Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 258 of 284
Found at i:86998878 original size:73 final size:73
Alignment explanation
Indices: 86998759--86998976 Score: 418
Period size: 73 Copynumber: 3.0 Consensus size: 73
86998749 GAGATATGAG
*
86998759 TCTAGTTATGTTGCCTTGATGGTAAGAATGACATGAGTAAGTTCTAGTTATGAAAATTATCTTGG
1 TCTAGTTATGTTGCCTTAATGGTAAGAATGACATGAGTAAGTTCTAGTTATGAAAATTATCTTGG
86998824 TACAATAC
66 TACAATAC
86998832 TCTAGTTATGTTGCCTTAATGGTAAGAATGACATGAGTAAGTTCTAGTTATGAAAATTATCTTGG
1 TCTAGTTATGTTGCCTTAATGGTAAGAATGACATGAGTAAGTTCTAGTTATGAAAATTATCTTGG
86998897 TACAATAC
66 TACAATAC
*
86998905 TCTAGTTATGTTGCCTTAATGGTAAGAATGACATGAGTAAGTTCTAGTTATGAAAATGATCTTGG
1 TCTAGTTATGTTGCCTTAATGGTAAGAATGACATGAGTAAGTTCTAGTTATGAAAATTATCTTGG
86998970 TACAATA
66 TACAATA
86998977 TTGAAATCTT
Statistics
Matches: 143, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 143 1.00
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.37
Consensus pattern (73 bp):
TCTAGTTATGTTGCCTTAATGGTAAGAATGACATGAGTAAGTTCTAGTTATGAAAATTATCTTGG
TACAATAC
Found at i:87005567 original size:42 final size:44
Alignment explanation
Indices: 87005502--87005592 Score: 134
Period size: 42 Copynumber: 2.1 Consensus size: 44
87005492 CATTGACTTA
*
87005502 TGATTTACGTGTAAGACCATGTCTGGGACA-TCGTCATCG-TATT
1 TGATTTACGTGTAAGACCATGTCTGGGACAGT-GGCATCGATATT
*
87005545 TGATTT-CGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCGATATT
87005588 TGATT
1 TGATT
87005593 ACATGCACTA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
42 28 0.64
43 16 0.36
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (44 bp):
TGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCGATATT
Found at i:87005588 original size:43 final size:43
Alignment explanation
Indices: 87005465--87005592 Score: 145
Period size: 44 Copynumber: 3.0 Consensus size: 43
87005455 TATGTGTTAT
* * * *
87005465 CGTGTAAGACGACGTCTAGGACATCGGCATTG-ACTTATGATTTA
1 CGTGTAAGACCATGTCTGGGACATCGGCATCGTA-TT-TGATTTA
*
87005509 CGTGTAAGACCATGTCTGGGACATCGTCATCGTATTTGATTT-
1 CGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTTA
*
87005551 CGTGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGATT
1 CGTGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGATT
87005593 ACATGCACTA
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
42 28 0.38
43 16 0.22
44 29 0.39
45 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTTA
Found at i:87005693 original size:40 final size:39
Alignment explanation
Indices: 87005635--87005799 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 39
87005625 CGTTTGGATA
* * *
87005635 AAAAACGCCACTAAAGATCGAGCATTAGCGGCCCTTCTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTT-TTG
* * * **
87005675 AAAAACGCCGCTATAGATCTAGAATTACCGGTACTTTCTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTT-TG
* *
87005715 AAAAACGCCGCTATAGATCGAGCATTAGCGGTGCTTTTC
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTG
* *
87005754 AAACAACGCTGCTATAGGTCGA-CTATTAGCGGCGCTTTTTG
1 AAA-AACGCCGCTATAGATCGAGC-ATTAGCGGCGC-TTTTG
87005795 AAAAA
1 AAAAA
87005800 TTCCGCAAAA
Statistics
Matches: 105, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
39 6 0.06
40 92 0.88
41 7 0.07
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (39 bp):
AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTG
Found at i:87005797 original size:80 final size:80
Alignment explanation
Indices: 87005635--87005799 Score: 188
Period size: 80 Copynumber: 2.1 Consensus size: 80
87005625 CGTTTGGATA
* * *
87005635 AAAAACGCCACTAAAGATCGAGCATTAGCGGCCCTTCTTGAAAAACGCCGCTATAGATCTAGAAT
1 AAAAACGCCACTAAAGATCGAGCATTAGCGGCCCTTCTTCAAAAACGCCGCTATAGATCGACAAT
*
87005700 TACCGGTACTTTCTG
66 TACCGGCACTTTCTG
* * ** * * *
87005715 AAAAACGCCGCTATAGATCGAGCATTAGCGGTGCTT-TTCAAACAACGCTGCTATAGGTCGACTA
1 AAAAACGCCACTAAAGATCGAGCATTAGCGGCCCTTCTTCAAA-AACGCCGCTATAGATCGACAA
* * *
87005779 TTAGCGGCGCTTTTTG
65 TTACCGGCACTTTCTG
87005795 AAAAA
1 AAAAA
87005800 TTCCGCAAAA
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
79 5 0.07
80 65 0.93
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (80 bp):
AAAAACGCCACTAAAGATCGAGCATTAGCGGCCCTTCTTCAAAAACGCCGCTATAGATCGACAAT
TACCGGCACTTTCTG
Found at i:87005929 original size:39 final size:40
Alignment explanation
Indices: 87005886--87005965 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 40
87005876 ATTAAGCATT
* *
87005886 AGCGGCGCTTTT-AAAAAATGCCACGATAGGTCGGCCATA
1 AGCGGCGCTTTTCAAAAAAAGCCACGATAGGTCGACCATA
* *
87005925 AGCGGCGCTTTTCAAAAAAAGCCGCTATAGGTCGACCATA
1 AGCGGCGCTTTTCAAAAAAAGCCACGATAGGTCGACCATA
87005965 A
1 A
87005966 AAAAGCGCCG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 12 0.33
40 24 0.67
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.20
Consensus pattern (40 bp):
AGCGGCGCTTTTCAAAAAAAGCCACGATAGGTCGACCATA
Found at i:87006328 original size:22 final size:23
Alignment explanation
Indices: 87006287--87006350 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 23
87006277 ATGGTTTAGG
* * *
87006287 GTTTAATGTTTAGGGGTTATTAT
1 GTTTAAGGTTTATGGATTATTAT
87006310 -TTTAAGGTTTATGGATTA-TAT
1 GTTTAAGGTTTATGGATTATTAT
* * *
87006331 GTTTAGGGATTATGGTTTAT
1 GTTTAAGGTTTATGGATTAT
87006351 GGTTTTAGGG
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 3 0.09
22 30 0.91
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.52
Consensus pattern (23 bp):
GTTTAAGGTTTATGGATTATTAT
Found at i:87006391 original size:7 final size:7
Alignment explanation
Indices: 87006379--87006404 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
87006369 TAAGGTTTAG
87006379 GGGTTAT
1 GGGTTAT
87006386 GGGTTAT
1 GGGTTAT
87006393 GGGTTAT
1 GGGTTAT
87006400 GGGTT
1 GGGTT
87006405 CAGCATTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.46, T:0.42
Consensus pattern (7 bp):
GGGTTAT
Found at i:87006965 original size:298 final size:298
Alignment explanation
Indices: 87006531--87007126 Score: 1192
Period size: 298 Copynumber: 2.0 Consensus size: 298
87006521 TAAAAGAGAT
87006531 AATATTAATTTTAATATATTAAAATTATGATTATAGTTTAAATTATTTAAGATATAATAGATAAT
1 AATATTAATTTTAATATATTAAAATTATGATTATAGTTTAAATTATTTAAGATATAATAGATAAT
87006596 ATATATATATTAAACGGTTTAGGATTTAAGGTTTACTTGAGATTTGTTAAATGATGAAATTTTAT
66 ATATATATATTAAACGGTTTAGGATTTAAGGTTTACTTGAGATTTGTTAAATGATGAAATTTTAT
87006661 ACAATCAATTAATTCTTTTATATTTAAAAATATTTAATCTAAACCATTTGATATATTTAAATATT
131 ACAATCAATTAATTCTTTTATATTTAAAAATATTTAATCTAAACCATTTGATATATTTAAATATT
87006726 AGATTTAGAAAAAAAAACATTGATAAATAAATAAAATAAAGTAACAGATTGATATGAATAGGTAA
196 AGATTTAGAAAAAAAAACATTGATAAATAAATAAAATAAAGTAACAGATTGATATGAATAGGTAA
87006791 CTATCTATTTTGGATAGGGCCAAATTATAACAAATAAA
261 CTATCTATTTTGGATAGGGCCAAATTATAACAAATAAA
87006829 AATATTAATTTTAATATATTAAAATTATGATTATAGTTTAAATTATTTAAGATATAATAGATAAT
1 AATATTAATTTTAATATATTAAAATTATGATTATAGTTTAAATTATTTAAGATATAATAGATAAT
87006894 ATATATATATTAAACGGTTTAGGATTTAAGGTTTACTTGAGATTTGTTAAATGATGAAATTTTAT
66 ATATATATATTAAACGGTTTAGGATTTAAGGTTTACTTGAGATTTGTTAAATGATGAAATTTTAT
87006959 ACAATCAATTAATTCTTTTATATTTAAAAATATTTAATCTAAACCATTTGATATATTTAAATATT
131 ACAATCAATTAATTCTTTTATATTTAAAAATATTTAATCTAAACCATTTGATATATTTAAATATT
87007024 AGATTTAGAAAAAAAAACATTGATAAATAAATAAAATAAAGTAACAGATTGATATGAATAGGTAA
196 AGATTTAGAAAAAAAAACATTGATAAATAAATAAAATAAAGTAACAGATTGATATGAATAGGTAA
87007089 CTATCTATTTTGGATAGGGCCAAATTATAACAAATAAA
261 CTATCTATTTTGGATAGGGCCAAATTATAACAAATAAA
87007127 GATGAAATAC
Statistics
Matches: 298, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
298 298 1.00
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.39
Consensus pattern (298 bp):
AATATTAATTTTAATATATTAAAATTATGATTATAGTTTAAATTATTTAAGATATAATAGATAAT
ATATATATATTAAACGGTTTAGGATTTAAGGTTTACTTGAGATTTGTTAAATGATGAAATTTTAT
ACAATCAATTAATTCTTTTATATTTAAAAATATTTAATCTAAACCATTTGATATATTTAAATATT
AGATTTAGAAAAAAAAACATTGATAAATAAATAAAATAAAGTAACAGATTGATATGAATAGGTAA
CTATCTATTTTGGATAGGGCCAAATTATAACAAATAAA
Found at i:87008425 original size:330 final size:333
Alignment explanation
Indices: 87007776--87008439 Score: 1136
Period size: 330 Copynumber: 2.0 Consensus size: 333
87007766 TATACCCAAG
* *
87007776 TACAAGATTTTGATTTTAAAAAAGCATCAGTCTTTGTTCTTTTGTGTATAAATCACGAGATTTGT
1 TACAAGATTTTGATTTTAAAAAAGCATCAGTCTTTGTTCTTTTATATATAAATCACGAGATTTGT
* *
87007841 TTGGTTTCTAAGAAAATATTTTATTCGTGTTTGGAAGATTTTCTTCGCCGTTTTAGAGGGTGTCT
66 TTGGTTTCTAAGAAAATATTTTATTCGTGTTTGGAAGATTTTCTTCACCATTTTAGAGGGTGTCT
* * * *
87007906 CTGTTTTTCTTTCTTTCGTTTTCTCTACAATCAAGTGGTTTTGATATTTTGATTTAAAGAGTTAC
131 CTATTTTTCTTTCTTTCATTTTATCT--AATCAAG-GGTTTTGAAATTTTGATTTAAAGAGTTAC
*
87007971 CCAATTGGATACGCAATTGTTGACGCTCTATAAAGTCTTAATCCCACCTCTTCATTTCATTTTCC
193 CCAATTGGATACGCAATCGTTGACGCTCTATAAAGTCTTAATCCCACCTCTTCATTTCATTTTCC
*
87008036 TGAGAAAATGTTGGACTTGACAGAAAATCCCAAGTTGGTAAGTATAATCTCTCTAGGTTTTCTTC
258 TGAGAAAATGTTGGACTTGACAGAAAATCCCAAGTTGGTAAGTATAATCTCTCTAGGTTTGCTTC
87008101 ATTTTTTCCCA
323 ATTTTTTCCCA
87008112 TACAAGATTTTGATTTTAAAAAAGCATCAGTCTTTGTTCTTTTATATATAAATCACGAGATTTGT
1 TACAAGATTTTGATTTTAAAAAAGCATCAGTCTTTGTTCTTTTATATATAAATCACGAGATTTGT
* *
87008177 TTGGTTTCTAATAAAATATTTTATTTGTGTTTGGAAGATTTTCTTCACCATTTTAGAGGGTGTCT
66 TTGGTTTCTAAGAAAATATTTTATTCGTGTTTGGAAGATTTTCTTCACCATTTTAGAGGGTGTCT
87008242 CTATTTTTCTTTCTTTCATTTTATCT-A-CAA-GGTTTTGAAATTTTGATTTAAAGAGTTACCCA
131 CTATTTTTCTTTCTTTCATTTTATCTAATCAAGGGTTTTGAAATTTTGATTTAAAGAGTTACCCA
* *
87008304 ATTGGATACGCAATCGTTGACGCTCTATAAAGTCTTAATTCCACCTCTTCATTTCATTTTCTTGA
196 ATTGGATACGCAATCGTTGACGCTCTATAAAGTCTTAATCCCACCTCTTCATTTCATTTTCCTGA
* *
87008369 GAAAATGTTGGACTTGACGGAAAATCCCAAGTTGGTAAGTATAATCTCTTTAGGTTTGCTTCATT
261 GAAAATGTTGGACTTGACAGAAAATCCCAAGTTGGTAAGTATAATCTCTCTAGGTTTGCTTCATT
87008434 TTTTCC
326 TTTTCC
87008440 GCCTTATTTA
Statistics
Matches: 312, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
330 161 0.52
332 3 0.01
333 1 0.00
336 147 0.47
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43
Consensus pattern (333 bp):
TACAAGATTTTGATTTTAAAAAAGCATCAGTCTTTGTTCTTTTATATATAAATCACGAGATTTGT
TTGGTTTCTAAGAAAATATTTTATTCGTGTTTGGAAGATTTTCTTCACCATTTTAGAGGGTGTCT
CTATTTTTCTTTCTTTCATTTTATCTAATCAAGGGTTTTGAAATTTTGATTTAAAGAGTTACCCA
ATTGGATACGCAATCGTTGACGCTCTATAAAGTCTTAATCCCACCTCTTCATTTCATTTTCCTGA
GAAAATGTTGGACTTGACAGAAAATCCCAAGTTGGTAAGTATAATCTCTCTAGGTTTGCTTCATT
TTTTCCCA
Found at i:87012181 original size:19 final size:19
Alignment explanation
Indices: 87012158--87012204 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
87012148 ATTTAATCTA
*
87012158 ATTTTTATTATTTATTTTT
1 ATTTTTATTATATATTTTT
* * *
87012177 GTTTTGATTCTATATTTTT
1 ATTTTTATTATATATTTTT
87012196 ATTTTTATT
1 ATTTTTATT
87012205 TTAATATTTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.74
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:87012207 original size:5 final size:6
Alignment explanation
Indices: 87012130--87012206 Score: 55
Period size: 6 Copynumber: 12.5 Consensus size: 6
87012120 ACTTGATATA
* * * * * * *
87012130 TTTTAT TTATAT CTTTAT ATTTAA TCTAAT TTTTAT TATTTAT TTTTGT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T-TTTAT TTTTAT
* *
87012179 TTTGAT TCTATAT TTTTAT TTTTAT TTT
1 TTTTAT T-TTTAT TTTTAT TTTTAT TTT
87012207 AATATTTAAG
Statistics
Matches: 52, Mismatches: 17, Indels: 4
0.71 0.23 0.05
Matches are distributed among these distances:
6 42 0.81
7 10 0.19
ACGTcount: A:0.22, C:0.04, G:0.03, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:87012578 original size:43 final size:43
Alignment explanation
Indices: 87012465--87012578 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 43
87012455 AATTTTTATA
* * *
87012465 AAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGTGTCGTT
1 AAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGTGCCATT
* *
87012508 AAAGGTCATGTTTTTTAGTGGCGTTTTTAGGG-AAAGTGCCATT
1 AAAGGTCATGTTCTTTAGCGGCGTTTTT-GGGAAAAGTGCCATT
* *
87012551 AAAGATCATGTTCTTTAGCGGCATTTTT
1 AAAGGTCATGTTCTTTAGCGGCGTTTTT
87012579 TCACATAAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 58 0.95
44 3 0.05
ACGTcount: A:0.23, C:0.11, G:0.27, T:0.39
Consensus pattern (43 bp):
AAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGTGCCATT
Found at i:87016554 original size:21 final size:21
Alignment explanation
Indices: 87016528--87016574 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
87016518 GGGCATTACA
87016528 ATTTATAT-ATAGAAATATATT
1 ATTTATATAATA-AAATATATT
**
87016549 ATTTATATAATAATGTATATT
1 ATTTATATAATAAAATATATT
87016570 ATTTA
1 ATTTA
87016575 CAGGGGGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (21 bp):
ATTTATATAATAAAATATATT
Found at i:87021280 original size:46 final size:46
Alignment explanation
Indices: 87021227--87021402 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
87021217 TATTTGGGCA
*
87021227 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *** * * * *
87021273 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
87021320 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
87021366 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87021403 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 70 0.66
47 36 0.34
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:87021382 original size:93 final size:93
Alignment explanation
Indices: 87021223--87021394 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
87021213 GGGATATTTG
* *
87021223 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
87021288 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCTGAGTTCGAGAGATGTAACTA
* * *
87021316 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
87021381 TTGAGTCTGAGTTC
66 TTGAGTCTGAGTTC
87021395 ACTTATGGGT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCTGAGTTCGAGAGATGTAACTA
Found at i:87027161 original size:67 final size:63
Alignment explanation
Indices: 87027018--87027200 Score: 208
Period size: 64 Copynumber: 2.9 Consensus size: 63
87027008 ATATAGTTCG
* * * *
87027018 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCA-ATTATCACGTA
1 GCTCTCTTGT-CTACATGGTGTACACTTAGAACCACCCATGCGACCTAGCTACATTATCACGTA
* * * * *
87027080 GTTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACTTAGAACCACCCATGCGACCTAGCTACAT-TATCACG
87027145 TA
62 TA
* *
87027147 GCTCTCTTGTCTACATGGTGTACACTTAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACTTAGAACCACCCATGCGACCTAGCTACAT
87027201 CATAATGTCT
Statistics
Matches: 100, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
61 1 0.01
62 17 0.17
64 29 0.29
65 24 0.24
66 2 0.02
67 27 0.27
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (63 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGAACCACCCATGCGACCTAGCTACATTATCACGTA
Found at i:87031617 original size:38 final size:38
Alignment explanation
Indices: 87031528--87031731 Score: 264
Period size: 38 Copynumber: 5.3 Consensus size: 38
87031518 AAACCCAAAC
* * * *
87031528 ATAACACCAGCACAAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTACGGGA-TTT-AACCCGGAT
* * * *
87031568 ATAATACCAGCACTAGGCCTACAGGATTTAACCCGAAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
*
87031606 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
*
87031644 ATATTACCAGCACGAAGCCTACGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
* * *
87031682 ATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
*
87031720 ATAATTCCAGCA
1 ATAATACCAGCA
87031732 TATAGCCTGC
Statistics
Matches: 146, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
38 121 0.83
39 3 0.02
40 22 0.15
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
Found at i:87031722 original size:114 final size:118
Alignment explanation
Indices: 87031533--87031760 Score: 304
Period size: 114 Copynumber: 2.0 Consensus size: 118
87031523 CAAACATAAC
* * *
87031533 ACCAGCACAAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTACAGGATTTA
1 ACCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTACAGGATTTA
87031598 ACCCGAATATAATACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGATATATT
66 ACCCGAATATAATACCAGCA-GATAGCCTGCGGGTATTTAAGCCCGGATATATT
* * * * *
87031649 ACCAGCACGAAGCCTACGGGA-TTT-AACCCGGATATATTACCAGCACAAAGCCTGCGGGATTTA
1 ACCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTACAGGATTTA
* * * *
87031712 ACCCGGATATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
66 ACCCGAATATAATACCAGCAGATAGCCTGCGGGTATTTAAGCCCGGATA
87031761 CGATCTCAGC
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
113 1 0.01
114 60 0.62
115 8 0.08
116 28 0.29
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (118 bp):
ACCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTACAGGATTTA
ACCCGAATATAATACCAGCAGATAGCCTGCGGGTATTTAAGCCCGGATATATT
Found at i:87031739 original size:38 final size:38
Alignment explanation
Indices: 87031534--87031760 Score: 235
Period size: 38 Copynumber: 5.9 Consensus size: 38
87031524 AAACATAACA
* * * * *
87031534 CCAGCACAAAGCCTACGGGACTTTAAACTCAGATATAATA
1 CCAGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATT
* * * * * *
87031574 CCAGCACTAGGCCTACAGGATTTAACCCGAATATAATA
1 CCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATT
87031612 CCAGCACGAAGCCTGCGGGATTTAACCCGGATAT-ATT
1 CCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATT
*
87031649 ACCAGCACGAAGCCTACGGGATTTAACCCGGATAT-ATT
1 -CCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATT
*
87031687 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATT
1 -CCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATT
* *
87031726 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 CCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGATA
87031761 CGATCTCAGC
Statistics
Matches: 165, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
37 3 0.02
38 126 0.76
39 11 0.07
40 25 0.15
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (38 bp):
CCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATT
Found at i:87031739 original size:76 final size:76
Alignment explanation
Indices: 87031528--87031760 Score: 281
Period size: 76 Copynumber: 3.0 Consensus size: 76
87031518 AAACCCAAAC
* * * * * * *
87031528 ATAACACCAGCACAAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTACAGG
1 ATAATACCAGCACAAAGCCTGCGGGA-TTT-AACCCGGATATAATTCCAGCACTAAGCCTACGGG
*
87031593 ATTTAACCCGAAT
64 ATTTAACCCGGAT
* *
87031606 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT-ATTACCAGCACGAAGCCTACGGGA
1 ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATT-CCAGCACTAAGCCTACGGGA
87031670 TTTAACCCGGAT
65 TTTAACCCGGAT
* *
87031682 ATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATTCCAGCA-TATAGCCTGCGGGT
1 ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATTCCAGCACTA-AGCCTACGGG-
*
87031746 CTTTAAGCCCGGAT
64 ATTTAA-CCCGGAT
87031760 A
1 A
87031761 CGATCTCAGC
Statistics
Matches: 135, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
75 3 0.02
76 90 0.67
77 11 0.08
78 31 0.23
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (76 bp):
ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATTCCAGCACTAAGCCTACGGGAT
TTAACCCGGAT
Found at i:87035696 original size:43 final size:43
Alignment explanation
Indices: 87035542--87035697 Score: 113
Period size: 43 Copynumber: 3.7 Consensus size: 43
87035532 TTTGTTCTCG
* * * *
87035542 TGTAAGA-CACGTCTAGGATGTTGGCATCGATATATGTGGTTACT
1 TGTAAGACCATGTCTAGGACGTTGGCATCG--ATATGTGATTACA
* * * * * *
87035586 TGTAAGACCATGTCTAGGACATCGGTATTG-TATTTGATT-CG
1 TGTAAGACCATGTCTAGGACGTTGGCATCGATATGTGATTACA
* * * *
87035627 TGTAAAACCCTGTCTGGGATAG-TGGCATCGATATGTGATTACA
1 TGTAAGACCATGTCTAGGA-CGTTGGCATCGATATGTGATTACA
* *
87035670 TGTAAGACCAGGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTAGGACGTTGGCAT
87035698 TGTATGATAT
Statistics
Matches: 84, Mismatches: 23, Indels: 11
0.71 0.19 0.09
Matches are distributed among these distances:
41 22 0.26
42 16 0.19
43 23 0.27
44 7 0.08
45 16 0.19
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACGTTGGCATCGATATGTGATTACA
Found at i:87043358 original size:60 final size:60
Alignment explanation
Indices: 87043265--87043379 Score: 194
Period size: 60 Copynumber: 1.9 Consensus size: 60
87043255 TAAGAATCAA
* **
87043265 AGAAATCAGATTTGGATCAGGGGAAAACCAAAGTTGTTGATTAGTGGTCCCGTTCCGATT
1 AGAAATCAGATTTGGATCAGGGGAAAACCAAAGTTGTCGATTAGTCATCCCGTTCCGATT
*
87043325 AGAAATCAGATTTGGATCGGGGGAAAACCAAAGTTGTCGATTAGTCATCCCGTTC
1 AGAAATCAGATTTGGATCAGGGGAAAACCAAAGTTGTCGATTAGTCATCCCGTTC
87043380 TAATTACTGT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (60 bp):
AGAAATCAGATTTGGATCAGGGGAAAACCAAAGTTGTCGATTAGTCATCCCGTTCCGATT
Found at i:87044526 original size:14 final size:15
Alignment explanation
Indices: 87044507--87044536 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
87044497 TGACATGGGA
87044507 TAAGTATATT-TTGG
1 TAAGTATATTCTTGG
87044521 TAAGTATATTCTTGG
1 TAAGTATATTCTTGG
87044536 T
1 T
87044537 CTATATGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.27, C:0.03, G:0.20, T:0.50
Consensus pattern (15 bp):
TAAGTATATTCTTGG
Found at i:87053018 original size:43 final size:41
Alignment explanation
Indices: 87052863--87053016 Score: 150
Period size: 43 Copynumber: 3.7 Consensus size: 41
87052853 GTGGTCTCAA
* *
87052863 GTAAGACCACG-CTTGGGACATTGGCATCGCTATGTGATTACAT
1 GTAAGACCACGTC-TAGGACATTGGCATCG-TATATGATT-CAT
* * * * *
87052906 TTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTCGT
1 GTAAGACCACGTCTAGGACATTGGCATCGTATATGATTCAT
* *
87052947 GTAAGACC-CTGTCTAGGACAGTGGCATTGATATATGATTGCAT
1 GTAAGACCAC-GTCTAGGACATTGGCATCG-TATATGATT-CAT
*
87052990 GTAAGACCACGTCTAGGACGTTGGCAT
1 GTAAGACCACGTCTAGGACATTGGCAT
87053017 TGTACGATAT
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 25 0.27
42 16 0.17
43 50 0.54
44 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (41 bp):
GTAAGACCACGTCTAGGACATTGGCATCGTATATGATTCAT
Found at i:87055691 original size:40 final size:40
Alignment explanation
Indices: 87055636--87055715 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
87055626 TTGCTGAACT
*
87055636 AAGGTTAAAGGCATTACCGAACAAAATCAGAACATTTACA
1 AAGGTTAAAGGCATTACCGAACAAAATCAGAACAATTACA
87055676 AAGGTTAAAGGCATTACCGAACAAAATCAGAACAATTACA
1 AAGGTTAAAGGCATTACCGAACAAAATCAGAACAATTACA
87055716 TTCATTTCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.19
Consensus pattern (40 bp):
AAGGTTAAAGGCATTACCGAACAAAATCAGAACAATTACA
Found at i:87057456 original size:47 final size:47
Alignment explanation
Indices: 87057397--87057518 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
87057387 GCATTGGCAC
87057397 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
87057444 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
87057491 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
87057519 CCAAGGCATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:87057626 original size:55 final size:54
Alignment explanation
Indices: 87057497--87057693 Score: 263
Period size: 55 Copynumber: 3.6 Consensus size: 54
87057487 TTGGTAAGAT
* * *
87057497 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
87057551 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
87057606 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
87057659 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
87057694 ATGGTAAGTT
Statistics
Matches: 126, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
52 4 0.03
53 33 0.26
54 42 0.33
55 43 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:87068366 original size:43 final size:41
Alignment explanation
Indices: 87068318--87068429 Score: 143
Period size: 41 Copynumber: 2.7 Consensus size: 41
87068308 GTGTTTTCAA
* *
87068318 GTAAGACCATGTTTGGGGCATTGGCATCGATATTTGATTATGT
1 GTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATT-TGT
* * *
87068361 TTAAGACCATGTCTGGTAAATTGGCATCGTATTTGATTTGT
1 GTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTGT
* *
87068402 GTAAGACCTTGTCTGGGACAGTGGCATC
1 GTAAGACCATGTCTGGGACATTGGCATC
87068430 AATTTGTGAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 26 0.44
42 9 0.15
43 24 0.41
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (41 bp):
GTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTTGT
Found at i:87068427 original size:41 final size:43
Alignment explanation
Indices: 87068318--87068471 Score: 152
Period size: 43 Copynumber: 3.6 Consensus size: 43
87068308 GTGTTTTCAA
* *
87068318 GTAAGACCATGTTTGGGGCATTGGCATCGATATTTGATTATGT
1 GTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTATGT
* * *
87068361 TTAAGACCATGTCTGGTAAATTGGCATCG-TATTTGATT-TGT
1 GTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTATGT
* * * ****
87068402 GTAAGACCTTGTCTGGGACAGTGGCATCAAT-TTGTGATTGCAC
1 GTAAGACCATGTCTGGGACATTGGCATCGATATT-TGATTATGT
* *
87068445 GTAAGACCACGTCTGGGACGTTGGCAT
1 GTAAGACCATGTCTGGGACATTGGCAT
87068472 TGTACGATAT
Statistics
Matches: 90, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 28 0.31
42 15 0.17
43 47 0.52
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTATGT
Found at i:87070157 original size:48 final size:48
Alignment explanation
Indices: 87070086--87070262 Score: 223
Period size: 48 Copynumber: 3.7 Consensus size: 48
87070076 CAGTCTCAAT
* *
87070086 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATCGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTG
* * * *
87070134 GCCGATG-CATTGTCCCAAACATGGTCTTACACTAGCTCTCGT-TACATT
1 GCCGATGCCA-TGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGTG
* * *
87070182 GCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATTGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTG
* *
87070230 GCCAATGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACT
87070263 AGCACACATG
Statistics
Matches: 110, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
47 3 0.03
48 104 0.95
49 3 0.03
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTG
Found at i:87070252 original size:96 final size:96
Alignment explanation
Indices: 87070085--87070265 Score: 301
Period size: 96 Copynumber: 1.9 Consensus size: 96
87070075 ACAGTCTCAA
* *
87070085 TGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATCGTGGCCGATGCATTGTCCC
1 TGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCAATGCATTGTCCC
87070150 AAACATGGTCTTACACTAGCTCTCGTTACAT
66 AAACATGGTCTTACACTAGCTCTCGTTACAT
* *
87070181 TGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATTGTGGCCAATGCCA-TGTCC
1 TGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCAATG-CATTGTCC
*
87070245 CAGACATGGTCTTACACTAGC
65 CAAACATGGTCTTACACTAGC
87070266 ACACATGTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
96 77 0.97
97 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.30
Consensus pattern (96 bp):
TGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCAATGCATTGTCCC
AAACATGGTCTTACACTAGCTCTCGTTACAT
Found at i:87070483 original size:25 final size:24
Alignment explanation
Indices: 87070445--87070510 Score: 87
Period size: 25 Copynumber: 2.7 Consensus size: 24
87070435 AATCATACAC
*
87070445 ACCTATAATCAACCAAGGTGACCA
1 ACCTATAATCAACCAAGGTAACCA
* * *
87070469 ACCTGATTATTAACCAAGGTAATCA
1 ACCT-ATAATCAACCAAGGTAACCA
87070494 ACCTATAATCAACCAAG
1 ACCTATAATCAACCAAG
87070511 ATACACATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 15 0.43
25 20 0.57
ACGTcount: A:0.42, C:0.26, G:0.11, T:0.21
Consensus pattern (24 bp):
ACCTATAATCAACCAAGGTAACCA
Found at i:87071346 original size:22 final size:22
Alignment explanation
Indices: 87071318--87071362 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
87071308 GCTTCCCCTA
87071318 TCGGCTAAAACTCTCTAAGTTT
1 TCGGCTAAAACTCTCTAAGTTT
*
87071340 TCGGCTACAACTCTCTAAGTTT
1 TCGGCTAAAACTCTCTAAGTTT
87071362 T
1 T
87071363 GAATTCCTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.38
Consensus pattern (22 bp):
TCGGCTAAAACTCTCTAAGTTT
Found at i:87075788 original size:15 final size:16
Alignment explanation
Indices: 87075768--87075797 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
87075758 AAATTAAATC
87075768 TCAATAAAAA-GGGAG
1 TCAATAAAAATGGGAG
87075783 TCAATAAAAATGGGA
1 TCAATAAAAATGGGA
87075798 AAAATTCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.07, G:0.23, T:0.17
Consensus pattern (16 bp):
TCAATAAAAATGGGAG
Found at i:87082535 original size:55 final size:55
Alignment explanation
Indices: 87082423--87082566 Score: 171
Period size: 55 Copynumber: 2.6 Consensus size: 55
87082413 TGTGGCATGG
* * * **
87082423 CCGTGGGTGAACCTACCAAAACAACACGGGCGTGCGACACGCCCGTGCCTTCAAA
1 CCGTGGCTAAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGCCAACAAA
* ** * *
87082478 CCGTGGCTAAACCTGTCAAATTAACACGGGCGTGCGACATGCCCGTGCCAACCAA
1 CCGTGGCTAAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGCCAACAAA
* * *
87082533 CCGTGGGTGAACCTGCCAAAACAACACGAGCGTG
1 CCGTGGCTAAACCTGCCAAAACAACACGGGCGTG
87082567 GACCTTCATA
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 73 1.00
ACGTcount: A:0.28, C:0.33, G:0.26, T:0.14
Consensus pattern (55 bp):
CCGTGGCTAAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGCCAACAAA
Found at i:87088066 original size:21 final size:20
Alignment explanation
Indices: 87088015--87088066 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
87088005 GGGTGGAAGG
*
87088015 GAAAAAGGAAGGAAGGGAAA
1 GAAAAAGAAAGGAAGGGAAA
** * *
87088035 GGGAAATAAAGGAGGGGGAAA
1 GAAAAAGAAAGGA-AGGGAAA
87088056 GAAAAAGAAAG
1 GAAAAAGAAAG
87088067 AGAGAGGTAG
Statistics
Matches: 23, Mismatches: 8, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.58, C:0.00, G:0.40, T:0.02
Consensus pattern (20 bp):
GAAAAAGAAAGGAAGGGAAA
Found at i:87091433 original size:65 final size:65
Alignment explanation
Indices: 87091324--87091455 Score: 246
Period size: 65 Copynumber: 2.0 Consensus size: 65
87091314 AAAGCATAAT
87091324 AAGATTCATCATAGGGTTCATCTCCCTTAGGTATTTAGGAAGTTTAGTTCATAATAATAATGGAA
1 AAGATTCATCATAGGGTTCATCTCCCTTAGGTATTTAGGAAGTTTAGTTCATAATAATAATGGAA
* *
87091389 AAGATTCGTCATAGGGTTCATCTCCCTTAGGTATTTAGGGAGTTTAGTTCATAATAATAATGGAA
1 AAGATTCATCATAGGGTTCATCTCCCTTAGGTATTTAGGAAGTTTAGTTCATAATAATAATGGAA
87091454 AA
1 AA
87091456 CATCTCAAAG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (65 bp):
AAGATTCATCATAGGGTTCATCTCCCTTAGGTATTTAGGAAGTTTAGTTCATAATAATAATGGAA
Found at i:87091831 original size:30 final size:30
Alignment explanation
Indices: 87091790--87091864 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
87091780 ACGGCCATGA
* * * *
87091790 CACAAGGGCGTGTGGTCTGCCCGTGTGCTT
1 CACACGGGCGTGTGGTCTACCCGTATGCCT
**
87091820 TGCACGGGCGTGTGGTCTACCCGTATGCCT
1 CACACGGGCGTGTGGTCTACCCGTATGCCT
87091850 CACACGGGCGTGTGG
1 CACACGGGCGTGTGG
87091865 ATTGCCCATG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.11, C:0.28, G:0.37, T:0.24
Consensus pattern (30 bp):
CACACGGGCGTGTGGTCTACCCGTATGCCT
Found at i:87099377 original size:18 final size:18
Alignment explanation
Indices: 87099343--87099377 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
87099333 TAGCGGTGCT
*
87099343 TAAAAGCACCGCTAAAAC
1 TAAAAGCACCGCAAAAAC
*
87099361 TAAAAGCGCCGCAAAAA
1 TAAAAGCACCGCAAAAA
87099378 AAGCTACTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.26, G:0.14, T:0.09
Consensus pattern (18 bp):
TAAAAGCACCGCAAAAAC
Found at i:87104790 original size:16 final size:16
Alignment explanation
Indices: 87104769--87104799 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87104759 AAACGAGGAA
87104769 GACCTTGCAACAGAAG
1 GACCTTGCAACAGAAG
*
87104785 GACCTTGCAATAGAA
1 GACCTTGCAACAGAA
87104800 AAGAAAGCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.16
Consensus pattern (16 bp):
GACCTTGCAACAGAAG
Found at i:87105401 original size:15 final size:15
Alignment explanation
Indices: 87105370--87105420 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
87105360 ATATTAAATA
*
87105370 TTAAATTTTTTAGTTT
1 TTAAATCTTTTA-TTT
*
87105386 TT-TATCTTTTATTT
1 TTAAATCTTTTATTT
*
87105400 TTAAATTTTTTATTT
1 TTAAATCTTTTATTT
*
87105415 TAAAAT
1 TTAAAT
87105421 TTTAAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 5 0.17
15 22 0.76
16 2 0.07
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (15 bp):
TTAAATCTTTTATTT
Found at i:87105408 original size:22 final size:22
Alignment explanation
Indices: 87105370--87105432 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
87105360 ATATTAAATA
* *
87105370 TTAAATTTTTTAGTTTTTTATCT
1 TTAAATTTTTAAATTTTTTAT-T
*
87105393 TT-TATTTTTAAATTTTTTATT
1 TTAAATTTTTAAATTTTTTATT
*
87105414 TTAAAATTTTAAATTTTTT
1 TTAAATTTTTAAATTTTTT
87105433 TGAATATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (22 bp):
TTAAATTTTTAAATTTTTTATT
Found at i:87105421 original size:15 final size:15
Alignment explanation
Indices: 87105392--87105423 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
87105382 GTTTTTTATC
*
87105392 TTTTATTTTTAAATT
1 TTTTATTTTAAAATT
87105407 TTTTATTTTAAAATT
1 TTTTATTTTAAAATT
87105422 TT
1 TT
87105424 AAATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTATTTTAAAATT
Found at i:87105452 original size:22 final size:22
Alignment explanation
Indices: 87105395--87105453 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
87105385 TTTTATCTTT
*
87105395 TATTTTTAAATTTTTTATTTTAA
1 TATTTTTAAA-TTTTTATTTGAA
*
87105418 -AATTTTAAA-TTTT-TTTGAA
1 TATTTTTAAATTTTTATTTGAA
87105437 TATTTTTATAATTTTTA
1 TATTTTTA-AATTTTTA
87105454 AATTAACATA
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
19 5 0.17
20 10 0.34
21 2 0.07
22 12 0.41
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (22 bp):
TATTTTTAAATTTTTATTTGAA
Found at i:87106151 original size:13 final size:13
Alignment explanation
Indices: 87106133--87106159 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
87106123 TAAGCCTTAA
87106133 ACCCCTAAACCCT
1 ACCCCTAAACCCT
87106146 ACCCCTAAACCCT
1 ACCCCTAAACCCT
87106159 A
1 A
87106160 AATCATAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.52, G:0.00, T:0.15
Consensus pattern (13 bp):
ACCCCTAAACCCT
Found at i:87106222 original size:21 final size:21
Alignment explanation
Indices: 87106198--87106245 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
87106188 AAACCTAACA
* *
87106198 CTTAACCCCTAACCCTTAAAC
1 CTTAAACCCGAACCCTTAAAC
*
87106219 CTTAAACCCGAGCCCTTAAAC
1 CTTAAACCCGAACCCTTAAAC
87106240 CTTAAA
1 CTTAAA
87106246 TCATAATCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.35, C:0.38, G:0.04, T:0.23
Consensus pattern (21 bp):
CTTAAACCCGAACCCTTAAAC
Found at i:87106324 original size:14 final size:14
Alignment explanation
Indices: 87106300--87106344 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
87106290 TCGTACACTT
*
87106300 TAAATCCTAAACCA
1 TAAACCCTAAACCA
*
87106314 TATACCCTAAACCA
1 TAAACCCTAAACCA
*
87106328 TAAACCCTAAACTA
1 TAAACCCTAAACCA
87106342 TAA
1 TAA
87106345 TGATAATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:87106450 original size:7 final size:7
Alignment explanation
Indices: 87106438--87106537 Score: 76
Period size: 7 Copynumber: 14.0 Consensus size: 7
87106428 ACTAATTAAT
87106438 CTAAACC
1 CTAAACC
87106445 CTAAACTC
1 CTAAAC-C
*
87106453 CTAATCC
1 CTAAACC
87106460 CTAAACC
1 CTAAACC
*
87106467 ATAAACC
1 CTAAACC
* *
87106474 ATAAATC
1 CTAAACC
*
87106481 CTAAAAC
1 CTAAACC
*
87106488 ATAAACC
1 CTAAACC
*
87106495 CTTAACC
1 CTAAACC
**
87106502 CCCAACAC
1 CTAAAC-C
87106510 CTAAACC
1 CTAAACC
*
87106517 TTAAACC
1 CTAAACC
87106524 CT-AACC
1 CTAAACC
87106530 CTTAAACC
1 C-TAAACC
87106538 ACCCTTAAAC
Statistics
Matches: 73, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
6 5 0.07
7 53 0.73
8 15 0.21
ACGTcount: A:0.43, C:0.38, G:0.00, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:87106532 original size:14 final size:14
Alignment explanation
Indices: 87106509--87106577 Score: 56
Period size: 14 Copynumber: 5.1 Consensus size: 14
87106499 ACCCCCAACA
*
87106509 CCTAAACCTTAAAC
1 CCTAACCCTTAAAC
87106523 CCTAACCCTTAAA-
1 CCTAACCCTTAAAC
87106536 CC--ACCCTTAAAC
1 CCTAACCCTTAAAC
*
87106548 CATAATCCC-TAAAC
1 CCTAA-CCCTTAAAC
* *
87106562 CCATAATCCATAAAC
1 CC-TAACCCTTAAAC
87106577 C
1 C
87106578 TTAAAATAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
11 9 0.20
12 1 0.02
13 2 0.04
14 21 0.47
15 12 0.27
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (14 bp):
CCTAACCCTTAAAC
Found at i:87106545 original size:25 final size:25
Alignment explanation
Indices: 87106515--87106562 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
87106505 AACACCTAAA
*
87106515 CCTTAAACCCTAA-CCCTTAAACCAC
1 CCTTAAACCATAATCCC-TAAACCAC
87106540 CCTTAAACCATAATCCCTAAACC
1 CCTTAAACCATAATCCCTAAACC
87106563 CATAATCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.38, C:0.42, G:0.00, T:0.21
Consensus pattern (25 bp):
CCTTAAACCATAATCCCTAAACCAC
Found at i:87106565 original size:15 final size:15
Alignment explanation
Indices: 87106543--87106577 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
87106533 AAACCACCCT
*
87106543 TAAA-CCATAATCCC
1 TAAACCCATAATCCA
87106557 TAAACCCATAATCCA
1 TAAACCCATAATCCA
87106572 TAAACC
1 TAAACC
87106578 TTAAAATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:87106582 original size:22 final size:22
Alignment explanation
Indices: 87106538--87106582 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
87106528 CCCTTAAACC
* *
87106538 ACCCTTAAACCATAATCCCTAA
1 ACCCATAAACCATAAACCCTAA
* *
87106560 ACCCATAATCCATAAACCTTAA
1 ACCCATAAACCATAAACCCTAA
87106582 A
1 A
87106583 ATAGTAACTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.22
Consensus pattern (22 bp):
ACCCATAAACCATAAACCCTAA
Found at i:87106950 original size:40 final size:39
Alignment explanation
Indices: 87106906--87107014 Score: 116
Period size: 41 Copynumber: 2.7 Consensus size: 39
87106896 CAAGTATTAA
*
87106906 CGGCGTTTTTCAAAAAGCGCCGCTAAAGGT-G-TACATATAG
1 CGGCGTTTTT-AAAAAGCGCCGCTAAAGCTCGAT-C-TATAG
* *
87106946 CGGCGTTTCTTAAAAAAGCACCGCTAATA-CTCGATCTTTAG
1 CGGCGTTT-TT-AAAAAGCGCCGCTAA-AGCTCGATCTATAG
87106987 CGGCGTTTTTAAAAAGCGCCGCTAAAGC
1 CGGCGTTTTTAAAAAGCGCCGCTAAAGC
87107015 CACTAAAAGC
Statistics
Matches: 59, Mismatches: 5, Indels: 11
0.79 0.07 0.15
Matches are distributed among these distances:
38 1 0.02
39 15 0.25
40 10 0.17
41 29 0.49
42 3 0.05
43 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (39 bp):
CGGCGTTTTTAAAAAGCGCCGCTAAAGCTCGATCTATAG
Found at i:87107266 original size:155 final size:155
Alignment explanation
Indices: 87106908--87107242 Score: 474
Period size: 156 Copynumber: 2.2 Consensus size: 155
87106898 AGTATTAACG
*
87106908 GCGTTTTTCAAAAAGCGCCGCTAAAGGTGTACATATAGCGGCGTTTCTTAAAAAAGCACCGCTAA
1 GCGTTTTTCAAAAAACGCCGCTAAAGGTGTACATATAGCGGCGTTT-TTAAAAAAGCACCGCTAA
87106973 TACTCGATCTTTAGCGGCGTTTTTAAAAAGCGCCGCTAAAGCCACTAAAAGCTCAAAACAAAACG
65 TACTCGATCTTTAGCGGCGTTTTTAAAAAGCGCCGCTAAAGCCACTAAAAGCTCAAAACAAAACG
** *
87107038 ACGGCATTTTGCAAAATTCTTTTGCA
130 ACAACATTGTGCAAAATTCTTTTGCA
* * * * *
87107064 GCGTTTTCCAAAAAACGCCTCTAAAGGTGTACATATAACGGCGTTTTTAAAAGAGCGCCGCTAAT
1 GCGTTTTTCAAAAAACGCCGCTAAAGGTGTACATATAGCGGCGTTTTTAAAAAAGCACCGCTAAT
* * ** * **
87107129 ACTTGATCTTTAGCGGTGTTTTTAAAAAAGCGTTGCTAAAGCCACTAAAGGCTCAATTCAAAACG
66 ACTCGATCTTTAGCGGCGTTTTT-AAAAAGCGCCGCTAAAGCCACTAAAAGCTCAAAACAAAACG
* **
87107194 ACAACGTTGTGTTAAATT-TTTTGCA
130 ACAACATTGTGCAAAATTCTTTTGCA
87107219 GCGTTTTTCAAAAAACGCCGCTAA
1 GCGTTTTTCAAAAAACGCCGCTAA
87107243 TGCTCGTTCT
Statistics
Matches: 157, Mismatches: 21, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
155 67 0.43
156 90 0.57
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (155 bp):
GCGTTTTTCAAAAAACGCCGCTAAAGGTGTACATATAGCGGCGTTTTTAAAAAAGCACCGCTAAT
ACTCGATCTTTAGCGGCGTTTTTAAAAAGCGCCGCTAAAGCCACTAAAAGCTCAAAACAAAACGA
CAACATTGTGCAAAATTCTTTTGCA
Found at i:87111556 original size:28 final size:27
Alignment explanation
Indices: 87111364--87111788 Score: 724
Period size: 27 Copynumber: 15.6 Consensus size: 27
87111354 TAAATTGTGC
*
87111364 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
87111391 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
87111418 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
87111445 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
87111472 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
87111499 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
87111526 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
87111554 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
87111581 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
87111608 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
87111636 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
87111664 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
87111692 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* * *
87111720 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
87111747 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
87111774 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87111789 GACTTAATAT
Statistics
Matches: 386, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
27 250 0.65
28 136 0.35
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:87122008 original size:27 final size:28
Alignment explanation
Indices: 87121978--87122034 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
87121968 ATTTTTGATG
87121978 AAATGAGCTATTTG-GG-CTAATTTGTGA
1 AAATGAGCT-TTTGAGGACTAATTTGTGA
*
87122005 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGCTTTTG-AGGACTAATTTGTGA
87122034 A
1 A
87122035 TTTAACATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.35
Consensus pattern (28 bp):
AAATGAGCTTTTGAGGACTAATTTGTGA
Found at i:87130090 original size:138 final size:138
Alignment explanation
Indices: 87129842--87130119 Score: 529
Period size: 138 Copynumber: 2.0 Consensus size: 138
87129832 GTGTTCATGT
*
87129842 CTAGTTAAGCCCTATTTTCCTCTACTTCTGCAAAAAATCTCATCAGCTTAGGCATATGTTCTTTG
1 CTAGTTAAGCCCTATTTTCCTCTACTTCTGCAAAAAATCTCATAAGCTTAGGCATATGTTCTTTG
*
87129907 ACCAGAGTGTCGCATTTCTACTAAGAGTTCATCAAATTTGTAATAGCAAATTGTAGAGTCAATGA
66 ACCAGAGTGTCGCATTTCTACTAAGAGTTCATCAAATTTGTAATAGAAAATTGTAGAGTCAATGA
87129972 AACTCGGC
131 AACTCGGC
*
87129980 CTAGTTAAGCCCTATTTTCCTTTACTTCTGCAAAAAATCTCATAAGCTTAGGCATATGTTCTTTG
1 CTAGTTAAGCCCTATTTTCCTCTACTTCTGCAAAAAATCTCATAAGCTTAGGCATATGTTCTTTG
87130045 ACCAGAGTGTCGCATTTCTACTAAGAGTTCATCAAATTTGTAATAGAAAATTGTAGAGTCAATGA
66 ACCAGAGTGTCGCATTTCTACTAAGAGTTCATCAAATTTGTAATAGAAAATTGTAGAGTCAATGA
87130110 AACTCGGC
131 AACTCGGC
87130118 CT
1 CT
87130120 CCGAACAAAT
Statistics
Matches: 137, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
138 137 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (138 bp):
CTAGTTAAGCCCTATTTTCCTCTACTTCTGCAAAAAATCTCATAAGCTTAGGCATATGTTCTTTG
ACCAGAGTGTCGCATTTCTACTAAGAGTTCATCAAATTTGTAATAGAAAATTGTAGAGTCAATGA
AACTCGGC
Found at i:87130744 original size:34 final size:35
Alignment explanation
Indices: 87130678--87130755 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 35
87130668 CTGTATTGAG
* *
87130678 ATGGGCTTAGGCCCAGACTGTTTACTGATACTAAA
1 ATGGGCTTAAGCCCAAACTGTTTACTGATACTAAA
* *
87130713 ATGGGCTTAAGCCCAAACTG-TTACTGTTACTAAT
1 ATGGGCTTAAGCCCAAACTGTTTACTGATACTAAA
87130747 ATGGGCTTA
1 ATGGGCTTA
87130756 GACCCAGAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
34 21 0.54
35 18 0.46
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (35 bp):
ATGGGCTTAAGCCCAAACTGTTTACTGATACTAAA
Found at i:87133964 original size:27 final size:26
Alignment explanation
Indices: 87133934--87134028 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 26
87133924 TTTTGCCCTT
87133934 ATAGGATAAAATGACCGAAATACCTCC
1 ATAGGATAAAATGACCGAAATACC-CC
*
87133961 ATAGGGTAAAATGACCGAAATACCCC
1 ATAGGATAAAATGACCGAAATACCCC
** * *
87133987 AGTAGGATAAAATGATTGTAATTCCCC
1 A-TAGGATAAAATGACCGAAATACCCC
*
87134014 TATAGGGTAAAATGA
1 -ATAGGATAAAATGA
87134029 ATGTTTTGCC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.05
27 55 0.93
28 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (26 bp):
ATAGGATAAAATGACCGAAATACCCC
Found at i:87137999 original size:25 final size:26
Alignment explanation
Indices: 87137952--87138000 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
87137942 TCTCATCCCT
*
87137952 ATTTTACCCCTAGTAAAATTTTGATG
1 ATTTTACCCCGAGTAAAATTTTGATG
*
87137978 ATTTTACCCCGA-TAAAGTTTTGA
1 ATTTTACCCCGAGTAAAATTTTGA
87138001 CAATTTTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (26 bp):
ATTTTACCCCGAGTAAAATTTTGATG
Found at i:87138008 original size:26 final size:26
Alignment explanation
Indices: 87137952--87138007 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
87137942 TCTCATCCCT
* **
87137952 ATTTTACCCCTAGTAAAATTTTGATG
1 ATTTTACCCCGAGTAAAATTTTGACA
*
87137978 ATTTTACCCCGA-TAAAGTTTTGACA
1 ATTTTACCCCGAGTAAAATTTTGACA
87138003 ATTTT
1 ATTTT
87138008 TCTCTTGGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (26 bp):
ATTTTACCCCGAGTAAAATTTTGACA
Found at i:87139353 original size:54 final size:53
Alignment explanation
Indices: 87139278--87139436 Score: 196
Period size: 54 Copynumber: 3.0 Consensus size: 53
87139268 TAGAATTACT
*
87139278 GTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTTGTAAAATTATC
1 GTTTTACCCTCGATTTACAGAATTA-CGTTTTACCCTCGATTTGTAAAATTATC
* * * **
87139332 GTTTTACCCTTGATTTACAGAAATACTGGTTTACCCTC-AGTTTACAAAATTATC
1 GTTTTACCCTCGATTTACAGAATTAC-GTTTTACCCTCGA-TTTGTAAAATTATC
* *
87139386 GTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGA-TTGTGAAATTA
1 GTTTTACCCTCGATTTACAGAATTA-CGTTTTACCCTCGATTTGTAAAATTA
87139437 CTAAAATACC
Statistics
Matches: 88, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
53 10 0.11
54 76 0.86
55 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (53 bp):
GTTTTACCCTCGATTTACAGAATTACGTTTTACCCTCGATTTGTAAAATTATC
Found at i:87139410 original size:81 final size:81
Alignment explanation
Indices: 87139264--87139427 Score: 247
Period size: 81 Copynumber: 2.0 Consensus size: 81
87139254 GAGGACTCAG
* * * * **
87139264 TTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTTGTAAAATT
1 TTTACAGAAATACTGGTTTACCCTCAATTTACAAAATTATCGTTTTACCCTCGATTTACAAAATT
*
87139329 ATCGTTTTACCCTTGA
66 ACCGTTTTACCCTTGA
* *
87139345 TTTACAGAAATACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAATT
1 TTTACAGAAATACTGGTTTACCCTCAATTTACAAAATTATCGTTTTACCCTCGATTTACAAAATT
87139410 ACCGTTTTACCCTTGA
66 ACCGTTTTACCCTTGA
87139426 TT
1 TT
87139428 GTGAAATTAC
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.42
Consensus pattern (81 bp):
TTTACAGAAATACTGGTTTACCCTCAATTTACAAAATTATCGTTTTACCCTCGATTTACAAAATT
ACCGTTTTACCCTTGA
Found at i:87139427 original size:27 final size:27
Alignment explanation
Indices: 87139264--87139427 Score: 177
Period size: 27 Copynumber: 6.1 Consensus size: 27
87139254 GAGGACTCAG
* * *
87139264 TTTATAGAATTACTGTTTTACCCTCAA
1 TTTACAGAATTACCGTTTTACCCTCGA
*
87139291 TTTACAGAATTATCGTTTTACCCTCGA
1 TTTACAGAATTACCGTTTTACCCTCGA
** * * *
87139318 TTTGTAAAATTATCGTTTTACCCTTGA
1 TTTACAGAATTACCGTTTTACCCTCGA
* * *
87139345 TTTACAGAAATACTGGTTTACCCTC-A
1 TTTACAGAATTACCGTTTTACCCTCGA
* *
87139371 GTTTACAAAATTATCGTTTTACCCTCGA
1 -TTTACAGAATTACCGTTTTACCCTCGA
*
87139399 TTTACAGAATTACCGTTTTACCCTTGA
1 TTTACAGAATTACCGTTTTACCCTCGA
87139426 TT
1 TT
87139428 GTGAAATTAC
Statistics
Matches: 111, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 109 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.42
Consensus pattern (27 bp):
TTTACAGAATTACCGTTTTACCCTCGA
Found at i:87142445 original size:27 final size:26
Alignment explanation
Indices: 87142407--87142489 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
87142397 CGAAGGAAGC
*
87142407 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
87142434 GTTCTGGTGGCTCTACCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
87142460 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
87142487 GTT
1 GTT
87142490 GACCGATCTA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:87142822 original size:27 final size:27
Alignment explanation
Indices: 87142800--87142873 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
87142790 TAGGTGGGTT
*
87142800 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
87142827 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
87142854 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
87142874 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:87143024 original size:6 final size:6
Alignment explanation
Indices: 87143013--87143062 Score: 59
Period size: 6 Copynumber: 8.3 Consensus size: 6
87143003 ATTTTGTCAC
*
87143013 CTGATT CTGATT CTG-TT ACTAATAT -TGATT CTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT -CTGAT-T CTGATT CTGATT CTGATT CTGATT
87143061 CT
1 CT
87143063 CATTTTGGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
5 3 0.08
6 33 0.87
7 1 0.03
8 1 0.03
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
CTGATT
Found at i:87143059 original size:18 final size:18
Alignment explanation
Indices: 87142997--87143062 Score: 64
Period size: 18 Copynumber: 3.6 Consensus size: 18
87142987 TCACATTCTA
* *
87142997 ATTCTGATTTTGTCACCTG
1 ATTCTGATTCTGTTA-CTG
*
87143016 ATTCTGATTCTGTTACTA
1 ATTCTGATTCTGTTACTG
87143034 ATAT-TGATTCTGATT-CTG
1 AT-TCTGATTCTG-TTACTG
87143052 ATTCTGATTCT
1 ATTCTGATTCT
87143063 CATTTTGGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 1 0.03
18 23 0.57
19 16 0.40
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (18 bp):
ATTCTGATTCTGTTACTG
Found at i:87144426 original size:17 final size:17
Alignment explanation
Indices: 87144404--87144437 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
87144394 CATGATCCTG
*
87144404 CGATTAAGGCGAGGGAA
1 CGATTAAGGCGACGGAA
87144421 CGATTAAGGCGACGGAA
1 CGATTAAGGCGACGGAA
87144438 TCCCATGCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.15, G:0.38, T:0.12
Consensus pattern (17 bp):
CGATTAAGGCGACGGAA
Found at i:87145182 original size:42 final size:42
Alignment explanation
Indices: 87145123--87145207 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
87145113 GTGAACGAAG
87145123 CGAGTCCTAATCATCCATAAAGAGAAGCAGTTGAGGCTTGGA
1 CGAGTCCTAATCATCCATAAAGAGAAGCAGTTGAGGCTTGGA
87145165 CGAGTCCTAATCATCCATAAAGAGAAGCAGTTGAGGCTTGGA
1 CGAGTCCTAATCATCCATAAAGAGAAGCAGTTGAGGCTTGGA
87145207 C
1 C
87145208 TTACACTCAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (42 bp):
CGAGTCCTAATCATCCATAAAGAGAAGCAGTTGAGGCTTGGA
Found at i:87148098 original size:45 final size:45
Alignment explanation
Indices: 87148035--87148249 Score: 243
Period size: 45 Copynumber: 5.0 Consensus size: 45
87148025 TATTGTACCG
* *
87148035 TACTATTC-GGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
87148079 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGATGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
87148124 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
87148169 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTG-GA
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* ** *
87148210 TGA--ATTCGGG-TTTAAAACCTAGCAGGCTA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
87148250 TTTGATAAAA
Statistics
Matches: 153, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
40 1 0.01
41 33 0.22
42 10 0.07
43 18 0.12
44 13 0.08
45 77 0.50
46 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:87155828 original size:45 final size:45
Alignment explanation
Indices: 87155761--87155921 Score: 211
Period size: 45 Copynumber: 3.6 Consensus size: 45
87155751 ATTGTACCGA
*
87155761 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCTGGTGAGAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGAT
* * * *
87155806 ACTATTCAGGCCTTTGAACCTAGCAAGCTATAATGCCGGTGAGAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGAT
* * *
87155851 ACTATTCGGGCCTTCGAGCCTTGCAGGCTATAATGCTGGTGAAAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGAT
*
87155896 GA-TA-TCGGG-CTTCGAGCCTAGCAGGC
1 -ACTATTCGGGCCTTTGAGCCTAGCAGGC
87155922 GAAATGCCGG
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
43 16 0.16
44 5 0.05
45 80 0.78
46 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGAT
Found at i:87164430 original size:19 final size:19
Alignment explanation
Indices: 87164408--87164445 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
87164398 TTTTTATACT
87164408 TTTAAATAATCTTT-AAATA
1 TTTAAATAAT-TTTCAAATA
87164427 TTTAAATAATTTTCAAATA
1 TTTAAATAATTTTCAAATA
87164446 AAATAATTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
TTTAAATAATTTTCAAATA
Found at i:87164555 original size:12 final size:13
Alignment explanation
Indices: 87164527--87164558 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
87164517 CCACTAATTG
87164527 AAATA-ATTTTAT
1 AAATATATTTTAT
87164539 AAATATATTTTAT
1 AAATATATTTTAT
87164552 -AATATAT
1 AAATATAT
87164559 AATATTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AAATATATTTTAT
Found at i:87164568 original size:16 final size:14
Alignment explanation
Indices: 87164529--87164568 Score: 55
Period size: 13 Copynumber: 2.8 Consensus size: 14
87164519 ACTAATTGAA
87164529 ATAATTTTATAAAT
1 ATAATTTTATAAAT
87164543 AT-ATTTTATAATAT
1 ATAATTTTATAA-AT
87164557 ATAATATTTATA
1 ATAAT-TTTATA
87164569 TTCACCCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 9 0.39
14 6 0.26
15 2 0.09
16 6 0.26
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATAATTTTATAAAT
Found at i:87169391 original size:48 final size:48
Alignment explanation
Indices: 87169320--87169598 Score: 386
Period size: 48 Copynumber: 5.8 Consensus size: 48
87169310 ATGAGATTCC
* *
87169320 GTGTAAGTCCATGTCTAGGACATGGCATC-GC-ATCCGAGA-AGTGTGCCT
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGAT--GATATA-TGTGCCT
*
87169368 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATGTGCCT
* * *
87169416 GTGTAAGACCATGTCTGGGACATGACATCAGCGATGATATATGTGCCT
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATGTGCCT
* * * *
87169464 ATGTAAGACCATGTATGGGA-ATGGCATCGGCGATGATATACGTGCCT
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATGTGCCT
*
87169511 GTGTAAGACCATGTCTAGGACATGGCATCGGCAATGATATATGTGCCT
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATGTGCCT
* *
87169559 TTGTAAGACCATGTCTAGGACATGGCATTGGCGATGATAT
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATAT
87169599 GTGAAATCAT
Statistics
Matches: 209, Mismatches: 18, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 41 0.20
48 163 0.78
49 3 0.01
50 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATGTGCCT
Found at i:87169524 original size:95 final size:96
Alignment explanation
Indices: 87169320--87169598 Score: 386
Period size: 95 Copynumber: 2.9 Consensus size: 96
87169310 ATGAGATTCC
* * * *
87169320 GTGTAAGTCCATGTCTAGGACATGGCATC-GC-ATCCGAGA-AGTGTGCCTGTGTAAGACCATGT
1 GTGTAAGACCATGTCTAGGACATGACATCAGCAAT--GATATA-TGTGCCTATGTAAGACCATGT
*
87169382 CTGGGACATGGCATCGGCGATGATATATGTGCCT
63 CTGGGACATGGCATCGGCGATGATATACGTGCCT
* * *
87169416 GTGTAAGACCATGTCTGGGACATGACATCAGCGATGATATATGTGCCTATGTAAGACCATGTATG
1 GTGTAAGACCATGTCTAGGACATGACATCAGCAATGATATATGTGCCTATGTAAGACCATGTCTG
87169481 GGA-ATGGCATCGGCGATGATATACGTGCCT
66 GGACATGGCATCGGCGATGATATACGTGCCT
* * * *
87169511 GTGTAAGACCATGTCTAGGACATGGCATCGGCAATGATATATGTGCCTTTGTAAGACCATGTCTA
1 GTGTAAGACCATGTCTAGGACATGACATCAGCAATGATATATGTGCCTATGTAAGACCATGTCTG
*
87169576 GGACATGGCATTGGCGATGATAT
66 GGACATGGCATCGGCGATGATAT
87169599 GTGAAATCAT
Statistics
Matches: 164, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
95 87 0.53
96 72 0.44
97 3 0.02
98 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (96 bp):
GTGTAAGACCATGTCTAGGACATGACATCAGCAATGATATATGTGCCTATGTAAGACCATGTCTG
GGACATGGCATCGGCGATGATATACGTGCCT
Found at i:87170985 original size:21 final size:21
Alignment explanation
Indices: 87170959--87170998 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
87170949 TCTCAATGTC
87170959 GATGCCATGTCCCAGAGATAG
1 GATGCCATGTCCCAGAGATAG
87170980 GATGCCATGTCCCAGAGAT
1 GATGCCATGTCCCAGAGAT
87170999 GGTCTTACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.20
Consensus pattern (21 bp):
GATGCCATGTCCCAGAGATAG
Found at i:87181654 original size:48 final size:48
Alignment explanation
Indices: 87181143--87181656 Score: 555
Period size: 48 Copynumber: 10.8 Consensus size: 48
87181133 TAAAGTACCA
* ** * *
87181143 ATGCCATGTCCTC-GACATGGTCTTACATGAATC-CACATATCATC-AACG
1 ATGCCATGTCC-CAGACATGGTCTTACA-CAGGCACATATATCATCGCA-G
* * *
87181191 ATGCCATGCCCCAGACATAGTCTTACACTGGCACATATCATCAT--C-G
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATAT-ATCATCGCAG
* ** * *
87181237 ATGCCATGTCCTC-GACATGGTCTTACATGAATC-CACATATCATC-AACG
1 ATGCCATGTCC-CAGACATGGTCTTACA-CAGGCACATATATCATCGCA-G
* * * * *
87181285 ATGCCATGCCCCAGACATAGTCTTACACTGGCACACATATCATCATC-G
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATC-GCAG
* * * *
87181333 ATGCCATGTCCTC-GACATGGTCTTACACTGGCATATATATCATCACCG
1 ATGCCATGTCC-CAGACATGGTCTTACACAGGCACATATATCATCGCAG
*
87181381 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCAG
* * *
87181429 ATGCCATGTCCCAAACATGGTCTTTCACAGGCACATATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCAG
*
87181477 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCAG
* *
87181525 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCAG
* * * * *
87181573 GTACCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTGCAG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCAG
*
87181621 ATGCCATGTCCCAAACATGGTCTTACACAGGCACAT
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
87181657 TGTAACACCC
Statistics
Matches: 401, Mismatches: 50, Indels: 30
0.83 0.10 0.06
Matches are distributed among these distances:
45 5 0.01
46 28 0.07
47 8 0.02
48 354 0.88
49 6 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCAG
Found at i:87182043 original size:13 final size:13
Alignment explanation
Indices: 87182022--87182057 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
87182012 TTGAGCACAC
*
87182022 GCCCGTGTCCCTA
1 GCCCATGTCCCTA
87182035 GCCCATGTCCCTA
1 GCCCATGTCCCTA
87182048 GCCCATGTCC
1 GCCCATGTCC
87182058 TTCACACGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.47, G:0.19, T:0.22
Consensus pattern (13 bp):
GCCCATGTCCCTA
Found at i:87194996 original size:38 final size:38
Alignment explanation
Indices: 87194952--87195027 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
87194942 TCGTTCTCTG
87194952 TGTATCTTAAGCTTCGCCTTATTTCTCTTTGGTTTCTA
1 TGTATCTTAAGCTTCGCCTTATTTCTCTTTGGTTTCTA
87194990 TGTATCTTAAGCTTCGCCTTATTTCTCTTTGGTTTCTA
1 TGTATCTTAAGCTTCGCCTTATTTCTCTTTGGTTTCTA
87195028 CGAACTGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.13, C:0.21, G:0.13, T:0.53
Consensus pattern (38 bp):
TGTATCTTAAGCTTCGCCTTATTTCTCTTTGGTTTCTA
Found at i:87197058 original size:41 final size:41
Alignment explanation
Indices: 87196943--87197092 Score: 203
Period size: 41 Copynumber: 3.7 Consensus size: 41
87196933 CGCTGACTCA
* *
87196943 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * * *
87196984 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTT
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
87197024 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTAGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
87197065 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
87197093 TAAACCCCGA
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 60 0.66
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:87203836 original size:40 final size:41
Alignment explanation
Indices: 87203747--87203896 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
87203737 CGCTGACTCA
* *
87203747 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * * *
87203788 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTT
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
87203828 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
87203869 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
87203897 TAAACCCCGA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 61 0.66
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:87211151 original size:15 final size:15
Alignment explanation
Indices: 87211131--87211160 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
87211121 AGCCGTGTCT
87211131 CTACCCGTGTGTTTA
1 CTACCCGTGTGTTTA
87211146 CTACCCGTGTGTTTA
1 CTACCCGTGTGTTTA
87211161 TGACATCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.20, T:0.40
Consensus pattern (15 bp):
CTACCCGTGTGTTTA
Found at i:87218166 original size:23 final size:25
Alignment explanation
Indices: 87218140--87218186 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
87218130 TATCATTCAT
*
87218140 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
87218163 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
87218187 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:87220750 original size:31 final size:30
Alignment explanation
Indices: 87220671--87220750 Score: 74
Period size: 31 Copynumber: 2.6 Consensus size: 30
87220661 ATACTAATAA
* *
87220671 AATAATAAT-AAAATATCTTATTAAATTATT
1 AATAA-AATAAAAATATCTAATTAAATAATT
**
87220701 AATAAAATAATATTTATCTAATTAAATAATT
1 AATAAAATAA-AAATATCTAATTAAATAATT
87220732 -ATAAAATATCAAAATATCT
1 AATAAAATA--AAAATATCT
87220751 CTAGCATCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
29 3 0.08
30 14 0.35
31 22 0.55
32 1 0.03
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (30 bp):
AATAAAATAAAAATATCTAATTAAATAATT
Found at i:87222520 original size:48 final size:48
Alignment explanation
Indices: 87222449--87222764 Score: 290
Period size: 48 Copynumber: 6.6 Consensus size: 48
87222439 TAAAGTACCA
* * * * *
87222449 ATGCCATGTCCCTGACATGGTCTTATATGAATC-CACATATCAACGCTG
1 ATGCCATGTCCCAGACATGGTCTTACATG-AGCACATATATCATCGCTG
* * *
87222497 ATGCCATGTCCCAGACATGGTCTTATACTG-GCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGAGCACATATATCATCGCTG
* *
87222545 ATGCCATGTCCCACATC-TGGTCTTACACTG-GCACATATATCATCGCCG
1 ATGCCATGTCCCAGA-CATGGTCTTACA-TGAGCACATATATCATCGCTG
* *
87222593 ATGCCATGTCCCACACATGGTCTTACA-CAGGCACATATATCATCG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACATGA-GCACATATATCATCGCT-G
* * *
87222641 ATGCCATGTCCCAGACATAGTCTTACA-CAGGCACATATATTATCG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACATGA-GCACATATATCATCGCT-G
* * * *
87222689 ATGCCATGTCCCAGACATGGTCTTACACTG-GCACACATATCACCACCG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGAGCACATATATCATCGCTG
* * *
87222737 ATGCCATGCCCCAAACATGGTGTTACAT
1 ATGCCATGTCCCAGACATGGTCTTACAT
87222765 AAGAACATTT
Statistics
Matches: 236, Mismatches: 22, Indels: 21
0.85 0.08 0.08
Matches are distributed among these distances:
47 3 0.01
48 230 0.97
49 3 0.01
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAGCACATATATCATCGCTG
Found at i:87222613 original size:96 final size:96
Alignment explanation
Indices: 87222485--87222763 Score: 380
Period size: 96 Copynumber: 2.9 Consensus size: 96
87222475 ATGAATCCAC
* * *
87222485 ATATCAACGCTGATGCCATGTCCCAGACATGGTCTTATACTGGCACACATATCATCGCCGATGCC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCC
* *
87222550 ATGTCCCACATC-TGGTCTTACACTGGCACAT
66 ATGTCCCACA-CATAGTCTTACACAGGCACAT
* * * *
87222581 ATATCATCGCCGATGCCATGTCCCACACATGGTCTTACACAGGCACATATATCATCGTCGATGCC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCC
*
87222646 ATGTCCCAGACATAGTCTTACACAGGCACAT
66 ATGTCCCACACATAGTCTTACACAGGCACAT
* * * *
87222677 ATATTATCGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCACCACCGATGCC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCC
* * * *
87222742 ATGCCCCAAACATGGTGTTACA
66 ATGTCCCACACATAGTCTTACA
87222764 TAAGAACATT
Statistics
Matches: 160, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
95 1 0.01
96 159 0.99
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (96 bp):
ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCC
ATGTCCCACACATAGTCTTACACAGGCACAT
Found at i:87222710 original size:144 final size:144
Alignment explanation
Indices: 87222496--87222763 Score: 403
Period size: 144 Copynumber: 1.9 Consensus size: 144
87222486 TATCAACGCT
* * *
87222496 GATGCCATGTCCCAGACATGGTCTTATACTGGCACACATATCATCGCCGATGCCATGTCCCACAT
1 GATGCCATGTCCCAGACATAGTCTTACACAGGCACACATATCATCGCCGATGCCATGTCCCACAT
* * * * *
87222561 CTGGTCTTACACTGGCACATATATCATCGCCGATGCCATGTCCCACACATGGTCTTACACAGGCA
66 CTGGTCTTACACTGGCACACATATCACCACCGATGCCATGCCCCAAACATGGTCTTACACAGGCA
87222626 CATATATCATCGTC
131 CATATATCATCGTC
* * * *
87222640 GATGCCATGTCCCAGACATAGTCTTACACAGGCACATATATTATCGTCGATGCCATGTCCCAGA-
1 GATGCCATGTCCCAGACATAGTCTTACACAGGCACACATATCATCGCCGATGCCATGTCCCACAT
*
87222704 CATGGTCTTACACTGGCACACATATCACCACCGATGCCATGCCCCAAACATGGTGTTACA
66 C-TGGTCTTACACTGGCACACATATCACCACCGATGCCATGCCCCAAACATGGTCTTACA
87222764 TAAGAACATT
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
143 1 0.01
144 109 0.99
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (144 bp):
GATGCCATGTCCCAGACATAGTCTTACACAGGCACACATATCATCGCCGATGCCATGTCCCACAT
CTGGTCTTACACTGGCACACATATCACCACCGATGCCATGCCCCAAACATGGTCTTACACAGGCA
CATATATCATCGTC
Found at i:87225647 original size:57 final size:56
Alignment explanation
Indices: 87225583--87225695 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 56
87225573 TTAATGAGTC
* *
87225583 TAGTTTCTTATACAACAAACCGTGTAAGCAAAATAATTTCCGATAATGAGATATTT
1 TAGTTTCTTATAAAACAAACCGTGTAAGCAAAAGAATTTCCGATAATGAGATATTT
87225639 NTAGTTTCTTATAAAACAAACCGTGTAAGCAAAAGAATTTCCGATAATGAGATATTT
1 -TAGTTTCTTATAAAACAAACCGTGTAAGCAAAAGAATTTCCGATAATGAGATATTT
87225696 GAAGTGATGT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (56 bp):
TAGTTTCTTATAAAACAAACCGTGTAAGCAAAAGAATTTCCGATAATGAGATATTT
Found at i:87226846 original size:43 final size:43
Alignment explanation
Indices: 87226784--87226921 Score: 249
Period size: 43 Copynumber: 3.2 Consensus size: 43
87226774 GTAAATTATT
*
87226784 CTAGCAGGCTTCGTGCCGGTGGTGTGTATTCGGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
* *
87226827 CTAGCAGGCTTAGTACCGGTGATGTGTATTCGGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
87226870 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
87226913 CTAGCAGGC
1 CTAGCAGGC
87226922 GTAATGCCGG
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.11, C:0.25, G:0.35, T:0.29
Consensus pattern (43 bp):
CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
Found at i:87232878 original size:48 final size:46
Alignment explanation
Indices: 87232807--87233073 Score: 315
Period size: 48 Copynumber: 5.6 Consensus size: 46
87232797 TGAGATTCCA
* * * *
87232807 TGTAAGTCCATGTCTAGGACATGGCATGGCATTCGA-GA-AGTGTGTCTG
1 TGTAAGACCATGTCTGGGACATGGCAT--CA-GCGATGATA-TGTGCCTG
87232855 TGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCGATG--ATATGTGCCTG
* *
87232903 TGTAAGACCATGTTTGGGACATGGCATCAGCGATGATATATGTGCTTG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCGATG--ATATGTGCCTG
87232951 TGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCGATG--ATATGTGCCTG
* * *
87232999 TGTAAGACCATGTCTGGTACATGGCATCGGTGATGATATATGTGCCAT-
1 TGTAAGACCATGTCTGGGACATGGCATCAGCGATG--ATATGTGCC-TG
87233047 TGTAAGACCATGTCTGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
87233074 TAGTACTTTA
Statistics
Matches: 202, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
45 3 0.01
46 3 0.01
48 194 0.96
49 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (46 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTGCCTG
Found at i:87232971 original size:96 final size:97
Alignment explanation
Indices: 87232853--87233073 Score: 383
Period size: 96 Copynumber: 2.3 Consensus size: 97
87232843 GAAGTGTGTC
*
87232853 TGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCTGTGTAAGACCATGTTT
1 TGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCTGTGTAAGACCATGTCT
*
87232918 GGGACATGGCATCAGCGATGATATATGTG-CT
66 GGGACATGGCATCAGCGATGATATATGTGCCA
87232949 TGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCTGTGTAAGACCATGTCT
1 TGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCTGTGTAAGACCATGTCT
* * *
87233014 GGTACATGGCATCGGTGATGATATATGTGCCA
66 GGGACATGGCATCAGCGATGATATATGTGCCA
87233046 T-TGTAAGACCATGTCTGGGACATGGCAT
1 TGTGTAAGACCATGTCTGGGACATGGCAT
87233074 TAGTACTTTA
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
96 117 0.98
97 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (97 bp):
TGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCTGTGTAAGACCATGTCT
GGGACATGGCATCAGCGATGATATATGTGCCA
Found at i:87236417 original size:19 final size:19
Alignment explanation
Indices: 87236393--87236431 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
87236383 ACTAGAGAGA
87236393 AGGTTTCCTTGTAAGCAAT
1 AGGTTTCCTTGTAAGCAAT
*
87236412 AGGTTTCCTTGTAATCAAT
1 AGGTTTCCTTGTAAGCAAT
87236431 A
1 A
87236432 CCTTGTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (19 bp):
AGGTTTCCTTGTAAGCAAT
Found at i:87239027 original size:26 final size:27
Alignment explanation
Indices: 87238991--87239051 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 27
87238981 TGTATATATT
*
87238991 TTGGTTTG-TATATATAGCCATGTGAG
1 TTGGCTTGATATATATAGCCATGTGAG
87239017 TTGGCTTGTATATATATAGCCATGTGAG
1 TTGGCTTG-ATATATATAGCCATGTGAG
87239045 TTGGCTT
1 TTGGCTT
87239052 AGGATGATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 7 0.22
28 25 0.78
ACGTcount: A:0.21, C:0.10, G:0.26, T:0.43
Consensus pattern (27 bp):
TTGGCTTGATATATATAGCCATGTGAG
Found at i:87241724 original size:48 final size:48
Alignment explanation
Indices: 87241672--87241938 Score: 403
Period size: 48 Copynumber: 5.6 Consensus size: 48
87241662 TGATCCTGTA
* *
87241672 TAAGACCATGTCTGGGACATGGCATCGATATTTTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
*
87241720 TAAGACCATGTGTGGGACATGGCATC-AGCATTGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGA-CATTGTTATGTGAGCCAGTG
* * * *
87241768 TAAGACCGTGCCTGGGACATGGCATTGGCATTGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
*
87241816 TAAGACCATGTCTGGGACATGGCATC-AGCATTGTTATGTGAGCCGGTG
1 TAAGACCATGTCTGGGACATGGCATCGA-CATTGTTATGTGAGCCAGTG
* *
87241864 TAAGACCATGTTTGGGACATGGCATCGACATCGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
*
87241912 TAAGACCATGTCTGGGACATCGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
87241939 GCATGAGGCA
Statistics
Matches: 197, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
47 1 0.01
48 195 0.99
49 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
Found at i:87246793 original size:42 final size:42
Alignment explanation
Indices: 87246746--87246862 Score: 117
Period size: 43 Copynumber: 2.8 Consensus size: 42
87246736 AGATTACGTA
****
87246746 TAAGACCATATCTAGGATATGGCATTGATATGAGATTTTGTG
1 TAAGACCATATCTAGGATATGGCATTGATATGAGATCCCATG
* ** * *
87246788 TAAGACCATAGCTACGCTTTTGGCATCGATATGAGATCCCATG
1 TAAGACCATATCTA-GGATATGGCATTGATATGAGATCCCATG
* * *
87246831 TAAGACCATATGTGGGATATGGCATTGGTATG
1 TAAGACCATATCTAGGATATGGCATTGATATG
87246863 GTACTATGTG
Statistics
Matches: 57, Mismatches: 17, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
42 26 0.46
43 31 0.54
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.32
Consensus pattern (42 bp):
TAAGACCATATCTAGGATATGGCATTGATATGAGATCCCATG
Found at i:87249912 original size:68 final size:66
Alignment explanation
Indices: 87249840--87250011 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
87249830 CATCATGTGT
* * * *
87249840 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
87249903 TGTAG
62 TGTAG
** * *
87249908 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
87249973 AG
65 AG
* * * *
87249975 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
87250012 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:87249945 original size:64 final size:64
Alignment explanation
Indices: 87249864--87250047 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
87249854 AGACATTATG
* * *
87249864 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
87249928 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
87249993 AA
63 AA
* * *
87249995 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
87250048 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:87251341 original size:64 final size:64
Alignment explanation
Indices: 87251262--87251387 Score: 234
Period size: 64 Copynumber: 2.0 Consensus size: 64
87251252 CGGGTATGGG
87251262 TAAGGGGTGTTACACGTACCCTATTCTAGAATCGAATATGAGTAACAGCTTTTACATTTAGTGC
1 TAAGGGGTGTTACACGTACCCTATTCTAGAATCGAATATGAGTAACAGCTTTTACATTTAGTGC
* *
87251326 TAAGGGGTGTTACACGTACCCTATTCTAGCATCGAATATGAGTAACGGCTTTTACATTTAGT
1 TAAGGGGTGTTACACGTACCCTATTCTAGAATCGAATATGAGTAACAGCTTTTACATTTAGT
87251388 CGTATCAGAG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (64 bp):
TAAGGGGTGTTACACGTACCCTATTCTAGAATCGAATATGAGTAACAGCTTTTACATTTAGTGC
Found at i:87257184 original size:17 final size:17
Alignment explanation
Indices: 87257162--87257194 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
87257152 TAAATTACAT
87257162 ATTCTAT-TCATAATATA
1 ATTCTATCTC-TAATATA
87257179 ATTCTATCTCTAATAT
1 ATTCTATCTCTAATAT
87257195 TTTTAGTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTCTATCTCTAATATA
Found at i:87267438 original size:27 final size:26
Alignment explanation
Indices: 87267421--87267490 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
87267411 ATATTAAGTC
87267421 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
87267448 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
87267476 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
87267491 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:87267484 original size:28 final size:28
Alignment explanation
Indices: 87267421--87267515 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
87267411 ATATTAAGTC
*
87267421 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
87267448 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
87267476 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
87267505 CGCACACTTAG
1 CGCACACTTAG
87267516 CGCCAATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:87277177 original size:40 final size:45
Alignment explanation
Indices: 87277128--87277210 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 45
87277118 CAAAATTTTG
*
87277128 TTTTAAAAATTTAAAC-TT-TTC-TT-AAAAAACA-TATTTTTAT
1 TTTTAAAAATCTAAACTTTCTTCTTTAAAAAAACACTATTTTTAT
*
87277168 TTTTCAAAATCTAAACTTTCTTCTTTAAAAAAACACTATTTTT
1 TTTTAAAAATCTAAACTTTCTTCTTTAAAAAAACACTATTTTT
87277211 TCTTAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
40 14 0.39
41 2 0.06
42 3 0.08
43 2 0.06
44 8 0.22
45 7 0.19
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (45 bp):
TTTTAAAAATCTAAACTTTCTTCTTTAAAAAAACACTATTTTTAT
Found at i:87277243 original size:138 final size:139
Alignment explanation
Indices: 87277009--87277284 Score: 364
Period size: 137 Copynumber: 2.0 Consensus size: 139
87276999 AAATGATTTA
* *
87277009 AAAAAACAGATTTTTATTTTTCAAAATCCGAACTTTCTCCCTTTTTTTAAAAAAAAAATTATTTT
1 AAAAAACAGATTTTTATTTTTCAAAATCCAAACTTTCT-CCTTTCTTTAAAAAAAAAATTATTTT
** * * *
87277074 CTTAAAAATTAAAGCTTTTATTTTAAAATAGTTGAAAAAAAAATCAAAATTTTGTTTTAAAAATT
65 CTTAAAAATTAAAAATTTTACTTTAAAATAGTTG-AAAAAAAATCAAAACTTTGTTTAAAAAATT
87277139 TAAACTTTTCTT
129 TAAA-TTTTCTT
* * *
87277151 AAAAAACATATTTTTATTTTTCAAAATCTAAAC-TT-T-C-TTCTTTAAAAAAACACTATT-TTT
1 AAAAAACAGATTTTTATTTTTCAAAATCCAAACTTTCTCCTTTCTTTAAAAAAA-A-AATTATTT
* *
87277211 TCTTAAAAATTAAAAATTTTACTTTGAAATAGTTGAAAAAAACTCAAAACTTTGTTTAAAAAATT
64 TCTTAAAAATTAAAAATTTTACTTTAAAATAGTTGAAAAAAAATCAAAACTTTGTTTAAAAAATT
87277276 TAAATTTTC
129 TAAATTTTC
87277285 CTTTCAAATA
Statistics
Matches: 120, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
136 5 0.04
137 43 0.36
138 36 0.30
139 3 0.03
140 1 0.01
141 2 0.02
142 30 0.25
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.42
Consensus pattern (139 bp):
AAAAAACAGATTTTTATTTTTCAAAATCCAAACTTTCTCCTTTCTTTAAAAAAAAAATTATTTTC
TTAAAAATTAAAAATTTTACTTTAAAATAGTTGAAAAAAAATCAAAACTTTGTTTAAAAAATTTA
AATTTTCTT
Found at i:87277710 original size:3 final size:3
Alignment explanation
Indices: 87277702--87277764 Score: 54
Period size: 3 Copynumber: 20.7 Consensus size: 3
87277692 GTAAAAAATG
* * * * *
87277702 ATA ATA ATA ATA ATA ATA TTTA CTA ATA ATA ATA GTA ATA GTA ATG
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
87277748 CTG ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT
87277765 TTGGGCCTTT
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
3 46 0.96
4 2 0.04
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:87278120 original size:34 final size:34
Alignment explanation
Indices: 87278075--87278156 Score: 121
Period size: 34 Copynumber: 2.4 Consensus size: 34
87278065 ATAAGTGATT
87278075 CATTATGAAATGGTTGATCTTGTAAATTG-TATTG
1 CATTATGAAATGGTTGATCTTGTAAA-TGATATTG
*
87278109 CATTATTAAATGGTTGATCTTGTAAATGATATTG
1 CATTATGAAATGGTTGATCTTGTAAATGATATTG
* *
87278143 CACTATGAATTGGT
1 CATTATGAAATGGT
87278157 AAGATACACA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
33 2 0.05
34 41 0.95
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (34 bp):
CATTATGAAATGGTTGATCTTGTAAATGATATTG
Found at i:87278136 original size:16 final size:16
Alignment explanation
Indices: 87278082--87278136 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 16
87278072 ATTCATTATG
87278082 AAATGGTTGATCTTGT
1 AAATGGTTGATCTTGT
*
87278098 AAATTGTATTGCAT-TAT-T
1 AAA-TG-GTTG-ATCT-TGT
87278116 AAATGGTTGATCTTGT
1 AAATGGTTGATCTTGT
87278132 AAATG
1 AAATG
87278137 ATATTGCACT
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
15 3 0.10
16 13 0.42
17 4 0.13
18 8 0.26
19 3 0.10
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.44
Consensus pattern (16 bp):
AAATGGTTGATCTTGT
Found at i:87279527 original size:21 final size:21
Alignment explanation
Indices: 87279499--87279541 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
87279489 TTACATGGCC
87279499 TGTTCACAAGGCCGTGT-CCT
1 TGTTCACAAGGCCGTGTGCCT
* *
87279519 TGTTACACACGGGCGTGTGCCT
1 TGTT-CACAAGGCCGTGTGCCT
87279541 T
1 T
87279542 AGCCACACGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.14, C:0.28, G:0.28, T:0.30
Consensus pattern (21 bp):
TGTTCACAAGGCCGTGTGCCT
Found at i:87287515 original size:43 final size:42
Alignment explanation
Indices: 87287468--87287635 Score: 228
Period size: 42 Copynumber: 4.0 Consensus size: 42
87287458 CATAGTATCG
* * *
87287468 TATCGATGCCAGTAGCCCAGCTATGGTCTTACATGTAATCTCA
1 TATCGATGCCA-TAGCCCAGATATGGTCTTACACGAAATCTCA
* * *
87287511 TATCGATGCCAATAGCCTAGCTATGATCTTACACGAAATCTCA
1 TATCGATGCC-ATAGCCCAGATATGGTCTTACACGAAATCTCA
** *
87287554 TATCGATGCCATATACCAAATATGGTCTTACACGAAATCTCA
1 TATCGATGCCATAGCCCAGATATGGTCTTACACGAAATCTCA
*
87287596 TATCGATGCCATATCCCAGATATGGTCTTACACGAAATCT
1 TATCGATGCCATAGCCCAGATATGGTCTTACACGAAATCT
87287636 TAGTAACCCT
Statistics
Matches: 112, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
42 64 0.57
43 47 0.42
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
TATCGATGCCATAGCCCAGATATGGTCTTACACGAAATCTCA
Found at i:87292445 original size:36 final size:36
Alignment explanation
Indices: 87292373--87292442 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
87292363 ATGATTAAAC
* *
87292373 AATTCAATAATATATATAGTAAAAAATGTAAAAATT
1 AATTCAATAATATAAATAGTAAAAAATATAAAAATT
*
87292409 AATTTAATAATATAAATAGTATATAAAA-ATAAAA
1 AATTCAATAATATAAATAGTA-A-AAAATATAAAA
87292443 TTATTACTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 19 0.66
37 6 0.21
38 4 0.14
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (36 bp):
AATTCAATAATATAAATAGTAAAAAATATAAAAATT
Found at i:87294584 original size:42 final size:43
Alignment explanation
Indices: 87294484--87294599 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
87294474 AGCTCGTACA
* *
87294484 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTACACGAAATCAAATATCG
* ** *
87294527 ATGTCATTGTCCCAGACAGGGTCATACACGAAATCAAATA-CG
1 ATGCCAACGTCCCAGACAGGGTCTTACACGAAATCAAATATCG
*
87294569 ATGCCAACGTCCCAGACATGGTCTTACACGA
1 ATGCCAACGTCCCAGACAGGGTCTTACACGA
87294600 TAACACATGC
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 28 0.46
43 32 0.52
44 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACGAAATCAAATATCG
Found at i:87302164 original size:43 final size:43
Alignment explanation
Indices: 87302100--87302240 Score: 121
Period size: 44 Copynumber: 3.3 Consensus size: 43
87302090 GCACGTACAT
* * *
87302100 CGTGGTCTTACATGT-CATCAAATATCGATTCC-ACTATCCCAAA
1 CGTGGTCTTACACGTAAATCAAATAT-GATGCCAAC-ATCCCAAA
* *
87302143 CAG-GGTCTTACACG-AAATCAAATATGATGCCAACGTCCCAGA
1 C-GTGGTCTTACACGTAAATCAAATATGATGCCAACATCCCAAA
* * * *
87302185 CGTGGTCTTACACGTAAATCATAAGT-CGACGCCAACGTTCCAAA
1 CGTGGTCTTACACGTAAATCA-AA-TATGATGCCAACATCCCAAA
87302229 CGTGGTCTTACA
1 CGTGGTCTTACA
87302241 TGATAACACA
Statistics
Matches: 82, Mismatches: 9, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.01
42 23 0.28
43 28 0.34
44 29 0.35
45 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
CGTGGTCTTACACGTAAATCAAATATGATGCCAACATCCCAAA
Found at i:87302195 original size:42 final size:44
Alignment explanation
Indices: 87302136--87302240 Score: 128
Period size: 44 Copynumber: 2.4 Consensus size: 44
87302126 GATTCCACTA
* *
87302136 TCCCAAACAG-GGTCTTACACG-AAATCA-AA-TATGATGCCAACG
1 TCCCAAAC-GTGGTCTTACACGTAAATCATAAGT-CGACGCCAACG
*
87302178 TCCCAGACGTGGTCTTACACGTAAATCATAAGTCGACGCCAACG
1 TCCCAAACGTGGTCTTACACGTAAATCATAAGTCGACGCCAACG
*
87302222 TTCCAAACGTGGTCTTACA
1 TCCCAAACGTGGTCTTACA
87302241 TGATAACACA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
41 1 0.02
42 18 0.33
43 6 0.11
44 28 0.52
45 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (44 bp):
TCCCAAACGTGGTCTTACACGTAAATCATAAGTCGACGCCAACG
Found at i:87308495 original size:7 final size:7
Alignment explanation
Indices: 87308483--87308508 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
87308473 GTTGAATGTA
87308483 GGCTTTG
1 GGCTTTG
87308490 GGCTTTG
1 GGCTTTG
87308497 GGCTTTG
1 GGCTTTG
87308504 GGCTT
1 GGCTT
87308509 GTGGAGTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.15, G:0.42, T:0.42
Consensus pattern (7 bp):
GGCTTTG
Found at i:87309359 original size:34 final size:34
Alignment explanation
Indices: 87309315--87309384 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
87309305 ATTATGCAAT
87309315 TGTTACTGTAATGGGCTAAGGCCCACACTGATAC
1 TGTTACTGTAATGGGCTAAGGCCCACACTGATAC
*
87309349 TGTTATTGTAATGGGCTAAGGCCCACACTGATAC
1 TGTTACTGTAATGGGCTAAGGCCCACACTGATAC
87309383 TG
1 TG
87309385 GACTTTACTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (34 bp):
TGTTACTGTAATGGGCTAAGGCCCACACTGATAC
Found at i:87319769 original size:29 final size:28
Alignment explanation
Indices: 87319733--87319810 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
87319723 TCATGAGATT
87319733 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
87319763 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
87319790 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
87319811 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:87320028 original size:174 final size:174
Alignment explanation
Indices: 87319763--87320090 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
87319753 AAATTGTACA
*
87319763 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
87319828 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
87319893 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
87319937 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
87320002 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
87320067 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
87320091 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:87331084 original size:46 final size:44
Alignment explanation
Indices: 87330931--87331139 Score: 163
Period size: 46 Copynumber: 4.5 Consensus size: 44
87330921 ATTGTGAGCT
* * * *
87330931 AGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATTATGAGAGAC
1 AGTGTAAGACATGTCTGGGACATGCATCG-CCTCGA-GACGA-AGTC
* * *
87330977 AGTGTAAGACCATGTCTGGGACATGGCACCGGCATTGAGAC-AAGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-GCCTCGAGACGAAGT-C
* *
87331024 TACTGTAAGGCATGTCTGGGACATGCATCAGCCTCGAGACGTAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATC-GCCTCGAGACG-AAGTC
* * * *
87331071 AGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATG-TGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCT-CGAGACGAAGTC
*
87331115 AGTGTAAGACTATGTCTGAGACATG
1 AGTGTAAGAC-ATGTCTGGGACATG
87331140 GTATCTGCAA
Statistics
Matches: 132, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
44 13 0.10
45 15 0.11
46 54 0.41
47 31 0.23
48 17 0.13
49 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTCGAGACGAAGTC
Done.