGGGTTTTAAATTATGTTAGACAACTTGTACTACTCGATTTTAAGC
1 ATGTTTTATGATAGAATATGGGGTTTTAAATTATGTTAGACAACTTGTACTACTCGATTTTAAGC
*
8875728 AAAAACGAGTAAAAGGGCTTAATTGGTAAA
66 AAAAACGAGTAAAAGGGCTTAATCGGTAAA
8875758 ATGTTTTATGATAGAATATGGGGTTTTAAATTATGTTAGACAACTTGTACTACTCGATTTTAAGC
1 ATGTTTTATGATAGAATATGGGGTTTTAAATTATGTTAGACAACTTGTACTACTCGATTTTAAGC
8875823 AAAAACGAGTAAAAGGGCTTAATCGGTAAA
66 AAAAACGAGTAAAAGGGCTTAATCGGTAAA
8875853 A
1 A
8875854 ATACATTATA
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (95 bp):
ATGTTTTATGATAGAATATGGGGTTTTAAATTATGTTAGACAACTTGTACTACTCGATTTTAAGC
AAAAACGAGTAAAAGGGCTTAATCGGTAAA
Found at i:8876029 original size:105 final size:105
Alignment explanation
Indices: 8875847--8876055 Score: 391
Period size: 105 Copynumber: 2.0 Consensus size: 105
8875837 GGGCTTAATC
*
8875847 GGTAAAAATACATTATAGTCACAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGA
1 GGTAAAAATACATAATAGTCACAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGA
8875912 AAAGTGATCAGCATGTTGTAAAACATAAGAATAAGGAATT
66 AAAGTGATCAGCATGTTGTAAAACATAAGAATAAGGAATT
*
8875952 GGTAAAAATACCTAATAGTCACAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGA
1 GGTAAAAATACATAATAGTCACAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGA
*
8876017 AAAGTGATCAGCATGTTGTAACACATAAGAATAAGGAAT
66 AAAGTGATCAGCATGTTGTAAAACATAAGAATAAGGAAT
8876056 AAAGTTTAAT
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 101 1.00
ACGTcount: A:0.43, C:0.10, G:0.22, T:0.26
Consensus pattern (105 bp):
GGTAAAAATACATAATAGTCACAAGTACATGTTAGAGTGAGAATTTGATGTTGCCATAGAAGAGA
AAAGTGATCAGCATGTTGTAAAACATAAGAATAAGGAATT
Found at i:8877452 original size:29 final size:29
Alignment explanation
Indices: 8877395--8877455 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
8877385 GAATTTGGTG
*
8877395 ATGGATTACATATCAAATTGAATATTATT
1 ATGGATTACATATCAAATTGAATAGTATT
8877424 ATGGATTACATATCAAATTGAATAGTATT
1 ATGGATTACATATCAAATTGAATAGTATT
8877453 ATG
1 ATG
8877456 TCTAGTTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (29 bp):
ATGGATTACATATCAAATTGAATAGTATT
Found at i:8884157 original size:46 final size:46
Alignment explanation
Indices: 8884107--8884282 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
8884097 TGGTTGAGCA
*
8884107 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
8884153 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
8884198 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
8884246 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8884283 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:8884263 original size:93 final size:93
Alignment explanation
Indices: 8884104--8884275 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
8884094 GGATGGTTGA
* * *
8884104 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8884169 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
8884197 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8884262 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
8884276 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:8893724 original size:28 final size:29
Alignment explanation
Indices: 8893682--8893796 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
8893672 TACCTGTATT
* *
8893682 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
8893710 TGGCCCATTAGGCCCAAACCAC-TTGTATA
1 TGGCCCATTAGGCCCAAATCACATT-CATA
*
8893739 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
8893768 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
8893796 T
1 T
8893797 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 28 0.37
29 46 0.61
30 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:8900631 original size:47 final size:47
Alignment explanation
Indices: 8900580--8900688 Score: 114
Period size: 47 Copynumber: 2.3 Consensus size: 47
8900570 AGTAATGCAA
* *
8900580 ATAAACTACTAATAATCA-AAATTATGGACAAGCCAT-CAAAATTATAG
1 ATAAACTACCAATAAT-ATAAATCATGGACAAGCC-TCCAAAATTATAG
* * ** *
8900627 ATAAACTGCCAATAATATAAATCGTGGACAAGCCTCCAAAATTGCAA
1 ATAAACTACCAATAATATAAATCATGGACAAGCCTCCAAAATTATAG
*
8900674 ATAAACTGCCAATAA
1 ATAAACTACCAATAA
8900689 CTTCCACCTT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 2 0.04
47 51 0.96
ACGTcount: A:0.49, C:0.18, G:0.10, T:0.23
Consensus pattern (47 bp):
ATAAACTACCAATAATATAAATCATGGACAAGCCTCCAAAATTATAG
Found at i:8914082 original size:23 final size:23
Alignment explanation
Indices: 8914055--8914114 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 23
8914045 GATAGAAAGT
8914055 ATGAACTCTAATGTGATATATTC
1 ATGAACTCTAATGTGATATATTC
*
8914078 ATGAAATCTAACAAATGTGATATATTC
1 ATG-AA-CT--CTAATGTGATATATTC
*
8914105 ATGAAATCTA
1 ATGAACTCTA
8914115 TCTTACCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
23 5 0.17
24 2 0.07
25 3 0.10
26 2 0.07
27 18 0.60
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (23 bp):
ATGAACTCTAATGTGATATATTC
Found at i:8915284 original size:93 final size:93
Alignment explanation
Indices: 8915180--8915350 Score: 236
Period size: 93 Copynumber: 1.8 Consensus size: 93
8915170 GATAAAAATG
* * * * * *
8915180 GGATTTGATATATTCCTTA-CTAGATAAGGAAATGGAATTCAATTATTATTTAAAAGAGTTTTAG
1 GGATTTAATATATTCCGTATC-AAATAAGAAAATAGAATTCAATTATTATTTAAAAGAGTTTCAG
8915244 ATAAATAATAATTAAAATTTAAATCAAAA
65 ATAAATAATAATTAAAATTTAAATCAAAA
* * * *
8915273 GGATTTAATATATTCCGTATCAAATAAGAAAATATAATTTAGTTATTATTTAAAAGAGTTTCAGG
1 GGATTTAATATATTCCGTATCAAATAAGAAAATAGAATTCAATTATTATTTAAAAGAGTTTCAGA
8915338 TAAATAATAATTA
66 TAAATAATAATTA
8915351 GAACAAAATT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
93 66 0.99
94 1 0.01
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.37
Consensus pattern (93 bp):
GGATTTAATATATTCCGTATCAAATAAGAAAATAGAATTCAATTATTATTTAAAAGAGTTTCAGA
TAAATAATAATTAAAATTTAAATCAAAA
Found at i:8915432 original size:49 final size:48
Alignment explanation
Indices: 8915302--8915432 Score: 156
Period size: 49 Copynumber: 2.7 Consensus size: 48
8915292 TCAAATAAGA
* * * ** *
8915302 AAATATAATTTAGTTATTATTTAAAAGAGTTTCAGGTAAATAATAATT
1 AAATAAAATTTAATTATTATTTAAAAGAGTTTTAAATAAATAACAATT
*
8915350 AGAACAAAATTTAATTATTATTTAAAAGAGTTTTAAATAAA-AGACAATT
1 A-AATAAAATTTAATTATTATTTAAAAGAGTTTTAAATAAATA-ACAATT
*
8915399 AAATAGAATTTAAATTATTATTTAAAAGAGTTTT
1 AAATAAAATTT-AATTATTATTTAAAAGAGTTTT
8915433 TAAAATTCAA
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
48 10 0.14
49 61 0.86
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (48 bp):
AAATAAAATTTAATTATTATTTAAAAGAGTTTTAAATAAATAACAATT
Found at i:8917833 original size:40 final size:40
Alignment explanation
Indices: 8917778--8917995 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
8917768 TGGATGATAA
* * *
8917778 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
8917818 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
8917858 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
8917898 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
8917938 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
8917978 CC-GGTTAACTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
8917996 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 148 0.90
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:8922587 original size:24 final size:24
Alignment explanation
Indices: 8922560--8922605 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
8922550 AACTAGATTC
8922560 CGAGTTTCT-GAACTCAAGATATTT
1 CGAGTTT-TGGAACTCAAGATATTT
8922584 CGAGTTTTGGAACTCAAGATAT
1 CGAGTTTTGGAACTCAAGATAT
8922606 GATTTTTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (24 bp):
CGAGTTTTGGAACTCAAGATATTT
Found at i:8925858 original size:48 final size:48
Alignment explanation
Indices: 8925783--8926101 Score: 397
Period size: 48 Copynumber: 6.6 Consensus size: 48
8925773 ATGATGCCTC
* *
8925783 ATGCCGATGCCATGTCCCAGACATGGTCATACACTGGCTCACATAACG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* *
8925831 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * * * *
8925879 ACGCTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAGATAAAA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
** * * * **
8925927 ACT-TTGATGCCATGTCCCAGTCATGGTCTTATACTAGCTCACATGGCA
1 A-TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * *
8925975 ACGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATAATA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * *
8926023 ATGCCAATGACATGTCCCATACATGGTCTTACACTGGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * *
8926071 ATACCAATGCCATGTCCCAGAAATGGTCTTA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTA
8926102 TACCGGAACA
Statistics
Matches: 228, Mismatches: 41, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
48 228 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
Found at i:8929214 original size:37 final size:37
Alignment explanation
Indices: 8929112--8929214 Score: 116
Period size: 37 Copynumber: 2.8 Consensus size: 37
8929102 TCGTTTACTT
* *
8929112 GATGCCATAGTCCAACTATGGTCTTACACAAAATCAC
1 GATGCCATAGCCCAACTATGGTCTTACATAAAATCAC
* * * *** *
8929149 AATGACATAGCCCAACTATGGCCTTACATGTCATTAC
1 GATGCCATAGCCCAACTATGGTCTTACATAAAATCAC
*
8929186 GATGCCATAGCCCAGCTATGGTCTTACAT
1 GATGCCATAGCCCAACTATGGTCTTACAT
8929215 TCCATACTTT
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (37 bp):
GATGCCATAGCCCAACTATGGTCTTACATAAAATCAC
Found at i:8937483 original size:13 final size:13
Alignment explanation
Indices: 8937467--8937499 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8937457 TTTAATTAAA
*
8937467 TTAGTTAATTAGT
1 TTAGATAATTAGT
8937480 TTAGATAATTAGT
1 TTAGATAATTAGT
8937493 TTA-ATAA
1 TTAGATAA
8937500 GGCTAGATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:8940022 original size:39 final size:39
Alignment explanation
Indices: 8939968--8940045 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
8939958 AGTCCTCCCT
*
8939968 ATATGGCAACATAGGTGGACAGCAAGGCTAGCTAGCACA
1 ATATGGCAACATAGGTGGACAGAAAGGCTAGCTAGCACA
*
8940007 ATATGGCAACATAGGTGGACGGAAAGGCTAGCTAGCACA
1 ATATGGCAACATAGGTGGACAGAAAGGCTAGCTAGCACA
8940046 TGCTAAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.36, C:0.19, G:0.29, T:0.15
Consensus pattern (39 bp):
ATATGGCAACATAGGTGGACAGAAAGGCTAGCTAGCACA
Found at i:8949875 original size:16 final size:16
Alignment explanation
Indices: 8949851--8949881 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8949841 CATTATGTCT
*
8949851 TATTTAATATTTGTGC
1 TATTGAATATTTGTGC
8949867 TATTGAATATTTGTG
1 TATTGAATATTTGTG
8949882 GATAAAGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.03, G:0.16, T:0.55
Consensus pattern (16 bp):
TATTGAATATTTGTGC
Found at i:8950269 original size:221 final size:222
Alignment explanation
Indices: 8949886--8950332 Score: 842
Period size: 221 Copynumber: 2.0 Consensus size: 222
8949876 TTTGTGGATA
8949886 AAGTTGGGCAATGAAAGCTGATTTATGAATGTGGTACTTGAGTCGGATTAAAATGGCAAACTGTT
1 AAGTTGGGCAATGAAAGCTGATTTATGAATGTGGTACTTGAGTCGGATTAAAATGGCAAACTGTT
*
8949951 TGGAAATTTTTATTAGTTCATATGAGTGGTTTAATTGTTTGAGTTGATGACATATTTATATTCAT
66 TGGAAATTTTGATTAGTTCATATGAGTGGTTTAATTGTTTGAGTTGATGACATATTTATATTCAT
* *
8950016 GTATGATATGCAAATGTTGTTTTTAGGTAACAAATGCTATTATGGAATATTTCA-TTTTTATGCA
131 GTATGATATGCAAATGTTGTTTTTAGGTAACAAATGCTATTACGGAATATTTCATTTTTTATGAA
8950080 ATTAAATGAAGTATGTTTGCTTTTATT
196 ATTAAATGAAGTATGTTTGCTTTTATT
8950107 AAGTTGGGCAATGAAAGCTGATTTATGAATGTGGTACTTGAGTCGGATTAAAATGGCAAACTGTT
1 AAGTTGGGCAATGAAAGCTGATTTATGAATGTGGTACTTGAGTCGGATTAAAATGGCAAACTGTT
8950172 TGGAAATTTTGATTAGTTCATATGAGTGGTTTAATTGTTTGAGTTGATGACATATTTATATTCAT
66 TGGAAATTTTGATTAGTTCATATGAGTGGTTTAATTGTTTGAGTTGATGACATATTTATATTCAT
8950237 GTATGATATGCAAATGTTGTTTTTAGGTAACAAATGCTATTACGGAATATTTCATTTTTTATGAA
131 GTATGATATGCAAATGTTGTTTTTAGGTAACAAATGCTATTACGGAATATTTCATTTTTTATGAA
* *
8950302 ATTAAATGATGTATGTTTTCTTTTATT
196 ATTAAATGAAGTATGTTTGCTTTTATT
8950329 AAGT
1 AAGT
8950333 ATGTGTATAA
Statistics
Matches: 220, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
221 182 0.83
222 38 0.17
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (222 bp):
AAGTTGGGCAATGAAAGCTGATTTATGAATGTGGTACTTGAGTCGGATTAAAATGGCAAACTGTT
TGGAAATTTTGATTAGTTCATATGAGTGGTTTAATTGTTTGAGTTGATGACATATTTATATTCAT
GTATGATATGCAAATGTTGTTTTTAGGTAACAAATGCTATTACGGAATATTTCATTTTTTATGAA
ATTAAATGAAGTATGTTTGCTTTTATT
Found at i:8951874 original size:42 final size:42
Alignment explanation
Indices: 8951724--8951887 Score: 179
Period size: 42 Copynumber: 3.9 Consensus size: 42
8951714 TACCTTACCA
* * * *
8951724 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATAG
1 ATGCCATATCCCAGATATAGTCTTACACGTAATCTCATATCG
* ** * * *
8951766 ATGCCAATAGCTTAGCTATAGTCTTACACGAAATATCATATCG
1 ATGCC-ATATCCCAGATATAGTCTTACACGTAATCTCATATCG
*
8951809 ATGCCATATCACAGATACT-GTCTTACACG-AAGTCTCATATCG
1 ATGCCATATCCCAGATA-TAGTCTTACACGTAA-TCTCATATCG
*
8951851 ATGCCATATCCCAGATATAGTCTTGCACGTAATCTCA
1 ATGCCATATCCCAGATATAGTCTTACACGTAATCTCA
8951888 GTAACCCTAA
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 3 0.03
42 62 0.62
43 35 0.35
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATAGTCTTACACGTAATCTCATATCG
Found at i:8957145 original size:37 final size:37
Alignment explanation
Indices: 8957095--8957239 Score: 211
Period size: 37 Copynumber: 3.9 Consensus size: 37
8957085 ACCTTTAGCT
* *
8957095 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
8957132 CGGACAAAATCTCCACACGTAA-TCATCGGGTCTTACC
1 CGGACAAAATCTCCACACG-AAGTCATCGGGTCTTACC
* *
8957169 CGGGCAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
* * *
8957206 CGGACATACTCTCCACACGTAGTCATCGGGTCTT
1 CGGACAAAATCTCCACACGAAGTCATCGGGTCTT
8957240 TAGAGCTCGG
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
36 1 0.01
37 96 0.97
38 2 0.02
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
Found at i:8957197 original size:74 final size:74
Alignment explanation
Indices: 8957101--8957239 Score: 233
Period size: 74 Copynumber: 1.9 Consensus size: 74
8957091 AGCTCGGACG
*
8957101 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTT
8957166 ACCCGGGCA
66 ACCCGGGCA
* * * *
8957175 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATACTCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTT
8957240 TAGAGCTCGG
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 60 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.24
Consensus pattern (74 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTT
ACCCGGGCA
Found at i:8957436 original size:47 final size:47
Alignment explanation
Indices: 8957358--8957814 Score: 779
Period size: 47 Copynumber: 9.6 Consensus size: 47
8957348 CCCTTCGGGA
* * * * * *
8957358 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8957405 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8957452 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8957499 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8957546 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8957595 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8957642 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8957689 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8957736 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8957783 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
8957815 TCAAATATAC
Statistics
Matches: 390, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
47 324 0.83
49 66 0.17
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:8957773 original size:237 final size:237
Alignment explanation
Indices: 8957358--8957814 Score: 833
Period size: 237 Copynumber: 1.9 Consensus size: 237
8957348 CCCTTCGGGA
* * * * *
8957358 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
8957423 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
8957488 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
8957553 CATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
196 CATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
8957595 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
8957660 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
8957725 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
8957790 CATATATATACACTTTCACATTCAT
196 CATATATATACACTTTCACATTCAT
8957815 TCAAATATAC
Statistics
Matches: 211, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
237 211 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (237 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:8960190 original size:85 final size:85
Alignment explanation
Indices: 8960061--8960919 Score: 1700
Period size: 85 Copynumber: 10.1 Consensus size: 85
8960051 TATTTTATTG
*
8960061 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
8960126 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
8960146 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
8960211 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
8960231 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
8960296 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
8960316 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
8960381 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
8960401 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
8960466 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
8960486 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
8960551 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
8960571 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
8960636 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
8960656 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
8960721 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
8960741 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
8960806 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
8960826 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
8960891 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
8960911 CCCATGCTC
1 CCCATGCTC
8960920 ATGGCCGGCC
Statistics
Matches: 772, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 772 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.39
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTCCCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:8976511 original size:7 final size:7
Alignment explanation
Indices: 8976499--8976642 Score: 59
Period size: 7 Copynumber: 21.0 Consensus size: 7
8976489 TGCATGGATC
8976499 AGGGTTT
1 AGGGTTT
8976506 AGGGTTT
1 AGGGTTT
**
8976513 AGAATTT
1 AGGGTTT
* *
8976520 A-GATTG
1 AGGGTTT
*
8976526 AAGGTTT
1 AGGGTTT
8976533 AGGG--T
1 AGGGTTT
*
8976538 ATGGTTT
1 AGGGTTT
* *
8976545 TGAGTTT
1 AGGGTTT
*
8976552 AGGATTT
1 AGGGTTT
*
8976559 A-GTTTAT
1 AGGGTT-T
*
8976566 AGGGGTT
1 AGGGTTT
*
8976573 AAGGTTT
1 AGGGTTT
**
8976580 AAAGTTT
1 AGGGTTT
8976587 AGGGTATT
1 AGGGT-TT
8976595 A-GGTTT
1 AGGGTTT
8976601 AGGGTTT
1 AGGGTTT
* *
8976608 TGAGTATT
1 AGGGT-TT
8976616 -GGGTTT
1 AGGGTTT
8976622 AGGGTATT
1 AGGGT-TT
8976630 A-GGTTT
1 AGGGTTT
8976636 AGGGTTT
1 AGGGTTT
8976643 GGTCTATTGG
Statistics
Matches: 101, Mismatches: 25, Indels: 22
0.68 0.17 0.15
Matches are distributed among these distances:
5 4 0.04
6 15 0.15
7 72 0.71
8 10 0.10
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (7 bp):
AGGGTTT
Found at i:8976604 original size:35 final size:36
Alignment explanation
Indices: 8976547--8976639 Score: 86
Period size: 35 Copynumber: 2.6 Consensus size: 36
8976537 TATGGTTTTG
* *
8976547 AGTTTAGGAT-TTAGTTTATAGGGGTTAAG-GT-TTAA
1 AGTTTAGGGTATTAGGTT-TAGGGGTTAAGAGTATT-A
** *
8976582 AGTTTAGGGTATTAGGTTTA-GGGTTTTGAGTATTG
1 AGTTTAGGGTATTAGGTTTAGGGGTTAAGAGTATTA
*
8976617 GGTTTAGGGTATTAGGTTTAGGG
1 AGTTTAGGGTATTAGGTTTAGGG
8976640 TTTGGTCTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
34 6 0.12
35 32 0.67
36 10 0.21
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (36 bp):
AGTTTAGGGTATTAGGTTTAGGGGTTAAGAGTATTA
Found at i:8976640 original size:35 final size:34
Alignment explanation
Indices: 8976583--8976659 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 34
8976573 AAGGTTTAAA
* *
8976583 GTTTAGGGTATTAGGTTTAGGGTTTTGAGTATTGG
1 GTTTAGGGTATTAGGTTTAGGGTTTGGACTATT-G
*
8976618 GTTTAGGGTATTAGGTTTAGGGTTTGGTCTATTG
1 GTTTAGGGTATTAGGTTTAGGGTTTGGACTATTG
8976652 GTTTAGGG
1 GTTTAGGG
8976660 CTTAATTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 9 0.23
35 30 0.77
ACGTcount: A:0.16, C:0.01, G:0.38, T:0.45
Consensus pattern (34 bp):
GTTTAGGGTATTAGGTTTAGGGTTTGGACTATTG
Found at i:8977054 original size:123 final size:122
Alignment explanation
Indices: 8976857--8977126 Score: 373
Period size: 123 Copynumber: 2.2 Consensus size: 122
8976847 AAAATTTCGC
* * *
8976857 AAAAA-ATGATAAATTGAATGAAAACGACGTTGTTTTAGTTGGTGGGTAGTGGAATTAGTGGCGC
1 AAAAATATGAGAAATTGAATGGAAACGACGTTGTTTTAGTTGGGGGGTAGTGGAATTAGTGGCGC
* * * *
8976921 TAGGCAATAAACGCCGCAATAGATCAGAATTGGAGGTGCTTATTAGAAAATGCCGCT
66 TAGGCAATAAACGCAGCAATAGATCAGAATTAGAGGAGCTTATTAGAAAATGCCACT
*
8976978 AAAAATATGAGAAATTGAATGGAAACGGC-TTCGTTTTAGTTGGCGGGGTAGTGGAATTAGTGGC
1 AAAAATATGAGAAATTGAATGGAAACGACGTT-GTTTTAGTTGG-GGGGTAGTGGAATTAGTGGC
* * * * * *
8977042 GTTATGTAATAAATGCAGCAATAGATCAGCATTAGCGGAGCTTATTAGAAAATGCCACT
64 GCTAGGCAATAAACGCAGCAATAGATCAGAATTAGAGGAGCTTATTAGAAAATGCCACT
*
8977101 AAAAATATGAGAAGTTGAATGGAAAC
1 AAAAATATGAGAAATTGAATGGAAAC
8977127 AGCGTTATTT
Statistics
Matches: 131, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
121 7 0.05
122 31 0.24
123 93 0.71
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (122 bp):
AAAAATATGAGAAATTGAATGGAAACGACGTTGTTTTAGTTGGGGGGTAGTGGAATTAGTGGCGC
TAGGCAATAAACGCAGCAATAGATCAGAATTAGAGGAGCTTATTAGAAAATGCCACT
Found at i:8977157 original size:123 final size:123
Alignment explanation
Indices: 8976889--8977171 Score: 349
Period size: 123 Copynumber: 2.3 Consensus size: 123
8976879 AACGACGTTG
* * * * *
8976889 TTTTAGTTGGTG-GGTAGTGGAATTAGTGGCGCTAGGCAATAAACGCCGCAATAGATCAGAATTG
1 TTTTAGTTGGCGCGGTAGTGGAATTAGTGGCGCTATGTAATAAACGCAGCAATAGATCAGAATTA
* * * *
8976953 GAGGTGCTTATTAGAAAATGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCTTCG
66 GAGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGCTTCA
* * * *
8977011 TTTTAGTTGGCGGGGTAGTGGAATTAGTGGCGTTATGTAATAAATGCAGCAATAGATCAGCATTA
1 TTTTAGTTGGCGCGGTAGTGGAATTAGTGGCGCTATGTAATAAACGCAGCAATAGATCAGAATTA
* *
8977076 GCGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAGTTGAATGGAAACAGCGTT-A
66 GAGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGC-TTCA
* * *
8977134 TTTTA-TGTGGCTCGGT-TTAGGAATTAGCGGCGCTATGT
1 TTTTAGT-TGGCGCGGTAGT-GGAATTAGTGGCGCTATGT
8977172 TGGAAACGCT
Statistics
Matches: 138, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
122 13 0.09
123 123 0.89
124 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (123 bp):
TTTTAGTTGGCGCGGTAGTGGAATTAGTGGCGCTATGTAATAAACGCAGCAATAGATCAGAATTA
GAGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGCTTCA
Found at i:8977196 original size:123 final size:123
Alignment explanation
Indices: 8976889--8977220 Score: 298
Period size: 123 Copynumber: 2.7 Consensus size: 123
8976879 AACGACGTTG
* * * * * * * * * *
8976889 TTTTAGTTGGTG-GGTAGTGGAATTAGTGGCGCTAGGCAATAAACGCCGCAATAGATCAGAATTG
1 TTTTAGTTGGCGCGGTAGTGGAATTAGCGGCGCTATGTAAGAAACGCAGCAAAAAATCAGCATTA
** * * * *
8976953 GAGGTGCTTATTAGAAAATGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCTTCG
66 CTGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGCTTCA
* * * * * * *
8977011 TTTTAGTTGGCGGGGTAGTGGAATTAGTGGCGTTATGTAATAAATGCAGCAATAGATCAGCATTA
1 TTTTAGTTGGCGCGGTAGTGGAATTAGCGGCGCTATGTAAGAAACGCAGCAAAAAATCAGCATTA
*
8977076 GC-GGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAGTTGAATGGAAACAGCGTT-A
66 -CTGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGC-TTCA
* * ** * *
8977134 TTTTA-TGTGGCTCGGT-TTAGGAATTAGCGGCGCTATGTTGGAAACGCTGCAAAAAATTAGCAT
1 TTTTAGT-TGGCGCGGTAGT-GGAATTAGCGGCGCTATGTAAGAAACGCAGCAAAAAATCAGCAT
*
8977197 TACTGGTGCTTATTCA-AAAATGCC
64 TACTGGAGCTTATT-AGAAAATGCC
8977221 GCAAATGTCA
Statistics
Matches: 175, Mismatches: 28, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
122 14 0.08
123 158 0.90
124 3 0.02
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (123 bp):
TTTTAGTTGGCGCGGTAGTGGAATTAGCGGCGCTATGTAAGAAACGCAGCAAAAAATCAGCATTA
CTGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGCTTCA
Found at i:8978527 original size:5 final size:5
Alignment explanation
Indices: 8978517--8978547 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
8978507 ATTTTGTCCT
8978517 TATAC TATAC TATAC TATAC TATAC TATAC T
1 TATAC TATAC TATAC TATAC TATAC TATAC T
8978548 GCATCAAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAC
Found at i:8980105 original size:104 final size:104
Alignment explanation
Indices: 8979884--8980242 Score: 585
Period size: 104 Copynumber: 3.4 Consensus size: 104
8979874 TTTTTAAATA
8979884 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAA-TAGTATTTAAAGTTTTATTTTGAATGTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTA-TATTTAAAGTTTTATTTT-AA--TT
*
8979948 ATTTTATTTTATTTTATTTTAATCACGAAAAATATTTGTCTAC
62 ATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTTCTAC
* *
8979991 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATTTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAATTATTT
*
8980056 TATTTTATTTTATTTTAATCACTAAAAATATTTTTCTAC
66 TATTTTATTTTATTTTAATCACGAAAAATATTTTTCTAC
*
8980095 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAATTATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAATTATTT
* *
8980160 TATTTTATTTTAATTTAATCACGAAAAATATTTTTTTAC
66 TATTTTATTTTATTTTAATCACGAAAAATATTTTTCTAC
** *
8980199 TTTTATTTTATTGGTAAATTACCTAATTAAATTAAATTGTATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATATTT
8980243 TTAATTATTT
Statistics
Matches: 239, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
104 182 0.76
106 2 0.01
107 53 0.22
108 2 0.01
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (104 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAATTATTT
TATTTTATTTTATTTTAATCACGAAAAATATTTTTCTAC
Found at i:8980569 original size:47 final size:47
Alignment explanation
Indices: 8980500--8980660 Score: 313
Period size: 47 Copynumber: 3.4 Consensus size: 47
8980490 AATCCCATCA
8980500 ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
8980547 ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
*
8980594 ACATAAATATATATCATATCTTACATAATTTACATAACTTACATAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
8980641 ACATAAATATATATCATATC
1 ACATAAATATATATCATATC
8980661 ATACTTACAT
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (47 bp):
ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
Found at i:8980639 original size:9 final size:9
Alignment explanation
Indices: 8980514--8980676 Score: 63
Period size: 9 Copynumber: 18.0 Consensus size: 9
8980504 AAATATATAT
*
8980514 CATATCTTA
1 CATAACTTA
*
8980523 CATAATTTA
1 CATAACTTA
8980532 CATAACTTA
1 CATAACTTA
*
8980541 CA-AA-ATA
1 CATAACTTA
*
8980548 CATAAATATATA
1 CAT-AA-CT-TA
*
8980560 TCATATCTTA
1 -CATAACTTA
*
8980570 CATAATTTA
1 CATAACTTA
8980579 CATAACTTA
1 CATAACTTA
*
8980588 CA-AA-ATA
1 CATAACTTA
*
8980595 CATAAATATATA
1 CAT-AA-CT-TA
*
8980607 TCATATCTTA
1 -CATAACTTA
*
8980617 CATAATTTA
1 CATAACTTA
8980626 CATAACTTA
1 CATAACTTA
8980635 CATAA--TA
1 CATAACTTA
*
8980642 CATAA-ATA
1 CATAACTTA
* * *
8980650 TATATCATA
1 CATAACTTA
8980659 TCAT-ACTTA
1 -CATAACTTA
8980668 CATAACTTA
1 CATAACTTA
8980677 ATTATACTTA
Statistics
Matches: 116, Mismatches: 22, Indels: 32
0.68 0.13 0.19
Matches are distributed among these distances:
7 15 0.13
8 12 0.10
9 69 0.59
10 6 0.05
11 2 0.02
12 6 0.05
13 6 0.05
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:8986541 original size:19 final size:17
Alignment explanation
Indices: 8986493--8986542 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 17
8986483 AAATAGATAT
8986493 TTATTTTAATATTA-AA
1 TTATTTTAATATTATAA
8986509 TTATTTT-ATAATTATTAA
1 TTATTTTAAT-ATTA-TAA
8986527 TTATTATTAATATTAT
1 TTATT-TTAATATTAT
8986543 CTTATATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 2 0.07
16 11 0.38
18 8 0.28
19 6 0.21
20 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATTTTAATATTATAA
Found at i:8987463 original size:27 final size:27
Alignment explanation
Indices: 8987433--8987497 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
8987423 ACCCATGGTT
8987433 TGTAAAATTACTGAAATACCCTCGACC
1 TGTAAAATTACTGAAATACCCTCGACC
* *
8987460 TGTAAAATTATTGAAATACCCTCGACT
1 TGTAAAATTACTGAAATACCCTCGACC
8987487 TGTAAAATTAC
1 TGTAAAATTAC
8987498 CAAAGTACCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTCGACC
Found at i:8987506 original size:27 final size:26
Alignment explanation
Indices: 8987410--8987507 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 26
8987400 TTAGTTTACC
**
8987410 AAATTACCAAAATACCCAT-GGTTTGTA
1 AAATTACC-AAATACCC-TCGACTTGTA
* *
8987437 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTAC-CAAATACCCTCGACTTGTA
**
8987464 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTA-CCAAATACCCTCGACTTGTA
8987491 AAATTACCAAAGTACCC
1 AAATTACCAAA-TACCC
8987508 CTAATTTACA
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
26 4 0.07
27 55 0.93
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (26 bp):
AAATTACCAAATACCCTCGACTTGTA
Found at i:8987576 original size:27 final size:27
Alignment explanation
Indices: 8987546--8987928 Score: 366
Period size: 27 Copynumber: 14.3 Consensus size: 27
8987536 CAATTTATAA
*
8987546 AATTACCGAAATAACCCTGTAGGGAAG
1 AATTACCGAAATAACCCTGTAGGGTAG
** *
8987573 AATTATTGAAAT-ACCCTTTAGGGTAG
1 AATTACCGAAATAACCCTGTAGGGTAG
* * *
8987599 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATAACCCTGTAGGGTAG
** * * *
8987626 AATTACTAAAATACCCCTGTAAGCTAG
1 AATTACCGAAATAACCCTGTAGGGTAG
*
8987653 AATTACTGAAAT-ACCCTTGTAGGGTAG
1 AATTACCGAAATAACCC-TGTAGGGTAG
* *
8987680 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATAACCCTGTAGGGTAG
* * *
8987707 AATTA-CTAAAAAACCCCTATAGGGTAG
1 AATTACCGAAATAA-CCCTGTAGGGTAG
* * *
8987734 AATTATCGAAATATCCTTGTAGGGT-G
1 AATTACCGAAATAACCCTGTAGGGTAG
* * *
8987760 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATAACCCTGTAGGGTAG
** *
8987787 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATAACCCTGTAGGGTAG
8987814 AATTACCGAAAT-ACCCTTGTAGGGTAG
1 AATTACCGAAATAACCC-TGTAGGGTAG
* *
8987841 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATAACCCTGTAGGGTAG
* *
8987868 AATTACTGAAAT-ACCCTTGTAGGGTAA
1 AATTACCGAAATAACCC-TGTAGGGTAG
* * *
8987895 AATTACCGAGAT-ACCCTTGTGGGGTAA
1 AATTACCGAAATAACCC-TGTAGGGTAG
8987922 AATTACC
1 AATTACC
8987929 ATTTTACCCC
Statistics
Matches: 296, Mismatches: 51, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
26 56 0.19
27 229 0.77
28 11 0.04
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATAACCCTGTAGGGTAG
Found at i:8987676 original size:54 final size:54
Alignment explanation
Indices: 8987546--8987927 Score: 446
Period size: 54 Copynumber: 7.1 Consensus size: 54
8987536 CAATTTATAA
* * * * *
8987546 AATTACCGAAATAACCCTGTAGGGAAGAATTATTGAAATA-CCCTTTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * * *
8987599 AAATACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAAGCTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
8987653 AATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * *
8987707 AATTACTAAAAAACCCCTATAGGGTAGAATTA-TCGAAATATCCTTGTAGGGT-G
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* *
8987760 AAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * *
8987814 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * * * *
8987868 AATTACTGAAATACCCTTGTAGGGTAAAATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
8987922 AATTAC
1 AATTAC
8987928 CATTTTACCC
Statistics
Matches: 279, Mismatches: 46, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
53 78 0.28
54 201 0.72
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (54 bp):
AATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:8987738 original size:161 final size:161
Alignment explanation
Indices: 8987560--8987924 Score: 561
Period size: 161 Copynumber: 2.3 Consensus size: 161
8987550 ACCGAAATAA
* *
8987560 CCCTGTAGGGAAGAATTATTGAAATACCCTT-TAGGGTAGAAATACCGAAATACCCCTATAGGGT
1 CCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT-GAAATACCGAAATACCCCTATAGGGT
*
8987624 AGAATTACTAAAATACCCCTGTAAGCTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGA
65 AGAATTACTAAAATACCCCTGTAAGCTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGA
8987689 AATACCCCTGTAGGGTAGAATTACTAAAAAAC
130 AATACCCCTGTAGGGTAGAATTACTAAAAAAC
* * * *
8987721 CCCTATAGGGTAGAATTATCGAAATATCCTTGTAGGGTGAAATACTGAAATACCCCTGTAGGGTA
1 CCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTGAAATACCGAAATACCCCTATAGGGTA
* *
8987786 GAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAA
66 GAATTACTAAAATACCCCTGTAAGCTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAA
* *
8987851 ATACCCCTGTAGGGTAGAATTACTGAAATAC
131 ATACCCCTGTAGGGTAGAATTACTAAAAAAC
* * * * * *
8987882 CCTTGTAGGGTAAAATTACCGAGATACCCTTGTGGGGTAAAAT
1 CCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTGAAAT
8987925 TACCATTTTA
Statistics
Matches: 184, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
161 178 0.97
162 6 0.03
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (161 bp):
CCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTGAAATACCGAAATACCCCTATAGGGTA
GAATTACTAAAATACCCCTGTAAGCTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAA
ATACCCCTGTAGGGTAGAATTACTAAAAAAC
Done.