Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 250 of 284
Found at i:83907041 original size:18 final size:18
Alignment explanation
Indices: 83907018--83907056 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
83907008 TTATTATCAC
83907018 TTTCACTTTCAATTTCAA
1 TTTCACTTTCAATTTCAA
*
83907036 TTTCACTTTCACTTTCAA
1 TTTCACTTTCAATTTCAA
83907054 TTT
1 TTT
83907057 TGATCACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTCACTTTCAATTTCAA
Found at i:83907790 original size:16 final size:15
Alignment explanation
Indices: 83907766--83907804 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
83907756 ATTCTCCCTT
*
83907766 TTTCTTTTCTTTCTCC
1 TTTCCTTTCTTTCT-C
*
83907782 TTTCCTTTCTTTCTT
1 TTTCCTTTCTTTCTC
83907797 TTTCCTTT
1 TTTCCTTT
83907805 GTTCTCTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTCCTTTCTTTCTC
Found at i:83907796 original size:20 final size:21
Alignment explanation
Indices: 83907766--83907804 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
83907756 ATTCTCCCTT
83907766 TTTCTTTTCTTTCTCCTTTCC
1 TTTCTTTTCTTTCTCCTTTCC
*
83907787 TTTC-TTTCTTTTTCCTTT
1 TTTCTTTTCTTTCTCCTTT
83907805 GTTCTCTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTCTTTTCTTTCTCCTTTCC
Found at i:83908059 original size:21 final size:21
Alignment explanation
Indices: 83908024--83908064 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
83908014 TATTTATCTC
* *
83908024 ATAAATATTTTTTTAATAATA
1 ATAAATATCTATTTAATAATA
*
83908045 ATAAATATCTATTTACTAAT
1 ATAAATATCTATTTAATAAT
83908065 TAAATAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAAATATCTATTTAATAATA
Found at i:83914109 original size:6 final size:6
Alignment explanation
Indices: 83914095--83914133 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
83914085 TGAACAAAAT
* * *
83914095 TGAAGG TGAAAG TGAAAT TGAAAT TGAAAG TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA
83914134 TAAGAATTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (6 bp):
TGAAAG
Found at i:83914114 original size:18 final size:18
Alignment explanation
Indices: 83914091--83914129 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
83914081 TCTGTGAACA
*
83914091 AAATTGAAGGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
*
83914109 AAATTGAAATTGAAAGTG
1 AAATTGAAAGTGAAAGTG
83914127 AAA
1 AAA
83914130 GTGATAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:83914116 original size:12 final size:12
Alignment explanation
Indices: 83914091--83914129 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
83914081 TCTGTGAACA
*
83914091 AAATTGAAGGTG
1 AAATTGAAAGTG
* *
83914103 AAAGTGAAATTG
1 AAATTGAAAGTG
83914115 AAATTGAAAGTG
1 AAATTGAAAGTG
83914127 AAA
1 AAA
83914130 GTGATAAGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (12 bp):
AAATTGAAAGTG
Found at i:83917292 original size:37 final size:37
Alignment explanation
Indices: 83917242--83917320 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
83917232 TTATTACGAA
* *
83917242 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
83917279 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
83917316 GTCTT
1 GTCTT
83917321 TAGAGCTCGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:83917541 original size:22 final size:22
Alignment explanation
Indices: 83917514--83917636 Score: 60
Period size: 23 Copynumber: 5.3 Consensus size: 22
83917504 TTTCACATTC
83917514 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
83917536 ATCACACATAT-G-CATGCTC-ACGTT
1 AT--CACAT-TGGCCAT--TCGGCCTT
83917560 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
83917583 ATCACACATAT-G-CATGCTC-ACGTT
1 AT--CACAT-TGGCCAT--TCGGCCTT
83917607 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
83917630 ATCACAT
1 ATCACAT
83917637 ATATATACAC
Statistics
Matches: 75, Mismatches: 8, Indels: 36
0.63 0.07 0.30
Matches are distributed among these distances:
22 17 0.23
23 24 0.32
24 24 0.32
25 10 0.13
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:83917565 original size:25 final size:25
Alignment explanation
Indices: 83917536--83917613 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 25
83917526 ATTCGGCCTT
83917536 ATCACACATATGCATGCTCACGTTC
1 ATCACACATATGCATGCTCACGTTC
* *
83917561 AT--CACAT-TGGCCAT--TCGGCCTT-
1 ATCACACATAT-G-CATGCTC-ACGTTC
83917583 ATCACACATATGCATGCTCACGTTC
1 ATCACACATATGCATGCTCACGTTC
83917608 ATCACA
1 ATCACA
83917614 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 5 0.12
23 12 0.30
24 12 0.30
25 11 0.28
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (25 bp):
ATCACACATATGCATGCTCACGTTC
Found at i:83917677 original size:49 final size:47
Alignment explanation
Indices: 83917439--83917712 Score: 327
Period size: 47 Copynumber: 5.7 Consensus size: 47
83917429 CCCTTCGGGA
* * * *
83917439 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
83917486 CCTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
83917533 CTTATCACACATATGCA-TGCTCACGTTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * * *
83917580 CTTATCACACATATGCA-TGCTCACGTTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
83917627 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
83917676 CTTATCACATATATATACACTTTCACATTCATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
83917713 AGAATCCTAA
Statistics
Matches: 204, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
46 1 0.00
47 135 0.66
49 67 0.33
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:83931286 original size:13 final size:11
Alignment explanation
Indices: 83931250--83931280 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
83931240 CCGCCCGTGT
83931250 TAATTTTTATA
1 TAATTTTTATA
*
83931261 TTATTTTTATA
1 TAATTTTTATA
83931272 TAATTTTTA
1 TAATTTTTA
83931281 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:83931418 original size:30 final size:30
Alignment explanation
Indices: 83931384--83931446 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
83931374 ACTTAACAAG
83931384 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
83931414 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
83931444 CAA
1 CAA
83931447 CAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:83932644 original size:26 final size:26
Alignment explanation
Indices: 83932615--83932695 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 26
83932605 CACAGTGTAA
83932615 AACTTAATCTAATC-AC-TCAAAATCTC
1 AACTTAAT-TAA-CAACGTCAAAATCTC
*
83932641 AACTTTTATTAACAACGTCAAAATCTC
1 AAC-TTAATTAACAACGTCAAAATCTC
*
83932668 AACTTTTATTAACAACGTCAAAATCTC
1 AAC-TTAATTAACAACGTCAAAATCTC
83932695 A
1 A
83932696 TTGGCAATTT
Statistics
Matches: 51, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
25 1 0.02
26 8 0.16
27 42 0.82
ACGTcount: A:0.42, C:0.23, G:0.02, T:0.32
Consensus pattern (26 bp):
AACTTAATTAACAACGTCAAAATCTC
Found at i:83932662 original size:27 final size:27
Alignment explanation
Indices: 83932631--83932695 Score: 130
Period size: 27 Copynumber: 2.4 Consensus size: 27
83932621 ATCTAATCAC
83932631 TCAAAATCTCAACTTTTATTAACAACG
1 TCAAAATCTCAACTTTTATTAACAACG
83932658 TCAAAATCTCAACTTTTATTAACAACG
1 TCAAAATCTCAACTTTTATTAACAACG
83932685 TCAAAATCTCA
1 TCAAAATCTCA
83932696 TTGGCAATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.42, C:0.23, G:0.03, T:0.32
Consensus pattern (27 bp):
TCAAAATCTCAACTTTTATTAACAACG
Found at i:83933226 original size:24 final size:24
Alignment explanation
Indices: 83933180--83933243 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 24
83933170 GCCAAACTTA
*
83933180 GGTGTCAAATTGGAAAAAAAAACTCG
1 GGTGCCAAATT-G-AAAAAAAACTCG
83933206 GGTGCCAAATTGAAAAAAAACTCG
1 GGTGCCAAATTGAAAAAAAACTCG
* *
83933230 CGTACCAAATTGAA
1 GGTGCCAAATTGAA
83933244 CATTATAACC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 24 0.69
25 1 0.03
26 10 0.29
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.19
Consensus pattern (24 bp):
GGTGCCAAATTGAAAAAAAACTCG
Found at i:83934300 original size:49 final size:50
Alignment explanation
Indices: 83934240--83934341 Score: 179
Period size: 50 Copynumber: 2.1 Consensus size: 50
83934230 ATTATTAGAA
83934240 AAATATTTA-TTTTTTACTGAATACCATTTAAAATTTTAATTAAGATATT
1 AAATATTTATTTTTTTACTGAATACCATTTAAAATTTTAATTAAGATATT
* *
83934289 AAATATTTATTTTTTTATTGAATACCATTTAAATTTTTAATTAAGATATT
1 AAATATTTATTTTTTTACTGAATACCATTTAAAATTTTAATTAAGATATT
83934339 AAA
1 AAA
83934342 CTCCACAAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 9 0.18
50 41 0.82
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.50
Consensus pattern (50 bp):
AAATATTTATTTTTTTACTGAATACCATTTAAAATTTTAATTAAGATATT
Found at i:83937134 original size:2 final size:2
Alignment explanation
Indices: 83937127--83937153 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
83937117 TTAATTGACT
83937127 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
83937154 GAGGATGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:83938404 original size:19 final size:21
Alignment explanation
Indices: 83938367--83938409 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
83938357 AATATTTTAT
83938367 TAAAAATTAGAAAATAAATTA
1 TAAAAATTAGAAAATAAATTA
*
83938388 TAAAAATT-GTAAA-AAATTA
1 TAAAAATTAGAAAATAAATTA
83938407 TAA
1 TAA
83938410 TTTTTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 4 0.19
21 8 0.38
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (21 bp):
TAAAAATTAGAAAATAAATTA
Found at i:83938578 original size:27 final size:27
Alignment explanation
Indices: 83938548--83938600 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
83938538 AACATGTGGC
*
83938548 AAAACATGATA-AAAAAATAAAAAATA
1 AAAAAATGATAGAAAAAATAAAAAATA
* * *
83938574 AAAAAATTATAGAAAAATTATAAAATA
1 AAAAAATGATAGAAAAAATAAAAAATA
83938601 CTTATTTTGG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.21
Consensus pattern (27 bp):
AAAAAATGATAGAAAAAATAAAAAATA
Found at i:83938748 original size:20 final size:21
Alignment explanation
Indices: 83938725--83938763 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
83938715 TTTTTATAAA
83938725 AATTTACAAT-TTTTTATTGT
1 AATTTACAATATTTTTATTGT
**
83938745 AATTTTTAATATTTTTATT
1 AATTTACAATATTTTTATT
83938764 TTTTATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (21 bp):
AATTTACAATATTTTTATTGT
Found at i:83938775 original size:48 final size:50
Alignment explanation
Indices: 83938695--83938790 Score: 135
Period size: 48 Copynumber: 1.9 Consensus size: 50
83938685 GTTGCCATAT
*
83938695 ATTTTATAATTTTTTTATGATTTTTATAAAAATTTACA-ATTTTTTATTGTA
1 ATTTTATAATATTTTTAT-ATTTTTATAAAAATTTA-ATATTTTTTATTGTA
*
83938746 ATTTT-TAATATTTTTAT-TTTTTATTAAAATTTAATATTTTTTATT
1 ATTTTATAATATTTTTATATTTTTATAAAAATTTAATATTTTTTATT
83938791 ATTTTTTGCC
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
47 1 0.02
48 25 0.60
50 11 0.26
51 5 0.12
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.65
Consensus pattern (50 bp):
ATTTTATAATATTTTTATATTTTTATAAAAATTTAATATTTTTTATTGTA
Found at i:83939540 original size:2 final size:2
Alignment explanation
Indices: 83939533--83939559 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
83939523 TTAAAAGGAG
83939533 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
83939560 TAAAAATGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:83950010 original size:42 final size:42
Alignment explanation
Indices: 83949963--83950045 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
83949953 ACAAACTATT
*
83949963 AATATAATTACCCATCTTTATATTTATGGGTTAAAAAGAATC
1 AATATAATTACCCATCTTTATATTTATGAGTTAAAAAGAATC
83950005 AATATAATTACCCATCTTTATATTTATGAGTTAAAAAGAAT
1 AATATAATTACCCATCTTTATATTTATGAGTTAAAAAGAAT
83950046 TATGAGTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (42 bp):
AATATAATTACCCATCTTTATATTTATGAGTTAAAAAGAATC
Found at i:83952230 original size:15 final size:15
Alignment explanation
Indices: 83952210--83952239 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
83952200 CTTTACCGAG
83952210 ATTCGCCATGTATCT
1 ATTCGCCATGTATCT
83952225 ATTCGCCATGTATCT
1 ATTCGCCATGTATCT
83952240 GCTAACTGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (15 bp):
ATTCGCCATGTATCT
Found at i:83960406 original size:35 final size:38
Alignment explanation
Indices: 83960337--83960407 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
83960327 TAAATATAAA
* * *
83960337 AATAATTATATTAAGAATGTTATTAAGCTATATTTAAT
1 AATAATTATATTAAGAATATGATTAAGATATATTTAAT
83960375 AATAATTATATTAA-AATATGATTAA-AT-TATTTA
1 AATAATTATATTAAGAATATGATTAAGATATATTTA
83960408 TTTTTATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
35 6 0.20
36 1 0.03
37 9 0.30
38 14 0.47
ACGTcount: A:0.48, C:0.01, G:0.06, T:0.45
Consensus pattern (38 bp):
AATAATTATATTAAGAATATGATTAAGATATATTTAAT
Found at i:83973790 original size:17 final size:18
Alignment explanation
Indices: 83973768--83973801 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83973758 CTCTCCTCGA
83973768 TAATGGGT-ACTTGTTCT
1 TAATGGGTAACTTGTTCT
*
83973785 TAATGGTTAACTTGTTC
1 TAATGGGTAACTTGTTC
83973802 AGTTACCGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.47
Consensus pattern (18 bp):
TAATGGGTAACTTGTTCT
Found at i:83984407 original size:48 final size:48
Alignment explanation
Indices: 83984348--83984459 Score: 134
Period size: 48 Copynumber: 2.3 Consensus size: 48
83984338 GTGGATGAGC
* **
83984348 TCCCATATAAGACCATATATGGGTTATGGCTTCGGCAGAGACATGTGA
1 TCCCATGTAAGACCATATATGGGACATGGCTTCGGCAGAGACATGTGA
* * * ** **
83984396 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGTTATGTGA
1 TCCCATGTAAGACCATATATGGGACATGGCTTCGGCAGAGACATGTGA
83984444 TCCCATGTAAGACCAT
1 TCCCATGTAAGACCAT
83984460 GTCCGGGACG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (48 bp):
TCCCATGTAAGACCATATATGGGACATGGCTTCGGCAGAGACATGTGA
Found at i:83984460 original size:48 final size:48
Alignment explanation
Indices: 83984390--83984482 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
83984380 CGGCAGAGAC
* * *
83984390 ATGTGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGTT
1 ATGTGATCCCATGTAAGACCATGTCCGGGACATGGCATTAGCATCGTT
*
83984438 ATGTGATCCCATGTAAGACCATGTCCGGGACGTGGCATTAGCATC
1 ATGTGATCCCATGTAAGACCATGTCCGGGACATGGCATTAGCATC
83984483 ATAATAAGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (48 bp):
ATGTGATCCCATGTAAGACCATGTCCGGGACATGGCATTAGCATCGTT
Found at i:83998024 original size:48 final size:48
Alignment explanation
Indices: 83997953--83998277 Score: 382
Period size: 48 Copynumber: 6.8 Consensus size: 48
83997943 GGGTAAGAGA
* * * *
83997953 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAACAAGG
* ***
83998001 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAACAAGG
* * * **
83998049 CCGATGCCAT-TTCCCAGACATGGTCTTACACTAGCTCTCAAAACAATA
1 CCGATGCCATGTT-CCAGACATGGTCTTACACTGGCTCACATAACAAGG
* ***
83998097 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAACAAGG
* * * * *
83998145 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAACAAGG
* ** ***
83998193 CCGATGCCATGTTCCAAACACAGTCTTACACTGGCTCACATATTGAGG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAACAAGG
83998241 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTC
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTC
83998278 GCATGTACCA
Statistics
Matches: 226, Mismatches: 49, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
47 2 0.01
48 222 0.98
49 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATAACAAGG
Found at i:83998117 original size:96 final size:96
Alignment explanation
Indices: 83997953--83998277 Score: 578
Period size: 96 Copynumber: 3.4 Consensus size: 96
83997943 GGGTAAGAGA
83997953 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
83998018 ACATGGTCTTACACTGGCTCACATATTGAGG
66 ACATGGTCTTACACTGGCTCACATATTGAGG
* * *
83998049 CCGATGCCATTTCCCAGACATGGTCTTACACTAGCTCTCAAAACAATACCGATGCCATGTTCCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
83998114 ACATGGTCTTACACTGGCTCACATATTGAGG
66 ACATGGTCTTACACTGGCTCACATATTGAGG
*
83998145 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
**
83998210 ACACAGTCTTACACTGGCTCACATATTGAGG
66 ACATGGTCTTACACTGGCTCACATATTGAGG
* *
83998241 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
83998278 GCATGTACCA
Statistics
Matches: 217, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 217 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
ACATGGTCTTACACTGGCTCACATATTGAGG
Found at i:84000212 original size:30 final size:29
Alignment explanation
Indices: 84000169--84000232 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
84000159 CAAGTAGCCG
* *
84000169 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGAACACTTACTGCCA
84000198 AAGCTAGTTTAAATCGAACACTTACTGCCA
1 AAGCTAG-TTAAATCGAACACTTACTGCCA
84000228 AAGCT
1 AAGCT
84000233 TCCAATTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCGAACACTTACTGCCA
Found at i:84004767 original size:30 final size:29
Alignment explanation
Indices: 84004724--84004787 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
84004714 CAAGTAGCCG
* *
84004724 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGAACACTTACTGCCA
84004753 AAGCTAGTTTAAATCGAACACTTACTGCCA
1 AAGCTAG-TTAAATCGAACACTTACTGCCA
84004783 AAGCT
1 AAGCT
84004788 TCCAATTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCGAACACTTACTGCCA
Found at i:84007154 original size:41 final size:41
Alignment explanation
Indices: 84007088--84007167 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 41
84007078 TACACAGGTT
84007088 TTCACATGGCCTGGTACACGCCCGTGTGCCT-GACCCGTGTCC
1 TTCACATGGCCTGGTACACGCCCGTGT-CCTAG-CCCGTGTCC
84007130 TTCACATGGCCAT-G-ACACGCCCGTGTCCTAGCCCGTGT
1 TTCACATGGCC-TGGTACACGCCCGTGTCCTAGCCCGTGT
84007168 GCAAAAACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
40 10 0.28
41 13 0.36
42 12 0.33
43 1 0.03
ACGTcount: A:0.14, C:0.38, G:0.25, T:0.24
Consensus pattern (41 bp):
TTCACATGGCCTGGTACACGCCCGTGTCCTAGCCCGTGTCC
Found at i:84008181 original size:47 final size:48
Alignment explanation
Indices: 84008107--84008378 Score: 219
Period size: 46 Copynumber: 5.8 Consensus size: 48
84008097 GGGGTGAGGT
* *
84008107 GTCGATGCCATGTCCTATACATAGTCTTACACTAGCTCAT-ATCTC-AA
1 GTCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCATCATCTCGAA
* *
84008154 GTTGATGCCATGTCCCAGACATGGTCTTACACT-GACT-ATCATCTCGTA
1 GTCGATGCCATGTCCCAGACAT-GTCTTACACTAG-CTCATCATCTCGAA
* *
84008202 GTCGATG-CATGTCCCAGACATGTCTTACACTGGCT--TCCATTTCGAA
1 GTCGATGCCATGTCCCAGACATGTCTTACACTAGCTCAT-CATCTCGAA
* * * *
84008248 GTCAATG-CATGTCCCAGACATGTCTTACACTAGCAC-TCGTCTCGAT
1 GTCGATGCCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCGAA
* * * * **
84008294 G-CTGATGCCATGTCCCACACATGGTCTAACACTGGCTC-TCATAAT-GTG
1 GTC-GATGCCATGTCCCAGACAT-GTCTTACACTAGCTCATCAT-CTCGAA
* * *
84008342 GCCAATG-CATGTCCCAGATATGTCTTACACTAGCTCA
1 GTCGATGCCATGTCCCAGACATGTCTTACACTAGCTCA
84008379 CATTAACCCA
Statistics
Matches: 185, Mismatches: 28, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
45 2 0.01
46 77 0.42
47 77 0.42
48 27 0.15
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCGAA
Found at i:84017822 original size:21 final size:22
Alignment explanation
Indices: 84017792--84017832 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
84017782 AGATTCCCAA
84017792 AAATCAAAAATCAAAA-TAAAAT
1 AAATCAAAAAT-AAAACTAAAAT
84017814 AAAT-AAAAATAAAACTAAA
1 AAATCAAAAATAAAACTAAA
84017833 TACTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 10 0.56
22 4 0.22
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (22 bp):
AAATCAAAAATAAAACTAAAAT
Found at i:84019860 original size:48 final size:48
Alignment explanation
Indices: 84019807--84019900 Score: 188
Period size: 48 Copynumber: 2.0 Consensus size: 48
84019797 ACCTTTCACA
84019807 ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
1 ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
84019855 ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAG
1 ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAG
84019901 NNNNNNNNNN
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.36
Consensus pattern (48 bp):
ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
Found at i:84030044 original size:28 final size:28
Alignment explanation
Indices: 84030012--84030070 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
84030002 TTCATCCTGA
84030012 ATGGATTTATTCACTTGTGACATTCATG
1 ATGGATTTATTCACTTGTGACATTCATG
*
84030040 ATGGATTTATTCGCTTGTGACATTCATG
1 ATGGATTTATTCACTTGTGACATTCATG
84030068 ATG
1 ATG
84030071 TGACTTATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.42
Consensus pattern (28 bp):
ATGGATTTATTCACTTGTGACATTCATG
Found at i:84034779 original size:28 final size:28
Alignment explanation
Indices: 84034747--84034805 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
84034737 TTCATCCTGA
84034747 ATGGATTTATTCACTTGTGACATTCATG
1 ATGGATTTATTCACTTGTGACATTCATG
*
84034775 ATGGATTTATTCGCTTGTGACATTCATG
1 ATGGATTTATTCACTTGTGACATTCATG
84034803 ATG
1 ATG
84034806 TGACTTATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.42
Consensus pattern (28 bp):
ATGGATTTATTCACTTGTGACATTCATG
Found at i:84037422 original size:23 final size:25
Alignment explanation
Indices: 84037396--84037445 Score: 77
Period size: 23 Copynumber: 2.0 Consensus size: 25
84037386 TCAATATTTT
84037396 TATAATTAAA-ATATTAATA-AATA
1 TATAATTAAATATATTAATATAATA
84037419 TATAATTAAATTATATTAATATAATA
1 TATAATTAAA-TATATTAATATAATA
84037445 T
1 T
84037446 TTTTATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 10 0.42
25 9 0.38
26 5 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TATAATTAAATATATTAATATAATA
Found at i:84043917 original size:12 final size:13
Alignment explanation
Indices: 84043897--84043934 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
84043887 TGTATTTGCT
84043897 AGAGAAGAAGAAA
1 AGAGAAGAAGAAA
*
84043910 AG-GAAGAAG-GA
1 AGAGAAGAAGAAA
84043921 AGAGAAGAAGAAA
1 AGAGAAGAAGAAA
84043934 A
1 A
84043935 CTAGGATGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
11 3 0.14
12 14 0.67
13 4 0.19
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (13 bp):
AGAGAAGAAGAAA
Found at i:84047919 original size:19 final size:21
Alignment explanation
Indices: 84047895--84047936 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
84047885 TGCCTAGTTA
84047895 CATCTC-ACGAACTCGG-ACT
1 CATCTCAACGAACTCGGAACT
*
84047914 CATCTCAACGAGCTCGGAACT
1 CATCTCAACGAACTCGGAACT
84047935 CA
1 CA
84047937 AATATCTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 9 0.45
21 5 0.25
ACGTcount: A:0.29, C:0.36, G:0.17, T:0.19
Consensus pattern (21 bp):
CATCTCAACGAACTCGGAACT
Found at i:84075171 original size:17 final size:18
Alignment explanation
Indices: 84075149--84075182 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84075139 TTTGAGCCAA
84075149 GTGGGC-CACACGGGCAT
1 GTGGGCTCACACGGGCAT
*
84075166 GTGGGCTCACATGGGCA
1 GTGGGCTCACACGGGCA
84075183 GATCACATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.18, C:0.26, G:0.41, T:0.15
Consensus pattern (18 bp):
GTGGGCTCACACGGGCAT
Found at i:84086928 original size:20 final size:20
Alignment explanation
Indices: 84086861--84086950 Score: 60
Period size: 20 Copynumber: 4.5 Consensus size: 20
84086851 CGTATAAACT
84086861 GTAATTCATTCA-TATAACCA
1 GTAATTCA-TCAGTATAACCA
* * *
84086881 GTAGTTCATCCGTATAAGCA
1 GTAATTCATCAGTATAACCA
* *
84086901 ATAGTTCATCAGTAATAA-CA
1 GTAATTCATCAGT-ATAACCA
* * *
84086921 GTAATTCAACCGTATTAA-TA
1 GTAATTCATCAGTA-TAACCA
84086941 GTAATTCATC
1 GTAATTCATC
84086951 CATTAATACT
Statistics
Matches: 56, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
19 3 0.05
20 49 0.88
21 4 0.07
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (20 bp):
GTAATTCATCAGTATAACCA
Found at i:84086957 original size:18 final size:19
Alignment explanation
Indices: 84086920--84086958 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
84086910 CAGTAATAAC
84086920 AGTAATTCAACCGTATTAAT
1 AGTAATTCAACCG-ATTAAT
*
84086940 AGTAATTCATCC-ATTAAT
1 AGTAATTCAACCGATTAAT
84086958 A
1 A
84086959 CTATACCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (19 bp):
AGTAATTCAACCGATTAAT
Found at i:84087212 original size:23 final size:24
Alignment explanation
Indices: 84087186--84087247 Score: 67
Period size: 22 Copynumber: 2.7 Consensus size: 24
84087176 AGCTCTATTA
84087186 AGTTGAAACGGTAAGCTTTAT-CG
1 AGTTGAAACGGTAAGCTTTATACG
* * *
84087209 AGTT-TATCAGTAAGC-TTATACG
1 AGTTGAAACGGTAAGCTTTATACG
*
84087231 AGCTGAAACGGTAAGCT
1 AGTTGAAACGGTAAGCT
84087248 CCATTGAGCT
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
21 4 0.14
22 13 0.45
23 12 0.41
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (24 bp):
AGTTGAAACGGTAAGCTTTATACG
Found at i:84087457 original size:36 final size:36
Alignment explanation
Indices: 84087409--84087482 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
84087399 AGGGCTCGAT
*
84087409 AACATATGCATTATATCAATAAAGCATTCATACTTC
1 AACATATACATTATATCAATAAAGCATTCATACTTC
84087445 AACATATACATTATATCAATAAAGCATTCATACTTC
1 AACATATACATTATATCAATAAAGCATTCATACTTC
84087481 AA
1 AA
84087483 GTATTTCAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.45, C:0.19, G:0.04, T:0.32
Consensus pattern (36 bp):
AACATATACATTATATCAATAAAGCATTCATACTTC
Found at i:84093489 original size:20 final size:20
Alignment explanation
Indices: 84093466--84093511 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
84093456 TAAACTGTAA
* * *
84093466 TTCATTCATATAACCAGTAG
1 TTCATCCATATAAACAATAG
*
84093486 TTCATCCGTATAAACAATAG
1 TTCATCCATATAAACAATAG
84093506 TTCATC
1 TTCATC
84093512 TAACAGTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.35
Consensus pattern (20 bp):
TTCATCCATATAAACAATAG
Found at i:84093808 original size:23 final size:22
Alignment explanation
Indices: 84093768--84093821 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
84093758 GATGATGAAT
*
84093768 AGTAAGCTCTATTAAGCTAAAAC
1 AGTAAGCTCTATCAAGCT-AAAC
* * *
84093791 AGTAAGCTCTATCGAGCTGATC
1 AGTAAGCTCTATCAAGCTAAAC
84093813 AGTAAGCTC
1 AGTAAGCTC
84093822 ATAAGAGCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (22 bp):
AGTAAGCTCTATCAAGCTAAAC
Found at i:84093829 original size:22 final size:22
Alignment explanation
Indices: 84093768--84093831 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
84093758 GATGATGAAT
* *
84093768 AGTAAGCTCTATTA-AGCTAAAAC
1 AGTAAGCTCTA-TAGAGCT-GATC
*
84093791 AGTAAGCTCTATCGAGCTGATC
1 AGTAAGCTCTATAGAGCTGATC
84093813 AGTAAGCTC-ATAAGAGCTG
1 AGTAAGCTCTAT-AGAGCTG
84093832 CGGTAAGCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 2 0.06
22 18 0.51
23 15 0.43
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (22 bp):
AGTAAGCTCTATAGAGCTGATC
Found at i:84095991 original size:18 final size:18
Alignment explanation
Indices: 84095948--84095982 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84095938 AAATCAAAAT
84095948 ATTGTGAGAGTTAAAAGC
1 ATTGTGAGAGTTAAAAGC
* *
84095966 ATGGTGAGTGTTAAAAG
1 ATTGTGAGAGTTAAAAG
84095983 TTTTGTGAGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.03, G:0.31, T:0.29
Consensus pattern (18 bp):
ATTGTGAGAGTTAAAAGC
Found at i:84096149 original size:16 final size:16
Alignment explanation
Indices: 84096128--84096195 Score: 102
Period size: 16 Copynumber: 4.2 Consensus size: 16
84096118 TTTGGTTCGC
84096128 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGA
84096144 TGTATTGGATTAGA-A
1 TGTATTGGATTAGAGA
*
84096159 GTGTATTGGATTAGAGG
1 -TGTATTGGATTAGAGA
*
84096176 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGA
84096192 TGTA
1 TGTA
84096196 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
15 1 0.02
16 48 0.98
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGA
Found at i:84096169 original size:32 final size:32
Alignment explanation
Indices: 84096128--84096195 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
84096118 TTTGGTTCGC
84096128 TGTATTGGATTAGAGATGTATTGGATTAGAAG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
* *
84096160 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
84096192 TGTA
1 TGTA
84096196 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGATGTATTGGATTAGAAG
Found at i:84096519 original size:157 final size:157
Alignment explanation
Indices: 84096325--84096634 Score: 539
Period size: 157 Copynumber: 2.0 Consensus size: 157
84096315 CCCTTAGCAT
*
84096325 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
84096390 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
84096455 TTTAATAAAATTCTTAATAATTACCAG
131 TTTAATAAAATTCTTAATAATTACCAG
* * * *
84096482 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
84096547 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
84096612 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
84096635 ATATTCTTAT
Statistics
Matches: 144, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
157 144 1.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (157 bp):
AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAG
Found at i:84096631 original size:82 final size:81
Alignment explanation
Indices: 84096388--84096637 Score: 186
Period size: 76 Copynumber: 3.1 Consensus size: 81
84096378 TATTATTATC
* * *
84096388 AATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTAT-ATTAAAATATAT
84096453 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
* * * * *
84096470 AATAATTACCAGA-AATTT-GT--T-TTGGT-AA-ATTATTATTGTT--AT-TGTTAT-TTAAAT
1 AATAA-TA--A-ATAATTTAATCATATT--TAAACATAATTATTATTAAATATATTATATTAAAA
* * * * *
84096524 TTTGATAAGATT-AT-TAA-TATG
60 TAT-ATAA-TTTAATAAAATTCTT
84096545 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATA-TTAAAATATAT
84096610 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
*
84096627 AATAATTAATA
1 AATAATAAATA
84096638 TTCTTATATG
Statistics
Matches: 121, Mismatches: 24, Indels: 46
0.63 0.13 0.24
Matches are distributed among these distances:
71 1 0.01
72 6 0.05
73 1 0.01
74 3 0.02
75 10 0.08
76 21 0.17
77 6 0.05
78 8 0.07
79 8 0.07
80 6 0.05
81 21 0.17
82 20 0.17
83 3 0.02
84 1 0.01
85 5 0.04
86 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (81 bp):
AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATATTAAAATATATA
ATTTAATAAAATTCTT
Found at i:84096708 original size:157 final size:155
Alignment explanation
Indices: 84096371--84096692 Score: 349
Period size: 157 Copynumber: 2.0 Consensus size: 155
84096361 TTAAATTTTA
* * * *
84096371 ATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * * * * ** *
84096436 TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTACCAGAAATTTGTTTTGGTAAATT
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATC
* * * * *
84096501 ATTATTGTTATTGTTATTTAAATTTTG
131 ATAATTATTATTGATATATAAA--TAG
* *
84096528 ATAAGATTATTAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * **
84096593 TTATACTTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCA
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTACT-A
84096658 AATCATAATATATTATATGATACTATAAA-AG
127 AATCATAAT-TATTAT-TGATA-TATAAATAG
84096689 ATAA
1 ATAA
84096693 TTTGAAATAA
Statistics
Matches: 137, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
157 102 0.74
159 4 0.03
160 4 0.03
161 13 0.09
162 5 0.04
163 4 0.03
164 5 0.04
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (155 bp):
ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATC
ATAATTATTATTGATATATAAATAG
Found at i:84105358 original size:6 final size:6
Alignment explanation
Indices: 84105345--84105390 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
84105335 GTGAATTGTT
*
84105345 ATTG-A ATTGAA ATTGAA ATTGAA ATTGAA ATT-AA AATGTAA ATTGA
1 ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATTG-AA ATTGA
84105391 TTGGAAAAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
5 8 0.22
6 23 0.64
7 5 0.14
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (6 bp):
ATTGAA
Found at i:84105770 original size:5 final size:5
Alignment explanation
Indices: 84105755--84105801 Score: 67
Period size: 5 Copynumber: 9.2 Consensus size: 5
84105745 AGTGGAAAAG
* *
84105755 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT GGAAT GGAAT T
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT T
84105802 ATGATTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
5 35 0.90
6 4 0.10
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (5 bp):
TGAAT
Found at i:84106274 original size:45 final size:45
Alignment explanation
Indices: 84106208--84106340 Score: 194
Period size: 45 Copynumber: 3.0 Consensus size: 45
84106198 TACTGTTACC
* *
84106208 GCTACTGCTAATGTTACCGATTTGGCACTTTGTGTGTCGAATATT
1 GCTACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATT
*
84106253 GTTACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATT
1 GCTACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATT
* * * * *
84106298 GCTACTGTTACCGTTACTGATTCAGCACTTTGTGTGTTGAATA
1 GCTACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATA
84106341 CTATTACCGT
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 79 1.00
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.40
Consensus pattern (45 bp):
GCTACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATT
Found at i:84107906 original size:29 final size:30
Alignment explanation
Indices: 84107861--84107928 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
84107851 CGGCCCAAGA
* * *
84107861 GTAAATACTTAAAATTTGAGGGATTAA-AGT
1 GTAAATA-TGAAAATTTGAAGGACTAATAGT
84107891 GTAAATATGAAAATTTGAAGGACTAATAGT
1 GTAAATATGAAAATTTGAAGGACTAATAGT
*
84107921 GCAAATAT
1 GTAAATAT
84107929 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.31
Consensus pattern (30 bp):
GTAAATATGAAAATTTGAAGGACTAATAGT
Found at i:84110521 original size:70 final size:70
Alignment explanation
Indices: 84110389--84110546 Score: 181
Period size: 70 Copynumber: 2.3 Consensus size: 70
84110379 ACTACTGTAG
* ** * * ***
84110389 CTCTTTGTGAGCAACCTGTTGCATGATTCGATCTGTTGCGATCTAGCATTTATTATGGACACAAA
1 CTCTTCGTGAGCGTCCTGTTACATGATTCGATCGGTTGCGATCTAGCATTTATTACAAACACAAA
84110454 CAAAA
66 CAAAA
* * *
84110459 CTCTTCGTGAGCGTCCTGTTACATGATTTGATCGGTTGCGGTCTAGCATTTATTCCAAACACAAA
1 CTCTTCGTGAGCGTCCTGTTACATGATTCGATCGGTTGCGATCTAGCATTTATTACAAACACAAA
**
84110524 CGCAA
66 CAAAA
* *
84110529 CTTTTCGTGAGTGTCCTG
1 CTCTTCGTGAGCGTCCTG
84110547 ATATAAGCTC
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (70 bp):
CTCTTCGTGAGCGTCCTGTTACATGATTCGATCGGTTGCGATCTAGCATTTATTACAAACACAAA
CAAAA
Found at i:84110579 original size:23 final size:23
Alignment explanation
Indices: 84110564--84110612 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
84110554 CTCTTATGAG
*
84110564 CTTCTTGACATGGCTCGCTTGAA
1 CTTCCTGACATGGCTCGCTTGAA
*
84110587 CTTCCTGACATGGCTTGCTTGAA
1 CTTCCTGACATGGCTCGCTTGAA
84110610 CTT
1 CTT
84110613 TCTGTTATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.37
Consensus pattern (23 bp):
CTTCCTGACATGGCTCGCTTGAA
Found at i:84113257 original size:269 final size:269
Alignment explanation
Indices: 84112778--84113307 Score: 988
Period size: 269 Copynumber: 2.0 Consensus size: 269
84112768 TTCTATGTTG
* *
84112778 CCTTATTTTCAAATTCTGAAACTTCTATGTGATGTATTTGGGGATACCTATGTGGTAGAATTTGG
1 CCTTATTTTCAAATTCTGAAACTTCTATGTGATGTATTCGGGGATACCTACGTGGTAGAATTTGG
*
84112843 TTATCCACCATTGTGGTAGGATCTGGGTAAGTTATGAGATTTCTTCGATAGATAATTCTGTAATA
66 TTATCCACCATTGTGGTAAGATCTGGGTAAGTTATGAGATTTCTTCGATAGATAATTCTGTAATA
* *
84112908 ACGATCTGATACGTCTGAAGTTAACTTGGTTTGGTTAGTCTTGTGATGAAATTGAGTAAGTCTTA
131 ACGATCTGATACGTCTGAAGTTAACTTGGTTTGGTTAGTCTTGTGATGAAATCGAATAAGTCTTA
*
84112973 AGGGATGTTTCCTGAAAGTAAGTATGTATCTATATTTCTAAAGAGCCATAGTAGTTTGCCAATAT
196 AGGGATGTTTCCTGAAAGTAAGTATGTATCTATAGTTCTAAAGAGCCATAGTAGTTTGCCAATAT
84113038 ACTATATTA
261 ACTATATTA
84113047 CCTTATTTTCAAATTCTGAAACTTCTATGTGATGTATTCGGGGATACCTACGTGGTAGAATTTGG
1 CCTTATTTTCAAATTCTGAAACTTCTATGTGATGTATTCGGGGATACCTACGTGGTAGAATTTGG
84113112 TTATCCACCATTGTGGTAAGATCTGGGTAAGTTATGAGATTTCTTCGATAGATAATTCTGTAATA
66 TTATCCACCATTGTGGTAAGATCTGGGTAAGTTATGAGATTTCTTCGATAGATAATTCTGTAATA
*
84113177 AGGATCTGATACGTCTGAAGTTAACTTGGTTTGGTTAGTCTTGTGATGAAATCGAATAAGTCTTA
131 ACGATCTGATACGTCTGAAGTTAACTTGGTTTGGTTAGTCTTGTGATGAAATCGAATAAGTCTTA
*
84113242 AGGGATGTTTCCTGAAAGTATGTATGTATCTATAGTTCTAAAGAGCCATAGTAGTTTGCCAATAT
196 AGGGATGTTTCCTGAAAGTAAGTATGTATCTATAGTTCTAAAGAGCCATAGTAGTTTGCCAATAT
84113307 A
261 A
84113308 AGAAATAGGT
Statistics
Matches: 253, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
269 253 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (269 bp):
CCTTATTTTCAAATTCTGAAACTTCTATGTGATGTATTCGGGGATACCTACGTGGTAGAATTTGG
TTATCCACCATTGTGGTAAGATCTGGGTAAGTTATGAGATTTCTTCGATAGATAATTCTGTAATA
ACGATCTGATACGTCTGAAGTTAACTTGGTTTGGTTAGTCTTGTGATGAAATCGAATAAGTCTTA
AGGGATGTTTCCTGAAAGTAAGTATGTATCTATAGTTCTAAAGAGCCATAGTAGTTTGCCAATAT
ACTATATTA
Found at i:84115146 original size:28 final size:28
Alignment explanation
Indices: 84115105--84115159 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
84115095 ATGCCGTTGA
* *
84115105 ATACTCAATGTCTCACACATTAAGTGCC
1 ATACTCAATATCTCACACACTAAGTGCC
*
84115133 ATACTCAATATCTCGCACACTAAGTGC
1 ATACTCAATATCTCACACACTAAGTGC
84115160 TGTACGTAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.27
Consensus pattern (28 bp):
ATACTCAATATCTCACACACTAAGTGCC
Found at i:84115248 original size:40 final size:41
Alignment explanation
Indices: 84115145--84115279 Score: 134
Period size: 40 Copynumber: 3.4 Consensus size: 41
84115135 ACTCAATATC
* ** * *
84115145 TCGCACACTAAGTGCTGTACGTAGCC-GAAGCTATCTCAAA
1 TCGCACACTAAGTGCTATATATAGCCAGAAGCTATGTCGAA
* * * *
84115185 TCTCACACTAAGCGCTATTTATAG-TAGAAGCTATGTCGAA
1 TCGCACACTAAGTGCTATATATAGCCAGAAGCTATGTCGAA
* *
84115225 TCGCACACTAAGTG-TCATATATAGCCAG-AGCTATGTTGTA
1 TCGCACACTAAGTGCT-ATATATAGCCAGAAGCTATGTCGAA
84115265 TCGCACACTAAGTGC
1 TCGCACACTAAGTGC
84115280 CACAAATAAT
Statistics
Matches: 76, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
39 1 0.01
40 73 0.96
41 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (41 bp):
TCGCACACTAAGTGCTATATATAGCCAGAAGCTATGTCGAA
Found at i:84122681 original size:40 final size:40
Alignment explanation
Indices: 84122612--84122706 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
84122602 ATCTCAAATT
* *
84122612 GCACACTAAATGCCATATATAGCCGAAGCTATGTCGAATC
1 GCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATC
* * * * *
84122652 TCACATTAAGTGCCATATATAGTCAAAGCTATGTTGTATC
1 GCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATC
84122692 GCACACTAAGTGCCA
1 GCACACTAAGTGCCA
84122707 CAAATAATCG
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATC
Found at i:84125301 original size:30 final size:30
Alignment explanation
Indices: 84125265--84125324 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
84125255 GGCTTTTGCT
84125265 GAAACTCGTTTTCTACGCGATCAGAGTATA
1 GAAACTCGTTTTCTACGCGATCAGAGTATA
*
84125295 GAAACTCGTTTTCTACGTGATCAGAGTATA
1 GAAACTCGTTTTCTACGCGATCAGAGTATA
84125325 CACCTAGTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (30 bp):
GAAACTCGTTTTCTACGCGATCAGAGTATA
Found at i:84132256 original size:28 final size:28
Alignment explanation
Indices: 84132199--84132434 Score: 388
Period size: 28 Copynumber: 8.5 Consensus size: 28
84132189 TAAATTGTGC
84132199 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84132226 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84132254 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
84132282 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84132310 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
84132337 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84132365 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
84132393 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84132420 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84132435 GACTTAATAT
Statistics
Matches: 200, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
27 66 0.33
28 134 0.67
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:84132342 original size:83 final size:83
Alignment explanation
Indices: 84132199--84132434 Score: 393
Period size: 83 Copynumber: 2.8 Consensus size: 83
84132189 TAAATTGTGC
*
84132199 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGA-ATTGATTATGTAGCACTAAG
*
84132263 TGTGCGAGTTTGATTATGT
65 TGTGCGAGTTTGACTATGT
*
84132282 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGATTATGTAGCACTAAGT
84132347 GTGCGAGTTTGACTATGT
66 GTGCGAGTTTGACTATGT
* * * *
84132365 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGATTATGTAGCACTAAGT
84132430 GTGCG
66 GTGCG
84132435 GACTTAATAT
Statistics
Matches: 144, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
83 118 0.82
84 26 0.18
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (83 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGATTATGTAGCACTAAGT
GTGCGAGTTTGACTATGT
Found at i:84132393 original size:111 final size:110
Alignment explanation
Indices: 84132199--84132434 Score: 418
Period size: 111 Copynumber: 2.1 Consensus size: 110
84132189 TAAATTGTGC
* *
84132199 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
84132264 GTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
66 GTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAG-TTGACTATAT
84132310 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
84132375 GTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
66 GTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATAT
*
84132420 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84132435 GACTTAATAT
Statistics
Matches: 120, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
110 22 0.18
111 98 0.82
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (110 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATAT
Found at i:84135037 original size:38 final size:40
Alignment explanation
Indices: 84134986--84135078 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
84134976 ATCTCTGTCT
* * *
84134986 AACCCAACACACCATGTA-GAG-ATAGAATCGACCCACCC
1 AACCCTACACACCAAGTATGAGAATAGAATCAACCCACCC
* * *
84135024 AACCCTACACACCAAGTATGGGAATATAATCAACCCATCC
1 AACCCTACACACCAAGTATGAGAATAGAATCAACCCACCC
84135064 AACCCTACACACCAA
1 AACCCTACACACCAA
84135079 AAGGTACCGT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 16 0.34
39 2 0.04
40 29 0.62
ACGTcount: A:0.41, C:0.37, G:0.10, T:0.13
Consensus pattern (40 bp):
AACCCTACACACCAAGTATGAGAATAGAATCAACCCACCC
Found at i:84136130 original size:21 final size:22
Alignment explanation
Indices: 84136093--84136134 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
84136083 GCTTATCGAA
*
84136093 AAAGAAGAAAAACGAAGGGAAG
1 AAAGAAGAAAAAAGAAGGGAAG
84136115 AAAGAA-AAAAAAGAAGGGAA
1 AAAGAAGAAAAAAGAAGGGAA
84136135 TTTTCGGCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.69, C:0.02, G:0.29, T:0.00
Consensus pattern (22 bp):
AAAGAAGAAAAAAGAAGGGAAG
Found at i:84150924 original size:26 final size:24
Alignment explanation
Indices: 84150882--84150933 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 24
84150872 TAGAATGAAC
84150882 TAATAAAGAAATAAAATACAATAAAA
1 TAATAAAGAAATAAAATA-AA-AAAA
84150908 TAATAAATGAAAT-AAATAAAAAAA
1 TAATAAA-GAAATAAAATAAAAAAA
84150932 TA
1 TA
84150934 GGGAAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 6 0.24
25 2 0.08
26 12 0.48
27 5 0.20
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (24 bp):
TAATAAAGAAATAAAATAAAAAAA
Found at i:84150927 original size:21 final size:22
Alignment explanation
Indices: 84150890--84150933 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
84150880 ACTAATAAAG
*
84150890 AAATAAAATACAATAAAATAAT
1 AAATAAAATACAATAAAAAAAT
*
84150912 AAATGAAATA-AATAAAAAAAT
1 AAATAAAATACAATAAAAAAAT
84150933 A
1 A
84150934 GGGAAAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.20
Consensus pattern (22 bp):
AAATAAAATACAATAAAAAAAT
Found at i:84153710 original size:40 final size:38
Alignment explanation
Indices: 84153521--84153710 Score: 218
Period size: 38 Copynumber: 4.9 Consensus size: 38
84153511 GAATCCAGTC
* * **
84153521 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAAATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
*
84153561 ACCAGCACAAAGCCTACGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
84153599 ACCAGCACGAAGCCTGCCGGATTTAACCCAGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
84153637 ACTAGTACAAAGGCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* *
84153675 ACCAGCACATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACAAAGCCTGCGGG-ATTTAA-CCCGGATA
84153711 CACATAAAAT
Statistics
Matches: 126, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
38 89 0.71
39 10 0.08
40 27 0.21
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.21
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:84156465 original size:37 final size:37
Alignment explanation
Indices: 84156441--84156513 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
84156431 TTAAATAGGT
84156441 AAATTGGTTATTAAAGGTTAATTAAATAAAATAAAAA
1 AAATTGGTTATTAAAGGTTAATTAAATAAAATAAAAA
84156478 AAATTGGTTATTAAAGGTTAATTAAATAAAATAAAA
1 AAATTGGTTATTAAAGGTTAATTAAATAAAATAAAA
84156514 CATTTTAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (37 bp):
AAATTGGTTATTAAAGGTTAATTAAATAAAATAAAAA
Found at i:84163175 original size:48 final size:47
Alignment explanation
Indices: 84163070--84163234 Score: 199
Period size: 48 Copynumber: 3.5 Consensus size: 47
84163060 TATGTGTCCT
* * * * *
84163070 AGTGTAAGACATGTTTGGGACATTCATCGGCCAC-A-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-AAAGCC
*
84163116 AGTGTAAGACATGTCTGGGATATGCATCGGCCTCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-AAGCC
* * *
84163164 AGTGTAAGACATGTCTAGGACATGCATCGGCCTGGAGATATAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAGCC
* *
84163211 AGTGTAAGACCTGTCTAGGACATG
1 AGTGTAAGACATGTCTGGGACATG
84163235 GCGTCAGCTT
Statistics
Matches: 105, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
46 30 0.29
47 29 0.28
48 46 0.44
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAGCC
Found at i:84163317 original size:49 final size:49
Alignment explanation
Indices: 84163257--84163384 Score: 152
Period size: 49 Copynumber: 2.6 Consensus size: 49
84163247 TGTGTTTCAA
*
84163257 TGTAAGACCTGTCTGGGACATGGCATCGACACCAG-CAGATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGAC-CCAGACAGATGAAAGCCAG
* * ** * * *
84163306 TGTAAGGCCTGTTTGGGACATGGCATC-AGCCTTGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGA-CCCAGACAGATGAAAGCCAG
84163355 TGTAAGACCTGTCTGGGACATGGCATCGAC
1 TGTAAGACCTGTCTGGGACATGGCATCGAC
84163385 TTTGATGTGC
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
48 3 0.05
49 62 0.94
50 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACCCAGACAGATGAAAGCCAG
Found at i:84163390 original size:49 final size:49
Alignment explanation
Indices: 84163106--84163425 Score: 218
Period size: 48 Copynumber: 6.7 Consensus size: 49
84163096 TCGGCCACAT
* * * * *
84163106 TATGAGAGCCAGTGTAAGACATGTCTGGGATAT-GCATCGGCCTCGAGA
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGAGA
* * * *
84163154 TAT-ACAAGCCAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTGGAGA
1 TATGA-AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGAGA
* * * *
84163202 TAT-AAAGCTAGTGTAAGACCTGTCTAGGACATGGCGTC-AGCTT--G-
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGAGA
***** * *
84163246 T-TGTGTTTCAATGTAAGACCTGTCTGGGACATGGCATCGACAC--CAGCA
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTTGAG-A
* * * * *
84163294 GATGAGAGCCAGTGTAAGGCCTGTTTGGGACATGGCATC-AGCCTTGATA
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTTGAGA
* *
84163343 TATGAAAGTCAGTGTAAGACCTGTCTGGGACATGGCATCGA-CTT-TGA
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGAGA
* ** *
84163390 TGTGCTAGCTAGTGTAAGACCATGTCTGGGACATGG
1 TATGAAAGCCAGTGTAAGACC-TGTCTGGGACATGG
84163426 TGTCGGCATC
Statistics
Matches: 215, Mismatches: 42, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
43 1 0.00
44 27 0.13
45 2 0.01
46 2 0.01
47 46 0.21
48 69 0.32
49 66 0.31
50 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGAGA
Found at i:84172630 original size:48 final size:48
Alignment explanation
Indices: 84172578--84172675 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
84172568 TATAGAGACT
84172578 TAGTTTTTATGATAGATGTTGTTATGATCAGCCAAATGTATTTACTTA
1 TAGTTTTTATGATAGATGTTGTTATGATCAGCCAAATGTATTTACTTA
84172626 TAGTTTTTATGATAGATGTTGTTATGATCAGCCAAATGTATTTACTTA
1 TAGTTTTTATGATAGATGTTGTTATGATCAGCCAAATGTATTTACTTA
84172674 TA
1 TA
84172676 TTGATTCATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (48 bp):
TAGTTTTTATGATAGATGTTGTTATGATCAGCCAAATGTATTTACTTA
Found at i:84176038 original size:905 final size:905
Alignment explanation
Indices: 84173556--84176028 Score: 4402
Period size: 905 Copynumber: 2.7 Consensus size: 905
84173546 ACTAACCCAG
* *
84173556 TGTAACACCCCGAACCCGAGACCGTCACCGGAGTCGAACACGAGGTGTT---A-AC---AAA---
1 TGTAACACCCCGAACCCGAGACTGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCC
* * * *
84173611 CTT-TTAAAAAT-TTT-CCAGACACTGCCAATCTGTGTAATAGTCGCTTTAAAAATAATATCTTG
66 CTTATAAAAAATATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCTTG
* * * * * *
84173673 AGTTTCATAACTCGAAAATCAGTTTTGTGATTTTTCCCTGAAAGTAGACTCACATGCCCATCTAC
131 AGTTTCACAACTTGAAAATCAGTTTCGTGATTTTTCCCTGAAACTAGACTCATATTCCCATCTAC
84173738 ATATTTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGT
196 ATA-TTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGT
* *
84173803 TACAGGGATCGACTACCCTGACCTTTGTGCATTACGACTTGGATATCTCCTTGTACAGAGCTCCA
260 TACAGGGATCGACTACCCTGACCTTTGCGCATTACGACTTGGATATCTCCTTGTACAGGGCTCCA
84173868 ATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGTATGA
325 ATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGTATGA
84173933 CTCCTAATTATCTCTGGTTAATTTATGGTAAATTTTCAAATTCGAAACAGGAGATCCAGAAACCG
390 CTCCTAATTATCTCTGGTTAATTTATGGTAAATTTTCAAATTCGAAACAGGAGATCCAGAAACCG
84173998 TTCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGTTTATATGATTGTTTCGTTA
455 TTCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGTTTATATGATTGTTTCGTTA
84174063 CTTTCATATGAAAATAGATTAATCAAGGTTCGATTACATAATTTATTCACTATTTAATTCCATTC
520 CTTTCATATGAAAATAGATTAATCAAGGTTCGATTACATAATTTATTCACTATTTAATTCCATTC
84174128 CTACAAATTTTTGTGATTTTTCAAATCCACACCACTGCTGCTGTCAGCATCTGTTTTCAAGGTAA
585 CTACAAATTTTTGTGATTTTTCAAATCCACACCACTGCTGCTGTCAGCATCTGTTTTCAAGGTAA
84174193 ACTTTACCTATTTCGTGGTTACCATGGACCAACTAGGGTTTTGTCATACATAGGTCCACATATGA
650 ACTTTACCTATTTCGTGGTTACCATGGACCAACTAGGGTTTTGTCATACATAGGTCCACATATGA
84174258 TCATATTTAGCCATTCCAATGGCTGATCATTTGCCCAACACTTCCATTCCAAACCATAGTCACAT
715 TCATATTTAGCCATTCCAATGGCTGATCATTTGCCCAACACTTCCATTCCAAACCATAGTCACAT
84174323 CATGAAACCATATATACATACATAAACACAAATGGTCTAATGCCATACTCCACTTCTACAAGCCA
780 CATGAAACCATATATACATACATAAACACAAATGGTCTAATGCCATACTCCACTTCTACAAGCCA
84174388 TTTTCGCATGGCTGTACACACATACATCACAAAAAGTGCTTAAAACAACAAGGGGTAGTCC
845 TTTTCGCATGGCTGTACACACATACATCACAAAAAGTGCTTAAAACAACAAGGGGTAGTCC
84174449 TGTAACACCCCGAACCCGAGACTGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCC
1 TGTAACACCCCGAACCCGAGACTGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCC
84174514 CTTATAAAAAATATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCTTG
66 CTTATAAAAAATATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCTTG
84174579 AGTTTCACAACTTGAAAATCAGTTTCGTGATTTTTCCCTGAAACTAGACTCATATTCCCATCTAC
131 AGTTTCACAACTTGAAAATCAGTTTCGTGATTTTTCCCTGAAACTAGACTCATATTCCCATCTAC
84174644 ATATTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTT
196 ATATTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTT
84174709 ACAGGGATCGACTACCCTGACCTTTGCGCATTACGACTTGGATATCTCCTTGTACAGGGCTCCAA
261 ACAGGGATCGACTACCCTGACCTTTGCGCATTACGACTTGGATATCTCCTTGTACAGGGCTCCAA
84174774 TACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGTATGAC
326 TACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGTATGAC
84174839 TCCTAATTATCTCTGGTTAATTTATGGTAAATTTTCAAATTCGAAACAGGAGATCCAGAAACCGT
391 TCCTAATTATCTCTGGTTAATTTATGGTAAATTTTCAAATTCGAAACAGGAGATCCAGAAACCGT
84174904 TCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGTTTATATGATTGTTTCGTTAC
456 TCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGTTTATATGATTGTTTCGTTAC
84174969 TTTCATATGAAAATAGATTAATCAAGGTTCGATTACATAATTTATTCACTATTTAATTCCATTCC
521 TTTCATATGAAAATAGATTAATCAAGGTTCGATTACATAATTTATTCACTATTTAATTCCATTCC
84175034 TACAAATTTTTGTGATTTTTCAAATCCACACCACTGCTGCTGTCAGCATCTGTTTTCAAGGTAAA
586 TACAAATTTTTGTGATTTTTCAAATCCACACCACTGCTGCTGTCAGCATCTGTTTTCAAGGTAAA
84175099 CTTTACCTATTTCGTGGTTACCATGGACCAACTAGGGTTTTGTCATACATAGGTCCACATATGAT
651 CTTTACCTATTTCGTGGTTACCATGGACCAACTAGGGTTTTGTCATACATAGGTCCACATATGAT
84175164 CATATTTAGCCATTCCAATGGCTGATCATTTGCCCAACACTTCCATTCCAAACCATAGTCACATC
716 CATATTTAGCCATTCCAATGGCTGATCATTTGCCCAACACTTCCATTCCAAACCATAGTCACATC
84175229 ATGAAACCATATATACATACATAAACACAAATGGTCTAATGCCATACTCCACTTCTACAAGCCAT
781 ATGAAACCATATATACATACATAAACACAAATGGTCTAATGCCATACTCCACTTCTACAAGCCAT
84175294 TTTCGCATGGCTGTACACACATACATCACAAAAAGTGCTTAAAACAACAAGGGGTAGTCC
846 TTTCGCATGGCTGTACACACATACATCACAAAAAGTGCTTAAAACAACAAGGGGTAGTCC
84175354 TGTAACACCCCGAACCCGAGACTGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCC
1 TGTAACACCCCGAACCCGAGACTGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCC
84175419 CTTATAAAAAATATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCTTG
66 CTTATAAAAAATATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCTTG
84175484 AGTTTCACAACTTGAAAATCAGTTTCGTGATTTTTCCCTGAAACTAGACTCATATTCCCATCTAC
131 AGTTTCACAACTTGAAAATCAGTTTCGTGATTTTTCCCTGAAACTAGACTCATATTCCCATCTAC
84175549 ATATTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTT
196 ATATTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTT
* *
84175614 ACAGGGATCAACTACCCTGACCTTTGCGCATTACGACTTGGATATCTCCTTGGACAGGGCTCCAA
261 ACAGGGATCGACTACCCTGACCTTTGCGCATTACGACTTGGATATCTCCTTGTACAGGGCTCCAA
* *
84175679 TACTGATGCCGTTTGTCTCTATAGAAACTAGACGCAGAGAGGAATCTATACATATATGGTATGAC
326 TACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGTATGAC
** * * * *
84175744 TCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAACAGG-GAATCCAGAAACCG
391 TCCTAATTATCTCTGGTTAATTTATGGTAAATTTTCAAATTCGAAACAGGAG-ATCCAGAAACCG
* * * * * ***
84175808 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACACACTGTCCGTATGATTGTTTCGTTA
455 TTCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGTTTATATGATTGTTTCGTTA
* * * * *
84175873 CTTTCCTATGAAAGTAGATTCATCAAGGTTTGTTTACATAATTTATTCACTATTTAATTCCATTC
520 CTTTCATATGAAAATAGATTAATCAAGGTTCGATTACATAATTTATTCACTATTTAATTCCATTC
* * * *
84175938 CTAC-TATTTTTAGTGATTTTTCAAATCTACATCACTGCTGCTGTCAGCATCTGCCTTT-AAGGT
585 CTACAAATTTTT-GTGATTTTTCAAATCCACACCACTGCTGCTGTCAGCATCTG-TTTTCAAGGT
* * *
84176001 AGACTTTACCTATTTCATGGTTTCCATG
648 AAACTTTACCTATTTCGTGGTTACCATG
84176029 ATTCAACTAG
Statistics
Matches: 1520, Mismatches: 44, Indels: 20
0.96 0.03 0.01
Matches are distributed among these distances:
893 47 0.03
896 1 0.00
897 2 0.00
900 3 0.00
903 3 0.00
904 14 0.01
905 1340 0.88
906 110 0.07
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (905 bp):
TGTAACACCCCGAACCCGAGACTGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCC
CTTATAAAAAATATTTCCCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCTTG
AGTTTCACAACTTGAAAATCAGTTTCGTGATTTTTCCCTGAAACTAGACTCATATTCCCATCTAC
ATATTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTT
ACAGGGATCGACTACCCTGACCTTTGCGCATTACGACTTGGATATCTCCTTGTACAGGGCTCCAA
TACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTATACATATATGGTATGAC
TCCTAATTATCTCTGGTTAATTTATGGTAAATTTTCAAATTCGAAACAGGAGATCCAGAAACCGT
TCTGGCCCTGTTTCACGAGAACTTTAATATCTCTTAATATACTGTTTATATGATTGTTTCGTTAC
TTTCATATGAAAATAGATTAATCAAGGTTCGATTACATAATTTATTCACTATTTAATTCCATTCC
TACAAATTTTTGTGATTTTTCAAATCCACACCACTGCTGCTGTCAGCATCTGTTTTCAAGGTAAA
CTTTACCTATTTCGTGGTTACCATGGACCAACTAGGGTTTTGTCATACATAGGTCCACATATGAT
CATATTTAGCCATTCCAATGGCTGATCATTTGCCCAACACTTCCATTCCAAACCATAGTCACATC
ATGAAACCATATATACATACATAAACACAAATGGTCTAATGCCATACTCCACTTCTACAAGCCAT
TTTCGCATGGCTGTACACACATACATCACAAAAAGTGCTTAAAACAACAAGGGGTAGTCC
Found at i:84176821 original size:79 final size:79
Alignment explanation
Indices: 84176710--84176932 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 79
84176700 GCTCCTCGTT
* * *
84176710 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCG
* *
84176774 GATTTAGTAACTCGCA
64 GAATTAGTAACTCACA
84176790 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
84176853 AATTAGTATCTCACA
65 AATTAGTAACTCACA
* * * *
84176868 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCC
84176930 GGA
63 GGA
84176933 CATCATTCAA
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 45 0.36
79 57 0.45
80 23 0.18
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCACA
Found at i:84176827 original size:39 final size:40
Alignment explanation
Indices: 84176710--84176932 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
84176700 GCTCCTCGTT
* *
84176710 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
84176750 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
84176790 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
84176829 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
84176868 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
84176909 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84176933 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.54
40 64 0.39
41 10 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:84194710 original size:48 final size:46
Alignment explanation
Indices: 84194603--84194818 Score: 231
Period size: 46 Copynumber: 4.6 Consensus size: 46
84194593 TATGTGTGCT
* *
84194603 AGTGTAAGACATGTCTGGGACATGCATCGGCCAT-A-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TGAGATAT-AAAGCC
*
84194649 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-GAGATATA-AAGCC
* ** * * *
84194697 AGTGTAAGACATGTTTGGGACATGCATCGGAATTGAGACA-AGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CCTGAGATATAAAGCC
* * *
84194743 AGTGTAAGACATGTCTGGGACATGCATCGGTCTGGAGATACAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-GAGATATAAAGCC
*
84194790 AGTGTAAGACCTGTCTGGGACATGGCATC
1 AGTGTAAGACATGTCTGGGACAT-GCATC
84194819 AACTTGTTGT
Statistics
Matches: 146, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
45 2 0.01
46 68 0.47
47 30 0.21
48 45 0.31
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTGAGATATAAAGCC
Found at i:84194752 original size:94 final size:92
Alignment explanation
Indices: 84194603--84194818 Score: 276
Period size: 94 Copynumber: 2.3 Consensus size: 92
84194593 TATGTGTGCT
84194603 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCCAGTGTAAGACATGTCTAGG
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CATATTATGAGAGCCAGTGTAAGACATGTCTAGG
*
84194668 ACATGCATCGGCCTCGAGATATACAAGCC
65 ACATGCATCGGCCTCGAGATACA-AAGCC
* *
84194697 AGTGTAAGACATGTTTGGGACATGCATCGG-A-ATTGA-GACAAGAGCTAGTGTAAGACATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATATT-ATG---AGAGCCAGTGTAAGACATGTCT
* * * *
84194759 GGGACATGCATCGGTCTGGAGATACAAAGCT
62 AGGACATGCATCGGCCTCGAGATACAAAGCC
*
84194790 AGTGTAAGACCTGTCTGGGACATGGCATC
1 AGTGTAAGACATGTCTGGGACAT-GCATC
84194819 AACTTGTTGT
Statistics
Matches: 108, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
91 4 0.04
92 2 0.02
93 25 0.23
94 77 0.71
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATATTATGAGAGCCAGTGTAAGACATGTCTAGGA
CATGCATCGGCCTCGAGATACAAAGCC
Found at i:84194899 original size:47 final size:48
Alignment explanation
Indices: 84194836--84194961 Score: 132
Period size: 49 Copynumber: 2.6 Consensus size: 48
84194826 TGTGTGTCAG
* *
84194836 TGTAAGGCCTGTCTGGGACATGGAATCGACAC-CG-AGATGAGAGCCAA
1 TGTAAGACCTGTCTGGGACATGGAATCGAC-CTCGAAGATGAAAGCCAA
* * * * *
84194883 TGTAAGACCTGTCTGGGACACGGTATC-AGCCTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGAATCGA-CCTCGA-AGATGAAAGCCAA
*
84194932 TGTAAGACCTGTCTGGGACATGGCATCGAC
1 TGTAAGACCTGTCTGGGACATGGAATCGAC
84194962 TTTGATATGC
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
46 2 0.03
47 27 0.42
49 35 0.54
50 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (48 bp):
TGTAAGACCTGTCTGGGACATGGAATCGACCTCGAAGATGAAAGCCAA
Found at i:84204766 original size:25 final size:26
Alignment explanation
Indices: 84204718--84204769 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
84204708 GGATTTTGGT
*
84204718 ATATTTGCTATCTGAATCTAAAACTG
1 ATATTTGCAATCTGAATCTAAAACTG
* *
84204744 ATATTTG-AATCTGAGTCTGAAACTG
1 ATATTTGCAATCTGAATCTAAAACTG
84204769 A
1 A
84204770 GTCTATATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (26 bp):
ATATTTGCAATCTGAATCTAAAACTG
Found at i:84208760 original size:13 final size:13
Alignment explanation
Indices: 84208742--84208776 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
84208732 AAAATGACTT
*
84208742 AATTAAGCTTACC
1 AATTAAACTTACC
84208755 AATTAAACTTACC
1 AATTAAACTTACC
84208768 AATTAAACT
1 AATTAAACT
84208777 CCAAGCTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.31
Consensus pattern (13 bp):
AATTAAACTTACC
Found at i:84209041 original size:15 final size:14
Alignment explanation
Indices: 84208991--84209041 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
84208981 TCTCCCCTTT
84208991 CTTTTTCTTTCT--
1 CTTTTTCTTTCTCC
*
84209003 -TTTTTCTTTCTTC
1 CTTTTTCTTTCTCC
84209016 CTTTTTCTTTCTCC
1 CTTTTTCTTTCTCC
84209030 CTTTTTCGTTTC
1 CTTTTTC-TTTC
84209042 AACCTTCTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
11 11 0.32
14 19 0.56
15 4 0.12
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.71
Consensus pattern (14 bp):
CTTTTTCTTTCTCC
Found at i:84209047 original size:29 final size:25
Alignment explanation
Indices: 84208991--84209047 Score: 60
Period size: 25 Copynumber: 2.1 Consensus size: 25
84208981 TCTCCCCTTT
**
84208991 CTTTTTCTTTCTTTTTTCTTTCTTC
1 CTTTTTCTTTCTTTTTTCTTTCAAC
84209016 CTTTTTCTTTCTCCCTTTTTCGTTTCAAC
1 CTTTTTCTTTCT---TTTTTC-TTTCAAC
84209045 CTT
1 CTT
84209048 CTGTTTCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 12 0.46
28 6 0.23
29 8 0.31
ACGTcount: A:0.04, C:0.28, G:0.02, T:0.67
Consensus pattern (25 bp):
CTTTTTCTTTCTTTTTTCTTTCAAC
Found at i:84209060 original size:19 final size:19
Alignment explanation
Indices: 84209038--84209076 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
84209028 CCCTTTTTCG
84209038 TTTCAACCTTCTGTTTCTT
1 TTTCAACCTTCTGTTTCTT
* * *
84209057 TTTCTATCTTTTGTTTCTT
1 TTTCAACCTTCTGTTTCTT
84209076 T
1 T
84209077 CTTTCTTTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.21, G:0.05, T:0.67
Consensus pattern (19 bp):
TTTCAACCTTCTGTTTCTT
Found at i:84209107 original size:5 final size:5
Alignment explanation
Indices: 84209105--84209142 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
84209095 TTAGTTATAT
84209105 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT
84209143 ATTATTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:84209148 original size:15 final size:16
Alignment explanation
Indices: 84209099--84209148 Score: 68
Period size: 15 Copynumber: 3.1 Consensus size: 16
84209089 TATGTTTTAG
84209099 TTATATTATTATATTATA
1 TTATATTA-TATA-TATA
84209117 TTATATTATAT-TATA
1 TTATATTATATATATA
84209132 TTATATTATATAT-TA
1 TTATATTATATATATA
84209147 TT
1 TT
84209149 TAAATAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
15 19 0.61
16 1 0.03
17 3 0.10
18 8 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATATTATATATATA
Found at i:84215744 original size:13 final size:12
Alignment explanation
Indices: 84215711--84215744 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
84215701 GAAATTAAAA
*
84215711 TAATTATACCAT
1 TAATTATAACAT
84215723 TAATTATAACAT
1 TAATTATAACAT
84215735 TAATTTATAA
1 TAA-TTATAA
84215745 TAATAATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATTATAACAT
Found at i:84221794 original size:6 final size:6
Alignment explanation
Indices: 84221766--84221809 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
84221756 CATATTTGCC
*
84221766 ATCTTA ATCTGAA AT-TGA TATCTGA ATCTGA ATCTGA ATCTGA A
1 ATCTGA ATCTG-A ATCTGA -ATCTGA ATCTGA ATCTGA ATCTGA A
84221810 AATGAGTCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
5 1 0.03
6 27 0.79
7 6 0.18
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (6 bp):
ATCTGA
Found at i:84222820 original size:51 final size:51
Alignment explanation
Indices: 84222755--84222851 Score: 176
Period size: 51 Copynumber: 1.9 Consensus size: 51
84222745 ATCTAGGTAC
*
84222755 CCAATCATTTTCTAAATTAAAACTCCATAGCAATTGAATTTTAATTGGTCT
1 CCAAGCATTTTCTAAATTAAAACTCCATAGCAATTGAATTTTAATTGGTCT
*
84222806 CCAAGCATTTTCTAAATTAAAACTCCATAGCGATTGAATTTTAATT
1 CCAAGCATTTTCTAAATTAAAACTCCATAGCAATTGAATTTTAATT
84222852 AACTATTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (51 bp):
CCAAGCATTTTCTAAATTAAAACTCCATAGCAATTGAATTTTAATTGGTCT
Found at i:84229967 original size:4 final size:4
Alignment explanation
Indices: 84229958--84229982 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
84229948 AAAATACTTG
84229958 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
84229983 TATAGATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:84232707 original size:6 final size:6
Alignment explanation
Indices: 84232698--84232722 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
84232688 CCTTAATCAT
84232698 AATTAC AATTAC AATTAC AATTAC A
1 AATTAC AATTAC AATTAC AATTAC A
84232723 TAACCACACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (6 bp):
AATTAC
Found at i:84236214 original size:2 final size:2
Alignment explanation
Indices: 84236207--84237027 Score: 1561
Period size: 2 Copynumber: 409.5 Consensus size: 2
84236197 AACAGATGTA
* * *
84236207 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA CG TA
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
84236249 TG ATT TG TT TT TAA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG -TG TG TG TG T-G TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236293 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236335 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236377 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236419 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236461 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236503 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236545 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236587 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236629 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236671 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236713 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236755 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236797 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236839 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236881 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236923 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84236965 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
84237007 TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG T
84237028 ACGTATGATT
Statistics
Matches: 806, Mismatches: 11, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
2 804 1.00
3 2 0.00
ACGTcount: A:0.01, C:0.00, G:0.49, T:0.50
Consensus pattern (2 bp):
TG
Found at i:84238149 original size:46 final size:45
Alignment explanation
Indices: 84238097--84238189 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 45
84238087 AGTAAATGGG
84238097 AAAGAGTTGCTAAAGAGGGTGAATAACGAACAATACGATGTGTCA
1 AAAGAGTTGCTAAAGAGGGTGAATAACGAACAATACGATGTGTCA
84238142 NAAAGAGTTGCTAAAGAGGGTGAATAACGAACAATACGATGTGTCA
1 -AAAGAGTTGCTAAAGAGGGTGAATAACGAACAATACGATGTGTCA
84238188 AA
1 AA
84238190 CTAATTTCGT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 2 0.04
46 45 0.96
ACGTcount: A:0.43, C:0.11, G:0.26, T:0.19
Consensus pattern (45 bp):
AAAGAGTTGCTAAAGAGGGTGAATAACGAACAATACGATGTGTCA
Found at i:84241812 original size:43 final size:43
Alignment explanation
Indices: 84241765--84241878 Score: 176
Period size: 43 Copynumber: 2.7 Consensus size: 43
84241755 TGTGACTACA
* *
84241765 TGTAAGACCATGTCTGGGACATTGGCTTTGTATTGTGATTAT-G
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTATGATT-TCG
84241808 TGTAAGACCATGTCTGGGACATTGGCATTGTATTATGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTATGATTTCG
* *
84241851 TGTAAGACCCTGTCTGGGACAATGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
84241879 CAATATGTGA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
42 1 0.02
43 65 0.98
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTATGATTTCG
Found at i:84244050 original size:46 final size:46
Alignment explanation
Indices: 84243972--84244096 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 46
84243962 GGTTGAGCAT
* * * * *
84243972 CCGAAGTCGTTGAGTTGAGTCCGAGTTTACTTACGGACGTGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGACGCGAACGC
* * *
84244018 TCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGACGCGAACGC
* *
84244064 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
84244097 GGGGCGGGTT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGACGCGAACGC
Found at i:84245656 original size:17 final size:17
Alignment explanation
Indices: 84245634--84245668 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
84245624 CATATGGCCT
84245634 TGGTACACGGCCGTGTG
1 TGGTACACGGCCGTGTG
84245651 TGGTACACGGCCGTGTG
1 TGGTACACGGCCGTGTG
84245668 T
1 T
84245669 CTCCTGGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.23, G:0.40, T:0.26
Consensus pattern (17 bp):
TGGTACACGGCCGTGTG
Found at i:84249269 original size:47 final size:47
Alignment explanation
Indices: 84249212--84249473 Score: 310
Period size: 47 Copynumber: 5.6 Consensus size: 47
84249202 ATCCATAAGT
84249212 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
84249259 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
84249305 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
84249352 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
84249398 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
84249445 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
84249474 CATTCGCATC
Statistics
Matches: 181, Mismatches: 16, Indels: 36
0.78 0.07 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 2 0.01
45 4 0.02
46 58 0.32
47 87 0.48
48 4 0.02
49 2 0.01
50 8 0.04
51 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:84249294 original size:93 final size:93
Alignment explanation
Indices: 84249165--84249522 Score: 664
Period size: 93 Copynumber: 3.8 Consensus size: 93
84249155 CGCCCATAAG
* * * *
84249165 CGAACTCAGACTAAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
84249229 AACGAGTTCGGATGCCTAGTTACATTTCA
65 AACGAGTTCGGATGCCTAGTTACATTTCA
84249258 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84249323 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
84249351 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84249416 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
84249444 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84249509 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
84249523 TCAACCATCC
Statistics
Matches: 260, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
92 2 0.01
93 258 0.99
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:84249517 original size:46 final size:46
Alignment explanation
Indices: 84249158--84249519 Score: 336
Period size: 46 Copynumber: 7.8 Consensus size: 46
84249148 TGTAACCCGC
* * * *
84249158 CCATAAGCGAACTCAGACTAAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
84249204 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
84249254 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
84249297 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
84249347 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
84249390 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
84249440 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
84249483 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
84249520 TGCTCAACCA
Statistics
Matches: 259, Mismatches: 29, Indels: 56
0.75 0.08 0.16
Matches are distributed among these distances:
42 6 0.02
43 12 0.05
44 3 0.01
45 8 0.03
46 117 0.45
47 87 0.34
48 6 0.02
49 3 0.01
50 11 0.04
51 6 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:84265457 original size:26 final size:26
Alignment explanation
Indices: 84265398--84265459 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
84265388 ATTAATTGGT
* *
84265398 AAGAATTAAGCATATTTTTATTGAGA
1 AAGAATTTAGCATATCTTTATTGAGA
84265424 AAGAATTTAGCATATCTTTATTGAGA
1 AAGAATTTAGCATATCTTTATTGAGA
*
84265450 AAGCATTTAG
1 AAGAATTTAG
84265460 TCTATTATTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.40, C:0.06, G:0.16, T:0.37
Consensus pattern (26 bp):
AAGAATTTAGCATATCTTTATTGAGA
Found at i:84270533 original size:20 final size:21
Alignment explanation
Indices: 84270495--84270533 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
84270485 TAACTAAACC
* *
84270495 GAGAACTTTGGGAAGTTTCAG
1 GAGAACTTTAGGAAATTTCAG
84270516 GAGAAC-TTAGGAAATTTC
1 GAGAACTTTAGGAAATTTC
84270534 CCCATGAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.28
Consensus pattern (21 bp):
GAGAACTTTAGGAAATTTCAG
Found at i:84274241 original size:58 final size:58
Alignment explanation
Indices: 84274178--84274294 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
84274168 TTTGATATTT
84274178 AATTAATTAAATTAATAAGAGATAAGTAATAAATAAATAAATTTAATTCTTGTAGAAC
1 AATTAATTAAATTAATAAGAGATAAGTAATAAATAAATAAATTTAATTCTTGTAGAAC
84274236 AATTAATTAAATTAATAAGAGATAAGTAATAAATAAATAAATTTAATTCTTGTAGAAC
1 AATTAATTAAATTAATAAGAGATAAGTAATAAATAAATAAATTTAATTCTTGTAGAAC
84274294 A
1 A
84274295 CACAAATGAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.54, C:0.03, G:0.09, T:0.34
Consensus pattern (58 bp):
AATTAATTAAATTAATAAGAGATAAGTAATAAATAAATAAATTTAATTCTTGTAGAAC
Found at i:84278411 original size:40 final size:40
Alignment explanation
Indices: 84278359--84278439 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
84278349 ATTAAACGAT
84278359 TTATTCACTTGTGTCCTGATCCATAGAAATCCCTAAATTA
1 TTATTCACTTGTGTCCTGATCCATAGAAATCCCTAAATTA
*
84278399 TTATTCACTTGTGTCTTGATCCATAGAAATCCCTAAATTA
1 TTATTCACTTGTGTCCTGATCCATAGAAATCCCTAAATTA
84278439 T
1 T
84278440 GTTAATATCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.40
Consensus pattern (40 bp):
TTATTCACTTGTGTCCTGATCCATAGAAATCCCTAAATTA
Found at i:84285489 original size:443 final size:443
Alignment explanation
Indices: 84284663--84285730 Score: 2136
Period size: 443 Copynumber: 2.4 Consensus size: 443
84284653 TAAATACATT
84284663 TTGTATCGTAACCGAATTTCTAATATTAATGAAACTTGTTATGTCTTATGTTATTATATTCTTTT
1 TTGTATCGTAACCGAATTTCTAATATTAATGAAACTTGTTATGTCTTATGTTATTATATTCTTTT
84284728 TGTATTAAAAATCATCCGATCAGATATTTTAAAATTTAATCCAAGTATAATATTATTATTTGTGA
66 TGTATTAAAAATCATCCGATCAGATATTTTAAAATTTAATCCAAGTATAATATTATTATTTGTGA
84284793 AAATAATATTTATCATTGTTATAAAAAAATTACTAACTATAAAAATAATTTAAAAAATTATCATT
131 AAATAATATTTATCATTGTTATAAAAAAATTACTAACTATAAAAATAATTTAAAAAATTATCATT
84284858 TTATCTAATTAATAATTTAAATTGATTATATAATTCATTAAAATATTTATAATAAAATATTAGAA
196 TTATCTAATTAATAATTTAAATTGATTATATAATTCATTAAAATATTTATAATAAAATATTAGAA
84284923 GATACATTTTAATATTTTATTAAATGAATTTATAAATTCACATATTTTTAATAATTTTATAAAAA
261 GATACATTTTAATATTTTATTAAATGAATTTATAAATTCACATATTTTTAATAATTTTATAAAAA
84284988 TAAAATAATTTAAAATTTTTTTATTATATATAATTTTTAATAAAATATTCTTATAAATTATTTTT
326 TAAAATAATTTAAAATTTTTTTATTATATATAATTTTTAATAAAATATTCTTATAAATTATTTTT
84285053 TATTCTCATCTTATTGCTATAACTAAGTTTAAATCCAAGCACAGACACAACCA
391 TATTCTCATCTTATTGCTATAACTAAGTTTAAATCCAAGCACAGACACAACCA
84285106 TTGTATCGTAACCGAATTTCTAATATTAATGAAACTTGTTATGTCTTATGTTATTATATTCTTTT
1 TTGTATCGTAACCGAATTTCTAATATTAATGAAACTTGTTATGTCTTATGTTATTATATTCTTTT
84285171 TGTATTAAAAATCATCCGATCAGATATTTTAAAATTTAATCCAAGTATAATATTATTATTTGTGA
66 TGTATTAAAAATCATCCGATCAGATATTTTAAAATTTAATCCAAGTATAATATTATTATTTGTGA
84285236 AAATAATATTTATCATTGTTATAAAAAAATTACTAACTATAAAAATAATTTAAAAAATTATCATT
131 AAATAATATTTATCATTGTTATAAAAAAATTACTAACTATAAAAATAATTTAAAAAATTATCATT
84285301 TTATCTAATTAATAATTTAAATTGATTATATAATTCATTAAAATATTTATAATAAAATATTAGAA
196 TTATCTAATTAATAATTTAAATTGATTATATAATTCATTAAAATATTTATAATAAAATATTAGAA
84285366 GATACATTTTAATATTTTATTAAATGAATTTATAAATTCACATATTTTTAATAATTTTATAAAAA
261 GATACATTTTAATATTTTATTAAATGAATTTATAAATTCACATATTTTTAATAATTTTATAAAAA
84285431 TAAAATAATTTAAAATTTTTTTATTATATATAATTTTTAATAAAATATTCTTATAAATTATTTTT
326 TAAAATAATTTAAAATTTTTTTATTATATATAATTTTTAATAAAATATTCTTATAAATTATTTTT
84285496 TATTCTCATCTTATTGCTATAACTAAGTTTAAATCCAAGCACAGACACAACCA
391 TATTCTCATCTTATTGCTATAACTAAGTTTAAATCCAAGCACAGACACAACCA
84285549 TTGTATCGTAACCGAATTTCTAATATTAATGAAACTTGTTATGTCTTATGTTATTATATTCTTTT
1 TTGTATCGTAACCGAATTTCTAATATTAATGAAACTTGTTATGTCTTATGTTATTATATTCTTTT
84285614 TGTATTAAAAATCATCCGATCAGATATTTTAAAATTTAATCCAAGTATAATATTATTATTTGTGA
66 TGTATTAAAAATCATCCGATCAGATATTTTAAAATTTAATCCAAGTATAATATTATTATTTGTGA
84285679 AAATAATATTTATCATTGTTATAAAAAAATTACTAACTATAAAAATAATTTA
131 AAATAATATTTATCATTGTTATAAAAAAATTACTAACTATAAAAATAATTTA
84285731 TCCAGCGATT
Statistics
Matches: 625, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
443 625 1.00
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.44
Consensus pattern (443 bp):
TTGTATCGTAACCGAATTTCTAATATTAATGAAACTTGTTATGTCTTATGTTATTATATTCTTTT
TGTATTAAAAATCATCCGATCAGATATTTTAAAATTTAATCCAAGTATAATATTATTATTTGTGA
AAATAATATTTATCATTGTTATAAAAAAATTACTAACTATAAAAATAATTTAAAAAATTATCATT
TTATCTAATTAATAATTTAAATTGATTATATAATTCATTAAAATATTTATAATAAAATATTAGAA
GATACATTTTAATATTTTATTAAATGAATTTATAAATTCACATATTTTTAATAATTTTATAAAAA
TAAAATAATTTAAAATTTTTTTATTATATATAATTTTTAATAAAATATTCTTATAAATTATTTTT
TATTCTCATCTTATTGCTATAACTAAGTTTAAATCCAAGCACAGACACAACCA
Found at i:84296507 original size:210 final size:210
Alignment explanation
Indices: 84296145--84296566 Score: 781
Period size: 210 Copynumber: 2.0 Consensus size: 210
84296135 AAAGGGCAAA
*
84296145 CTGAAAGTAATTTTTTTATTTGATACATATATAGATCTAAAATATGTACAGTAACGAAAATATGT
1 CTGAAAGTAATTTTTTTATTTGATACATATATAGATCTAAAATATGTACAGTAACAAAAATATGT
*
84296210 ATATATGTAAAAGTTATATATGTTCAATTTAAAACAATATATTTATAAAAAGTTATCTTCTAAAG
66 ATATATGTAAAAGTTATATATGTTCAATTTAAAACAATATATTTATAAAAAGTTATATTCTAAAG
*
84296275 CTAGTATGATTTTGAAATAAAAAATGAGATTTTAGGGTTTACCTTAAAAATATGGGAAATGTCGA
131 CTAGTATGATTTTGAAATAAAAAATGAAATTTTAGGGTTTACCTTAAAAATATGGGAAATGTCGA
84296340 GACTTTGGTGGAAAT
196 GACTTTGGTGGAAAT
* *
84296355 CTGAAAGTAATTTTTTTATTTGATACGTATATATATCTAAAATATGTACAGTAACAAAAATATGT
1 CTGAAAGTAATTTTTTTATTTGATACATATATAGATCTAAAATATGTACAGTAACAAAAATATGT
*
84296420 ATATATGTAAAAGTTATATATGTTCAATTTAAAACAATATATTTATAAAAAGTTGTATTCTAAAG
66 ATATATGTAAAAGTTATATATGTTCAATTTAAAACAATATATTTATAAAAAGTTATATTCTAAAG
*
84296485 CTAGTATGATTTTGAAATAAAAAATGAAATTTTAGGGTTTACCTTAAAAATATGGGAAATGTGGA
131 CTAGTATGATTTTGAAATAAAAAATGAAATTTTAGGGTTTACCTTAAAAATATGGGAAATGTCGA
84296550 GACTTTGGTGGAAAT
196 GACTTTGGTGGAAAT
84296565 CT
1 CT
84296567 TGTTGAAAAT
Statistics
Matches: 205, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
210 205 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.37
Consensus pattern (210 bp):
CTGAAAGTAATTTTTTTATTTGATACATATATAGATCTAAAATATGTACAGTAACAAAAATATGT
ATATATGTAAAAGTTATATATGTTCAATTTAAAACAATATATTTATAAAAAGTTATATTCTAAAG
CTAGTATGATTTTGAAATAAAAAATGAAATTTTAGGGTTTACCTTAAAAATATGGGAAATGTCGA
GACTTTGGTGGAAAT
Found at i:84299313 original size:46 final size:45
Alignment explanation
Indices: 84299072--84299324 Score: 167
Period size: 48 Copynumber: 5.3 Consensus size: 45
84299062 TCCATCAAGT
* **
84299072 CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCGAAATCG-AGGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGAC-A-C-ATCTCGTA-GC
* ** *
84299121 CGACGCCATGTCCCAGACATGGTCTTATACTAGCTTTCACATATCCGT-GC
1 CGATG-CATGTCCCAGACATGGTC-T-TAC-A-CTGACACATCT-CGTAGC
* *
84299171 CGATGCCATGTCCTAGACATGGTCTTACACTGGA-ACCTCTATACGT-GC
1 CGATG-CATGTCCCAGACATGGTCTTACACT-GACACATC--T-CGTAGC
* *
84299219 CAATGCCACGTCCCAGACATGGTCTTACACTGACACATCTCGTAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGC
* *
84299265 CGATGCATGTCCCAGATAT-GTCTTACACTGGCTTACATCTCG-AGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTA-GC
84299311 CGATGCATGTCCCA
1 CGATGCATGTCCCA
84299325 CCAATGCCAT
Statistics
Matches: 170, Mismatches: 20, Indels: 31
0.77 0.09 0.14
Matches are distributed among these distances:
44 12 0.07
45 16 0.09
46 36 0.21
47 3 0.02
48 41 0.24
49 23 0.14
50 28 0.16
51 6 0.04
52 2 0.01
53 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGC
Found at i:84322252 original size:40 final size:40
Alignment explanation
Indices: 84322197--84322272 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
84322187 NNNNNNNNNN
*
84322197 TGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCG
1 TGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCG
*
84322237 TGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCA
1 TGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCA
84322273 ATCATGCTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
TGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCG
Found at i:84338527 original size:22 final size:22
Alignment explanation
Indices: 84338485--84338536 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
84338475 CAATCAATTT
* *
84338485 CATACTCAATTTCATATCAAAG
1 CATACTCAATTTAATACCAAAG
*
84338507 CATAC-CAATTTAACTACCAAAT
1 CATACTCAATTTAA-TACCAAAG
84338529 CATA-TCAA
1 CATACTCAA
84338537 GATGGCAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.44, C:0.25, G:0.02, T:0.29
Consensus pattern (22 bp):
CATACTCAATTTAATACCAAAG
Found at i:84339333 original size:44 final size:42
Alignment explanation
Indices: 84339177--84339346 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 42
84339167 AACTCGTACA
* * * * ** *
84339177 ATGCCAACGTCCCAGACGTGGTCTTACATGTTATCAAATACCA
1 ATGCCAACATCCCAAACATGGTCTTACACGAAATCAAATA-CG
* *
84339220 ATGCC-ACTGTCCCAAACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAAC-ATCCCAAACATGGTCTTACACGAAATCAAATACG
** *
84339262 ATGCCAATGTCCCAAACATGGTTTTACACGTAAATCTCAAAT-CG
1 ATGCCAACATCCCAAACATGGTCTTACACG-AAA--TCAAATACG
* * * *
84339306 ATGCCAACATCCCAGACGTGGTCTTACACAAAATCACATAC
1 ATGCCAACATCCCAAACATGGTCTTACACGAAATCAAATAC
84339347 CGGAATCCTA
Statistics
Matches: 104, Mismatches: 17, Indels: 13
0.78 0.13 0.10
Matches are distributed among these distances:
41 5 0.05
42 29 0.28
43 38 0.37
44 26 0.25
45 6 0.06
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (42 bp):
ATGCCAACATCCCAAACATGGTCTTACACGAAATCAAATACG
Found at i:84342129 original size:38 final size:37
Alignment explanation
Indices: 84341908--84342315 Score: 214
Period size: 37 Copynumber: 11.2 Consensus size: 37
84341898 TAAACCTGTA
* * * *
84341908 TAAGGCAA-CTATAAAAAGGTTGGTATAGTTCTTGTC
1 TAAGGCAACCTTTAAAAAAGTTGGGATAGATCTTGTC
* * *
84341944 TAAGGCAACTTTTAAGAATAGTTGGGATAGATC-CGTC
1 TAAGGCAACCTTTAA-AAAAGTTGGGATAGATCTTGTC
* * * * *
84341981 TATGGCAACCTTT-AAAAGGTTGGGGTTGACTCAT-T-
1 TAAGGCAACCTTTAAAAAAGTTGGGATAGA-TCTTGTC
* * **
84342016 TAAGGCAATC-TTAAAAAGGTTGGGATAGGCCTTGTC
1 TAAGGCAACCTTTAAAAAAGTTGGGATAGATCTTGTC
* * * * * *
84342052 TAAAGCAACCCTTAAAAAAATTGGTATA-AACCTGATC
1 TAAGGCAACCTTTAAAAAAGTTGGGATAGATCTTG-TC
* *
84342089 TAAAGCAACTTTTTAAAAAAGTTGGGATAGATCTTGTC
1 TAAGGCAAC-CTTTAAAAAAGTTGGGATAGATCTTGTC
* * * * *
84342127 TAAGGCAACCTTTAGGAAAGGTTGGGATAG-GCATGTT
1 TAAGGCAACCTTTA-AAAAAGTTGGGATAGATCTTGTC
* * * *
84342164 TAAGGCAACCTTTTAAAAATGTTAGAATAGA-CATCGTC
1 TAAGGCAACC-TTTAAAAAAGTTGGGATAGATC-TTGTC
* * * *
84342202 TAAGGCAACCTTAAAAAAAGGTTGGGATATA-CTGGTT
1 TAAGGCAACCTTTAAAAAA-GTTGGGATAGATCTTGTC
* * * * *
84342239 TAAAGCAA-CGTTAAGAAGGTTGCGATAGAT-TCT-TC
1 TAAGGCAACCTTTAAAAAAGTTGGGATAGATCT-TGTC
* * * * *
84342274 TAAGGTAACC-TTAAAAACGTTGGTATATATCTTATC
1 TAAGGCAACCTTTAAAAAAGTTGGGATAGATCTTGTC
84342310 TAAGGC
1 TAAGGC
84342316 GACTTTTAGC
Statistics
Matches: 278, Mismatches: 73, Indels: 42
0.71 0.19 0.11
Matches are distributed among these distances:
34 4 0.01
35 66 0.24
36 38 0.14
37 90 0.32
38 76 0.27
39 4 0.01
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (37 bp):
TAAGGCAACCTTTAAAAAAGTTGGGATAGATCTTGTC
Found at i:84342172 original size:75 final size:72
Alignment explanation
Indices: 84341908--84342296 Score: 263
Period size: 75 Copynumber: 5.3 Consensus size: 72
84341898 TAAACCTGTA
* * * * *
84341908 TAAGGCAA-CTATAAAAAGGTTGGTATAGTTCTTGTCTAAGGCAACTTTTAAGAATAGTTGGGAT
1 TAAGGCAACCTTTAAAAAGGTTGGGATAG-AC-TGTTTAAGGCAACTTTTAA-AAAAGTTGGGAT
84341972 AGATC-CGTC
63 AGATCTCGTC
* * * * * *
84341981 TATGGCAACCTTT-AAAAGGTTGGGGTTGACTCATTTAAGGCAA-TCTTAAAAAGGTTGGGATAG
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGACT-GTTTAAGGCAACTTTTAAAAAAGTTGGGATAG
** *
84342044 GCCTTGTC
65 ATCTCGTC
* * ** * * * *
84342052 TAAAGCAACCCTTAAAAAAATTGGTATAAACCTGATCTAAAGCAACTTTTTAAAAAAGTTGGGAT
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGA-CTG-TTTAAGGCAAC-TTTTAAAAAAGTTGGGAT
*
84342117 AGATCTTGTC
63 AGATCTCGTC
* * * * *
84342127 TAAGGCAACCTTTAGGAAAGGTTGGGATAGGCATGTTTAAGGCAACCTTTTAAAAATGTTAGAAT
1 TAAGGCAACCTTTA-AAAAGGTTGGGATAGAC-TGTTTAAGGCAA-CTTTTAAAAAAGTTGGGAT
84342192 AGA-CATCGTC
63 AGATC-TCGTC
* * * * * * *
84342202 TAAGGCAACCTTAAAAAAAGGTTGGGATATACTGGTTTAAAGCAAC-GTTAAGAAGGTTGCGATA
1 TAAGGCAACCTT-TAAAAAGGTTGGGATAGACT-GTTTAAGGCAACTTTTAAAAAAGTTGGGATA
*
84342266 GAT-TCTTC
64 GATCTCGTC
* *
84342274 TAAGGTAACC-TTAAAAACGTTGG
1 TAAGGCAACCTTTAAAAAGGTTGG
84342297 TATATATCTT
Statistics
Matches: 242, Mismatches: 59, Indels: 33
0.72 0.18 0.10
Matches are distributed among these distances:
70 23 0.10
71 20 0.08
72 33 0.14
73 43 0.18
74 6 0.02
75 103 0.43
76 14 0.06
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (72 bp):
TAAGGCAACCTTTAAAAAGGTTGGGATAGACTGTTTAAGGCAACTTTTAAAAAAGTTGGGATAGA
TCTCGTC
Found at i:84342173 original size:37 final size:36
Alignment explanation
Indices: 84341908--84342411 Score: 219
Period size: 35 Copynumber: 13.9 Consensus size: 36
84341898 TAAACCTGTA
* * * *
84341908 TAAGGCAA-CTATAAAAAGGTTGGTATAGTTCTTGTC
1 TAAGGCAACCTTTAAAAAGGTTGGGATAG-ACATGTC
* *
84341944 TAAGGCAACTTTTAAGAATA-GTTGGGATAGATC-CGTC
1 TAAGGCAACCTTTAA-AA-AGGTTGGGATAGA-CATGTC
* * *
84341981 TATGGCAACCTTT-AAAAGGTTGGGGTTGACTCAT-T-
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGA--CATGTC
* * *
84342016 TAAGGCAATC-TTAAAAAGGTTGGGATAGGCCTTGTC
1 TAAGGCAACCTTTAAAAAGGTTGGGATA-GACATGTC
* * ** * * *
84342052 TAAAGCAACCCTTAAAAAAATTGGTATAAACCTGATC
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGACATG-TC
* * * *
84342089 TAAAGCAACTTTTTAAAAAAGTTGGGATAGATCTTGTC
1 TAAGGCAAC-CTTTAAAAAGGTTGGGATAGA-CATGTC
* * *
84342127 TAAGGCAACCTTTAGGAAAGGTTGGGATAGGCATGTT
1 TAAGGCAACCTTTA-AAAAGGTTGGGATAGACATGTC
* * *
84342164 TAAGGCAACCTTTTAAAAATGTTAGAATAGACATCGTC
1 TAAGGCAACC-TTTAAAAAGGTTGGGATAGACAT-GTC
* * *
84342202 TAAGGCAACCTTAAAAAAAGGTTGGGATATAC-TGGTT
1 TAAGGCAACCTT-TAAAAAGGTTGGGATAGACAT-GTC
* * * *
84342239 TAAAGCAA-CGTTAAGAAGGTTGCGATAGATTC-T-TC
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGA--CATGTC
* * * * * *
84342274 TAAGGTAACC-TTAAAAACGTTGGTATATATCTTATC
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGA-CATGTC
* * * * * *
84342310 TAAGGCGACTTTTAGCAAAGGTTGGGATTGACCTATC
1 TAAGGCAACCTTTA-AAAAGGTTGGGATAGACATGTC
* * * ** * *
84342347 TAAGACAA-CGTTAAAAATGTTGAAATAGACCTGTT
1 TAAGGCAACCTTTAAAAAGGTTGGGATAGACATGTC
*
84342382 TACA-GCAACC-CTAAAAAGGTTGGGATAGAC
1 TA-AGGCAACCTTTAAAAAGGTTGGGATAGAC
84342412 CTTTTCCAAT
Statistics
Matches: 351, Mismatches: 89, Indels: 57
0.71 0.18 0.11
Matches are distributed among these distances:
34 7 0.02
35 104 0.30
36 41 0.12
37 103 0.29
38 92 0.26
39 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (36 bp):
TAAGGCAACCTTTAAAAAGGTTGGGATAGACATGTC
Found at i:84355191 original size:29 final size:29
Alignment explanation
Indices: 84355156--84355229 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
84355146 GTTGTGAGAT
* *
84355156 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
84355185 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
84355214 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
84355230 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Done.