Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 256 of 284
Found at i:86165616 original size:28 final size:28
Alignment explanation
Indices: 86165584--86165652 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
86165574 CAGCCCACTT
*
86165584 GGCCCAATCTCATTTATATGGCCCATCA
1 GGCCCAATCACATTTATATGGCCCATCA
* * *
86165612 GGCCCAAATCACCTTTATATGGCCCGTTA
1 GGCCC-AATCACATTTATATGGCCCATCA
86165641 GGCCCAAATCAC
1 GGCCC-AATCAC
86165653 CTTATATTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 5 0.14
29 31 0.86
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (28 bp):
GGCCCAATCACATTTATATGGCCCATCA
Found at i:86165631 original size:29 final size:29
Alignment explanation
Indices: 86165596--86165659 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
86165586 CCCAATCTCA
86165596 TTTATATGGCCCATCAGGCCCAAATCACC
1 TTTATATGGCCCATCAGGCCCAAATCACC
* *
86165625 TTTATATGGCCCGTTAGGCCCAAATCACC
1 TTTATATGGCCCATCAGGCCCAAATCACC
86165654 -TTATAT
1 TTTATAT
86165660 TCATGCTCAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
28 6 0.18
29 27 0.82
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTATATGGCCCATCAGGCCCAAATCACC
Found at i:86170633 original size:18 final size:19
Alignment explanation
Indices: 86170610--86170649 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
86170600 GACCCCTTGG
*
86170610 TGGTAGTTGAACACC-CCT
1 TGGTAGCTGAACACCACCT
86170628 TGGTAGCTGAACACCACCT
1 TGGTAGCTGAACACCACCT
86170647 TGG
1 TGG
86170650 CCCACTACTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (19 bp):
TGGTAGCTGAACACCACCT
Found at i:86173293 original size:29 final size:28
Alignment explanation
Indices: 86173201--86173319 Score: 118
Period size: 29 Copynumber: 4.2 Consensus size: 28
86173191 TACATACATG
* *
86173201 TATATGGCCCACTT-GGCCCAATCTCATT
1 TATATGGCCCA-TTAGGCCCAATCACCTT
* *
86173229 TATATGGCCCATCAGGCCCAAT-TCCTAT
1 TATATGGCCCATTAGGCCCAATCACCT-T
86173257 TCATATGGCCCATTAGGCCCAAATCACCTT
1 T-ATATGGCCCATTAGGCCC-AATCACCTT
* *
86173287 TACATGGCCCGTTAGGCCCAAATCACC-T
1 TATATGGCCCATTAGGCCC-AATCACCTT
86173315 TATAT
1 TATAT
86173320 TCACTCTCAC
Statistics
Matches: 79, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
27 4 0.05
28 26 0.33
29 41 0.52
30 5 0.06
31 3 0.04
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCACCTT
Found at i:86174614 original size:53 final size:53
Alignment explanation
Indices: 86174518--86174627 Score: 175
Period size: 53 Copynumber: 2.1 Consensus size: 53
86174508 AGCGTTACTT
86174518 AGCCACTCCTCCACAAGGCTTTTTGATGCCATTTTCCCCTATCTTTATTTAAA
1 AGCCACTCCTCCACAAGGCTTTTTGATGCCATTTTCCCCTATCTTTATTTAAA
* * * * *
86174571 AGCCTCTCTTCCATAAGGCTTTTTGATGCCATTTTCTCTTATCTTTATTTAAA
1 AGCCACTCCTCCACAAGGCTTTTTGATGCCATTTTCCCCTATCTTTATTTAAA
86174624 AGCC
1 AGCC
86174628 CAACTACTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.22, C:0.27, G:0.10, T:0.41
Consensus pattern (53 bp):
AGCCACTCCTCCACAAGGCTTTTTGATGCCATTTTCCCCTATCTTTATTTAAA
Found at i:86175645 original size:33 final size:33
Alignment explanation
Indices: 86175603--86175679 Score: 129
Period size: 33 Copynumber: 2.3 Consensus size: 33
86175593 TACACTTTGT
*
86175603 TTGGTGTGTT-AGTTGGATTAGCTTTTATGAGCA
1 TTGGTGTGTTGA-TTGGATTAGCTCTTATGAGCA
86175636 TTGGTGTGTTGATTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGATTGGATTAGCTCTTATGAGCA
86175669 TTGGTGTGTTG
1 TTGGTGTGTTG
86175680 GAGGGATTGA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
33 41 0.98
34 1 0.02
ACGTcount: A:0.16, C:0.06, G:0.32, T:0.45
Consensus pattern (33 bp):
TTGGTGTGTTGATTGGATTAGCTCTTATGAGCA
Found at i:86175687 original size:33 final size:32
Alignment explanation
Indices: 86175603--86175712 Score: 123
Period size: 33 Copynumber: 3.3 Consensus size: 32
86175593 TACACTTTGT
* *
86175603 TTGGTGTGTTAGTTGGATTAGCTTTTATGAGCA
1 TTGGTGTGTT-GATGGATTAGCTCTTATGAGCA
86175636 TTGGTGTGTTGATTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGA-TGGATTAGCTCTTATGAGCA
* * *
86175669 TTGGTGTGTTGGAGGGATT-GACTCGTGTGAGCA
1 TTGGTGTGTT-GATGGATTAG-CTCTTATGAGCA
86175702 TTTGGTGTGTT
1 -TTGGTGTGTT
86175713 TGGTTGGACT
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
32 2 0.03
33 54 0.79
34 12 0.18
ACGTcount: A:0.15, C:0.07, G:0.35, T:0.43
Consensus pattern (32 bp):
TTGGTGTGTTGATGGATTAGCTCTTATGAGCA
Found at i:86176172 original size:11 final size:11
Alignment explanation
Indices: 86176140--86176173 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
86176130 ATATTATACA
86176140 AATGAAATGGT
1 AATGAAATGGT
*
86176151 AA-GAAAAGGT
1 AATGAAATGGT
86176161 AATGAAATGGT
1 AATGAAATGGT
86176172 AA
1 AA
86176174 GTTCATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.53, C:0.00, G:0.26, T:0.21
Consensus pattern (11 bp):
AATGAAATGGT
Found at i:86178427 original size:26 final size:25
Alignment explanation
Indices: 86178398--86178478 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 25
86178388 TATCTGAAGC
86178398 TCCTGATTAAAGGCTCTTCGTGAGCT
1 TCCTGATTAAAGGCTCTT-GTGAGCT
* *** *
86178424 TCCTAATTAAAAATTCTTTGTGAACT
1 TCCTGATTAAAGGCTC-TTGTGAGCT
* *
86178450 TCCTGATT-ATGGCTCTTATGAGCT
1 TCCTGATTAAAGGCTCTTGTGAGCT
86178474 TCCTG
1 TCCTG
86178479 TTATTTAGCC
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
24 12 0.29
25 3 0.07
26 25 0.60
27 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (25 bp):
TCCTGATTAAAGGCTCTTGTGAGCT
Found at i:86178538 original size:26 final size:26
Alignment explanation
Indices: 86178507--86178574 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
86178497 CTTCTTGGTA
86178507 GGCTCTTTGTGAGCTTCCCAATTAAT
1 GGCTCTTTGTGAGCTTCCCAATTAAT
86178533 GGCTCTTTGTGAGCTTCCCAATTAAT
1 GGCTCTTTGTGAGCTTCCCAATTAAT
*
86178559 GGCTCTTTGCGAGCTT
1 GGCTCTTTGTGAGCTT
86178575 ACTGTTATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
GGCTCTTTGTGAGCTTCCCAATTAAT
Found at i:86182471 original size:103 final size:103
Alignment explanation
Indices: 86182017--86182450 Score: 798
Period size: 103 Copynumber: 4.2 Consensus size: 103
86182007 AACCTGTTCT
** *
86182017 CTTGCTA-TCTCAGGAAGATAACACTTGGGGCTTAAATCTGCTCCATTGCCGGTACATGGAGATA
1 CTTGCTACT-TCAGGAAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGTCGGTACATGGAGATA
*
86182081 AGATTTGCCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
65 AGATTTGTCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
*
86182120 CTTGCTACTTCAGGAAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGTCGGTACATGGAGGTAA
1 CTTGCTACTTCAGGAAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGTCGGTACATGGAGATAA
86182185 GATTTGTCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
66 GATTTGTCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
86182223 CTTGCTACTTCAGGAAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGTCGGTACATGGAGATAA
1 CTTGCTACTTCAGGAAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGTCGGTACATGGAGATAA
86182288 GATTTGTCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
66 GATTTGTCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
*
86182326 CTTGCTACTTCAGGAAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGTCGGTACATGGAGGTAA
1 CTTGCTACTTCAGGAAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGTCGGTACATGGAGATAA
86182391 GATTTGTCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
66 GATTTGTCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
86182429 CTTGCTACTTCAGGAAGATAAG
1 CTTGCTACTTCAGGAAGATAAG
86182451 ACTTCAATCT
Statistics
Matches: 323, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
103 322 1.00
104 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.35
Consensus pattern (103 bp):
CTTGCTACTTCAGGAAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGTCGGTACATGGAGATAA
GATTTGTCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
Found at i:86182478 original size:44 final size:44
Alignment explanation
Indices: 86182408--86182494 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
86182398 CTTTTCCAAT
** *
86182408 CTTCAATCTTCAGTCTGCTTCCTTGCTACTTCAG-GAAGATAAGA
1 CTTCAATCTTCAACCTGCTTCCTTGCTACCTCAGAG-AGATAAGA
*
86182452 CTTCAATCTTCAACCTGC-TCTTTTGCTACCTCAGAGAGATAAG
1 CTTCAATCTTCAACCTGCTTC-CTTGCTACCTCAGAGAGATAAG
86182495 GCCTTGAGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 2 0.05
44 34 0.92
45 1 0.03
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.33
Consensus pattern (44 bp):
CTTCAATCTTCAACCTGCTTCCTTGCTACCTCAGAGAGATAAGA
Found at i:86182540 original size:148 final size:147
Alignment explanation
Indices: 86182305--86182690 Score: 546
Period size: 148 Copynumber: 2.6 Consensus size: 147
86182295 CTTTTCCAAT
** * *
86182305 CTTCAATCTTCAGTCTGCT-TCCTTGCTACTTCAG-GAAGATAAGGCTTGGGGCTTAAATCTGCT
1 CTTCAATCTTCAACCTGCTCT-CTTGCTACCTCAGAG-AGATAAGGCTTGAGGCTTAAATCTGCT
* * * * *
86182368 CCATTGTCGGTACATGGAGGTAAGATTTGTCTTTTCCAATCTTCAATCTTCAGTCTGCTTCCTTG
64 CCATTGTCGGTACATGGAGATAAGATTCGCCTCTTCCAACCTTCAATCTTCAGTCTGCTTCCTTG
* *
86182433 CTACTTCAGGAAGATAAGA
129 CTACCTCAAGAAGATAAGA
*
86182452 CTTCAATCTTCAACCTGCTCTTTTGCTACCTCAGAGAGATAAGGCCTTGAGGCTTAAATCTGCTC
1 CTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGG-CTTGAGGCTTAAATCTGCTC
* *
86182517 TATTG-CTGGTACATGAAGATAAGATTCGCCTCTTCCAACCTTCAATCTTCAGTCTGCTTCCTTG
65 CATTGTC-GGTACATGGAGATAAGATTCGCCTCTTCCAACCTTCAATCTTCAGTCTGCTTCCTTG
*
86182581 TTACCTCAAGAAGATAAGA
129 CTACCTCAAGAAGATAAGA
*
86182600 CTTCAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTT-AGGGCTTAAATCTGCTC
1 CTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGA-GGCTTAAATCTGCTC
*
86182664 CATTGTCGATACATGGAGATAAGATTC
65 CATTGTCGGTACATGGAGATAAGATTC
86182691 ATCATCTATG
Statistics
Matches: 213, Mismatches: 20, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
146 1 0.00
147 77 0.36
148 135 0.63
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (147 bp):
CTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGAGGCTTAAATCTGCTCC
ATTGTCGGTACATGGAGATAAGATTCGCCTCTTCCAACCTTCAATCTTCAGTCTGCTTCCTTGCT
ACCTCAAGAAGATAAGA
Found at i:86182859 original size:180 final size:177
Alignment explanation
Indices: 86182556--86182959 Score: 562
Period size: 180 Copynumber: 2.3 Consensus size: 177
86182546 CTCTTCCAAC
* * *
86182556 CTTCAATCTTCAGTCTGCTTCCTTGTTACCTCAAGAAGATAAGACTTCAATCTTCAACCTGCTCT
1 CTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGAC-TCAATCTTCAACCTGCTCT
* * *
86182621 CTTGCTACCTTAGAGAGATAAGGCTTAGGGCTTAAATCTGCTCCATTGTCGATACATGGAGATAA
65 CTTGCTACCTCAGAGAGATAAGGCTTAGGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAA
* *
86182686 GATTCATCATCTATGAAGATCTGCTCTGCTGCAACTTCAGGGAGATAAAAT
130 GATTCACCATCT-T-AA-ATCTGCTCTACTGCAACTTCAGGGAGATAAAAT
*
86182737 CTTCAATTCTT-AGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCT
1 CTTCAA-TCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCT
* * *
86182801 CTTGCTACGTCAGATAGATAAGGCTT-GGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATA
65 CTTGCTACCTCAGAGAGATAAGGCTTAGG-GCTAAAATCTGCTCCATTGCCGATACATGGAGATA
* *
86182865 AGATTCACCATCTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGAT
129 AGATTCACCATCTTAAATCTGCTCTACTGCAACTTCAGGGAGATAAAAT
* * * *
86182914 CTTTAATCTTCAGTCTAC-TCCACTGCAACCTCAGGGAGATAAGACT
1 CTTCAATCTTCAGTCTACTTCC-TTGCTACCTCAGGAAGATAAGACT
86182960 TGTTATGATC
Statistics
Matches: 201, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
176 7 0.03
177 64 0.32
178 1 0.00
179 3 0.01
180 85 0.42
181 37 0.18
182 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (177 bp):
CTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTC
TTGCTACCTCAGAGAGATAAGGCTTAGGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAG
ATTCACCATCTTAAATCTGCTCTACTGCAACTTCAGGGAGATAAAAT
Found at i:86182907 original size:45 final size:44
Alignment explanation
Indices: 86182858--86182960 Score: 127
Period size: 45 Copynumber: 2.3 Consensus size: 44
86182848 GCCGATACAT
* * *
86182858 GGAGATAAGA-TTCACCATCTTCAATCTGCTCTACTGCAACTTCAG
1 GGAGATAAGACTTCA--ATCTTCAATCTACTCCACTGCAACCTCAG
* *
86182903 GGAGATAAGATCTTTAATCTTCAGTCTACTCCACTGCAACCTCAG
1 GGAGATAAGA-CTTCAATCTTCAATCTACTCCACTGCAACCTCAG
86182948 GGAGATAAGACTT
1 GGAGATAAGACTT
86182961 GTTATGATCT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
44 3 0.06
45 45 0.88
47 3 0.06
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (44 bp):
GGAGATAAGACTTCAATCTTCAATCTACTCCACTGCAACCTCAG
Found at i:86183238 original size:64 final size:64
Alignment explanation
Indices: 86183137--86183392 Score: 359
Period size: 64 Copynumber: 4.0 Consensus size: 64
86183127 TTCATGTATC
* * * * * *
86183137 ATGCTTATGCCAAATAATTAGGATGTTATGATCAAAATGAATCAAATACTCCTAATTAGACGTG
1 ATGCTGATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * *
86183201 ATGCTTATGACACATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTGATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
** * *
86183265 ATGCTGATGTCAAATAATTAGGCCGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTA
1 ATGCTGATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * * *
86183329 ATGCTGATGTCAAATAATTAGGATGCTATTATCGAAATGAATCAAATGCACCTAACTAAATGTG
1 ATGCTGATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
86183393 TTATGAATGA
Statistics
Matches: 173, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 173 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (64 bp):
ATGCTGATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:86183456 original size:7 final size:7
Alignment explanation
Indices: 86183444--86183474 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
86183434 TTAAATAATC
86183444 TTTCTTT
1 TTTCTTT
86183451 TTTCTTT
1 TTTCTTT
86183458 TTTCTTT
1 TTTCTTT
*
86183465 TTCCTTT
1 TTTCTTT
86183472 TTT
1 TTT
86183475 TTTAAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTCTTT
Found at i:86185974 original size:19 final size:19
Alignment explanation
Indices: 86185950--86185986 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
86185940 AAAAATAGTC
86185950 TAAAGAACAAAAGAATATA
1 TAAAGAACAAAAGAATATA
**
86185969 TAAAGAATGAAAGAATAT
1 TAAAGAACAAAAGAATAT
86185987 TTACTCAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.14, T:0.19
Consensus pattern (19 bp):
TAAAGAACAAAAGAATATA
Found at i:86187826 original size:28 final size:28
Alignment explanation
Indices: 86187786--86187845 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
86187776 ACGTTGATTA
86187786 GCTCCGTTAAGAAAATCGAGATGTGACG
1 GCTCCGTTAAGAAAATCGAGATGTGACG
*
86187814 GCTCCGTTAAGAAAATTGAGATGTGACG
1 GCTCCGTTAAGAAAATCGAGATGTGACG
86187842 GCTC
1 GCTC
86187846 TCAAACAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (28 bp):
GCTCCGTTAAGAAAATCGAGATGTGACG
Found at i:86193845 original size:27 final size:26
Alignment explanation
Indices: 86193810--86193921 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
86193800 AGCATGGCTG
* *
86193810 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
86193836 CCAGATACAGATAACCGTGGCAGAACCA
1 CCAGA-ACAGATAA-TGTGGCAGAGCCA
*
86193864 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
86193891 CCAGATCAGATGATTATGGCATAGCCA
1 CCAGAACAGAT-AATGTGGCAGAGCCA
86193918 CCAG
1 CCAG
86193922 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 5 0.07
27 49 0.70
28 16 0.23
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:86195384 original size:24 final size:24
Alignment explanation
Indices: 86195352--86195425 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 24
86195342 ACACAGTTCA
86195352 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
*
86195376 CCCTGATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
* *
86195400 CCCTTATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCCTCT
86195424 CC
1 CC
86195426 AGACAGACTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.22, C:0.42, G:0.05, T:0.31
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCCTCT
Found at i:86196747 original size:22 final size:22
Alignment explanation
Indices: 86196719--86196761 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
86196709 GCACTAATGA
86196719 ACAGAGAGCACTAAAGTGCTAT
1 ACAGAGAGCACTAAAGTGCTAT
*
86196741 ACAGAGAGCACTAACGTGCTA
1 ACAGAGAGCACTAAAGTGCTA
86196762 ATAATCAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (22 bp):
ACAGAGAGCACTAAAGTGCTAT
Found at i:86196777 original size:25 final size:25
Alignment explanation
Indices: 86196712--86196823 Score: 126
Period size: 25 Copynumber: 4.6 Consensus size: 25
86196702 TTATTATGCA
86196712 CTAATGAA-CAGAGAGCACTAA-AGTG
1 CTAAT-AATCAGAGAGCACTAACA-TG
*
86196737 CT-AT-A-CAGAGAGCACTAACGTG
1 CTAATAATCAGAGAGCACTAACATG
* *
86196759 CTAATAATCAGAGATCACTGACATG
1 CTAATAATCAGAGAGCACTAACATG
*
86196784 CTAATAATAAGAGAGCACTAACATG
1 CTAATAATCAGAGAGCACTAACATG
*
86196809 CTAACAATCAGAGAG
1 CTAATAATCAGAGAG
86196824 AGCGCTAAGG
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
22 18 0.24
23 2 0.03
24 3 0.04
25 51 0.69
ACGTcount: A:0.43, C:0.19, G:0.20, T:0.19
Consensus pattern (25 bp):
CTAATAATCAGAGAGCACTAACATG
Found at i:86198085 original size:3 final size:3
Alignment explanation
Indices: 86198077--86198139 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
86198067 TCTTTAATTT
** *
86198077 ATA ATA ATA ATA ATA ATA ATA ATA ATA CCA AT- ATC ATA AT- ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
86198121 ATA ATA AT- ATA ATA TATA A
1 ATA ATA ATA ATA ATA -ATA A
86198140 ATATCTTTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
2 6 0.12
3 39 0.78
4 5 0.10
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:86198123 original size:20 final size:19
Alignment explanation
Indices: 86198082--86198142 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
86198072 AATTTATAAT
*
86198082 AATAATAATAATAATA-AT-
1 AATAACAAT-ATAATATATA
* *
86198100 AATACCAATATCATAATATA
1 AATAACAATATAAT-ATATA
*
86198120 AATAATAATATAATATATA
1 AATAACAATATAATATATA
86198139 AATA
1 AATA
86198143 TCTTTTACTT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
17 4 0.12
18 8 0.24
19 11 0.32
20 11 0.32
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAACAATATAATATATA
Found at i:86198272 original size:20 final size:18
Alignment explanation
Indices: 86198247--86198283 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
86198237 ATAAATTTAT
86198247 TTATTTCATAATATAATATC
1 TTATTT-ATAAT-TAATATC
86198267 TTATTTATAATTAATAT
1 TTATTTATAATTAATAT
86198284 AAATTACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATTTATAATTAATATC
Found at i:86205919 original size:87 final size:87
Alignment explanation
Indices: 86205773--86205941 Score: 338
Period size: 87 Copynumber: 1.9 Consensus size: 87
86205763 AAAAAAAAAC
86205773 AAATTATATTAATTACTATTTTAATATCATGATTCAAAAGGTCAACACTTTATAAAATCTAGTAA
1 AAATTATATTAATTACTATTTTAATATCATGATTCAAAAGGTCAACACTTTATAAAATCTAGTAA
86205838 TTAAGTTGAATATCATGTAAAT
66 TTAAGTTGAATATCATGTAAAT
86205860 AAATTATATTAATTACTATTTTAATATCATGATTCAAAAGGTCAACACTTTATAAAATCTAGTAA
1 AAATTATATTAATTACTATTTTAATATCATGATTCAAAAGGTCAACACTTTATAAAATCTAGTAA
86205925 TTAAGTTGAATATCATG
66 TTAAGTTGAATATCATG
86205942 AATCAAAAGT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 82 1.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.39
Consensus pattern (87 bp):
AAATTATATTAATTACTATTTTAATATCATGATTCAAAAGGTCAACACTTTATAAAATCTAGTAA
TTAAGTTGAATATCATGTAAAT
Found at i:86206059 original size:11 final size:11
Alignment explanation
Indices: 86206045--86206071 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
86206035 AAAAATCAAT
86206045 ACAAAAGTTTC
1 ACAAAAGTTTC
86206056 ACAAAAGTTTC
1 ACAAAAGTTTC
86206067 ACAAA
1 ACAAA
86206072 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:86217291 original size:13 final size:13
Alignment explanation
Indices: 86217269--86217301 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
86217259 AAGGATTTGT
86217269 TTAT-TAAACTAA
1 TTATCTAAACTAA
86217281 TTATCTAAACTAA
1 TTATCTAAACTAA
*
86217294 TTAACTAA
1 TTATCTAA
86217302 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:86218401 original size:21 final size:22
Alignment explanation
Indices: 86218377--86218417 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
86218367 CTGGATTAAG
86218377 AGTACCAAA-ATCCATAAATCT
1 AGTACCAAACATCCATAAATCT
**
86218398 AGTAGTAAACATCCATAAAT
1 AGTACCAAACATCCATAAAT
86218418 ATGCTAAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (22 bp):
AGTACCAAACATCCATAAATCT
Found at i:86220183 original size:6 final size:5
Alignment explanation
Indices: 86220154--86220245 Score: 66
Period size: 5 Copynumber: 17.8 Consensus size: 5
86220144 TATGTCTTTC
* * *
86220154 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAG AAAAGA
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAAT AAAA-T
86220202 AAAAT AAAAT -AAAT AAAAT AAAAT AAAAAT AAAA- ATAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT A-AAAT AAAA
86220246 AAATAATAGG
Statistics
Matches: 71, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
3 3 0.04
4 5 0.07
5 36 0.51
6 27 0.38
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:86229620 original size:25 final size:25
Alignment explanation
Indices: 86229585--86229671 Score: 120
Period size: 25 Copynumber: 3.5 Consensus size: 25
86229575 ACATATGTGC
* * *
86229585 TAATCAAAGAGCACTAACGTGTTAA
1 TAATCAGAGAGCACTGACGTGCTAA
*
86229610 TAATCAGAGAGCACTGACGTGCAAA
1 TAATCAGAGAGCACTGACGTGCTAA
*
86229635 TAATGAGAGAGCACTGACGTGCTAA
1 TAATCAGAGAGCACTGACGTGCTAA
*
86229660 TAATCATAGAGC
1 TAATCAGAGAGC
86229672 GCACTAAGGT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (25 bp):
TAATCAGAGAGCACTGACGTGCTAA
Found at i:86235926 original size:39 final size:40
Alignment explanation
Indices: 86235814--86236021 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
86235804 TATTCAAATG
* * *
86235814 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
* *
86235855 ATATCCGGACTAAGAT-CCGAAGGAATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
86235895 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
86235934 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
86235974 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
86236014 ATATCCGG
1 ATATCCGG
86236022 TTAAATTCCG
Statistics
Matches: 145, Mismatches: 16, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
39 36 0.25
40 81 0.56
41 27 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:86235954 original size:79 final size:79
Alignment explanation
Indices: 86235814--86236035 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 79
86235804 TATTCAAATG
* * * **
86235814 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGA
86235879 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * *
86235895 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGA
86235958 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
86235974 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
86236036 TATGTGATTC
Statistics
Matches: 121, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 63 0.52
80 45 0.37
81 12 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGAAT
TTGTGCGAGTTACT
Found at i:86236880 original size:22 final size:22
Alignment explanation
Indices: 86236841--86236883 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
86236831 TGAATCTATT
86236841 TTCATAGGAAAGTAACGAAACG
1 TTCATAGGAAAGTAACGAAACG
*
86236863 TTCATATGAACAGT-ACGAAAC
1 TTCATAGGAA-AGTAACGAAAC
86236884 TGAGTCTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (22 bp):
TTCATAGGAAAGTAACGAAACG
Found at i:86239279 original size:46 final size:46
Alignment explanation
Indices: 86239223--86239576 Score: 387
Period size: 46 Copynumber: 7.6 Consensus size: 46
86239213 TGGTTGAGCA
86239223 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
86239269 TCCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
86239314 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
86239362 TCCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
86239407 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
86239455 TCCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
86239500 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
86239548 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
86239577 GTGAGATGTA
Statistics
Matches: 263, Mismatches: 12, Indels: 66
0.77 0.04 0.19
Matches are distributed among these distances:
42 12 0.05
43 18 0.07
45 3 0.01
46 113 0.43
47 84 0.32
48 3 0.01
50 18 0.07
51 12 0.05
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:86239338 original size:47 final size:47
Alignment explanation
Indices: 86239269--86239623 Score: 395
Period size: 47 Copynumber: 7.6 Consensus size: 47
86239259 GATGCGAATG
86239269 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* *
86239316 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCT-ATGGATGCGAA-T--G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTGA--GATG-TAACTAGGCA
86239362 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* *
86239409 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCT-ATGGATGCGAA-T--G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTGA--GATG-TAACTAGGCA
86239455 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* *
86239502 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCT-ATGGATGCGAA-T--G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTGA--GATG-TAACTAGGCA
86239548 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
86239595 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
86239624 ACTTAGGGGT
Statistics
Matches: 263, Mismatches: 12, Indels: 66
0.77 0.04 0.19
Matches are distributed among these distances:
42 6 0.02
43 15 0.06
44 6 0.02
45 6 0.02
46 84 0.32
47 113 0.43
48 6 0.02
49 6 0.02
50 15 0.06
51 6 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:86239379 original size:93 final size:93
Alignment explanation
Indices: 86239220--86239625 Score: 812
Period size: 93 Copynumber: 4.4 Consensus size: 93
86239210 GGATGGTTGA
86239220 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
86239285 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
86239313 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
86239378 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
86239406 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
86239471 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
86239499 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
86239564 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
86239592 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
86239626 TTAGGGGTGG
Statistics
Matches: 313, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 313 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:86247542 original size:240 final size:240
Alignment explanation
Indices: 86247119--86247597 Score: 940
Period size: 240 Copynumber: 2.0 Consensus size: 240
86247109 TGAGTCCGAG
*
86247119 TTCACTTAGGGGTGGGTTACATGATTTCTTGATTACATATGAGGCACTTATGTGCAAATTATCCG
1 TTCACTTAGGGGCGGGTTACATGATTTCTTGATTACATATGAGGCACTTATGTGCAAATTATCCG
86247184 TGTATCCGAGTTGTATTCCGATGTGTTCAACGGGTGAAATTTCTAGTGAAATGGAAGAACACTTA
66 TGTATCCGAGTTGTATTCCGATGTGTTCAACGGGTGAAATTTCTAGTGAAATGGAAGAACACTTA
86247249 AGATGCAAGTGACGTTTTGGTAAGTGTTGTGAAATGGACACTTTGGACAGGTATGTTCTTAACCC
131 AGATGCAAGTGACGTTTTGGTAAGTGTTGTGAAATGGACACTTTGGACAGGTATGTTCTTAACCC
86247314 TCGGGTTGAAAATAGATACAACAACGATAAGGTGGTAAGATGATA
196 TCGGGTTGAAAATAGATACAACAACGATAAGGTGGTAAGATGATA
86247359 TTCACTTAGGGGCGGGTTACATGATTTCTTGATTACATATGAGGCACTTATGTGCAAATTATCCG
1 TTCACTTAGGGGCGGGTTACATGATTTCTTGATTACATATGAGGCACTTATGTGCAAATTATCCG
*
86247424 TGTATCCGAGTTGTATTTCGATGTGTTCAACGGGTGAAATTTCTAGTGAAATGGAAGAACACTTA
66 TGTATCCGAGTTGTATTCCGATGTGTTCAACGGGTGAAATTTCTAGTGAAATGGAAGAACACTTA
86247489 AGATGCAAGTGACGTTTTGGTAAGTGTTGTGAAATGGACACTTTGGACAGGTATGTTCTTAACCC
131 AGATGCAAGTGACGTTTTGGTAAGTGTTGTGAAATGGACACTTTGGACAGGTATGTTCTTAACCC
86247554 TCGGGTTGAAAATAGATACAACAACGATAAGGTGGTAAGATGAT
196 TCGGGTTGAAAATAGATACAACAACGATAAGGTGGTAAGATGAT
86247598 GAATGATGTT
Statistics
Matches: 237, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
240 237 1.00
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.32
Consensus pattern (240 bp):
TTCACTTAGGGGCGGGTTACATGATTTCTTGATTACATATGAGGCACTTATGTGCAAATTATCCG
TGTATCCGAGTTGTATTCCGATGTGTTCAACGGGTGAAATTTCTAGTGAAATGGAAGAACACTTA
AGATGCAAGTGACGTTTTGGTAAGTGTTGTGAAATGGACACTTTGGACAGGTATGTTCTTAACCC
TCGGGTTGAAAATAGATACAACAACGATAAGGTGGTAAGATGATA
Found at i:86248534 original size:38 final size:38
Alignment explanation
Indices: 86248492--86248564 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
86248482 GAGTCTAGAT
*
86248492 GTAGGGAAAATTTATGGATCTTGATTTCGAGTTTCGTA
1 GTAGGGAAAATTTACGGATCTTGATTTCGAGTTTCGTA
*
86248530 GTAGGGAAAATTTACGGATCTTGATTTTGAGTTTC
1 GTAGGGAAAATTTACGGATCTTGATTTCGAGTTTC
86248565 ATAACTTGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.40
Consensus pattern (38 bp):
GTAGGGAAAATTTACGGATCTTGATTTCGAGTTTCGTA
Found at i:86254908 original size:28 final size:28
Alignment explanation
Indices: 86254868--86254935 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
86254858 AGTAAGTCCT
*
86254868 CACACTTAGTGCT-TAATAATCAAACTCG
1 CACACTTAGTGCTAT-ACAATCAAACTCG
*
86254896 CACACTTAGTGCTATACAATTAAACTCG
1 CACACTTAGTGCTATACAATCAAACTCG
86254924 CACACTTAGTGC
1 CACACTTAGTGC
86254936 CAATCTCATT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATACAATCAAACTCG
Found at i:86258124 original size:49 final size:49
Alignment explanation
Indices: 86258071--86258201 Score: 171
Period size: 47 Copynumber: 2.8 Consensus size: 49
86258061 TTAGGATTCT
* *
86258071 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCA
* * *
86258120 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCA
* *
86258167 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
86258202 TCCCGAAGGG
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
47 48 0.68
48 1 0.01
49 22 0.31
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCA
Found at i:86258370 original size:37 final size:37
Alignment explanation
Indices: 86258320--86258435 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
86258310 CCGAGCTCTA
86258320 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
86258357 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
86258394 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
86258431 AAGAC
1 AAGAC
86258436 TTCGTAATAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:86265021 original size:39 final size:39
Alignment explanation
Indices: 86264989--86265097 Score: 166
Period size: 39 Copynumber: 2.8 Consensus size: 39
86264979 TAAAAACATG
* * * *
86264989 TATTAAAGATGTCCAAACTATGACATAATT-AAAACTCT
1 TATTAATGATGTTCAAATTATGACATAATTAAAAACTCA
*
86265027 TATTAATGATGTTCAGATTATGACATAATTAAAAACTCA
1 TATTAATGATGTTCAAATTATGACATAATTAAAAACTCA
86265066 TATTAATGATGTTCAAATTATGACATAATTAA
1 TATTAATGATGTTCAAATTATGACATAATTAA
86265098 GGACTCAAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
38 26 0.41
39 38 0.59
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.36
Consensus pattern (39 bp):
TATTAATGATGTTCAAATTATGACATAATTAAAAACTCA
Found at i:86272377 original size:13 final size:13
Alignment explanation
Indices: 86272359--86272384 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86272349 GTCAAACTGT
86272359 TGTTAAGAATGCC
1 TGTTAAGAATGCC
86272372 TGTTAAGAATGCC
1 TGTTAAGAATGCC
86272385 ACTACAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTTAAGAATGCC
Found at i:86281379 original size:25 final size:25
Alignment explanation
Indices: 86281345--86281394 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
86281335 ATACATCGAA
86281345 TTCATTACTCATGAATTTTGCGTAC
1 TTCATTACTCATGAATTTTGCGTAC
86281370 TTCATTACTCATGAATTTTGCGTAC
1 TTCATTACTCATGAATTTTGCGTAC
86281395 ATACTTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (25 bp):
TTCATTACTCATGAATTTTGCGTAC
Found at i:86283035 original size:41 final size:43
Alignment explanation
Indices: 86282954--86283078 Score: 121
Period size: 41 Copynumber: 3.0 Consensus size: 43
86282944 TGGCATCGAT
* *
86282954 ATATGTGGTTACATGTAAGACCATGTTTGAGACTTCGGCAT-C
1 ATATGTGATTACATGTAAGACCATGTTTGAGACGTCGGCATGC
* * * * *
86282996 ATATTTGATT-CGTGTAAGACCCTGTTTGGGACAGT-GGCATGG
1 ATATGTGATTACATGTAAGACCATGTTTGAGAC-GTCGGCATGC
* * * *
86283038 ATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTGATTACATGTAAGACCATGTTTGAGACGTCGGCAT
86283079 TTTACGATAT
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
41 24 0.36
42 20 0.30
43 23 0.34
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCATGTTTGAGACGTCGGCATGC
Found at i:86292811 original size:44 final size:43
Alignment explanation
Indices: 86292716--86292811 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 43
86292706 GGAATGCTGA
*
86292716 CATTGATTTGAGATATCATGTAAGACCGTGTCTGGGACACAGG
1 CATTGATTTGAGATATCATGTAAGACCATGTCTGGGACACAGG
* * * * * *
86292759 CCTCGATTTGAGATTTACGTGTAAGACTATGTCTGGGACATAGG
1 CATTGATTTGAGATAT-CATGTAAGACCATGTCTGGGACACAGG
86292803 CATTGATTT
1 CATTGATTT
86292812 TGTGTACTAG
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
43 13 0.30
44 30 0.70
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
CATTGATTTGAGATATCATGTAAGACCATGTCTGGGACACAGG
Found at i:86298493 original size:22 final size:22
Alignment explanation
Indices: 86298468--86298517 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
86298458 CTAAGTCAAT
86298468 AGGACGGCTCAATGCTGTAGAC
1 AGGACGGCTCAATGCTGTAGAC
* *
86298490 AGGATGGCTCAATGTTGTAGAC
1 AGGACGGCTCAATGCTGTAGAC
86298512 AGGACG
1 AGGACG
86298518 ACTAAAGGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.28, C:0.18, G:0.34, T:0.20
Consensus pattern (22 bp):
AGGACGGCTCAATGCTGTAGAC
Found at i:86303662 original size:63 final size:64
Alignment explanation
Indices: 86303582--86303764 Score: 178
Period size: 63 Copynumber: 2.8 Consensus size: 64
86303572 AGACATTATG
* * *
86303582 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCT-C-AGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGA-GATAA
* * * * * *
86303645 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTTAAGGACGCCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAG-T--GTACACCATGTAGACAAGAGAGCTACGAGAT
86303710 AA
63 AA
* *
86303712 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
86303765 CGAACTATAT
Statistics
Matches: 97, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 43 0.44
64 1 0.01
65 1 0.01
66 42 0.43
67 6 0.06
68 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:86307264 original size:30 final size:30
Alignment explanation
Indices: 86307230--86307287 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
86307220 CTGAGCCTAT
86307230 GGGCAAAAGTGTAAATATGCAAAAGTTTAG
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAG
* * * *
86307260 GGGCAAAATTGTAATTTTTCAAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
86307288 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAG
Found at i:86310830 original size:22 final size:22
Alignment explanation
Indices: 86310803--86310849 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
86310793 GGAAGCACAT
*
86310803 GAGTCGTTCTCAAGCACTAGTA
1 GAGTCGTTCTCAAGCACCAGTA
86310825 GAGTCGTTCTCAAGCACCAGTA
1 GAGTCGTTCTCAAGCACCAGTA
86310847 GAG
1 GAG
86310850 GACCTGTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (22 bp):
GAGTCGTTCTCAAGCACCAGTA
Found at i:86311284 original size:112 final size:112
Alignment explanation
Indices: 86311087--86311311 Score: 450
Period size: 112 Copynumber: 2.0 Consensus size: 112
86311077 GGTATGGTGG
86311087 AGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAAACCCGATTAAAACCTTATTTTGAC
1 AGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAAACCCGATTAAAACCTTATTTTGAC
86311152 GAGATTGATAGTAGGAATGAGTATAAACTCCTCAAACCACCATGACC
66 GAGATTGATAGTAGGAATGAGTATAAACTCCTCAAACCACCATGACC
86311199 AGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAAACCCGATTAAAACCTTATTTTGAC
1 AGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAAACCCGATTAAAACCTTATTTTGAC
86311264 GAGATTGATAGTAGGAATGAGTATAAACTCCTCAAACCACCATGACC
66 GAGATTGATAGTAGGAATGAGTATAAACTCCTCAAACCACCATGACC
86311311 A
1 A
86311312 TTCACTAAAG
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 113 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (112 bp):
AGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAAACCCGATTAAAACCTTATTTTGAC
GAGATTGATAGTAGGAATGAGTATAAACTCCTCAAACCACCATGACC
Found at i:86311653 original size:42 final size:42
Alignment explanation
Indices: 86311594--86311682 Score: 178
Period size: 42 Copynumber: 2.1 Consensus size: 42
86311584 CGAGCGTGAG
86311594 ACACGCTCGTGTGGAAGAACTGTGGGTGAGCTTGTGAAAACA
1 ACACGCTCGTGTGGAAGAACTGTGGGTGAGCTTGTGAAAACA
86311636 ACACGCTCGTGTGGAAGAACTGTGGGTGAGCTTGTGAAAACA
1 ACACGCTCGTGTGGAAGAACTGTGGGTGAGCTTGTGAAAACA
86311678 ACACG
1 ACACG
86311683 GGTGTGCGAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.29, C:0.18, G:0.33, T:0.20
Consensus pattern (42 bp):
ACACGCTCGTGTGGAAGAACTGTGGGTGAGCTTGTGAAAACA
Found at i:86311757 original size:21 final size:21
Alignment explanation
Indices: 86311745--86311784 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
86311735 ACGGGTATGG
*
86311745 GGCTTGCACACACGAGCGTGA
1 GGCTTGCACACACGAGCATGA
86311766 GGCTTGCACACACGAGCAT
1 GGCTTGCACACACGAGCAT
86311785 AGGAGAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.30, G:0.30, T:0.15
Consensus pattern (21 bp):
GGCTTGCACACACGAGCATGA
Found at i:86316846 original size:19 final size:19
Alignment explanation
Indices: 86316811--86316848 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
86316801 ATCAGGGGCC
*
86316811 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATTAGGCCCA
86316830 CACG-GCCCATCTAGGCCCA
1 CACGAGCCCAT-TAGGCCCA
86316849 ACGTGGCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.21, C:0.45, G:0.24, T:0.11
Consensus pattern (19 bp):
CACGAGCCCATTAGGCCCA
Found at i:86322254 original size:80 final size:79
Alignment explanation
Indices: 86322109--86322280 Score: 188
Period size: 80 Copynumber: 2.2 Consensus size: 79
86322099 ATGTCTGGGC
* **
86322109 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
86322174 TTA-CTAAATCCGGGT
66 -TAGCTAAATCC-GGT
* * * * *
86322189 TAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGAACG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTGAACG
*
86322252 AGTAGCTATATCCGGT
64 AGTAGCTAAATCCGGT
* *
86322268 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
86322281 TACGTGATTT
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
79 17 0.22
80 55 0.71
81 6 0.08
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:86322261 original size:40 final size:40
Alignment explanation
Indices: 86322105--86322247 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
86322095 AATGATGTCT
* * * *
86322105 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
*
86322145 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
* *
86322185 GGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
86322225 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
86322248 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
39 2 0.02
40 76 0.86
41 10 0.11
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:86322499 original size:40 final size:40
Alignment explanation
Indices: 86322430--86322541 Score: 165
Period size: 40 Copynumber: 2.8 Consensus size: 40
86322420 AGCTACCGGA
*
86322430 TACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGT
1 TACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* *
86322469 TACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGT
1 TACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
*
86322509 TACTATAA-CCGGGCTATGTCCCGAAGGCATTTG
1 TACTA-AATCCGGGCTAAGTCCCGAAGGCATTTG
86322542 AACGAGTAGC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.24
40 48 0.73
41 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
Found at i:86322684 original size:294 final size:294
Alignment explanation
Indices: 86322155--86322722 Score: 1136
Period size: 294 Copynumber: 1.9 Consensus size: 294
86322145 GGACTAAGAT
86322155 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTA
86322220 TAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGGTACG
66 TAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGGTACG
86322285 TGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGAAACATCCCAACATT
131 TGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGAAACATCCCAACATT
86322350 GAGGTATGTTTCGTATGTGCTTTGAATTAGTTGAGCCCTTACAAATAAGTATTCGCTCAGTTGAT
196 GAGGTATGTTTCGTATGTGCTTTGAATTAGTTGAGCCCTTACAAATAAGTATTCGCTCAGTTGAT
86322415 AAATGAGCTACCGGATACTAATTCCGGGCTAAGC
261 AAATGAGCTACCGGATACTAATTCCGGGCTAAGC
86322449 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTA
86322514 TAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGGTACG
66 TAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGGTACG
86322579 TGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGAAACATCCCAACATT
131 TGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGAAACATCCCAACATT
86322644 GAGGTATGTTTCGTATGTGCTTTGAATTAGTTGAGCCCTTACAAATAAGTATTCGCTCAGTTGAT
196 GAGGTATGTTTCGTATGTGCTTTGAATTAGTTGAGCCCTTACAAATAAGTATTCGCTCAGTTGAT
86322709 AAATGAGCTACCGG
261 AAATGAGCTACCGG
86322723 CCTTTGGCTA
Statistics
Matches: 274, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
294 274 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (294 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTA
TAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGGTACG
TGATTTGGGAATGAATGATCTTGCTGTAAAAATTTCAGTTAATACGCTTGAAACATCCCAACATT
GAGGTATGTTTCGTATGTGCTTTGAATTAGTTGAGCCCTTACAAATAAGTATTCGCTCAGTTGAT
AAATGAGCTACCGGATACTAATTCCGGGCTAAGC
Found at i:86329957 original size:79 final size:81
Alignment explanation
Indices: 86329818--86330005 Score: 251
Period size: 79 Copynumber: 2.4 Consensus size: 81
86329808 TATTTGAATG
*
86329818 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGC
86329882 ATTTGTGCGAGTTACT
66 ATTTGTGCGAGTTACT
* * * **
86329898 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAG
86329959 GCATTTGTGCGAGTTACT
64 GCATTTGTGCGAGTTACT
* *
86329977 ATAACCGGGCTATGTCCCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
86330006 AACGAGTAGC
Statistics
Matches: 95, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 60 0.63
80 34 0.36
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGC
ATTTGTGCGAGTTACT
Found at i:86330019 original size:40 final size:40
Alignment explanation
Indices: 86329822--86330005 Score: 225
Period size: 40 Copynumber: 4.6 Consensus size: 40
86329812 TGAATGATAT
* * * *
86329822 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
86329862 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
86329902 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
86329940 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
86329981 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
86330006 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
39 36 0.28
40 82 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:86330027 original size:79 final size:79
Alignment explanation
Indices: 86329874--86330038 Score: 219
Period size: 79 Copynumber: 2.1 Consensus size: 79
86329864 GGACTAAGAT
* **
86329874 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
86329939 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
86329953 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
86330016 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
86330032 CCGAAGG
1 CCGAAGG
86330039 TACGTGATTT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.64
80 25 0.33
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:86339917 original size:15 final size:15
Alignment explanation
Indices: 86339897--86339929 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
86339887 TGCATAATCC
86339897 TATTAGTATATATAA
1 TATTAGTATATATAA
86339912 TATTAGTATATATAA
1 TATTAGTATATATAA
86339927 TAT
1 TAT
86339930 GAATGTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (15 bp):
TATTAGTATATATAA
Found at i:86340814 original size:16 final size:16
Alignment explanation
Indices: 86340789--86340836 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
86340779 ATGGAAAAAC
86340789 ACAA-TTGTTCTAAAT
1 ACAAGTTGTTCTAAAT
*
86340804 ACAAGTTGTTCCAAAT
1 ACAAGTTGTTCTAAAT
*
86340820 -CATGATTGTTCTAAAT
1 ACAAG-TTGTTCTAAAT
86340836 A
1 A
86340837 TAACTATTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 7 0.26
16 20 0.74
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (16 bp):
ACAAGTTGTTCTAAAT
Found at i:86342344 original size:28 final size:28
Alignment explanation
Indices: 86342305--86342369 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 28
86342295 ATAAAAATTA
86342305 ACCAAAATATTATAAC-TTTTTT-TTATTT
1 ACCAAAATATT-T-ACTTTTTTTATTATTT
86342333 ACCAAAATA-TTACTTTTTTTATTATTT
1 ACCAAAATATTTACTTTTTTTATTATTT
*
86342360 ACGAAAATAT
1 ACCAAAATAT
86342370 ACCAAAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 2 0.06
26 7 0.21
27 15 0.45
28 9 0.27
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (28 bp):
ACCAAAATATTTACTTTTTTTATTATTT
Found at i:86342463 original size:27 final size:27
Alignment explanation
Indices: 86342433--86342484 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
86342423 GGCCAATCAC
86342433 ATTGGCGGCACCAA-AGGTGCCAAAGTG
1 ATTGGCGGCACCAATA-GTGCCAAAGTG
86342460 ATTGGCGGCACCAATAGTGCCAAAG
1 ATTGGCGGCACCAATAGTGCCAAAG
86342485 GGGCTAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAATAGTGCCAAAGTG
Found at i:86342585 original size:18 final size:18
Alignment explanation
Indices: 86342548--86342604 Score: 78
Period size: 18 Copynumber: 3.1 Consensus size: 18
86342538 TCAACTCATT
*
86342548 TTTTTATTTAATAAATCTA
1 TTTTAATTTAATAAA-CTA
86342567 TTTTAATTTAATAAACTA
1 TTTTAATTTAATAAACTA
* *
86342585 TTCTCATTTAATAAACTA
1 TTTTAATTTAATAAACTA
86342603 TT
1 TT
86342605 AAGTAATACT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
18 21 0.60
19 14 0.40
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTTAATTTAATAAACTA
Found at i:86342856 original size:30 final size:31
Alignment explanation
Indices: 86342797--86342858 Score: 99
Period size: 33 Copynumber: 2.0 Consensus size: 31
86342787 ATTCTTTTCT
86342797 TTTTATTCCCCTTCAACTCATTTTTTTAGTAAA
1 TTTTATTCCCCTTCAACTCA--TTTTTAGTAAA
86342830 TTTTATTCCCCTTCAACTCA-TTTTAGTAA
1 TTTTATTCCCCTTCAACTCATTTTTAGTAA
86342859 TAATAAAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 9 0.31
33 20 0.69
ACGTcount: A:0.24, C:0.23, G:0.03, T:0.50
Consensus pattern (31 bp):
TTTTATTCCCCTTCAACTCATTTTTAGTAAA
Found at i:86343886 original size:16 final size:15
Alignment explanation
Indices: 86343858--86343891 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
86343848 TCTCTTCAGT
86343858 AAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAG
*
86343873 AAAAGAAAAGAAAAAG
1 AAAA-AAAAAAAAAAG
86343889 AAA
1 AAA
86343892 GAAGTGAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAG
Found at i:86345240 original size:30 final size:30
Alignment explanation
Indices: 86345189--86345249 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
86345179 TTTTTGCTGA
* *
86345189 TAATTAAATCAAATAATTTTTATTGATATT
1 TAATTAAATCAAATAATTTTTAGTAATATT
*
86345219 TAATTAAAATTAAATAA-TTTTAGTAATATT
1 TAATT-AAATCAAATAATTTTTAGTAATATT
86345249 T
1 T
86345250 GTTCTTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 17 0.63
31 10 0.37
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (30 bp):
TAATTAAATCAAATAATTTTTAGTAATATT
Found at i:86347458 original size:20 final size:21
Alignment explanation
Indices: 86347430--86347475 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
86347420 ATGTATTATT
*
86347430 AGGGACAAAATAC-CAAAAAA
1 AGGGGCAAAATACACAAAAAA
* *
86347450 AGGGGCAAATTACACATAAAA
1 AGGGGCAAAATACACAAAAAA
86347471 AGGGG
1 AGGGG
86347476 GTATTTATCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.54, C:0.13, G:0.24, T:0.09
Consensus pattern (21 bp):
AGGGGCAAAATACACAAAAAA
Found at i:86352052 original size:13 final size:14
Alignment explanation
Indices: 86352034--86352062 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
86352024 ATATAATAAA
86352034 TATTTTTAT-TTTT
1 TATTTTTATATTTT
86352047 TATTTTTATATTTT
1 TATTTTTATATTTT
86352061 TA
1 TA
86352063 AAATACTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TATTTTTATATTTT
Found at i:86352074 original size:22 final size:21
Alignment explanation
Indices: 86352049--86352094 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 21
86352039 TTATTTTTTA
86352049 TTTTTATATTTTTAAAATACTT
1 TTTTTATATTTTTAAAATA-TT
86352071 TTTTTATATTTTTAAAATATT
1 TTTTTATATTTTTAAAATATT
86352092 TTT
1 TTT
86352095 AAAATACCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTATATTTTTAAAATATT
Found at i:86352093 original size:10 final size:11
Alignment explanation
Indices: 86352054--86352100 Score: 60
Period size: 11 Copynumber: 4.3 Consensus size: 11
86352044 TTTTATTTTT
86352054 ATATTTTTAAA
1 ATATTTTTAAA
**
86352065 ATACTTTTT-TT
1 ATA-TTTTTAAA
86352076 ATATTTTTAAA
1 ATATTTTTAAA
86352087 ATATTTTTAAA
1 ATATTTTTAAA
86352098 ATA
1 ATA
86352101 CCTTTTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
10 5 0.17
11 20 0.67
12 5 0.17
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (11 bp):
ATATTTTTAAA
Found at i:86352096 original size:33 final size:33
Alignment explanation
Indices: 86352054--86352127 Score: 123
Period size: 33 Copynumber: 2.2 Consensus size: 33
86352044 TTTTATTTTT
86352054 ATATTTTTAAAATA-CTTTTTTTATATTTTTAAA
1 ATATTTTTAAAATACCTTTTTTTAT-TTTTTAAA
86352087 ATATTTTTAAAATACCTTTTTTTATTTTTTAAA
1 ATATTTTTAAAATACCTTTTTTTATTTTTTAAA
*
86352120 ATTTTTTT
1 ATATTTTT
86352128 GGTGTTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
33 29 0.74
34 10 0.26
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (33 bp):
ATATTTTTAAAATACCTTTTTTTATTTTTTAAA
Found at i:86353465 original size:17 final size:18
Alignment explanation
Indices: 86353443--86353484 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
86353433 CCGCCTCACA
*
86353443 ATCAGATACAACAGAA-T
1 ATCAGATAAAACAGAATT
*
86353460 ATCAGATAAAATAGAATT
1 ATCAGATAAAACAGAATT
86353478 ATCAGAT
1 ATCAGAT
86353485 GCCAAATACC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.24
Consensus pattern (18 bp):
ATCAGATAAAACAGAATT
Found at i:86360081 original size:3 final size:3
Alignment explanation
Indices: 86360073--86360107 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
86360063 ATGTTTCCAC
* *
86360073 TAT TAT TAT CAT CAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
86360108 GTTTTTGCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:86364630 original size:35 final size:35
Alignment explanation
Indices: 86364589--86364673 Score: 152
Period size: 35 Copynumber: 2.4 Consensus size: 35
86364579 GATTTTCTTC
86364589 CAAATTATTATTCATTCATTCATAATCATATGGTA
1 CAAATTATTATTCATTCATTCATAATCATATGGTA
*
86364624 CAAATTATTATTCATTCATTCGTAATCATATGGTA
1 CAAATTATTATTCATTCATTCATAATCATATGGTA
*
86364659 CAAATAATTATTCAT
1 CAAATTATTATTCAT
86364674 GAATTTATAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (35 bp):
CAAATTATTATTCATTCATTCATAATCATATGGTA
Found at i:86365349 original size:22 final size:23
Alignment explanation
Indices: 86365324--86365373 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
86365314 AAAAAAAAAG
86365324 AAAAATGAT-CAAAGTCAAAAT-A
1 AAAAATGATCCAAA-TCAAAATGA
* *
86365346 AAAAGTTATCCAAATCAAAATGA
1 AAAAATGATCCAAATCAAAATGA
86365369 AAAAA
1 AAAAA
86365374 GAAGGAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.64, C:0.10, G:0.08, T:0.18
Consensus pattern (23 bp):
AAAAATGATCCAAATCAAAATGA
Found at i:86366202 original size:7 final size:7
Alignment explanation
Indices: 86366182--86366244 Score: 67
Period size: 7 Copynumber: 8.9 Consensus size: 7
86366172 AAAAAAAGAG
86366182 AAAATGA
1 AAAATGA
* *
86366189 GAGATGA
1 AAAATGA
86366196 AAAATG-
1 AAAATGA
86366202 AAAATGA
1 AAAATGA
86366209 AAAATGA
1 AAAATGA
86366216 AAAATGAAA
1 AAAATG--A
86366225 AAAATGA
1 AAAATGA
86366232 AAAA-GTA
1 AAAATG-A
86366239 AAAATG
1 AAAATG
86366245 GAGAGGCTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
6 7 0.15
7 32 0.68
8 1 0.02
9 7 0.15
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.14
Consensus pattern (7 bp):
AAAATGA
Found at i:86366204 original size:20 final size:20
Alignment explanation
Indices: 86366181--86366225 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
86366171 AAAAAAAAGA
* *
86366181 GAAAATGAGAGATGAAAAAT
1 GAAAATGAAAAATGAAAAAT
86366201 GAAAATGAAAAATGAAAAAT
1 GAAAATGAAAAATGAAAAAT
86366221 GAAAA
1 GAAAA
86366226 AAATGAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAAATGAAAAAT
Found at i:86366241 original size:14 final size:13
Alignment explanation
Indices: 86366174--86366244 Score: 61
Period size: 14 Copynumber: 5.0 Consensus size: 13
86366164 CAATTCAAAA
86366174 AAAAAGAGAAAATG
1 AAAAAGA-AAAATG
* *
86366188 AGAGATGAAAAATG
1 A-AAAAGAAAAATG
*
86366202 AAAATGAAAAATG
1 AAAAAGAAAAATG
86366215 AAAAATGAAAAAAATG
1 AAAAA-G--AAAAATG
86366231 AAAAAGTAAAAATG
1 AAAAAG-AAAAATG
86366245 GAGAGGCTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
13 15 0.31
14 16 0.33
15 5 0.10
16 12 0.25
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.13
Consensus pattern (13 bp):
AAAAAGAAAAATG
Found at i:86366242 original size:16 final size:16
Alignment explanation
Indices: 86366195--86366235 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
86366185 ATGAGAGATG
86366195 AAAAATG-AAAATG--
1 AAAAATGAAAAATGAA
86366208 AAAAATGAAAAATGAA
1 AAAAATGAAAAATGAA
86366224 AAAAATGAAAAA
1 AAAAATGAAAAA
86366236 GTAAAAATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.28
14 6 0.24
16 12 0.48
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (16 bp):
AAAAATGAAAAATGAA
Found at i:86367723 original size:50 final size:50
Alignment explanation
Indices: 86367604--86367725 Score: 136
Period size: 50 Copynumber: 2.4 Consensus size: 50
86367594 GCGGAGCAGC
* * * *
86367604 TAAAGTCACATCGGTGAATATTGCTTCCCCGACATTGCAGTTAAAAAGCT
1 TAAAGCCACATCGGTGAATCTTACTTCCCCGACATTGCAGTTAAAAAGAT
* * * * * * * *
86367654 TAAAACTACAACAGCGAATCTTATTTCCCTGGCATTGCAGTTAAAAAGAT
1 TAAAGCCACATCGGTGAATCTTACTTCCCCGACATTGCAGTTAAAAAGAT
86367704 TAAAGCCACATCGGTGAATCTT
1 TAAAGCCACATCGGTGAATCTT
86367726 TTCTCTCGGC
Statistics
Matches: 55, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (50 bp):
TAAAGCCACATCGGTGAATCTTACTTCCCCGACATTGCAGTTAAAAAGAT
Found at i:86368616 original size:23 final size:20
Alignment explanation
Indices: 86368590--86368634 Score: 54
Period size: 23 Copynumber: 2.1 Consensus size: 20
86368580 ATATAGATCC
86368590 TTTTATTTTATTATATGATATTA
1 TTTTATTTT-TT-TATG-TATTA
*
86368613 TTTTATGTTTTTATGTATTA
1 TTTTATTTTTTTATGTATTA
86368633 TT
1 TT
86368635 ACTTATTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 4 0.19
22 2 0.10
23 8 0.38
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (20 bp):
TTTTATTTTTTTATGTATTA
Found at i:86373855 original size:25 final size:25
Alignment explanation
Indices: 86373802--86373862 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
86373792 CACAGCCTAT
* * *
86373802 GTGAGCAATTACAGTTGCAACTCGT
1 GTGAGCAATTATAGTTACAACTCGA
* *
86373827 GTGAGCAATTATAGTTACAGCTTGA
1 GTGAGCAATTATAGTTACAACTCGA
86373852 GTGAGC-ATTAT
1 GTGAGCAATTAT
86373863 TCCCGTGTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (25 bp):
GTGAGCAATTATAGTTACAACTCGA
Found at i:86373943 original size:27 final size:27
Alignment explanation
Indices: 86373905--86373958 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
86373895 CATCAAGTGG
86373905 AAAAATCAATATA-TGAAATGGTTATAT
1 AAAAATCAATATATTG-AATGGTTATAT
*
86373932 AAAAAT-AGATATATTGAATGTTTATAT
1 AAAAATCA-ATATATTGAATGGTTATAT
86373959 GAATCAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 1 0.04
27 21 0.88
28 2 0.08
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.37
Consensus pattern (27 bp):
AAAAATCAATATATTGAATGGTTATAT
Found at i:86374057 original size:13 final size:12
Alignment explanation
Indices: 86374039--86374072 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
86374029 AAGGGGACAT
86374039 TTGAAATGAAAA
1 TTGAAATGAAAA
86374051 CTTGAAATGAAAA
1 -TTGAAATGAAAA
86374064 TATGAAATG
1 T-TGAAATG
86374073 TTAAATGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 1 0.05
13 19 0.95
ACGTcount: A:0.53, C:0.03, G:0.18, T:0.26
Consensus pattern (12 bp):
TTGAAATGAAAA
Found at i:86377220 original size:18 final size:18
Alignment explanation
Indices: 86377186--86377220 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
86377176 AAAAATCATA
86377186 AATAATTTAAAAGATTTC
1 AATAATTTAAAAGATTTC
*
86377204 AATAATTTAAAATATTT
1 AATAATTTAAAAGATTT
86377221 GTAAACTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
AATAATTTAAAAGATTTC
Found at i:86389479 original size:21 final size:21
Alignment explanation
Indices: 86389453--86389493 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
86389443 AAAGCTAATT
86389453 TGTTTAGGTTTAAATGGTTGA
1 TGTTTAGGTTTAAATGGTTGA
* * *
86389474 TGTTTATGTTTGAATTGTTG
1 TGTTTAGGTTTAAATGGTTG
86389494 TTTCAATAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.54
Consensus pattern (21 bp):
TGTTTAGGTTTAAATGGTTGA
Found at i:86407710 original size:25 final size:24
Alignment explanation
Indices: 86407665--86407712 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
86407655 CAAAAGTACA
*
86407665 AAAAATAAAATTAAAATTATTTTT
1 AAAAATAAAATTAAAAATATTTTT
86407689 AAAAATGAAAA-TAGAAAATATTTT
1 AAAAAT-AAAATTA-AAAATATTTT
86407713 CAAGAATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (24 bp):
AAAAATAAAATTAAAAATATTTTT
Found at i:86420319 original size:27 final size:27
Alignment explanation
Indices: 86420296--86420555 Score: 331
Period size: 27 Copynumber: 9.6 Consensus size: 27
86420286 TTAGTTTACC
86420296 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
86420323 AAATCACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
86420350 AAATCACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
86420377 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
86420404 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
86420431 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
86420458 AAATTACCAAAATATCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
86420485 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
86420512 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
86420539 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
86420556 TCGACCTGTA
Statistics
Matches: 197, Mismatches: 36, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 197 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:86420371 original size:54 final size:54
Alignment explanation
Indices: 86420296--86420556 Score: 380
Period size: 54 Copynumber: 4.8 Consensus size: 54
86420286 TTAGTTTACC
*
86420296 AAATTACCAAAATACCCCTGGTTTGTAAAATCACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
86420350 AAATCACCAAAATACCTCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* *
86420404 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
86420458 AAATTACCAAAATATCCCTGGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACT-AAAATACCCTTGGTTTATA
* * *
86420512 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCT
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCT
86420557 CGACCTGTAA
Statistics
Matches: 184, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
53 1 0.01
54 182 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:86420566 original size:54 final size:54
Alignment explanation
Indices: 86420296--86420625 Score: 362
Period size: 54 Copynumber: 6.1 Consensus size: 54
86420286 TTAGTTTACC
* *
86420296 AAATTACCAAAATACCCCTGGTTTGTAAAATCACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
* * * * *
86420350 AAATCACCAAAATACCTCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
*
86420404 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC-TTGATTTATA
* * *
86420458 AAATTACCAAAATATCCCTGGTTTGTAAAATTA-TCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACT-AAAATACCCTTGA-TTTATA
* * * * ** *
86420512 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
*** ** * * *
86420566 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACTAAAATACCCTTGATTTATA
86420620 AAATTA
1 AAATTA
86420626 TCGTTTTACC
Statistics
Matches: 234, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
53 6 0.03
54 223 0.95
55 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGATTTATA
Found at i:86420566 original size:81 final size:80
Alignment explanation
Indices: 86420296--86420625 Score: 326
Period size: 81 Copynumber: 4.1 Consensus size: 80
86420286 TTAGTTTACC
* * * * *
86420296 AAATTACCAAAATACCCCTGGTTTGTAAAATCA-CTAAAATACCCTTGGTTTATAAAATCACCAA
1 AAATTACCAAAATA-CCCTGGTTTGTAAAATTATC-AAAATACCCCTGATTTGTAAAATTACCAA
* *
86420360 AATACCTCTGGTTTGTA
64 AATACCCCTGATTTGTA
** * *
86420377 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAA
1 AAATTACCAAAATACCC-TGGTTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTACCAAA
* *
86420442 ATACCCTTTG-TTTATA
65 ATACCC-CTGATTTGTA
86420458 AAATTACCAAAATATCCCTGGTTTGTAAAATTATCAAAATACCCCT-AGTTTGTAAAATTACCAA
1 AAATTACCAAAATA-CCCTGGTTTGTAAAATTATCAAAATACCCCTGA-TTTGTAAAATTACCAA
*
86420522 AATACCCCTGATTTGTG
64 AATACCCCTGATTTGTA
** *** ** *
86420539 AAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAA
1 AAATTACCAAAATACCCT-GGTTTGTAAAATTATCAAAATACCCCT-GATTTGTAAAATTACCAA
* * **
86420603 AGTACCCTTGATTTACA
64 AATACCCCTGATTTGTA
86420620 AAATTA
1 AAATTA
86420626 TCGTTTTACC
Statistics
Matches: 209, Mismatches: 31, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
80 14 0.07
81 188 0.90
82 7 0.03
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
AAATTACCAAAATACCCTGGTTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTACCAAAA
TACCCCTGATTTGTA
Found at i:86420608 original size:27 final size:27
Alignment explanation
Indices: 86420296--86420625 Score: 269
Period size: 27 Copynumber: 12.2 Consensus size: 27
86420286 TTAGTTTACC
*
86420296 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * *
86420323 AAATCACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
86420350 AAATCACCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
86420377 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
86420404 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
86420431 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
*
86420458 AAATTACCAAAATATCCCT-GGTTTGTA
1 AAATTACCAAAATA-CCCTCGATTTGTA
* *
86420485 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
86420512 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** **
86420539 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
86420566 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
86420593 AAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
86420620 AAATTA
1 AAATTA
86420626 TCGTTTTACC
Statistics
Matches: 250, Mismatches: 41, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.03
27 234 0.94
28 9 0.04
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:86420685 original size:27 final size:27
Alignment explanation
Indices: 86420655--86420904 Score: 310
Period size: 27 Copynumber: 9.3 Consensus size: 27
86420645 CAAAATTACT
* * * *
86420655 GAAATACCCTTATAGGGTTGAAATA-C
1 GAAATACCCCTGTAGGGTAGAATTATC
* *
86420681 AGAAATACCCCTGTAGGATA-AAATATC
1 -GAAATACCCCTGTAGGGTAGAATTATC
* *
86420708 GAAATACCCTTTTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTATC
*
86420735 GCAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTATC
*
86420762 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTATC
* *
86420789 GAAATACCCCTGTAAGATAGAATTA-C
1 GAAATACCCCTGTAGGGTAGAATTATC
*
86420815 TGAAATACCCCTATAGGGTAGAATTATC
1 -GAAATACCCCTGTAGGGTAGAATTATC
86420843 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTATC
*
86420870 -ACAATACCCCTGTAGGGTAGAATTACC
1 GA-AATACCCCTGTAGGGTAGAATTATC
*
86420897 GAGATACC
1 GAAATACC
86420905 TTGTGGGGGA
Statistics
Matches: 196, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
26 23 0.12
27 171 0.87
28 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTATC
Found at i:86421602 original size:27 final size:27
Alignment explanation
Indices: 86421572--86421673 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
86421562 ATTCTGTTAA
* *
86421572 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
86421599 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
86421626 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
86421653 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
86421674 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:86421847 original size:6 final size:6
Alignment explanation
Indices: 86421832--86421928 Score: 65
Period size: 6 Copynumber: 15.8 Consensus size: 6
86421822 ATTCTGTTAC
* * * *
86421832 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTAATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
86421881 CTGATT CTG-TCAC CTAATT CTGATT TTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
86421929 AATGTTTCTT
Statistics
Matches: 70, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
5 4 0.06
6 58 0.83
7 6 0.09
8 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:86421855 original size:31 final size:31
Alignment explanation
Indices: 86421820--86421944 Score: 146
Period size: 31 Copynumber: 4.1 Consensus size: 31
86421810 TTCTAATTTT
*
86421820 TGATTCTGTTACCTGATACTGATTCTGATTT
1 TGATTCTGTTACCTGATACTGATTCTGATTC
*
86421851 TGATTCTGTTACCTGATACTAATTCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* * * *
86421882 TGATTCTGTCACCTAATTCTGATTTTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* * *
86421913 TGATTCTAGTT--CTGATAATGTTTCTTATTC
1 TGATTCT-GTTACCTGATACTGATTCTGATTC
86421943 TG
1 TG
86421945 TAATGGGTTA
Statistics
Matches: 79, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
30 15 0.19
31 62 0.78
32 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
TGATTCTGTTACCTGATACTGATTCTGATTC
Found at i:86424775 original size:23 final size:23
Alignment explanation
Indices: 86424746--86424800 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
86424736 AACTTTTTCA
86424746 AAAATAAAAAC-AAAAATGAAAAT
1 AAAATAAAAACTAAAAAT-AAAAT
* **
86424769 AATATAATTACTAAAAATAAAAT
1 AAAATAAAAACTAAAAATAAAAT
86424792 AAAATAAAA
1 AAAATAAAA
86424801 GTAAAGAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (23 bp):
AAAATAAAAACTAAAAATAAAAT
Found at i:86432951 original size:23 final size:23
Alignment explanation
Indices: 86432925--86432970 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
86432915 CATGCATTAT
86432925 GAATTGGTTTAGGTACCTATGTA
1 GAATTGGTTTAGGTACCTATGTA
86432948 GAATTGGTTTAGGTACCTATGTA
1 GAATTGGTTTAGGTACCTATGTA
86432971 ATTGGGTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.39
Consensus pattern (23 bp):
GAATTGGTTTAGGTACCTATGTA
Found at i:86435641 original size:16 final size:17
Alignment explanation
Indices: 86435616--86435647 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
86435606 TAAAAAAAAA
86435616 TATTTGGTTGGTTAAAT
1 TATTTGGTTGGTTAAAT
86435633 TATTT-GTTGGTTAAA
1 TATTTGGTTGGTTAAA
86435648 AATCCAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (17 bp):
TATTTGGTTGGTTAAAT
Found at i:86444013 original size:25 final size:25
Alignment explanation
Indices: 86443972--86444044 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
86443962 AGTTCTTATG
* * * * *
86443972 AGCTTATCGATACTCAGCTTGTATA
1 AGCTTATCGTTATTCAGCTCGGAAA
86443997 AGCTTATCGTTATTCAGCTCGGAAA
1 AGCTTATCGTTATTCAGCTCGGAAA
* *
86444022 AGCTAACCGTTATTCAGCTCGGA
1 AGCTTATCGTTATTCAGCTCGGA
86444045 GGATCTTACC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (25 bp):
AGCTTATCGTTATTCAGCTCGGAAA
Found at i:86444055 original size:25 final size:25
Alignment explanation
Indices: 86443996--86444066 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
86443986 CAGCTTGTAT
*
86443996 AAGCTTATCGTTATTCAGCTCGGAA
1 AAGCTTACCGTTATTCAGCTCGGAA
* *
86444021 AAGCTAACCGTTATTCAGCTCGGAG
1 AAGCTTACCGTTATTCAGCTCGGAA
* * *
86444046 GATCTTACCGTT-TACAGCTCG
1 AAGCTTACCGTTATTCAGCTCG
86444067 TATGAGCAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 8 0.21
25 31 0.79
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (25 bp):
AAGCTTACCGTTATTCAGCTCGGAA
Found at i:86445194 original size:19 final size:20
Alignment explanation
Indices: 86445159--86445202 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
86445149 AGGGACTAAA
*
86445159 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAGTTCTAAAATTTG
*
86445179 ATGAAAA-TTCTAAAATTTT
1 ATGAAAAGTTCTAAAATTTG
86445198 ATGAA
1 ATGAA
86445203 TACATGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGAAAAGTTCTAAAATTTG
Found at i:86495342 original size:50 final size:51
Alignment explanation
Indices: 86495267--86495492 Score: 223
Period size: 50 Copynumber: 4.5 Consensus size: 51
86495257 TGAATACAAG
**
86495267 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAT-ACTGTTAAGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATGACTGTTAAGTCACA
* * ** *
86495317 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-ATGACTGTTAAGTCACA
* * * * *
86495368 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCA-GA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATGACT-GTTAAGTCACA
* * *
86495418 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-TGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATGACTGTTAAGTCACA
* *
86495467 TGTGTAGTACTAAGTACAGACTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
86495493 TGCATATCAG
Statistics
Matches: 147, Mismatches: 21, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 31 0.21
50 73 0.50
51 33 0.22
52 4 0.03
53 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATGACTGTTAAGTCACA
Found at i:86495501 original size:99 final size:100
Alignment explanation
Indices: 86495317--86495504 Score: 229
Period size: 99 Copynumber: 1.9 Consensus size: 100
86495307 TTAAGTCGTA
* *
86495317 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTC-ATGACTTCGATCACATGTGTAGTACTAAG
* **
86495382 TGCAAGCTACTACGTGTATCAGATGGTGAGGTCACG
65 TACAAGCTACTACGCATATCAGATGGTGAGGTCACG
* * * * *
86495418 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-TGATTGTTGGTCGCATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCATGACT-TCGATCACATGTGTAGTACTAAG
*
86495481 TAC-AGACTACTATGCATATCAGAT
65 TACAAG-CTACTACGCATATCAGAT
86495505 AGCTTCGGCT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
98 6 0.08
99 36 0.49
100 1 0.01
101 31 0.42
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCATGACTTCGATCACATGTGTAGTACTAAGT
ACAAGCTACTACGCATATCAGATGGTGAGGTCACG
Found at i:86500823 original size:29 final size:29
Alignment explanation
Indices: 86500748--86500826 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
86500738 CTTAATAATC
* *
86500748 AACCACGCACACTTAGTACCATGTACTTTA
1 AACC-CGCACACTTAGTGCCATGCACTTTA
*
86500778 AACTCGCACACTTAGTGCCATGCA-TTTCA
1 AACCCGCACACTTAGTGCCATGCACTTT-A
*
86500807 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
86500827 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTTA
Found at i:86504695 original size:27 final size:27
Alignment explanation
Indices: 86504665--86504768 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
86504655 CAAAATCATT
86504665 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
86504692 GAAATACCCCTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
86504719 GAAATACCCCTGTAGGGTGGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
86504746 -AAGATACCCTTGTGGGGTA-AATT
1 GAA-ATACCCCTGTAGGGTAGAATT
86504769 TACTATTTTG
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
26 6 0.09
27 61 0.91
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:86505225 original size:25 final size:25
Alignment explanation
Indices: 86505194--86505263 Score: 70
Period size: 27 Copynumber: 2.7 Consensus size: 25
86505184 GATGACTTTG
*
86505194 TGCCACATATTCTGTTAAGTGGCTT
1 TGCCACATATTCTGTTAAGTGGCTC
**
86505219 TGCCACAT-TATCTGATTCTGGTGGCTC
1 TGCCACATAT-TCTG-TT-AAGTGGCTC
86505246 TGCCACAATATTCTGTTA
1 TGCCAC-ATATTCTGTTA
86505264 TTAGCAGCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
24 1 0.03
25 12 0.33
26 2 0.06
27 14 0.39
28 6 0.17
29 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.39
Consensus pattern (25 bp):
TGCCACATATTCTGTTAAGTGGCTC
Found at i:86505411 original size:25 final size:25
Alignment explanation
Indices: 86505383--86505444 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
86505373 CATTCACGTT
*
86505383 CTGATTCTGATTATGTTACCTAATA
1 CTGATTCTGATTATGTCACCTAATA
* *
86505408 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTATGTCACCTAATA
86505433 CTGATTCTGATT
1 CTGATTCTGATT
86505445 TTGATTCTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTATGTCACCTAATA
Found at i:86505451 original size:12 final size:12
Alignment explanation
Indices: 86505434--86505464 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
86505424 CACCTAATTC
*
86505434 TGATTCTGATTT
1 TGATTCTCATTT
86505446 TGATTCTCATTT
1 TGATTCTCATTT
86505458 TGATTCT
1 TGATTCT
86505465 AGTTCTGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.13, G:0.13, T:0.58
Consensus pattern (12 bp):
TGATTCTCATTT
Found at i:86507533 original size:27 final size:27
Alignment explanation
Indices: 86507431--86507535 Score: 88
Period size: 27 Copynumber: 3.9 Consensus size: 27
86507421 AATACTTTAG
* *
86507431 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTATTGAAATACCCTCGA
* ** ** *
86507458 CTTGTAAAATTA-CCAAAGTACCCCCGA
1 TTTACAAAATTATTGAAA-TACCCTCGA
**
86507485 TTTACAAAATTATT-AGTTTACCCTCGA
1 TTTACAAAATTATTGA-AATACCCTCGA
86507512 TTTACAAAATTATTGAAATACCCT
1 TTTACAAAATTATTGAAATACCCT
86507536 TGTAGGGTAG
Statistics
Matches: 58, Mismatches: 16, Indels: 8
0.71 0.20 0.10
Matches are distributed among these distances:
26 3 0.05
27 54 0.93
28 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTATTGAAATACCCTCGA
Found at i:86507549 original size:27 final size:27
Alignment explanation
Indices: 86507526--86507712 Score: 245
Period size: 27 Copynumber: 7.0 Consensus size: 27
86507516 CAAAATTATT
*
86507526 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
86507553 AAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
86507580 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
86507607 GAAATA-CCTCTGTAGGGTAGAATTACC
1 GAAATACCCT-TGTAGGGTAGAATTACC
*
86507634 GAAATACCCTTGTAGGGT-GAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
86507660 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
86507687 -AAGATACCCTTTTAGGGTAAAATTAC
1 GAA-ATACCCTTGTAGGGTAGAATTAC
86507713 TATTTTGCCT
Statistics
Matches: 139, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 28 0.20
27 108 0.78
28 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:86507679 original size:53 final size:54
Alignment explanation
Indices: 86507526--86507709 Score: 275
Period size: 54 Copynumber: 3.4 Consensus size: 54
86507516 CAAAATTATT
* ** *
86507526 GAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
*
86507580 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCTCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
*
86507634 GAAATACCCTTGTAGGGT-GAAATACCGAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
*
86507687 -AAGATACCCTTTTAGGGTA-AAAT
1 GAA-ATACCCTTGTAGGGTAGAAAT
86507710 TACTATTTTG
Statistics
Matches: 120, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
52 2 0.02
53 51 0.43
54 67 0.56
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (54 bp):
GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
Found at i:86508115 original size:20 final size:20
Alignment explanation
Indices: 86508075--86508115 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
86508065 TGTGTGTCGT
* *
86508075 TATTGTGGGCTTCGTATCGA
1 TATTATGGGCTTCGTACCGA
*
86508095 TATTATGGGCTTCGTGCCGA
1 TATTATGGGCTTCGTACCGA
86508115 T
1 T
86508116 TATAGACCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.17, G:0.29, T:0.39
Consensus pattern (20 bp):
TATTATGGGCTTCGTACCGA
Found at i:86508335 original size:6 final size:6
Alignment explanation
Indices: 86508326--86508449 Score: 103
Period size: 6 Copynumber: 20.3 Consensus size: 6
86508316 TTGCATTCAC
* * * *
86508326 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTA ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
86508376 ATTCTG ATTCTG ATTCTG ACTT-TG ATTCTG ATTCTG ATTCTG ATTCTA
1 ATTCTG ATTCTG ATTCTG A-TTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
86508424 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
86508450 AATGTTTCTT
Statistics
Matches: 95, Mismatches: 13, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
5 6 0.06
6 79 0.83
7 8 0.08
8 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:86508357 original size:25 final size:24
Alignment explanation
Indices: 86508326--86508417 Score: 114
Period size: 25 Copynumber: 3.8 Consensus size: 24
86508316 TTGCATTCAC
86508326 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTG-TACCTG
* * *
86508351 ATACTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGT-ACCTG
*
86508376 ATTCTGATTCTGATTCTG-ACTTTG
1 ATTCTGATTCTGATTCTGTAC-CTG
86508400 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
86508418 ATTCTAATTC
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.03
24 20 0.34
25 36 0.62
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.47
Consensus pattern (24 bp):
ATTCTGATTCTGATTCTGTACCTG
Done.