Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 257 of 284
Found at i:86512872 original size:45 final size:45
Alignment explanation
Indices: 86512761--86512879 Score: 127
Period size: 45 Copynumber: 2.6 Consensus size: 45
86512751 CACTAGGAAT
* * *
86512761 TTAGAAATCCGAGCTCATTGAGTTGGTCCGAGTTTGTGATATATG
1 TTAGAAATCTGAGCTCATTGAGTTGGTCCAAATTTGTGATATATG
* **
86512806 TTAGAAATCTGAACTTGTTGAGTTGGT-CAAATTTCGTGATATATG
1 TTAGAAATCTGAGCTCATTGAGTTGGTCCAAATTT-GTGATATATG
*
86512851 -T-GAAGCATCTGAGCTCATTGAGTTCGTCC
1 TTAGAA--ATCTGAGCTCATTGAGTTGGTCC
86512880 GAGTTCATTA
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
43 3 0.05
44 6 0.10
45 50 0.83
46 1 0.02
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.36
Consensus pattern (45 bp):
TTAGAAATCTGAGCTCATTGAGTTGGTCCAAATTTGTGATATATG
Found at i:86515665 original size:15 final size:15
Alignment explanation
Indices: 86515645--86515688 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
86515635 ATTATGATAT
*
86515645 TGTATCTTGGATTTG
1 TGTATCTTGGATTTC
**
86515660 TGTATCTCAGATTTC
1 TGTATCTTGGATTTC
*
86515675 TTTATCTTGGATTT
1 TGTATCTTGGATTT
86515689 TTTTGTTCTG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.16, C:0.11, G:0.18, T:0.55
Consensus pattern (15 bp):
TGTATCTTGGATTTC
Found at i:86520212 original size:45 final size:45
Alignment explanation
Indices: 86520162--86520264 Score: 118
Period size: 45 Copynumber: 2.3 Consensus size: 45
86520152 AACGGTAGCA
* * * *
86520162 GTAACAGTAATAGCAACAGTATTCAACACATAAAGTG-CTGAATCT
1 GTAACAGTAACAGCAACAGGATTCAACACACAAAGTGTC-GAATCG
* * *
86520207 GTAACAGTAACGGTAACAGGATTCGACACACAAAGTGTCGAATCG
1 GTAACAGTAACAGCAACAGGATTCAACACACAAAGTGTCGAATCG
*
86520252 GTAATAGTAACAG
1 GTAACAGTAACAG
86520265 TAATAGTAAC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
45 47 0.98
46 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.21
Consensus pattern (45 bp):
GTAACAGTAACAGCAACAGGATTCAACACACAAAGTGTCGAATCG
Found at i:86520269 original size:12 final size:12
Alignment explanation
Indices: 86520252--86520279 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
86520242 TGTCGAATCG
86520252 GTAATAGTAACA
1 GTAATAGTAACA
86520264 GTAATAGTAACA
1 GTAATAGTAACA
86520276 GTAA
1 GTAA
86520280 CATAAGTGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.18, T:0.25
Consensus pattern (12 bp):
GTAATAGTAACA
Found at i:86520530 original size:21 final size:21
Alignment explanation
Indices: 86520465--86520532 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
86520455 AATTCATTAC
* *
86520465 TTCAGTAATTTCACAGTTCAA
1 TTCAGTAACTTCACAATTCAA
* * *
86520486 TGCAGTACACATAACAA-T--A
1 TTCAGTA-ACTTCACAATTCAA
86520505 TTCAGTAACTTCACAATTCAA
1 TTCAGTAACTTCACAATTCAA
86520526 TTCAGTA
1 TTCAGTA
86520533 TCAGTCTCGA
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
21 15 0.43
22 5 0.14
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (21 bp):
TTCAGTAACTTCACAATTCAA
Found at i:86521435 original size:3 final size:3
Alignment explanation
Indices: 86521427--86521464 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
86521417 TGTTTTATTC
86521427 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
86521465 TCTTTTACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:86521519 original size:26 final size:24
Alignment explanation
Indices: 86521501--86521558 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
86521491 ATTTATTAAT
*
86521501 TTACATTTGTATTCATATTCATTA
1 TTACACTTGTATTCATATTCATTA
*
86521525 TTACACTTGTATTTA-ATT-ATTA
1 TTACACTTGTATTCATATTCATTA
86521547 CCTTACACTTGT
1 --TTACACTTGT
86521559 CACTCCTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 4 0.13
23 3 0.10
24 23 0.77
ACGTcount: A:0.28, C:0.16, G:0.05, T:0.52
Consensus pattern (24 bp):
TTACACTTGTATTCATATTCATTA
Found at i:86523799 original size:62 final size:62
Alignment explanation
Indices: 86523702--86523825 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
86523692 ACAATAAAAT
86523702 CTTTTCCTAATTCTGGTAAAGTCAAAACTGGTGCCTCTGTCAACATCTGCTTCAGTTTCATA
1 CTTTTCCTAATTCTGGTAAAGTCAAAACTGGTGCCTCTGTCAACATCTGCTTCAGTTTCATA
86523764 CTTTTCCTAATTCTGGTAAAGTCAAAACTGGTGCCTCTGTCAACATCTGCTTCAGTTTCATA
1 CTTTTCCTAATTCTGGTAAAGTCAAAACTGGTGCCTCTGTCAACATCTGCTTCAGTTTCATA
86523826 AAGCTTTCTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (62 bp):
CTTTTCCTAATTCTGGTAAAGTCAAAACTGGTGCCTCTGTCAACATCTGCTTCAGTTTCATA
Found at i:86542578 original size:6 final size:6
Alignment explanation
Indices: 86542555--86542607 Score: 88
Period size: 6 Copynumber: 8.8 Consensus size: 6
86542545 GAACAATAAT
* *
86542555 CAGTAA CGGTAG CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA
1 CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA
86542603 CAGTA
1 CAGTA
86542608 TTCAACACAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (6 bp):
CAGTAA
Found at i:86542638 original size:45 final size:45
Alignment explanation
Indices: 86542587--86542691 Score: 167
Period size: 45 Copynumber: 2.3 Consensus size: 45
86542577 AACAGTAACA
* *
86542587 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTG-CTGAATCT
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAATGTC-GAATCG
*
86542632 GTAACAGTAACGGTAACAGTATTCAACACACAAAATGTCGAATCG
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAATGTCGAATCG
86542677 GTAACAGTAACAGTA
1 GTAACAGTAACAGTA
86542692 GTCGGCACAT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
45 54 0.98
46 1 0.02
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAACACACAAAATGTCGAATCG
Found at i:86543551 original size:30 final size:30
Alignment explanation
Indices: 86543515--86543575 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
86543505 TTCCCGAGCC
*
86543515 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
86543545 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
86543575 T
1 T
86543576 GTTTTAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:86545698 original size:23 final size:23
Alignment explanation
Indices: 86545655--86545698 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
86545645 ACCAGCTCCG
* **
86545655 GCTGAAGGGGTGGTGTGAACTCT
1 GCTGAAGGGGTAGTGCCAACTCT
86545678 GCTGAAGGGGTAGTGCCAACT
1 GCTGAAGGGGTAGTGCCAACT
86545699 GAAAATCCAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.20, C:0.16, G:0.41, T:0.23
Consensus pattern (23 bp):
GCTGAAGGGGTAGTGCCAACTCT
Found at i:86550407 original size:39 final size:39
Alignment explanation
Indices: 86550290--86550707 Score: 551
Period size: 39 Copynumber: 10.6 Consensus size: 39
86550280 GCTCCTCGTT
* *
86550290 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
86550330 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCG-GGCTTAGCCCGGAATTAGTATCTCGCA
86550370 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
86550409 CAAATGCCTTTGGGCTTAGCCCGAAATTAGTATCTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86550448 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
86550487 CAAATGCCTTTGGGCTTAGCCCGAAATTAGTATCTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86550526 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
86550565 CAAATGCCTTTGGGCTTAGCCCGAAATTAGTATCTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86550604 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
86550643 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
86550684 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
86550708 CATCATTCAA
Statistics
Matches: 339, Mismatches: 31, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
39 271 0.80
40 56 0.17
41 12 0.04
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:86564221 original size:46 final size:46
Alignment explanation
Indices: 86564149--86564966 Score: 1611
Period size: 46 Copynumber: 17.8 Consensus size: 46
86564139 AACTAGGCAT
*
86564149 CCGAACTCGTTGAGTTGAGT-TCGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCGAACGC
86564195 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564241 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564287 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564333 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564379 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564425 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564471 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564517 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564563 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564609 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564655 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564701 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564747 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564793 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564839 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564885 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
86564931 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
86564967 GCGGGTTACA
Statistics
Matches: 770, Mismatches: 1, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
46 769 1.00
47 1 0.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
Found at i:86565496 original size:65 final size:65
Alignment explanation
Indices: 86565410--86565535 Score: 216
Period size: 65 Copynumber: 1.9 Consensus size: 65
86565400 TTGAAGATTC
*
86565410 GTCCACACTATCTGAAAGCCTAAAGTGGTAAAATGGCTTGTGTGTTTTAAATGTGGCATGTGTTT
1 GTCCACACTATCCGAAAGCCTAAAGTGGTAAAATGGCTTGTGTGTTTTAAATGTGGCATGTGTTT
* * *
86565475 GTCCACACTATCCGAAGGCCTAAATTGGTAAAATGGCTTGTGTGTTTTGAATGTGGCATGT
1 GTCCACACTATCCGAAAGCCTAAAGTGGTAAAATGGCTTGTGTGTTTTAAATGTGGCATGT
86565536 ATGGCAAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.34
Consensus pattern (65 bp):
GTCCACACTATCCGAAAGCCTAAAGTGGTAAAATGGCTTGTGTGTTTTAAATGTGGCATGTGTTT
Found at i:86566547 original size:24 final size:23
Alignment explanation
Indices: 86566520--86566572 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
86566510 ATCAAATATA
* * *
86566520 ATTCCTTATTTCAATCAGTTTCAC
1 ATTCATTACTTCAAT-AATTTCAC
86566544 ATTCATTACTTCAATAATTTCAC
1 ATTCATTACTTCAATAATTTCAC
86566567 AGTTCA
1 A-TTCA
86566573 ATGCAGTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.30, C:0.23, G:0.04, T:0.43
Consensus pattern (23 bp):
ATTCATTACTTCAATAATTTCAC
Found at i:86567518 original size:3 final size:3
Alignment explanation
Indices: 86567510--86567556 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
86567500 TATTTAACAT
* * *
86567510 TAA TAA TAA TAA TAA TAA TAA CAA CAA TAA CAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
86567557 TCTTTTACTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:86570322 original size:51 final size:51
Alignment explanation
Indices: 86570263--86570644 Score: 669
Period size: 51 Copynumber: 7.5 Consensus size: 51
86570253 AGATGGTTTT
86570263 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
86570314 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
86570365 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
86570416 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
86570467 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
86570518 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
* * * * ** * *
86570569 GTACTAAGTGCAGGCTACTATGCGTATCAGAT-GGTT-AGGTCATGTGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCA-ATCACGTGTGTA
86570619 GTACTAAGTGCAGGCTACTATGTGTA
1 GTACTAAGTGCAGGCTACTATGTGTA
86570645 TCATATTATT
Statistics
Matches: 321, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
49 1 0.00
50 37 0.12
51 283 0.88
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (51 bp):
GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCAATCACGTGTGTA
Found at i:86570685 original size:49 final size:50
Alignment explanation
Indices: 86570263--86570699 Score: 249
Period size: 51 Copynumber: 8.6 Consensus size: 50
86570253 AGATGGTTTT
* * * * * * *
86570263 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCA-ATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGCGTATCAGATGA-TT-AGGTCACATGTGTA
* * * * * * *
86570314 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCA-ATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGCGTATCAGATGA-TT-AGGTCACATGTGTA
* * * * * * *
86570365 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCA-ATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGCGTATCAGATGA-TT-AGGTCACATGTGTA
* * * * * * *
86570416 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCA-ATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGCGTATCAGATGA-TT-AGGTCACATGTGTA
* * * * * * *
86570467 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCA-ATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGCGTATCAGATGA-TT-AGGTCACATGTGTA
* * * * * * *
86570518 GTACTAAGTGCAGGCTACTATGTGTACCCGGTAACTTCA-ATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTATGCGTATCAGATGA-TT-AGGTCACATGTGTA
* **
86570569 GTACTAAGTGCAGGCTACTATGCGTATCAGATGGTTAGGTCATGTGTGTA
1 GTACTAAGTGCAGGCTACTATGCGTATCAGATGATTAGGTCACATGTGTA
* * * *
86570619 GTACTAAGTGCAGGCTACTATGTGTATCATATTATT-GGTCGCATGTGTA
1 GTACTAAGTGCAGGCTACTATGCGTATCAGATGATTAGGTCACATGTGTA
* * *
86570668 GTACTAAGTGCAAGCTACTATGAGTACCAGAT
1 GTACTAAGTGCAGGCTACTATGCGTATCAGAT
86570700 AGCTTCAGTT
Statistics
Matches: 366, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
49 39 0.11
50 44 0.12
51 283 0.77
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (50 bp):
GTACTAAGTGCAGGCTACTATGCGTATCAGATGATTAGGTCACATGTGTA
Found at i:86579383 original size:18 final size:18
Alignment explanation
Indices: 86579360--86579405 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
86579350 AAACACACAG
*
86579360 AGTAAGCTTTGAAAGCTT
1 AGTAAGCTCTGAAAGCTT
86579378 AGTAAGCTCTGAAAGCTT
1 AGTAAGCTCTGAAAGCTT
*
86579396 AGCAAGCTCT
1 AGTAAGCTCT
86579406 TATCTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (18 bp):
AGTAAGCTCTGAAAGCTT
Found at i:86585249 original size:25 final size:25
Alignment explanation
Indices: 86585221--86585282 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
86585211 CAGCTCATAT
** *
86585221 GAGCTTATTATTATTCAGCTTGGAG
1 GAGCTTACCATTATTCAGCTCGGAG
* *
86585246 GAGCTTACCGTTATTCAGCTCGTAG
1 GAGCTTACCATTATTCAGCTCGGAG
86585271 GAGCTTACCATT
1 GAGCTTACCATT
86585283 TACAACTCGT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (25 bp):
GAGCTTACCATTATTCAGCTCGGAG
Found at i:86585298 original size:24 final size:25
Alignment explanation
Indices: 86585244--86585298 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
86585234 TTCAGCTTGG
* * *
86585244 AGGAGCTTACCGTTATTCAGCTCGT
1 AGGAGCTTACCATTATACAACTCGT
86585269 AGGAGCTTACCATT-TACAACTCGT
1 AGGAGCTTACCATTATACAACTCGT
*
86585293 ATGAGC
1 AGGAGC
86585299 ATACATGTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (25 bp):
AGGAGCTTACCATTATACAACTCGT
Found at i:86589123 original size:23 final size:22
Alignment explanation
Indices: 86589067--86589126 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
86589057 GAAGATCTGG
86589067 ATTAAAAGTAA-TAATATTTAAA
1 ATTAAAA-TAATTAATATTTAAA
* * *
86589089 ATTGAAACTAATTTATATTTCACA
1 ATT-AAAATAATTAATATTT-AAA
86589113 ATTAAAATAATTAA
1 ATTAAAATAATTAA
86589127 CCATGGCTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
22 6 0.20
23 19 0.63
24 5 0.17
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.38
Consensus pattern (22 bp):
ATTAAAATAATTAATATTTAAA
Found at i:86596372 original size:25 final size:23
Alignment explanation
Indices: 86596338--86596404 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 23
86596328 TCTAAAAAAT
* *
86596338 TTAATTAAATAAAAATTATTAATGA
1 TTAAATAAATAAAAATTA--AATAA
*
86596363 TTCAATAAATTGAAAAATTAAATAA
1 TTAAATAAA-T-AAAAATTAAATAA
*
86596388 TTAAATAAATTAAAATT
1 TTAAATAAATAAAAATT
86596405 TAGGAGAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 6 0.17
24 1 0.03
25 19 0.54
26 1 0.03
27 8 0.23
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.37
Consensus pattern (23 bp):
TTAAATAAATAAAAATTAAATAA
Found at i:86596821 original size:17 final size:18
Alignment explanation
Indices: 86596794--86596827 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
86596784 AATCAAATAT
86596794 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
86596812 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
86596828 TAAAAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:86598506 original size:142 final size:142
Alignment explanation
Indices: 86598250--86598533 Score: 568
Period size: 142 Copynumber: 2.0 Consensus size: 142
86598240 CAGCCTTGAC
86598250 CCACTTAGACACATAGTCTACTGCTACCAATAAATACTTGTGATCAAAGGACGGAGGGAAAGGAC
1 CCACTTAGACACATAGTCTACTGCTACCAATAAATACTTGTGATCAAAGGACGGAGGGAAAGGAC
86598315 CAAGAAAGTCAATACCTTATACATCGAACAATTCTACCTCAATAATGTTTGTTCGAGGCATCTCA
66 CAAGAAAGTCAATACCTTATACATCGAACAATTCTACCTCAATAATGTTTGTTCGAGGCATCTCA
86598380 TTTATGTTGGTG
131 TTTATGTTGGTG
86598392 CCACTTAGACACATAGTCTACTGCTACCAATAAATACTTGTGATCAAAGGACGGAGGGAAAGGAC
1 CCACTTAGACACATAGTCTACTGCTACCAATAAATACTTGTGATCAAAGGACGGAGGGAAAGGAC
86598457 CAAGAAAGTCAATACCTTATACATCGAACAATTCTACCTCAATAATGTTTGTTCGAGGCATCTCA
66 CAAGAAAGTCAATACCTTATACATCGAACAATTCTACCTCAATAATGTTTGTTCGAGGCATCTCA
86598522 TTTATGTTGGTG
131 TTTATGTTGGTG
86598534 ACATTTCTGA
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
142 142 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (142 bp):
CCACTTAGACACATAGTCTACTGCTACCAATAAATACTTGTGATCAAAGGACGGAGGGAAAGGAC
CAAGAAAGTCAATACCTTATACATCGAACAATTCTACCTCAATAATGTTTGTTCGAGGCATCTCA
TTTATGTTGGTG
Found at i:86609706 original size:14 final size:14
Alignment explanation
Indices: 86609687--86609718 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
86609677 AGGTATGGGC
86609687 GTTATGAATTTTTT
1 GTTATGAATTTTTT
86609701 GTTATGAATTTTTT
1 GTTATGAATTTTTT
86609715 GTTA
1 GTTA
86609719 ACTAATGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (14 bp):
GTTATGAATTTTTT
Found at i:86632033 original size:22 final size:22
Alignment explanation
Indices: 86632014--86632057 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
86632004 TGATTTTTTG
86632014 TAATATAATT-TATTTGTTTTAC
1 TAAT-TAATTCTATTTGTTTTAC
86632036 TAATTAATTCTATTTGTGTTTA
1 TAATTAATTCTATTTGT-TTTA
86632058 GGTTAACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.59
Consensus pattern (22 bp):
TAATTAATTCTATTTGTTTTAC
Found at i:86639028 original size:20 final size:20
Alignment explanation
Indices: 86638992--86639029 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
86638982 AGTTTTCTTA
*
86638992 AAGCAAGTTTTTGGCTTTTT
1 AAGCAAGTTTATGGCTTTTT
86639012 AAGCAAGCTTTAT-GCTTT
1 AAGCAAG-TTTATGGCTTT
86639030 CTTTGGCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.45
Consensus pattern (20 bp):
AAGCAAGTTTATGGCTTTTT
Found at i:86644601 original size:30 final size:30
Alignment explanation
Indices: 86644546--86644604 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
86644536 ACACGGGCGT
* **
86644546 GACACATGGTCATGTTTCTTAGCTGTGTGC
1 GACACATGGTCATGTTACACAGCTGTGTGC
*
86644576 GACACATGGTCATGTTACACGGCTGTGTG
1 GACACATGGTCATGTTACACAGCTGTGTG
86644605 TCCCTTGGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.32
Consensus pattern (30 bp):
GACACATGGTCATGTTACACAGCTGTGTGC
Found at i:86645060 original size:23 final size:22
Alignment explanation
Indices: 86645021--86645069 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
86645011 GTGATTCATA
* *
86645021 TGAATGGATTTTGATTATGATTG
1 TGAATGAATTTTGATTAAG-TTG
86645044 TGAATGAATGTTT-ATTAAGTTG
1 TGAATGAAT-TTTGATTAAGTTG
86645066 TGAA
1 TGAA
86645070 ATGTTAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 7 0.30
23 13 0.57
24 3 0.13
ACGTcount: A:0.31, C:0.00, G:0.24, T:0.45
Consensus pattern (22 bp):
TGAATGAATTTTGATTAAGTTG
Found at i:86659769 original size:31 final size:30
Alignment explanation
Indices: 86659728--86659804 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 30
86659718 AAATTCGGCT
*
86659728 CACGCCCGTGTGGTCTACCCGTGTGGGCCCA
1 CACGCCCGTGTGGTC-ACCCGTATGGGCCCA
* *
86659759 CATGCCCGTGTGCTGCACCCGTATGGGCCCA
1 CACGCCCGTGTGGT-CACCCGTATGGGCCCA
* *
86659790 CGCGCCTGTGTGGTC
1 CACGCCCGTGTGGTC
86659805 CACACGGCCC
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
30 1 0.03
31 36 0.95
32 1 0.03
ACGTcount: A:0.09, C:0.38, G:0.32, T:0.21
Consensus pattern (30 bp):
CACGCCCGTGTGGTCACCCGTATGGGCCCA
Found at i:86661283 original size:30 final size:30
Alignment explanation
Indices: 86661249--86661307 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
86661239 GTAATTAAAG
*
86661249 CTTAATGAGTATAGTTTCAAATGAAATCAT
1 CTTAATGAGTATAGGTTCAAATGAAATCAT
86661279 CTTAATGAGTATAGGTTCAAATGAAATCA
1 CTTAATGAGTATAGGTTCAAATGAAATCA
86661308 ATGAGAACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (30 bp):
CTTAATGAGTATAGGTTCAAATGAAATCAT
Found at i:86662204 original size:45 final size:45
Alignment explanation
Indices: 86662140--86662308 Score: 195
Period size: 45 Copynumber: 3.9 Consensus size: 45
86662130 TGTGCAGTAC
* *
86662140 TATTCAGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAA
* *
86662185 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAA
* * *
86662230 TATTCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA-ATGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAA
** * * *
86662272 -ATTCGGGTTTTTAAACCTAGCAGGCT-GAATGCCGGTG
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTG
86662309 GATTGATAAA
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
41 7 0.07
42 24 0.22
43 11 0.10
44 14 0.13
45 51 0.48
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAA
Found at i:86670013 original size:45 final size:43
Alignment explanation
Indices: 86669946--86670149 Score: 218
Period size: 45 Copynumber: 4.7 Consensus size: 43
86669936 ATTTGGTCCG
*
86669946 TTGAGCCTAGCAGGCTATAATGCCGGTGAGATATCACTCGGGCAT
1 TTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT-ATTCGGGC-T
*
86669991 TTAAGCCTAGCAGGCTATAATGCCGGTGAGATAATATTCGGGCCT
1 TTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-ATATTCGGG-CT
* *
86670036 TTGAGCCTAGCAGGCTATATTGCCGGTGAGATATTATTCGGGCC
1 TTGAGCCTAGCAGGCTATAATGCCGGTGAGATA-TATTCGGGCT
* * **
86670080 TCGAGCCTAGCAGGCGA-AATGCCGGTGA-ATGA-ATTCGGATTT
1 TTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-ATATTCGG-GCT
* * *
86670122 TTAAACCTAGCAGGCT-GAATGCCGGTGA
1 TTGAGCCTAGCAGGCTATAATGCCGGTGA
86670150 TTTGATAAAA
Statistics
Matches: 138, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
41 6 0.04
42 25 0.18
43 11 0.08
44 17 0.12
45 76 0.55
46 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (43 bp):
TTGAGCCTAGCAGGCTATAATGCCGGTGAGATATATTCGGGCT
Found at i:86673479 original size:40 final size:40
Alignment explanation
Indices: 86673393--86673486 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
86673383 TTACTACGTT
* * *
86673393 TGGCACTTAGTGTGCATTTCGAGATAGCTTCAGCTATGTA
1 TGGCACTTAGTGTGCAATTCGAGATAGCTTCACCTATATA
* * *
86673433 TAGCACTTAGTGTGCGAATTGGA-ATAGCTTCACCTATATG
1 TGGCACTTAGTGTGC-AATTCGAGATAGCTTCACCTATATA
*
86673473 TGGCACTAAGTGTG
1 TGGCACTTAGTGTG
86673487 TGGTACTGAG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
40 40 0.89
41 5 0.11
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCAATTCGAGATAGCTTCACCTATATA
Found at i:86683421 original size:23 final size:24
Alignment explanation
Indices: 86683395--86683444 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
86683385 TATCTAGAGC
86683395 TCCTAATATGGTCCTTT-GGAACT
1 TCCTAATATGGTCCTTTAGGAACT
* *
86683418 TCCTAATATGGTTCTTTATGAACT
1 TCCTAATATGGTCCTTTAGGAACT
86683442 TCC
1 TCC
86683445 CGATTATGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (24 bp):
TCCTAATATGGTCCTTTAGGAACT
Found at i:86685954 original size:21 final size:21
Alignment explanation
Indices: 86685926--86685977 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
86685916 TTTTTCCTAA
86685926 GATG-TAAATTGGATTGAATT
1 GATGTTAAATTGGATTGAATT
*
86685946 G-TGTTTAAATTGTATTGAATT
1 GATG-TTAAATTGGATTGAATT
86685967 GATGTTAAATT
1 GATGTTAAATT
86685978 TACTCGTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 2 0.07
20 1 0.04
21 23 0.82
22 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (21 bp):
GATGTTAAATTGGATTGAATT
Found at i:86688667 original size:25 final size:25
Alignment explanation
Indices: 86688620--86688667 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
86688610 TTATAAGATG
* * * *
86688620 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
86688645 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
86688668 GTTTAAATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:86688734 original size:20 final size:20
Alignment explanation
Indices: 86688711--86688768 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
86688701 TAAACATGGT
86688711 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
86688731 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
86688751 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
86688769 GTGTATTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:86688751 original size:11 final size:11
Alignment explanation
Indices: 86688715--86688768 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
86688705 CATGGTATGT
86688715 ATGATATGCAC
1 ATGATATGCAC
* *
86688726 ATGACATG--T
1 ATGATATGCAC
86688735 ATGATATGCAC
1 ATGATATGCAC
*
86688746 ATGATATG--T
1 ATGATATGCAC
86688755 ATGATATGCAC
1 ATGATATGCAC
86688766 ATG
1 ATG
86688769 GTGTATTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:86688849 original size:23 final size:23
Alignment explanation
Indices: 86688819--86688959 Score: 223
Period size: 23 Copynumber: 6.1 Consensus size: 23
86688809 AGGAAGTGCA
*
86688819 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
86688842 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
86688865 GAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
86688888 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
86688910 AAACGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
86688933 AAAAGGGCTT-TCGCCCCAGTTATT
1 -AAAGGGCTTAT-GCCCCAGTTATT
86688957 AAA
1 AAA
86688960 AGAGGCTAGG
Statistics
Matches: 110, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
22 21 0.19
23 69 0.63
24 20 0.18
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:86688976 original size:25 final size:24
Alignment explanation
Indices: 86688818--86688980 Score: 176
Period size: 23 Copynumber: 7.0 Consensus size: 24
86688808 GAGGAAGTGC
* *
86688818 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTACGCCCCAGTTATT
*
86688842 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTACGCCCCAGTTATT
* *
86688865 -GAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTACGCCCCAGTTATT
*
86688888 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTACGCCCCAGTTATT
* *
86688910 -AAACGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTACGCCCCAGTTATT
*
86688933 AAAAGGGCTTTCGCCCCAGTTATT
1 AAAAGGGCTTACGCCCCAGTTATT
*
86688957 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
86688981 ATGATAAAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
22 21 0.17
23 65 0.52
24 29 0.23
25 11 0.09
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTACGCCCCAGTTATT
Found at i:86692804 original size:52 final size:52
Alignment explanation
Indices: 86692740--86692862 Score: 176
Period size: 52 Copynumber: 2.4 Consensus size: 52
86692730 TATCTAGGAT
* *
86692740 ATGGCATTGTGCTAAGTGAAACAAGACCGTGGCATCGAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAACAAGACCATGGCATCGAAGTGAAATAAGTCC
* * *
86692792 ATGGCAATGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAACAAGACCATGGCATCGAAGTGAAATAAGTCC
*
86692844 ATGAC-ATGGTGCTAAGTGA
1 ATGGCAAT-GTGCTAAGTGA
86692863 GAAATTTCCC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
51 2 0.03
52 62 0.97
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (52 bp):
ATGGCAATGTGCTAAGTGAAACAAGACCATGGCATCGAAGTGAAATAAGTCC
Found at i:86692817 original size:28 final size:27
Alignment explanation
Indices: 86692740--86692862 Score: 132
Period size: 24 Copynumber: 4.7 Consensus size: 27
86692730 TATCTAGGAT
* *
86692740 ATGGCATTGTGCTAAGTGAAACAAGACC
1 ATGGCA-TGTGCTAAGTGAAATAAGTCC
* *
86692768 GTGGCA--T-CGAAGTGAAATAAGTCC
1 ATGGCATGTGCTAAGTGAAATAAGTCC
86692792 ATGGCAATGTGCTAAGTGAAATAAGTCC
1 ATGGC-ATGTGCTAAGTGAAATAAGTCC
86692820 ATGGCA--T-CTAAGTGAAATAAGTCC
1 ATGGCATGTGCTAAGTGAAATAAGTCC
*
86692844 ATGACATGGTGCTAAGTGA
1 ATGGCAT-GTGCTAAGTGA
86692863 GAAATTTCCC
Statistics
Matches: 80, Mismatches: 7, Indels: 16
0.78 0.07 0.16
Matches are distributed among these distances:
24 40 0.50
25 3 0.04
27 3 0.04
28 34 0.43
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (27 bp):
ATGGCATGTGCTAAGTGAAATAAGTCC
Found at i:86692941 original size:51 final size:51
Alignment explanation
Indices: 86692886--86692982 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
86692876 TGAGCCTTAG
* *
86692886 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTCG-CTACAAGGGTGGTACTATGTGAAGGCCACTTTGT
*
86692937 GAATAAAATAGCTTTCGCTACAAGGGTGGTATTATGTGAAGGCCAC
1 GAATAAAATAGCTTTCGCTACAAGGGTGGTACTATGTGAAGGCCAC
86692983 CGTGTATCCG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
50 1 0.02
51 41 0.98
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTCGCTACAAGGGTGGTACTATGTGAAGGCCACTTTGT
Found at i:86694885 original size:28 final size:29
Alignment explanation
Indices: 86694853--86694918 Score: 98
Period size: 30 Copynumber: 2.3 Consensus size: 29
86694843 TGTGTCTTAG
86694853 TCGTGTGTG-ACACAGCCAGGTGAAACGA
1 TCGTGTGTGAACACAGCCAGGTGAAACGA
*
86694881 TCGTGTGTGACACACAGCCAGGTGAAACGG
1 TCGTGTGTGA-ACACAGCCAGGTGAAACGA
*
86694911 CCGTGTGT
1 TCGTGTGT
86694919 TCCCTGGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 9 0.26
30 25 0.74
ACGTcount: A:0.24, C:0.23, G:0.33, T:0.20
Consensus pattern (29 bp):
TCGTGTGTGAACACAGCCAGGTGAAACGA
Found at i:86697630 original size:40 final size:39
Alignment explanation
Indices: 86697586--86697810 Score: 281
Period size: 40 Copynumber: 5.7 Consensus size: 39
86697576 GCCACTAGCT
*
86697586 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
86697626 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * *
86697665 CAAATGCCTTCGGGACTTAGCCCGGACATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
86697705 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
86697745 CAAATGCCTTCGGAACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
86697785 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
86697811 TATCATCCGA
Statistics
Matches: 165, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 40 0.24
40 125 0.76
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:86699818 original size:18 final size:18
Alignment explanation
Indices: 86699795--86699832 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
86699785 TTGTTGTTTT
86699795 AGCCGATAGAGCTT-GCAA
1 AGCCGA-AGAGCTTAGCAA
*
86699813 AGCCGAGGAGCTTAGCAA
1 AGCCGAAGAGCTTAGCAA
86699831 AG
1 AG
86699833 AAAAGAGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.34, C:0.21, G:0.32, T:0.13
Consensus pattern (18 bp):
AGCCGAAGAGCTTAGCAA
Found at i:86706296 original size:48 final size:48
Alignment explanation
Indices: 86706225--86706550 Score: 298
Period size: 48 Copynumber: 6.8 Consensus size: 48
86706215 ACATTTGGGT
* *
86706225 GATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * *
86706273 GATATGAGAGCCAGTGCAAGACCATGTTTGGAACATGGCATCGGCGAT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * *
86706321 GTTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGG-CATT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C
* * * * * * * *
86706369 GATATGTGCGCTAATGTAAGACTATGTCTAGGACATGACATCGACCAC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * *
86706417 -ATTATGAGAACCAGTGTAAGACCATGTCTGGGACATAGCATC-TCCATA
1 GA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C
* * * * *
86706465 GAGATGAGAGCTAGTGTAAGACCATGTCTGGGACACGGCATCGACCTC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
* * * * * *
86706513 AACATGTGAGCCAATGTAAGACCATGTTTGGAACATGG
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGG
86706551 AATTGGCAAT
Statistics
Matches: 219, Mismatches: 53, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
47 5 0.02
48 209 0.95
49 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
Found at i:86706405 original size:96 final size:96
Alignment explanation
Indices: 86706234--86706550 Score: 332
Period size: 96 Copynumber: 3.3 Consensus size: 96
86706224 TGATATGTGT
* * *
86706234 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCCAGTGCAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATAGATATGAGAGCTAGTGTAAGACCAT
* * * ** *
86706298 GT-TTGGAACATGGCATCGGCGATGTTGTGAGA
65 GTCTAGG-ACATGGCATCGACCACATTATGAGA
* * * * * *
86706330 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCATTGATATGTGCGCTAATGTAAGACTATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGAGAGCTAGTGTAAGACCATG
*
86706395 TCTAGGACATGACATCGACCACATTATGAGA
66 TCTAGGACATGGCATCGACCACATTATGAGA
* * ** *
86706426 ACCAGTGTAAGACCATGTCTGGGACATAGCATCTCCATAGAGATGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGAGAGCTAGTGTAAGACCATG
* * * ** *
86706491 TCTGGGACACGGCATCGACCTCAACATGTGA
66 TCTAGGACATGGCATCGACCACATTATGAGA
* * *
86706522 GCCAATGTAAGACCATGTTTGGAACATGG
1 GCCAGTGTAAGACCATGTCTGGGACATGG
86706551 AATTGGCAAT
Statistics
Matches: 181, Mismatches: 38, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
95 2 0.01
96 176 0.97
97 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGAGAGCTAGTGTAAGACCATG
TCTAGGACATGGCATCGACCACATTATGAGA
Found at i:86706484 original size:144 final size:144
Alignment explanation
Indices: 86706224--86706539 Score: 368
Period size: 144 Copynumber: 2.2 Consensus size: 144
86706214 GACATTTGGG
* * * * * *
86706224 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
1 TGATATGTGCGCCAATGTAAGACCATGTCTAGGACATGACATCGACCACGATATGAGAACCAGTG
* * * *
86706289 CAAGACCATGTTTGGAACATGGCATCGGCGATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGA
66 CAAGACCATGTCTGGAACATAGCATCGGCCATGTAGTGAGAGCCAGTGTAAGACCATGTCTGGGA
86706354 CATGGCGTCGGCAT
131 CATGGCGTCGGCAT
* *
86706368 TGATATGTGCGCTAATGTAAGACTATGTCTAGGACATGACATCGACCAC-ATTATGAGAACCAGT
1 TGATATGTGCGCCAATGTAAGACCATGTCTAGGACATGACATCGACCACGA-TATGAGAACCAGT
* * * *
86706432 GTAAGACCATGTCTGGGACATAGCATC-TCCATAG-AGATGAGAGCTAGTGTAAGACCATGTCTG
65 GCAAGACCATGTCTGGAACATAGCATCGGCCAT-GTAG-TGAGAGCCAGTGTAAGACCATGTCTG
* * * *
86706495 GGACACGGCATCGACCT
128 GGACATGGCGTCGGCAT
** * *
86706512 CAACATGTGAGCCAATGTAAGACCATGT
1 TGATATGTGCGCCAATGTAAGACCATGT
86706540 TTGGAACATG
Statistics
Matches: 143, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
143 5 0.03
144 138 0.97
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (144 bp):
TGATATGTGCGCCAATGTAAGACCATGTCTAGGACATGACATCGACCACGATATGAGAACCAGTG
CAAGACCATGTCTGGAACATAGCATCGGCCATGTAGTGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCGTCGGCAT
Found at i:86711621 original size:13 final size:13
Alignment explanation
Indices: 86711603--86711629 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86711593 TCAATAATCG
86711603 CACACGGGCGTGT
1 CACACGGGCGTGT
86711616 CACACGGGCGTGT
1 CACACGGGCGTGT
86711629 C
1 C
86711630 CCTACCAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:86713778 original size:20 final size:18
Alignment explanation
Indices: 86713753--86713789 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
86713743 ACCTAACACG
86713753 AATTAAATTTAAATCATATT
1 AATTAAA-TTAAA-CATATT
86713773 AATTAAATTAAACATAT
1 AATTAAATTAAACATAT
86713790 CAACATCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 5 0.29
20 7 0.41
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
AATTAAATTAAACATATT
Found at i:86714543 original size:17 final size:17
Alignment explanation
Indices: 86714521--86714554 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
86714511 CCATCTTCGA
86714521 CTAAAAAATTAATTTTC
1 CTAAAAAATTAATTTTC
86714538 CTAAAAAATTAATTTTC
1 CTAAAAAATTAATTTTC
86714555 TTTAATACGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (17 bp):
CTAAAAAATTAATTTTC
Found at i:86721328 original size:21 final size:21
Alignment explanation
Indices: 86721302--86721343 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
86721292 GTGGACTTGG
*
86721302 TTATTTTGTGATATGTGTCAT
1 TTATTTTGTGATATATGTCAT
86721323 TTATTTTGTGATATATGTCAT
1 TTATTTTGTGATATATGTCAT
86721344 GCAAATTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.05, G:0.17, T:0.57
Consensus pattern (21 bp):
TTATTTTGTGATATATGTCAT
Found at i:86729883 original size:53 final size:53
Alignment explanation
Indices: 86729701--86729906 Score: 205
Period size: 53 Copynumber: 3.8 Consensus size: 53
86729691 ATTAGGGTTT
* * * * * *
86729701 AAGGATACCAAGTGAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
86729755 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
86729810 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* **
86729863 AAGGATACCACGTAAGACCATATCAAGACATGGCAATGGTAAGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGT
86729907 ATAAAAAGGA
Statistics
Matches: 121, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 44 0.36
54 37 0.31
55 40 0.33
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:86743023 original size:40 final size:40
Alignment explanation
Indices: 86742979--86743882 Score: 1627
Period size: 40 Copynumber: 22.6 Consensus size: 40
86742969 GCTACTTGCT
* ** * *
86742979 CAAATGCCTCCGGGACTTAGCCCG-GTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAAT-TAGTCACTAGCA
* * ** * *
86743019 CAAATTCCTTCGGGACTTAACCCG-GTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAAT-TAGTCACTAGCA
86743059 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743099 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743139 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743179 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743219 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743259 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743299 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743339 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743379 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743419 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743459 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743499 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743539 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743579 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743619 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743659 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743699 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743739 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
* *
86743779 CAAATGCCTTCGGGACTTAGCCCG-GATATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGAAAT-TAGTCACT-AGCA
86743819 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
86743859 CAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
86743883 GTTATCATCC
Statistics
Matches: 846, Mismatches: 13, Indels: 10
0.97 0.01 0.01
Matches are distributed among these distances:
39 3 0.00
40 839 0.99
41 4 0.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGAAATTAGTCACTAGCA
Found at i:86748585 original size:31 final size:30
Alignment explanation
Indices: 86748550--86748610 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
86748540 TTTTAATACG
*
86748550 AACTTTGGCAAAAATTACATTTTTACCCCTA
1 AACTTTGGC-AAAATTACACTTTTACCCCTA
* * *
86748581 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
86748611 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:86761410 original size:20 final size:20
Alignment explanation
Indices: 86761385--86761431 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
86761375 GAGGTTGAGG
86761385 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
86761405 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
86761425 ACACGGG
1 ACACGGG
86761432 AGTTTGTGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.38, G:0.32, T:0.09
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:86769147 original size:40 final size:40
Alignment explanation
Indices: 86769092--86769315 Score: 355
Period size: 40 Copynumber: 5.6 Consensus size: 40
86769082 CGGATGATAA
* * *
86769092 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGCT-ACTAATT
86769132 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
86769172 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
86769212 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
* * *
86769252 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
86769291 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
86769316 AGCTAGTGGC
Statistics
Matches: 176, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 28 0.16
40 145 0.82
41 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
Found at i:86777341 original size:40 final size:40
Alignment explanation
Indices: 86777279--86777525 Score: 192
Period size: 40 Copynumber: 6.2 Consensus size: 40
86777269 CGGATGATAA
*
86777279 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGT-GCTAATAT
* *
86777319 TCGGGCTAAGTCCCGAAGGCATTTGTA-CGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AGCGAG-TGCTAATAT
* * * *
86777359 TCGGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGCTA--ATAT
* *
86777399 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGCTAATAT
** * * * *
86777437 ACCGGGCTAAGTCTTGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TGCTAATAT
*
86777478 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-GCTAATAT
86777518 CC-GGCTAA
1 CCGGGCTAA
86777526 ACTCCGAAGG
Statistics
Matches: 170, Mismatches: 22, Indels: 31
0.76 0.10 0.14
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
39 37 0.22
40 122 0.72
41 6 0.04
42 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGCTAATAT
Found at i:86777482 original size:79 final size:80
Alignment explanation
Indices: 86777320--86777502 Score: 251
Period size: 79 Copynumber: 2.3 Consensus size: 80
86777310 TGGCTAATTT
* *
86777320 CGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATTCGGGCTAAGTCCCGAAGGCGTTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
* * **
86777385 GCGAGCTATTATGTC
66 GCAAGCTACTATAAC
* * * **
86777400 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCTTGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
86777464 GCAAGTTACTATAAC
66 GCAAGCTACTATAAC
86777479 CGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
86777503 AGCTAGTGGC
Statistics
Matches: 91, Mismatches: 12, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
79 56 0.62
80 35 0.38
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAAC
Found at i:86777524 original size:79 final size:78
Alignment explanation
Indices: 86777320--86777525 Score: 227
Period size: 79 Copynumber: 2.6 Consensus size: 78
86777310 TGGCTAATTT
* *
86777320 CGGGCTAAGTCCCGAAGGCATTTGTA-CGAGCTACTATATTCGGGCTAAGTCCCGAAGGCGTTTG
1 CGGGCTAAGTCCCGAAGGCATTTG-AGCGAG-TACTATA-TCCGGCTAAGTCCCGAAGGCATTTG
* * **
86777384 TGCGAGCTATTATGTC
63 TGCAAGCTACTATAAC
* * **
86777400 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCTTGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATATCC-GGCTAAGTCCCGAAGGCATTTGT
*
86777464 GCAAGTTACTATAAC
64 GCAAGCTACTATAAC
* *
86777479 CGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
1 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-ACTATATCCGGCTAA
86777526 ACTCCGAAGG
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.02
79 68 0.64
80 36 0.34
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTACTATATCCGGCTAAGTCCCGAAGGCATTTGTGC
AAGCTACTATAAC
Found at i:86785593 original size:50 final size:48
Alignment explanation
Indices: 86785531--86785805 Score: 242
Period size: 50 Copynumber: 5.8 Consensus size: 48
86785521 ATATATCGAG
* *
86785531 GCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATCTGTCAGT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-TATCA-T
* * *
86785581 GCTGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACA-TATCAA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATTATCAT
* * * * * *
86785626 GCCGATGACATGTCCCAGACATGGTCTTACAGTAGCTTTCATATCTCAA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-TATCAT
* * * *
86785675 GCCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC-GTCTCAAT
1 G-CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATTATC-AT
* ** * * *
86785724 G-TCGATGCCATGCCCCAGACATGGTCTTGTATTGGCTCTCATAAT-AT
1 GCT-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATTATCAT
86785771 GGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 -GCTGATGCCATGTCCCAGACATGGTCTTACACTAGC
86785806 ACACATGTCA
Statistics
Matches: 182, Mismatches: 33, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
45 30 0.16
46 14 0.08
47 17 0.09
48 43 0.24
49 11 0.06
50 67 0.37
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATTATCAT
Found at i:86785702 original size:95 final size:95
Alignment explanation
Indices: 86785534--86785708 Score: 253
Period size: 95 Copynumber: 1.8 Consensus size: 95
86785524 TATCGAGGCT
* * * * * * *
86785534 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATCTGTCAGTGCTGATGCCATGTCCCAG
1 GATGACATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAGTCCCGATGCCATGTCCCAA
86785599 ACATGGTCTTACACTGACACATATCAAGCC
66 ACATGGTCTTACACTGACACATATCAAGCC
* *
86785629 GATGACATGTCCCAGACATGGTCTTACAGTAGCTTTCATATCTCAAG-CCCGATGCCATGTCCCA
1 GATGACATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC-AGTCCCGATGCCATGTCCCA
86785693 AACATGGTCTTACACT
65 AACATGGTCTTACACT
86785709 AGCTCTCGTC
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
95 68 0.97
96 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (95 bp):
GATGACATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAGTCCCGATGCCATGTCCCAA
ACATGGTCTTACACTGACACATATCAAGCC
Found at i:86786372 original size:31 final size:30
Alignment explanation
Indices: 86786320--86786380 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
86786310 CATAATTTAT
*
86786320 ACTTTTACAAAATAACCATTTTGCCCCTAG
1 ACTTTTACAAAATAACCATTTTACCCCTAG
* **
86786350 ACTTTTACAAAAATTATGATTTTACCCCTAG
1 ACTTTTAC-AAAATAACCATTTTACCCCTAG
86786381 GCTCTTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (30 bp):
ACTTTTACAAAATAACCATTTTACCCCTAG
Found at i:86790484 original size:50 final size:49
Alignment explanation
Indices: 86790362--86790550 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
86790352 TGCGGTTGCA
* * * * *
86790362 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* * **
86790413 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * * *
86790463 TGTGAAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
86790512 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
86790551 GCTTTGGCTA
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
49 40 0.35
50 43 0.37
51 32 0.28
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:86790549 original size:99 final size:101
Alignment explanation
Indices: 86790362--86790549 Score: 245
Period size: 99 Copynumber: 1.9 Consensus size: 101
86790352 TGCGGTTGCA
* * *
86790362 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGAAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGTGTAGTACTAAG
* * *
86790427 TGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
66 TGCAGGCTACTACGCGTACCAGATGGTTAGGTCACG
* * * * * *
86790463 TGTGAAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCGCATGTGTAGTACTATG
1 TGTGAAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGTGTAGTACTAAG
*
86790526 TGCAGGCTACTATGCGTACCAGAT
66 TGCAGGCTACTACGCGTACCAGAT
86790550 AGCTTTGGCT
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
99 38 0.51
100 1 0.01
101 35 0.47
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (101 bp):
TGTGAAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGTGTAGTACTAAG
TGCAGGCTACTACGCGTACCAGATGGTTAGGTCACG
Found at i:86793176 original size:63 final size:62
Alignment explanation
Indices: 86793104--86793228 Score: 223
Period size: 63 Copynumber: 2.0 Consensus size: 62
86793094 AAAAAGAAGG
*
86793104 GAAAGAGCTTGGAGAAAATCGGGTATGGTGGTTCACTAGACTAAGGTATGTTGATGTTGTTC
1 GAAAGAGCTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAGGTATGTTGATGTTGTTC
*
86793166 NGAAAGAGCTTGGAGAAAATCGGCTATGGTGGTTCATTAGACTAAGGTATGTTGATGTTGTTC
1 -GAAAGAGCTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAGGTATGTTGATGTTGTTC
86793229 CATGAGATTC
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.27, C:0.10, G:0.31, T:0.31
Consensus pattern (62 bp):
GAAAGAGCTTGGAGAAAATCGGCTATGGTGGTTCACTAGACTAAGGTATGTTGATGTTGTTC
Found at i:86794435 original size:40 final size:40
Alignment explanation
Indices: 86794375--86794558 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
86794365 TATTCGAATG
* *
86794375 ATATCCAGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
86794415 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
86794455 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
86794495 ATA-CACGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATC-CGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
86794535 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
86794559 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 2 0.02
40 117 0.95
41 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:86794508 original size:80 final size:80
Alignment explanation
Indices: 86794375--86794558 Score: 239
Period size: 80 Copynumber: 2.3 Consensus size: 80
86794365 TATTCGAATG
* * * *
86794375 ATATCCAGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
86794439 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
86794455 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATA-CACGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATC-CGGACTAAGTCCCGAAGGC
*
86794519 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
86794535 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
86794559 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
79 4 0.04
80 88 0.96
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:86800538 original size:19 final size:20
Alignment explanation
Indices: 86800501--86800538 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
86800491 ATAAGGTGGT
86800501 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
86800521 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
86800539 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:86804031 original size:39 final size:39
Alignment explanation
Indices: 86803988--86804065 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
86803978 CTCATGTTGT
86803988 TCAACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAAG
1 TCAACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAAG
* *
86804027 TCAACTTGGCCGAATAGAATAAAGAAAAAGAATGGAAAG
1 TCAACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAAG
86804066 AGCTTGGAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.51, C:0.10, G:0.26, T:0.13
Consensus pattern (39 bp):
TCAACTTGGCCGAATAGAAGAAAGAAAAAGAAGGGAAAG
Found at i:86804283 original size:15 final size:17
Alignment explanation
Indices: 86804263--86804294 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
86804253 AATTTTTAAA
86804263 ATTTTAA-AT-TATTTT
1 ATTTTAATATATATTTT
86804278 ATTTTAATATATATTTT
1 ATTTTAATATATATTTT
86804295 CATTGCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 2 0.13
17 6 0.40
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTTTAATATATATTTT
Found at i:86806148 original size:23 final size:23
Alignment explanation
Indices: 86806120--86806213 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
86806110 ATGTGTGTAT
* *
86806120 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
86806143 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
86806166 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
86806189 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
86806212 CT
1 CT
86806214 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:86809966 original size:40 final size:40
Alignment explanation
Indices: 86809915--86810187 Score: 336
Period size: 40 Copynumber: 6.8 Consensus size: 40
86809905 ATTTGAATTT
* * * * *
86809915 TATCCGGGCTAAGTCCCAAAGGTAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGA-TA
*
86809955 TATCCGGGCTAAGACCCGTAGGC-ATTCGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATA
* *
86809995 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
* *
86810035 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG--ATA
*
86810077 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
* *
86810117 TATCCGGGCTAAGACCCGAATGC-ATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATA
** *
86810157 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
86810188 TTGTGGTAAT
Statistics
Matches: 208, Mismatches: 18, Indels: 14
0.87 0.08 0.06
Matches are distributed among these distances:
39 6 0.03
40 157 0.75
41 8 0.04
42 37 0.18
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
Found at i:86810130 original size:122 final size:120
Alignment explanation
Indices: 86809915--86810187 Score: 368
Period size: 122 Copynumber: 2.3 Consensus size: 120
86809905 ATTTGAATTT
* * * * * *
86809915 TATCCGGGCTAAGTCCCAAAGGTAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGTAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
* * *
86809980 TCGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
66 TCGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATA
* *
86810035 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG-TGAT-TATATCCGGGCTAAGACCCGAAGGC
* *
86810100 AATT-GTGCAAGTTGATATATCCGGGCTAAGACCCGAATGCATTCGTGCGAGTTGCTA
64 -ATTCGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATA
** *
86810157 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
86810188 TTGTGGTAAT
Statistics
Matches: 132, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
120 28 0.21
121 4 0.03
122 97 0.73
123 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (120 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATA
Found at i:86814503 original size:23 final size:23
Alignment explanation
Indices: 86814475--86814568 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
86814465 ATGTGTGTAT
* *
86814475 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
86814498 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
86814521 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
86814544 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
86814567 CT
1 CT
86814569 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:86818518 original size:14 final size:14
Alignment explanation
Indices: 86818487--86818528 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
86818477 TACTCTACTA
*
86818487 TTATT-TTATAATT
1 TTATTGTTATTATT
*
86818500 ATATTGTTATTATT
1 TTATTGTTATTATT
86818514 TTATTGTTATTATT
1 TTATTGTTATTATT
86818528 T
1 T
86818529 GGATATATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
13 4 0.16
14 21 0.84
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (14 bp):
TTATTGTTATTATT
Found at i:86832879 original size:48 final size:46
Alignment explanation
Indices: 86832779--86832881 Score: 134
Period size: 46 Copynumber: 2.2 Consensus size: 46
86832769 GACAGGACAG
* * * *
86832779 GACAGAAATGAGCCATGTAAGTCCATATCAGTTATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAATTATATGGCATTGGA
* *
86832825 GACAGGAATGAGCCATGTAAGCCCTTATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCA-AT-TATATGGCATTGGA
86832873 GACAGGAAT
1 GACAGGAAT
86832882 AATTCATGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
46 26 0.53
47 1 0.02
48 22 0.45
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAATTATATGGCATTGGA
Found at i:86843393 original size:60 final size:60
Alignment explanation
Indices: 86843300--86843419 Score: 206
Period size: 60 Copynumber: 2.0 Consensus size: 60
86843290 GATGTGGAAT
*
86843300 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGCATCC-GAGCTTAAAGACC
1 TGTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTGCATCCGGA-CTTAAAGACC
*
86843360 TGTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGACC
1 TGTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTGCATCCGGACTTAAAGACC
86843420 CGCAGGCTTC
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
60 55 0.96
61 2 0.04
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (60 bp):
TGTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTGCATCCGGACTTAAAGACC
Found at i:86843404 original size:40 final size:40
Alignment explanation
Indices: 86843360--86843439 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
86843350 CTTAAAGACC
*
86843360 TGTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAAT
1 TGTATCCGGACTTAAAGACCCACAGGCTTCGTGCTGGAAT
*
86843400 TGTATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGACTTAAAGACCCACAGGCTTCGTGCTGGAAT
86843440 AACATCCGAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (40 bp):
TGTATCCGGACTTAAAGACCCACAGGCTTCGTGCTGGAAT
Found at i:86843447 original size:40 final size:40
Alignment explanation
Indices: 86843363--86843466 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
86843353 AAAGACCTGT
* * ***
86843363 ATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTGT
1 ATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATAAC
86843403 ATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATAAC
1 ATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATAAC
* * *
86843443 ATCC-GAGTTAAAAACCTGCAGGCT
1 ATCCGGACTTAAAGACCCGCAGGCT
86843467 GTGCTAGATA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 17 0.30
40 39 0.70
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (40 bp):
ATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATAAC
Found at i:86844561 original size:23 final size:21
Alignment explanation
Indices: 86844507--86844571 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 21
86844497 AAAAGCTATC
*
86844507 TACAAATCAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
86844528 TACAGAATCATATCTTCTAAGATT
1 TACA-AATCATATC-TCTAAGA-T
*
86844552 TACATATCATAT-T-TAAGAT
1 TACAAATCATATCTCTAAGAT
86844571 T
1 T
86844572 GCATATCTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 2 0.05
20 5 0.13
21 5 0.13
22 8 0.21
23 14 0.36
24 5 0.13
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:86848838 original size:16 final size:17
Alignment explanation
Indices: 86848817--86848850 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
86848807 GTATAATTTT
*
86848817 ATTTTTATTAATT-TAA
1 ATTTTTATAAATTCTAA
86848833 ATTTTTATAAATTCTAA
1 ATTTTTATAAATTCTAA
86848850 A
1 A
86848851 GGGAGTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTTATAAATTCTAA
Found at i:86856086 original size:40 final size:40
Alignment explanation
Indices: 86856031--86856116 Score: 154
Period size: 40 Copynumber: 2.1 Consensus size: 40
86856021 TTATTTGATG
*
86856031 TGGAATTGTATCCGGGCTTAAAGATCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGATCCACAGGCTTCGTGC
*
86856071 TGGAATTGTATCCGGGCTTAAAGATCCATAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGATCCACAGGCTTCGTGC
86856111 TGGAAT
1 TGGAAT
86856117 AACATTCGGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGATCCACAGGCTTCGTGC
Found at i:86856857 original size:35 final size:35
Alignment explanation
Indices: 86856811--86856879 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
86856801 CCGGTGGCGG
*
86856811 TTATGTTTTGTATTGTAAATATTTTAGCCATATGA
1 TTATGTTTTGTATTATAAATATTTTAGCCATATGA
86856846 TTATGTTTTGTATTATAAATATTTTAGCCATATG
1 TTATGTTTTGTATTATAAATATTTTAGCCATATG
86856880 GAAATGGCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (35 bp):
TTATGTTTTGTATTATAAATATTTTAGCCATATGA
Found at i:86861008 original size:43 final size:44
Alignment explanation
Indices: 86860959--86861109 Score: 202
Period size: 43 Copynumber: 3.5 Consensus size: 44
86860949 GATTACCAAG
* * *
86860959 ATGTGATTACATGTAAGACCATGTCTAGGGCATTGGTATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
*
86861003 -TGTGATTACATGTAAGGCCATGTCT-GAGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTAG-GACATTGGCATCGTAT
* *
86861045 ATATGATTTCATGTAAGACCATGTCTAGGACATTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
*
86861088 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
86861110 ATTTGAGATA
Statistics
Matches: 93, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
42 2 0.02
43 90 0.97
44 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
Found at i:86864944 original size:23 final size:20
Alignment explanation
Indices: 86864907--86864964 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
86864897 ATATATAATA
* *
86864907 ATATATATT-TTTATTTATT
1 ATATATATTATATATTTATC
86864926 ATTTATATATTATACTATTTATC
1 A--TATATATTATA-TATTTATC
86864949 ATATATATTATATATT
1 ATATATATTATATATT
86864965 ACTAGGTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
19 1 0.03
20 4 0.12
21 19 0.58
22 1 0.03
23 8 0.24
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
ATATATATTATATATTTATC
Found at i:86869935 original size:85 final size:85
Alignment explanation
Indices: 86869792--86869959 Score: 309
Period size: 85 Copynumber: 2.0 Consensus size: 85
86869782 CTTCGACTTC
*
86869792 GACACCTCCGAGTCTGATAGCTGACGAACAAAATCTATAAAACAGAGAATTAAAGCAAAAGAATA
1 GACACCTCCGAGTCCGATAGCTGACGAACAAAATCTATAAAACAGAGAATTAAAGCAAAAGAATA
86869857 AGCATTTCGATGCTTAGTTT
66 AGCATTTCGATGCTTAGTTT
* *
86869877 GACACTTCCGAGTCCGATAGCTGACGAACAAAATCTATAAAACCGAGAATTAAAGCAAAAGAATA
1 GACACCTCCGAGTCCGATAGCTGACGAACAAAATCTATAAAACAGAGAATTAAAGCAAAAGAATA
86869942 AGCATTTCGATGCTTAGT
66 AGCATTTCGATGCTTAGT
86869960 AAGTTTTAAA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 80 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (85 bp):
GACACCTCCGAGTCCGATAGCTGACGAACAAAATCTATAAAACAGAGAATTAAAGCAAAAGAATA
AGCATTTCGATGCTTAGTTT
Found at i:86870534 original size:41 final size:41
Alignment explanation
Indices: 86870482--86870775 Score: 509
Period size: 41 Copynumber: 7.2 Consensus size: 41
86870472 CGCTGACTCA
* *
86870482 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
86870523 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
86870563 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
86870604 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
86870645 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
86870686 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
86870727 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
86870768 AAAAGCCC
1 AAAAGCCC
86870776 AGCTAAGTTC
Statistics
Matches: 238, Mismatches: 14, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
40 32 0.13
41 206 0.87
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:86871182 original size:80 final size:80
Alignment explanation
Indices: 86871049--86871209 Score: 313
Period size: 80 Copynumber: 2.0 Consensus size: 80
86871039 ATACGCAAAT
86871049 GTTACTTTCACCAAATGCTCTTGTAATTAAAGTAATAACTTATCAATCGACTATCAAAACCAAAT
1 GTTACTTTCACCAAATGCTCTTGTAATTAAAGTAATAACTTATCAATCGACTATCAAAACCAAAT
86871114 GTCATTATATTACTA
66 GTCATTATATTACTA
*
86871129 GTTACTTTCTCCAAATGCTCTTGTAATTAAAGTAATAACTTATCAATCGACTATCAAAACCAAAT
1 GTTACTTTCACCAAATGCTCTTGTAATTAAAGTAATAACTTATCAATCGACTATCAAAACCAAAT
86871194 GTCATTATATTACTA
66 GTCATTATATTACTA
86871209 G
1 G
86871210 ATATACATGC
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (80 bp):
GTTACTTTCACCAAATGCTCTTGTAATTAAAGTAATAACTTATCAATCGACTATCAAAACCAAAT
GTCATTATATTACTA
Found at i:86878667 original size:108 final size:108
Alignment explanation
Indices: 86878484--86878699 Score: 432
Period size: 108 Copynumber: 2.0 Consensus size: 108
86878474 TCCTTCAATG
86878484 ACCGAAAGTCTCATTTCTCCCCAACTCTTCTTCTCTTTCGGTTTTTGGAAAGAAACAAGGTGAGT
1 ACCGAAAGTCTCATTTCTCCCCAACTCTTCTTCTCTTTCGGTTTTTGGAAAGAAACAAGGTGAGT
86878549 ACTTTTTTTTTTGTTTTCACCCACCTACTATTTTATTACATTC
66 ACTTTTTTTTTTGTTTTCACCCACCTACTATTTTATTACATTC
86878592 ACCGAAAGTCTCATTTCTCCCCAACTCTTCTTCTCTTTCGGTTTTTGGAAAGAAACAAGGTGAGT
1 ACCGAAAGTCTCATTTCTCCCCAACTCTTCTTCTCTTTCGGTTTTTGGAAAGAAACAAGGTGAGT
86878657 ACTTTTTTTTTTGTTTTCACCCACCTACTATTTTATTACATTC
66 ACTTTTTTTTTTGTTTTCACCCACCTACTATTTTATTACATTC
86878700 TCCATGATAA
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 108 1.00
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (108 bp):
ACCGAAAGTCTCATTTCTCCCCAACTCTTCTTCTCTTTCGGTTTTTGGAAAGAAACAAGGTGAGT
ACTTTTTTTTTTGTTTTCACCCACCTACTATTTTATTACATTC
Found at i:86882116 original size:22 final size:22
Alignment explanation
Indices: 86882088--86882134 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
86882078 ATAACGAGCT
*
86882088 CATTACGTATGAGTTTTATGTA
1 CATTACGTATGAGTTTTACGTA
86882110 CATTACGTATGAGTTTTACGTA
1 CATTACGTATGAGTTTTACGTA
86882132 CAT
1 CAT
86882135 ACCTGCATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.43
Consensus pattern (22 bp):
CATTACGTATGAGTTTTACGTA
Found at i:86892079 original size:43 final size:43
Alignment explanation
Indices: 86891990--86892096 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
86891980 TGTGATTACA
* * *
86891990 TGTAAGACCATGTCTGGAACATTGGCATTGTATTGAGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTAATGAGATTATG
* *
86892033 TGTAAAACCATGTCTGGGACATTGGCATCGTTAAT-CGATT-TCG
1 TGTAAGACCATGTCTGGGACATTGGCATCG-TAATGAGATTAT-G
* *
86892076 TGTAAGACCCTGTCTAGGACA
1 TGTAAGACCATGTCTGGGACA
86892097 GTGGTCTAGG
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.02
43 50 0.93
44 3 0.06
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTAATGAGATTATG
Found at i:86909582 original size:46 final size:45
Alignment explanation
Indices: 86909529--86909704 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
86909519 TATTTGGGCA
86909529 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
86909575 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * * *
86909622 TCCGAGCTCGTTGAATTGAGTCTGAGTTCACTTATGGATGCCAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
86909668 CCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86909705 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 65 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:86909684 original size:93 final size:93
Alignment explanation
Indices: 86909525--86909696 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
86909515 AGGATATTTG
* * * * *
86909525 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCCAACGCCCAAACTCGTTGAG
86909590 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
86909618 GGCATCCGAGCTCGTTGAATTGAGTCTGAGTTCACTTATGGATGCCAACGCCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCCAACGCCCAAACTCGTTGAG
86909683 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
86909697 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCCAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:86911693 original size:38 final size:38
Alignment explanation
Indices: 86911642--86911718 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
86911632 CCCTTAGGTA
86911642 TTTAGGGGTTTTAGTTCATAACTAAATAAGAAAACATC
1 TTTAGGGGTTTTAGTTCATAACTAAATAAGAAAACATC
86911680 TTTAGGGGTTTTAGTTCATAACTAAATAAGAAAACATC
1 TTTAGGGGTTTTAGTTCATAACTAAATAAGAAAACATC
86911718 T
1 T
86911719 CAGAAGAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
TTTAGGGGTTTTAGTTCATAACTAAATAAGAAAACATC
Found at i:86912721 original size:20 final size:21
Alignment explanation
Indices: 86912681--86912721 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
86912671 CACAATTCAT
* *
86912681 TCACTTCTCTTCTCTCCTTTC
1 TCACTTCTCTCCTCTCATTTC
86912702 TCACTT-TCTCCTCTCATTTC
1 TCACTTCTCTCCTCTCATTTC
86912722 CCCATTTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.07, C:0.41, G:0.00, T:0.51
Consensus pattern (21 bp):
TCACTTCTCTCCTCTCATTTC
Found at i:86927951 original size:40 final size:40
Alignment explanation
Indices: 86927899--86927992 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
86927889 CTCGGTATCT
86927899 CACACTTAGTGCC-TCATATAGCCGAAGCTA-TTCCAACTCG
1 CACACTTAGTGCCAT-ATATAGCCGAAGCTATTTCCAACT-G
* * * * *
86927939 CACACTTAGTGCCATTTGTAGCTGAAGCTATTTCGAAGTG
1 CACACTTAGTGCCATATATAGCCGAAGCTATTTCCAACTG
86927979 CACACTTAGTGCCA
1 CACACTTAGTGCCA
86927993 AACATAGTCG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 40 0.85
41 7 0.15
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.28
Consensus pattern (40 bp):
CACACTTAGTGCCATATATAGCCGAAGCTATTTCCAACTG
Found at i:86937331 original size:44 final size:44
Alignment explanation
Indices: 86937267--86937354 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
86937257 GTGGAAGTGG
* * * * * *
86937267 GAAAGAGTGACTATGGACTTTGTTAGTAGGTTGCCCTTAACGCC
1 GAAAGAGTAACTATGAACTTTGTGAGTACGCTACCCTTAACGCC
86937311 GAAAGAGTAACTATGAACTTTGTGAGTACGCTACCCTTAACGCC
1 GAAAGAGTAACTATGAACTTTGTGAGTACGCTACCCTTAACGCC
86937355 TACTAAGAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (44 bp):
GAAAGAGTAACTATGAACTTTGTGAGTACGCTACCCTTAACGCC
Found at i:86940506 original size:27 final size:27
Alignment explanation
Indices: 86940468--86940530 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
86940458 TGCATACTGT
*
86940468 ACTGACACTGTAATAGGCTTAGGCCCC
1 ACTGATACTGTAATAGGCTTAGGCCCC
* **
86940495 ACTGATACTGTAATGGGCTTAGTTCCC
1 ACTGATACTGTAATAGGCTTAGGCCCC
86940522 ACTGATACT
1 ACTGATACT
86940531 ATTACTGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (27 bp):
ACTGATACTGTAATAGGCTTAGGCCCC
Found at i:86940543 original size:33 final size:33
Alignment explanation
Indices: 86940500--86940628 Score: 111
Period size: 34 Copynumber: 3.8 Consensus size: 33
86940490 GCCCCACTGA
* * *
86940500 TACTGTAATGGGCTTAGTTCCC-ACTGATACTAT
1 TACTGAAATGGGCTCAG-GCCCAACTGATACTAT
* *
86940533 TACTGAAATGGGCTCAGGCCCAGACTGCTACTGT
1 TACTGAAATGGGCTCAGGCCCA-ACTGATACTAT
* * *
86940567 TACTGAAATGGGCTCAGGCCTAAACTGCTACTGT
1 TACTGAAATGGGCTCAGGCC-CAACTGATACTAT
86940601 TACT-AACATGGGCT-ACGGCCCTAACTGA
1 TACTGAA-ATGGGCTCA-GGCCC-AACTGA
86940629 AACTGATAGG
Statistics
Matches: 82, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
32 3 0.04
33 18 0.22
34 60 0.73
35 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (33 bp):
TACTGAAATGGGCTCAGGCCCAACTGATACTAT
Found at i:86940573 original size:34 final size:34
Alignment explanation
Indices: 86940522--86940627 Score: 135
Period size: 34 Copynumber: 3.1 Consensus size: 34
86940512 CTTAGTTCCC
* * *
86940522 ACTGATACTATTACTGAAATGGGCTCAGGCCCAG
1 ACTGCTACTGTTACTGAAATGGGCTCAGGCCCAA
*
86940556 ACTGCTACTGTTACTGAAATGGGCTCAGGCCTAA
1 ACTGCTACTGTTACTGAAATGGGCTCAGGCCCAA
*
86940590 ACTGCTACTGTTACT-AACATGGGCT-ACGGCCCTA
1 ACTGCTACTGTTACTGAA-ATGGGCTCA-GGCCCAA
86940624 ACTG
1 ACTG
86940628 AAACTGATAG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
33 3 0.05
34 61 0.95
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (34 bp):
ACTGCTACTGTTACTGAAATGGGCTCAGGCCCAA
Found at i:86946181 original size:50 final size:50
Alignment explanation
Indices: 86946021--86946245 Score: 222
Period size: 50 Copynumber: 4.5 Consensus size: 50
86946011 ATGACCCATT
* * * *
86946021 GTGCAGGCTACTACGTGTACCATACT-GTTAAGTCGCATGTGTAGTACTAA
1 GTGCAGGCTACTACGTGTATCAGA-TGGTTAGGTCACATGTGTAGTACTAA
* * * * * *
86946071 GTGCAGGCTACTATGCGTACTCA-ATGACTTCGATCACGTGTGTAGTACTAA
1 GTGCAGGCTACTACGTGTA-TCAGATG-GTTAGGTCACATGTGTAGTACTAA
** * *
86946122 GTGTTGGCTACTACGTGTATCAGATGGTGAGGTCACGTGTGTAGTACTAA
1 GTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACTAA
* * * *
86946172 GTGCAGGCTACTACGTGTACCGGATTGTT-GGTCGCATGTGTAGTACTAA
1 GTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACTAA
* *
86946221 GTGCAGGCTACTATGCGTATCAGAT
1 GTGCAGGCTACTACGTGTATCAGAT
86946246 AGCTTCGGAT
Statistics
Matches: 142, Mismatches: 29, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
49 40 0.28
50 64 0.45
51 38 0.27
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (50 bp):
GTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACTAA
Found at i:86950351 original size:55 final size:55
Alignment explanation
Indices: 86950267--86950372 Score: 194
Period size: 55 Copynumber: 1.9 Consensus size: 55
86950257 AGAGTGTCAA
86950267 CAAAGTTTTGAGAAGTTGAAAGAGAGGTTGACCAAAGCACCAGCGTTAGTGATTC
1 CAAAGTTTTGAGAAGTTGAAAGAGAGGTTGACCAAAGCACCAGCGTTAGTGATTC
* *
86950322 CAAAGTTTTGAGAAGTTGAAAGAGCGGTTGACCAAAGCACCAGTGTTAGTG
1 CAAAGTTTTGAGAAGTTGAAAGAGAGGTTGACCAAAGCACCAGCGTTAGTG
86950373 CAACCCGAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (55 bp):
CAAAGTTTTGAGAAGTTGAAAGAGAGGTTGACCAAAGCACCAGCGTTAGTGATTC
Found at i:86953593 original size:50 final size:50
Alignment explanation
Indices: 86953518--86953794 Score: 312
Period size: 51 Copynumber: 5.5 Consensus size: 50
86953508 TGAATACACG
86953518 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
* * ** * *
86953568 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATAACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-AT-ACTGTTAAGTCGCA
86953619 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
* * ** * *
86953669 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATAACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-AT-ACTGTTAAGTCGCA
** * *
86953720 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
*
86953769 TGGGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
86953795 TGCGTATCAG
Statistics
Matches: 189, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
48 5 0.03
49 33 0.17
50 67 0.35
51 70 0.37
52 8 0.04
53 6 0.03
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
Found at i:86953689 original size:101 final size:101
Alignment explanation
Indices: 86953514--86953813 Score: 523
Period size: 101 Copynumber: 3.0 Consensus size: 101
86953504 ATTGTGAATA
86953514 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
86953579 AAGTGCAGGCTACTATGCGTACTCAATAACTTCGAT
66 AAGTGCAGGCTACTATGCGTACTCAATAACTTCGAT
86953615 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
86953680 AAGTGCAGGCTACTATGCGTACTCAATAACTTCGAT
66 AAGTGCAGGCTACTATGCGTACTCAATAACTTCGAT
** * * *
86953716 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGTCGCATGGGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
*
86953780 AAGTGCAGGCTACTATGCGTA-TCAGATAGCTTCG
66 AAGTGCAGGCTACTATGCGTACTCA-ATAACTTCG
86953814 GATATAAGTG
Statistics
Matches: 192, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
99 3 0.02
100 45 0.23
101 144 0.75
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACTCAATAACTTCGAT
Found at i:86965798 original size:46 final size:46
Alignment explanation
Indices: 86965653--86965966 Score: 246
Period size: 46 Copynumber: 6.6 Consensus size: 46
86965643 TTTGTGTGCT
* * *
86965653 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * *
86965699 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
* *
86965747 AGTGTAAGACATGTCTGGGACATACATCGGCCTCGAGATGTA-AACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* *
86965793 AGTGTAAGACATGTTTGGGACATGCATCGG-CTACGAGA-G-GAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* * * *
86965837 AGTGTAAGACCAAGTCT-GGAGCATGGCATCGGCAC-AGATAAGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGA-CAT-GCATCGGC-CTCGA-GA-TGAGAGCC
* ** * * *
86965887 GGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCAATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-GAGAGCC
86965936 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
86965967 ACATTATACC
Statistics
Matches: 217, Mismatches: 33, Indels: 33
0.77 0.12 0.12
Matches are distributed among these distances:
44 14 0.06
45 11 0.05
46 66 0.30
47 30 0.14
48 25 0.12
49 36 0.17
50 32 0.15
51 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:86967545 original size:28 final size:28
Alignment explanation
Indices: 86967513--86967568 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
86967503 AAATCTGAGT
**
86967513 AAAAAAAATTTTAATATTATTTTCTGTG
1 AAAAAAAAAATTAATATTATTTTCTGTG
86967541 AAAAAAAAAATTAATATTATTTTCTGTG
1 AAAAAAAAAATTAATATTATTTTCTGTG
86967569 CTTATTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (28 bp):
AAAAAAAAAATTAATATTATTTTCTGTG
Found at i:86969076 original size:40 final size:38
Alignment explanation
Indices: 86969032--86969221 Score: 240
Period size: 39 Copynumber: 4.8 Consensus size: 38
86969022 ATAGCTACTT
*
86969032 GCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGTTAT--TAACTA
* *
86969072 GCACAAATGCCTTCGGG-CTTAGGCCGGAATTATTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGG--TTATTAACTA
*
86969111 GCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGTTAT--TAACTA
* *
86969151 GCACAAATGCCTTCGGG-CTTAGGCCGGAATTATTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGG--TTATTAACTA
86969190 GCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 GCACAAATGCCTTCGGGACTTAGCCCGGTTAT
86969222 CATCCGAATA
Statistics
Matches: 132, Mismatches: 10, Indels: 18
0.82 0.06 0.11
Matches are distributed among these distances:
38 8 0.06
39 60 0.45
40 56 0.42
41 8 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (38 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGTTATTAACTA
Found at i:86969133 original size:79 final size:79
Alignment explanation
Indices: 86969032--86969221 Score: 380
Period size: 79 Copynumber: 2.4 Consensus size: 79
86969022 ATAGCTACTT
86969032 GCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGGCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGGCC
86969097 GGAATTATTCACTA
66 GGAATTATTCACTA
86969111 GCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGGCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGGCC
86969176 GGAATTATTCACTA
66 GGAATTATTCACTA
86969190 GCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 GCACAAATGCCTTCGGGACTTAGCCCGGTTAT
86969222 CATCCGAATA
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 111 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGGCC
GGAATTATTCACTA
Found at i:86972037 original size:44 final size:42
Alignment explanation
Indices: 86971987--86972143 Score: 149
Period size: 44 Copynumber: 3.7 Consensus size: 42
86971977 TATGTGTTAT
86971987 CGTGTAAGACCACGTCTGGGACATTGGCATCGGCTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGG-TT-TGATTTA
* * * * *
86972031 CGTGTAAGACCATGTCTGGGACATCGACATCGTATTTAATTT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-GTTTGATTTA
* *
86972073 TGTGTAAGACC-CTGTCTGGGACAATGGCATCGGTATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGG--TTTGATTTA
* * *
86972116 CATGTAAGACCACATCTGGGACGTTGGC
1 CGTGTAAGACCACGTCTGGGACATTGGC
86972144 GTTGTATGAG
Statistics
Matches: 90, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 28 0.31
43 30 0.33
44 32 0.36
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGGTTTGATTTA
Found at i:86972134 original size:43 final size:43
Alignment explanation
Indices: 86971987--86972137 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 43
86971977 TATGTGTTAT
* *
86971987 CGTGTAAGACCACGTCTGGGACATTGGCATCGGCT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACAATGGCATCGG-TATTTGA-TTA
* * * *
86972031 CGTGTAAGACCATGTCTGGGAC-ATCGACATC-GTATTTAATTT
1 CGTGTAAGACCACGTCTGGGACAAT-GGCATCGGTATTTGATTA
*
86972073 TGTGTAAGACC-CTGTCTGGGACAATGGCATCGGTATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACAATGGCATCGGTATTTGATTA
* *
86972116 CATGTAAGACCACATCTGGGAC
1 CGTGTAAGACCACGTCTGGGAC
86972138 GTTGGCGTTG
Statistics
Matches: 87, Mismatches: 14, Indels: 13
0.76 0.12 0.11
Matches are distributed among these distances:
42 27 0.31
43 33 0.38
44 27 0.31
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACAATGGCATCGGTATTTGATTA
Found at i:86975056 original size:30 final size:30
Alignment explanation
Indices: 86975022--86975083 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
86975012 TTTTGGTAAA
* *
86975022 TGTGGTGACTGTGTGAAATAATGGGAATTG
1 TGTGGTAAATGTGTGAAATAATGGGAATTG
86975052 TGTGGTAAATGTGTGAAATAATGGGAATTG
1 TGTGGTAAATGTGTGAAATAATGGGAATTG
86975082 TG
1 TG
86975084 GGCTGCTTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.29, C:0.02, G:0.35, T:0.34
Consensus pattern (30 bp):
TGTGGTAAATGTGTGAAATAATGGGAATTG
Found at i:86978744 original size:48 final size:48
Alignment explanation
Indices: 86978618--86978861 Score: 223
Period size: 48 Copynumber: 5.1 Consensus size: 48
86978608 CAGTAAGAAT
*
86978618 ATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACTC-TGTCTGGGAC
1 ATGGCATCAGCCACAACATGAGAGCCAGTGTAAGAC-CATGTCTGGGAC
*** * * *
86978666 ATGGCATC-G--ACGTTGATGTTTGTGCTAGTGTAAGACCATGTCTGGGAC
1 ATGGCATCAGCCAC-AACATG--AGAGCCAGTGTAAGACCATGTCTGGGAC
*
86978714 ATGGCATCAGCCACAACATGAGAGCCAGTGTAAGACCATGTTTGGGAC
1 ATGGCATCAGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGAC
* * * *
86978762 AGGGCATCAG-CATTAAAATG-TA-CTCTAGTGTAAGACCATGTCTGGGAC
1 ATGGCATCAGCCA-CAACATGAGAGC-C-AGTGTAAGACCATGTCTGGGAC
* * ***
86978810 ATTGCATCGGCCACCTTATGAGAGCCAGTGTAAGACCATGTCTGGGAC
1 ATGGCATCAGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGAC
86978858 ATGG
1 ATGG
86978862 GATCGATAAT
Statistics
Matches: 156, Mismatches: 27, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
45 2 0.01
46 4 0.03
47 6 0.04
48 133 0.85
49 5 0.03
50 4 0.03
51 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (48 bp):
ATGGCATCAGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGAC
Found at i:86978746 original size:96 final size:96
Alignment explanation
Indices: 86978618--86978867 Score: 328
Period size: 96 Copynumber: 2.6 Consensus size: 96
86978608 CAGTAAGAAT
*
86978618 ATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACTC-TGTCTGGGACATGGCATCGA-CGTT-
1 ATGGCATCGGCCACAACATGAGAGCCAGTGTAAGAC-CATGTCTGGGACATGGCATCGAGCATTA
* **
86978680 GATGTTTGTGCTAGTGTAAGACCATGTCTGGGAC
65 AATG-TACT-CTAGTGTAAGACCATGTCTGGGAC
* * *
86978714 ATGGCATCAGCCACAACATGAGAGCCAGTGTAAGACCATGTTTGGGACAGGGCATC-AGCATTAA
1 ATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAGCATT-A
86978778 AATGTACTCTAGTGTAAGACCATGTCTGGGAC
65 AATGTACTCTAGTGTAAGACCATGTCTGGGAC
* *** *
86978810 ATTGCATCGGCCACCTTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGGATCGA
1 ATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA
86978868 TAATTCATCC
Statistics
Matches: 134, Mismatches: 15, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
95 2 0.01
96 126 0.94
97 3 0.02
98 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (96 bp):
ATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAGCATTAA
ATGTACTCTAGTGTAAGACCATGTCTGGGAC
Found at i:86990628 original size:24 final size:24
Alignment explanation
Indices: 86990583--86990627 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
86990573 TTGTGAAACT
86990583 TGAAAGGCTGAAAAGCTAAAAAGC
1 TGAAAGGCTGAAAAGCTAAAAAGC
*
86990607 TGAAAGGTTGAAAAG-TAAAAA
1 TGAAAGGCTGAAAAGCTAAAAA
86990628 AAGTGGGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.53, C:0.07, G:0.24, T:0.16
Consensus pattern (24 bp):
TGAAAGGCTGAAAAGCTAAAAAGC
Found at i:86998442 original size:48 final size:48
Alignment explanation
Indices: 86998371--86998606 Score: 275
Period size: 48 Copynumber: 4.9 Consensus size: 48
86998361 GACATTTGGG
* * * *
86998371 TGATATGA-ATGCCAGTGTAAGACCATGTCTGGGACATGGTATCAGCAT
1 TGATATGAGA-GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
*
86998419 TGATATGTACA-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGACACC
1 TGATATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CA-C
* *
86998469 T--TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCAC
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
* *
86998515 TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-C
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
* * * *
86998562 TCGACATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCG
1 T-GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
86998607 ACAATTCACC
Statistics
Matches: 164, Mismatches: 16, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
46 2 0.01
47 6 0.04
48 151 0.92
49 3 0.02
50 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
Done.