Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 26 of 284
Found at i:8987939 original size:81 final size:81
Alignment explanation
Indices: 8987554--8987924 Score: 559
Period size: 81 Copynumber: 4.6 Consensus size: 81
8987544 AAAATTACCG
* * ** *
8987554 AAATAACCCTGTAGGGAAGAATTATTGAAATACCCTT-TAGGGTAGAAATACCGAAATACCCCTA
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
8987618 TAGGGTAGAATTACTA
66 TAGGGTAGAATTACTA
* * *
8987634 AAATACCCCTGTAAGCTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
8987699 TAGGGTAGAATTACTA
66 TAGGGTAGAATTACTA
* * * * *
8987715 AAAAACCCCTATAGGGTAGAATTATCGAAATATCCTTGTAGGGT-GAAATACTGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
8987779 TAGGGTAGAATTACTA
66 TAGGGTAGAATTACTA
8987795 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
*
8987860 TAGGGTAGAATTACTG
66 TAGGGTAGAATTACTA
* * * *
8987876 AAATACCCTTGTAGGGTAAAATTACCGAGATACCCTTGTGGGGTA-AAAT
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAAT
8987925 TACCATTTTA
Statistics
Matches: 265, Mismatches: 24, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
80 111 0.42
81 154 0.58
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
TAGGGTAGAATTACTA
Found at i:8988217 original size:27 final size:26
Alignment explanation
Indices: 8988173--8988223 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
8988163 CTCGCTGCAA
*
8988173 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
8988200 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
8988224 AGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:8988352 original size:6 final size:6
Alignment explanation
Indices: 8988343--8988535 Score: 92
Period size: 6 Copynumber: 31.3 Consensus size: 6
8988333 TTGCATTCAC
* * * *
8988343 ATTCTG ATTCTA ATTCTG -TTACCTG ATACCG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* ** *
8988393 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ACACTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * * *
8988442 ATTCT- CTTACCTA ATTCTA ATTTTG ATTTTG ATTTTG ATTCTG -TCACTTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* *
8988492 ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
8988536 AATGTTTCTT
Statistics
Matches: 144, Mismatches: 26, Indels: 34
0.71 0.13 0.17
Matches are distributed among these distances:
5 10 0.07
6 114 0.79
7 14 0.10
8 6 0.04
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:8988401 original size:25 final size:25
Alignment explanation
Indices: 8988343--8988410 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
8988333 TTGCATTCAC
* *
8988343 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTA
* *
8988368 ATACCGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
*
8988393 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
8988411 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:8988436 original size:19 final size:19
Alignment explanation
Indices: 8988369--8988440 Score: 87
Period size: 19 Copynumber: 3.9 Consensus size: 19
8988359 TGTTACCTGA
8988369 TACC-GATTCTGATTCTGT
1 TACCTGATTCTGATTCTGT
*
8988387 TACCTAATTCTGATTCTGGT
1 TACCTGATTCTGATTCT-GT
8988407 T--CTGATTCTGATTCTGT
1 TACCTGATTCTGATTCTGT
**
8988424 TACCTGACACTGATTCT
1 TACCTGATTCTGATTCT
8988441 AATTCTCTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
17 3 0.07
18 17 0.37
19 23 0.50
20 3 0.07
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.44
Consensus pattern (19 bp):
TACCTGATTCTGATTCTGT
Found at i:8988446 original size:62 final size:62
Alignment explanation
Indices: 8988344--8988535 Score: 217
Period size: 62 Copynumber: 3.1 Consensus size: 62
8988334 TGCATTCACA
* *
8988344 TTCTGATTCTAATTCTGTTACCTGATACCGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
* * * * * *
8988406 TTCTGATTCTGATTCTGTTACCTGACACTGATTCTAATTCTCTTACCTAATTCTAATTTTGA
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
* * * * * * * *
8988468 TTTTGATTTTGATTCTGTCACTTGATTCTGATTCTGATTCTGATT--CTCATTTTGATTCTAG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG-TTACCTAATTCTGATTCTGG
8988529 TTCTGAT
1 TTCTGAT
8988536 AATGTTTCTT
Statistics
Matches: 106, Mismatches: 23, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
61 16 0.15
62 88 0.83
63 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
Found at i:8990699 original size:40 final size:40
Alignment explanation
Indices: 8990644--8990820 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
8990634 GGATGATAAT
* * *
8990644 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATC
8990684 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
8990724 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * * *
8990764 CAGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
8990804 C-GGTTAACTCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
8990821 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 16 0.13
40 108 0.87
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:8991273 original size:96 final size:96
Alignment explanation
Indices: 8991109--8991297 Score: 360
Period size: 96 Copynumber: 2.0 Consensus size: 96
8991099 TTCATGGCTT
*
8991109 AAAACTTACTAAGCATTTAATGTTTACTCCGTTTCTTTGAATCTCTGTTTTATAGATTTTGGTTC
1 AAAACTTACTAAGCATTTAATGCTTACTCCGTTTCTTTGAATCTCTGTTTTATAGATTTTGGTTC
8991174 GTCAGCTATCGGACTCGGGATTGTCGAACTC
66 GTCAGCTATCGGACTCGGGATTGTCGAACTC
8991205 AAAACTTACTAAGCATTTAATGCTTACTCCGTTTCTTTGAATCTCTGTTTTATAGATTTTGGTTC
1 AAAACTTACTAAGCATTTAATGCTTACTCCGTTTCTTTGAATCTCTGTTTTATAGATTTTGGTTC
*
8991270 GTCAGCTATCGTACTCGGGATTGTCGAA
66 GTCAGCTATCGGACTCGGGATTGTCGAA
8991298 GTCGAAGTCA
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 91 1.00
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (96 bp):
AAAACTTACTAAGCATTTAATGCTTACTCCGTTTCTTTGAATCTCTGTTTTATAGATTTTGGTTC
GTCAGCTATCGGACTCGGGATTGTCGAACTC
Found at i:8997480 original size:100 final size:100
Alignment explanation
Indices: 8997307--8997504 Score: 396
Period size: 100 Copynumber: 2.0 Consensus size: 100
8997297 TCAAATTAGG
8997307 CAAACTATAGGTAGTGGCCGGCCATGCTACAAATTGTATAATCAAGTGTGAATTTTATATTAACT
1 CAAACTATAGGTAGTGGCCGGCCATGCTACAAATTGTATAATCAAGTGTGAATTTTATATTAACT
8997372 TTAATTAACTAGGTGCCATATTAGTATGGAGGAGC
66 TTAATTAACTAGGTGCCATATTAGTATGGAGGAGC
8997407 CAAACTATAGGTAGTGGCCGGCCATGCTACAAATTGTATAATCAAGTGTGAATTTTATATTAACT
1 CAAACTATAGGTAGTGGCCGGCCATGCTACAAATTGTATAATCAAGTGTGAATTTTATATTAACT
8997472 TTAATTAACTAGGTGCCATATTAGTATGGAGGA
66 TTAATTAACTAGGTGCCATATTAGTATGGAGGA
8997505 TGTAATAAAA
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 98 1.00
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (100 bp):
CAAACTATAGGTAGTGGCCGGCCATGCTACAAATTGTATAATCAAGTGTGAATTTTATATTAACT
TTAATTAACTAGGTGCCATATTAGTATGGAGGAGC
Found at i:9004986 original size:40 final size:40
Alignment explanation
Indices: 9004931--9005093 Score: 222
Period size: 40 Copynumber: 4.1 Consensus size: 40
9004921 GGATGATAAT
* * *
9004931 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATC
9004971 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
9005011 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * * *
9005051 CAGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
9005091 CGG
1 CGG
9005094 TTAAATCCCG
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.03
40 109 0.97
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:9008247 original size:23 final size:22
Alignment explanation
Indices: 9008220--9008308 Score: 85
Period size: 21 Copynumber: 4.1 Consensus size: 22
9008210 ACTTTACTGA
9008220 TCAGGCACTTTC-TGTGTCGTAT
1 TCAGGCAC-TTCATGTGTCGTAT
* * *
9008242 TCCAGGCACCTCGTGTGCCGTA-
1 T-CAGGCACTTCATGTGTCGTAT
*
9008264 TCAAGCACTTCATGTGTCGT-T
1 TCAGGCACTTCATGTGTCGTAT
* *
9008285 TTAGGCACTTTATGTGTCGTAT
1 TCAGGCACTTCATGTGTCGTAT
9008307 TC
1 TC
9008309 TGATCAGATA
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
21 32 0.60
22 6 0.11
23 15 0.28
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (22 bp):
TCAGGCACTTCATGTGTCGTAT
Found at i:9009383 original size:21 final size:21
Alignment explanation
Indices: 9009341--9009384 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
9009331 TGGCAACAAT
* *
9009341 GAGAAAGGCAGCGGTAGCAGC
1 GAGAAAGGCAGAGGCAGCAGC
* *
9009362 GAGAGAGGCAGAGGCAGTAGC
1 GAGAAAGGCAGAGGCAGCAGC
9009383 GA
1 GA
9009385 TGGCAGCAGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.16, G:0.45, T:0.05
Consensus pattern (21 bp):
GAGAAAGGCAGAGGCAGCAGC
Found at i:9022668 original size:37 final size:37
Alignment explanation
Indices: 9022575--9022669 Score: 136
Period size: 37 Copynumber: 2.6 Consensus size: 37
9022565 AACTTTAGCT
* * * *
9022575 CAGACGAAATCTCCACATGAAGTTATCGGGTCTTACC
1 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
9022612 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
9022649 CGGACATAATCTCCACACGTA
1 CAGACAAAATCTCCACACGTA
9022670 ATGTACATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.22
Consensus pattern (37 bp):
CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:9022870 original size:114 final size:114
Alignment explanation
Indices: 9022670--9022880 Score: 422
Period size: 114 Copynumber: 1.9 Consensus size: 114
9022660 TCCACACGTA
9022670 ATGTACATTTAATCACATGTTACAACATTCACATCGACTGTCATATTTGTAATTCATTTGCCTCA
1 ATGTACATTTAATCACATGTTACAACATTCACATCGACTGTCATATTTGTAATTCATTTGCCTCA
9022735 TCCAAAAATCTAATAATACACACCTTTCACCGATATATTTCCAAGTTTC
66 TCCAAAAATCTAATAATACACACCTTTCACCGATATATTTCCAAGTTTC
9022784 ATGTACATTTAATCACATGTTACAACATTCACATCGACTGTCATATTTGTAATTCATTTGCCTCA
1 ATGTACATTTAATCACATGTTACAACATTCACATCGACTGTCATATTTGTAATTCATTTGCCTCA
9022849 TCCAAAAATCTAATAATACACACCTTTCACCG
66 TCCAAAAATCTAATAATACACACCTTTCACCG
9022881 TTTGTCATTT
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 97 1.00
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.35
Consensus pattern (114 bp):
ATGTACATTTAATCACATGTTACAACATTCACATCGACTGTCATATTTGTAATTCATTTGCCTCA
TCCAAAAATCTAATAATACACACCTTTCACCGATATATTTCCAAGTTTC
Found at i:9023039 original size:47 final size:47
Alignment explanation
Indices: 9022977--9023218 Score: 331
Period size: 47 Copynumber: 5.1 Consensus size: 47
9022967 ACACGTTTCG
* * *
9022977 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
9023024 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
9023071 CATTGGCCATCCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* **
9023118 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* * *
9023169 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
9023216 CAT
1 CAT
9023219 AAAATCCTAA
Statistics
Matches: 171, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
47 126 0.74
49 6 0.04
51 39 0.23
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:9023089 original size:94 final size:96
Alignment explanation
Indices: 9022977--9023218 Score: 353
Period size: 98 Copynumber: 2.5 Consensus size: 96
9022967 ACACGTTTCG
* * * **
9022977 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
9023042 AT-CTC-ATATATGCATGTTCACATTCATCA
66 ATACACAATATATACAGGTTCACATTCATCA
*
9023071 CATTGGCCATCCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
9023136 ATCACACATATATATACGGGTTCACATTCATCA
66 AT-ACACA-ATATATACAGGTTCACATTCATCA
*
9023169 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
9023219 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 61 0.46
96 2 0.02
98 69 0.52
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (96 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATACACAATATATACAGGTTCACATTCATCA
Found at i:9025668 original size:85 final size:86
Alignment explanation
Indices: 9025398--9025748 Score: 679
Period size: 85 Copynumber: 4.1 Consensus size: 86
9025388 TATTTTATTG
*
9025398 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCCAACATGTTTATGACATGTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCCAACATGTTTATGACATGTTT
9025463 TTAGCCATAACATCTTGTCCA
66 TTAGCCATAACATCTTGTCCA
9025484 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCCAACATGTTTATGACATGTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCCAACATGTTTATGACATGTTT
9025549 TTAGCCATAACATCTTGTCCA
66 TTAGCCATAACATCTTGTCCA
9025570 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTA-CCCCAACATGTTTATGACATGTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCCAACATGTTTATGACATGTTT
9025634 TTAGCCATAACATCTTGTCCA
66 TTAGCCATAACATCTTGTCCA
9025655 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTA-CCCCAACATGTTTATGACATGTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCCAACATGTTTATGACATGTTT
9025719 TTAGCCATAACATCTTGTCCA
66 TTAGCCATAACATCTTGTCCA
9025740 CCCATGCTC
1 CCCATGCTC
9025749 ATGGCCTGCC
Statistics
Matches: 264, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
85 139 0.53
86 125 0.47
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (86 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCCAACATGTTTATGACATGTTT
TTAGCCATAACATCTTGTCCA
Found at i:9025684 original size:171 final size:171
Alignment explanation
Indices: 9025398--9025748 Score: 677
Period size: 171 Copynumber: 2.1 Consensus size: 171
9025388 TATTTTATTG
*
9025398 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCCAACATGTTTATGACATGTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCCAACATGTTTATGACATGTTT
9025463 TTAGCCATAACATCTTGTCCACCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCC
66 TTAGCCATAACATCTTGTCCACCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTA-CCC
9025528 CAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCA
130 CAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCA
9025570 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTA-CCCCAACATGTTTATGACATGTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCCAACATGTTTATGACATGTTT
9025634 TTAGCCATAACATCTTGTCCACCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCC
66 TTAGCCATAACATCTTGTCCACCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCC
9025699 AACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCA
131 AACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCA
9025740 CCCATGCTC
1 CCCATGCTC
9025749 ATGGCCTGCC
Statistics
Matches: 178, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
170 54 0.30
171 85 0.48
172 39 0.22
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (171 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCCAACATGTTTATGACATGTTT
TTAGCCATAACATCTTGTCCACCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCC
AACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCA
Found at i:9026546 original size:19 final size:19
Alignment explanation
Indices: 9026491--9026548 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 19
9026481 TTAAGAACAC
9026491 ATAATTAAGAACACGTCAA
1 ATAATTAAGAACACGTCAA
9026510 ATATTTATCATAAAGAACACGTCAA
1 ATA---AT--T-AAGAACACGTCAA
9026535 ATAATTAAGAACAC
1 ATAATTAAGAACAC
9026549 AAGATCCGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
19 11 0.33
20 1 0.03
22 4 0.12
24 1 0.03
25 16 0.48
ACGTcount: A:0.52, C:0.16, G:0.09, T:0.24
Consensus pattern (19 bp):
ATAATTAAGAACACGTCAA
Found at i:9029400 original size:40 final size:40
Alignment explanation
Indices: 9029332--9029537 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
9029322 GGGATTTAGT
** * *
9029332 CGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
* * *
9029371 CGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
* * *
9029411 CGGATATAATCGCTAGCACAAATTCCTTCGGGTCTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
* * * *
9029451 CGGATATAG-CAACTCGCACAAATGCCTTCGGATCTCAGTC
1 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCC
* * * *
9029491 CGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGAC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
*
9029531 CAGATAT
1 CGGATAT
9029538 CATTCGAATA
Statistics
Matches: 136, Mismatches: 28, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
39 15 0.11
40 120 0.88
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
Found at i:9033119 original size:66 final size:68
Alignment explanation
Indices: 9032990--9033119 Score: 183
Period size: 66 Copynumber: 1.9 Consensus size: 68
9032980 GGGATGTATC
* *
9032990 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTGGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATGCGGCTAGGTCGCATGAGTGATACCAAGTGA
9033055 AGGACA
63 AGGACA
* *
9033061 CCATGTAGACAAGAGAGCTAC-GAGATAAAT-CGGCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAATGCGGCTAGGTCGCATGAGTGATACCAAGTG
9033120 TTCACCAAGT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
66 25 0.45
67 9 0.16
71 21 0.38
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (68 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGCGGCTAGGTCGCATGAGTGATACCAAGTGAAGG
ACA
Found at i:9039827 original size:39 final size:39
Alignment explanation
Indices: 9039760--9039884 Score: 117
Period size: 39 Copynumber: 3.2 Consensus size: 39
9039750 AGATAGGCTA
* ** *
9039760 AATAATCACCGGTACACAGCCTGTTAGGCACACAGCCCT
1 AATAATCACCAGTACACAGCCTACTAGGCACACAGCCCG
* * * *
9039799 AATAGTCACCAGTACATAGCCTACTAGGCATATAGCCCG
1 AATAATCACCAGTACACAGCCTACTAGGCACACAGCCCG
* * * * * *
9039838 AATAATCA-CAGCATACAGCCTGCTAGGCAAATAGCCCA
1 AATAATCACCAGTACACAGCCTACTAGGCACACAGCCCG
9039876 AATAATCAC
1 AATAATCAC
9039885 TATATTTCTA
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
38 32 0.46
39 38 0.54
ACGTcount: A:0.36, C:0.30, G:0.16, T:0.18
Consensus pattern (39 bp):
AATAATCACCAGTACACAGCCTACTAGGCACACAGCCCG
Found at i:9050117 original size:15 final size:15
Alignment explanation
Indices: 9050061--9050119 Score: 57
Period size: 15 Copynumber: 3.8 Consensus size: 15
9050051 TATAGTTTCT
*
9050061 TATAGTCTCACAATC
1 TATAGTTTCACAATC
9050076 TATAGTTTTCACAATTC
1 TATAG-TTTCACAA-TC
**
9050093 TATACCTTCA-AAGTC
1 TATAGTTTCACAA-TC
9050108 TATAGTTTCACA
1 TATAGTTTCACA
9050120 CTAACAACAC
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
15 17 0.49
16 12 0.34
17 6 0.17
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (15 bp):
TATAGTTTCACAATC
Found at i:9050751 original size:13 final size:13
Alignment explanation
Indices: 9050733--9050762 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
9050723 CTTATTTTAA
9050733 CACATCAAAATAT
1 CACATCAAAATAT
9050746 CACATCAAAATAT
1 CACATCAAAATAT
9050759 CACA
1 CACA
9050763 AGGCATCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (13 bp):
CACATCAAAATAT
Found at i:9054969 original size:26 final size:26
Alignment explanation
Indices: 9054940--9055002 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
9054930 CTAAAGAAGT
* *
9054940 GCCTTTGTGGCAATTTTCGTTAGGAA
1 GCCTTTGTGGCAATTTTCATAAGGAA
* * *
9054966 GCCTTTGTGGTAGTTTTCATAATGAA
1 GCCTTTGTGGCAATTTTCATAAGGAA
9054992 GCCTTTGTGGC
1 GCCTTTGTGGC
9055003 CATCTTTGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.17, C:0.16, G:0.27, T:0.40
Consensus pattern (26 bp):
GCCTTTGTGGCAATTTTCATAAGGAA
Found at i:9055070 original size:28 final size:29
Alignment explanation
Indices: 9054989--9055088 Score: 103
Period size: 29 Copynumber: 3.5 Consensus size: 29
9054979 TTTTCATAAT
* * *
9054989 GAAGCCTTTGTGGCCATCTTTGTTAAAAG
1 GAAGCCTTTGTGGCAATCTCTATTAAAAG
* * * *
9055018 GAAGCCTTTATGGCTATATCTATTAGAAG
1 GAAGCCTTTGTGGCAATCTCTATTAAAAG
*
9055047 GAAGCC-TTGTGGCAATCTGTATTAAAAG
1 GAAGCCTTTGTGGCAATCTCTATTAAAAG
* *
9055075 GATGCATTTGTGGC
1 GAAGCCTTTGTGGC
9055089 GAGACTCTAG
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
28 21 0.37
29 36 0.63
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (29 bp):
GAAGCCTTTGTGGCAATCTCTATTAAAAG
Found at i:9055121 original size:28 final size:28
Alignment explanation
Indices: 9055089--9055142 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
9055079 CATTTGTGGC
9055089 GAGACTCTAGAAGGAAAGCCTCTATGAT
1 GAGACTCTAGAAGGAAAGCCTCTATGAT
* * *
9055117 GAGACTTTGGAAGGAAAGCTTCTATG
1 GAGACTCTAGAAGGAAAGCCTCTATG
9055143 GCTATCTCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (28 bp):
GAGACTCTAGAAGGAAAGCCTCTATGAT
Found at i:9061096 original size:20 final size:21
Alignment explanation
Indices: 9061061--9061104 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
9061051 ACTCGGAGTC
*
9061061 ACTAAAGGACAATTTTTGCAA
1 ACTAAAGGACAATTTTAGCAA
*
9061082 ACTAAA-GACAGTTTTAGCAA
1 ACTAAAGGACAATTTTAGCAA
9061102 ACT
1 ACT
9061105 TTATCAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (21 bp):
ACTAAAGGACAATTTTAGCAA
Found at i:9067689 original size:40 final size:40
Alignment explanation
Indices: 9066786--9067652 Score: 1673
Period size: 40 Copynumber: 21.7 Consensus size: 40
9066776 ATTTGAATGA
9066786 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9066826 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9066866 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9066906 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9066946 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9066986 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067026 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067066 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067106 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067146 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067186 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067226 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067266 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067306 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067346 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067386 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067426 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067466 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067506 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
9067546 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
* * * *
9067586 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTT
*
9067626 TATCCGGGCTAAGACCCGAAGGCATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTT
9067653 GTGCGAGTTG
Statistics
Matches: 822, Mismatches: 4, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
40 819 1.00
41 3 0.00
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
Found at i:9072067 original size:47 final size:46
Alignment explanation
Indices: 9071876--9072187 Score: 231
Period size: 47 Copynumber: 6.6 Consensus size: 46
9071866 TTGTCCATGC
* *
9071876 CATGTCCCAGACATGGTCTTACACTGGCTA-TCCTCATCGAGGGCGATGG
1 CATGTCCCAGACAT-GTCTTACACTGGC-ACTCATC-TCGAGGCCGAT-G
* * * * ** * *
9071925 CATGTCCCAGACATGGTCTTATACTAGCTCTCATATATACGTACTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCGA-G-GCCGATG
** * * *
9071974 CATGTCCTGGACATGTCTTACACTAGCA--CAACTCTTA-GCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCACTCATCTC-GAGGCCGATG
* *
9072018 CATTTCCCAGACACGTCTTACACTGGCTA-TCATCGTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCGAGGCCGATG
* * ** *
9072065 CATGTCCCAGAGATGTCTTACACTGGCACTCATCTCTACACCGCTG
1 CATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAGGCCGATG
* * * *
9072111 CCATGTCCCAGACATGGTCTTCCACTGGCACTCATAAT-GTGGTCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCGAGGCCGATG
9072159 CATGTCCCAGACATGTCTTACACTGGCAC
1 CATGTCCCAGACATGTCTTACACTGGCAC
9072188 ACAAGAAATC
Statistics
Matches: 208, Mismatches: 43, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
44 27 0.13
45 1 0.00
46 30 0.14
47 67 0.32
48 36 0.17
49 44 0.21
50 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAGGCCGATG
Found at i:9090167 original size:18 final size:18
Alignment explanation
Indices: 9090144--9090181 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
9090134 TAAAGGATTA
9090144 AATTGAAGAGTATAATTG
1 AATTGAAGAGTATAATTG
9090162 AATTGAAGAGTATAATTG
1 AATTGAAGAGTATAATTG
9090180 AA
1 AA
9090182 GTAGAGGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (18 bp):
AATTGAAGAGTATAATTG
Found at i:9091280 original size:55 final size:54
Alignment explanation
Indices: 9091152--9091354 Score: 201
Period size: 55 Copynumber: 3.8 Consensus size: 54
9091142 TTAGGGTTTG
* * * * *
9091152 AGGATACCAAGTAAGACCATGGCAAGGCATGGCATTGGTAATTTCTACAAGGCA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAACTTCTATAAGGCA
* * * *
9091206 AGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCATTGGT-AACTTCTATAAGGCA
* * * * * * *
9091261 AAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAACTTCTATAAGGCA
* * * * *
9091314 AGGATGCCACGTAAGATCAAGTCAAGACATGGCAATGGTAA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAA
9091355 GTTTAAAAAG
Statistics
Matches: 120, Mismatches: 28, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 41 0.34
54 36 0.30
55 43 0.36
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (54 bp):
AGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAACTTCTATAAGGCA
Found at i:9091345 original size:53 final size:53
Alignment explanation
Indices: 9091162--9091357 Score: 140
Period size: 53 Copynumber: 3.6 Consensus size: 53
9091152 AGGATACCAA
* * * * * * * *** *
9091162 GTAAGACCATGGCAAGGCATGGCATTGGTAATTTCTACAAGGCAAGGAAATCAT
1 GTAAGACCAAGCCAAGACATGGCAATGGTAAGTTC-ATAAGGCAAAGATCCCAC
* * * * * * *
9091216 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCCCAT
1 GTAAGACCAAGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAAGATCCCAC
* * * * *
9091271 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATGCCAC
1 GTAAGACCAAGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATCCCAC
* *
9091324 GTAAGATCAAGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCAAGCCAAGACATGGCAATGGTAAGTT
9091358 TAAAAAGGAA
Statistics
Matches: 116, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 44 0.38
54 29 0.25
55 43 0.37
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
GTAAGACCAAGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATCCCAC
Found at i:9112821 original size:39 final size:40
Alignment explanation
Indices: 9112720--9112943 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
9112710 TTGAATGATG
* *
9112720 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
9112759 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
9112800 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
9112839 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
9112878 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
9112917 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
9112944 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
39 75 0.45
40 78 0.47
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:9112907 original size:79 final size:80
Alignment explanation
Indices: 9112720--9112943 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
9112710 TTGAATGATG
* * * *
9112720 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
*
9112783 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
9112800 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
*
9112862 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * *
9112878 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
9112943 G
66 G
9112944 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 36 0.28
79 56 0.44
80 35 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:9112974 original size:79 final size:79
Alignment explanation
Indices: 9112773--9112976 Score: 227
Period size: 79 Copynumber: 2.6 Consensus size: 79
9112763 GGACTAAGAT
** * * * *
9112773 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
9112837 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** * *
9112851 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
9112915 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
9112931 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
9112977 TACGTGATTT
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
78 34 0.31
79 50 0.46
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:9120647 original size:26 final size:26
Alignment explanation
Indices: 9120604--9120656 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
9120594 ATATTTTTTT
* * *
9120604 AAAAAAAATTCATTAAAATTTAATAA
1 AAAAAAAATTCATAAAAAATAAATAA
9120630 AAAATAAAATT-ATAAAAAATAAATAA
1 AAAA-AAAATTCATAAAAAATAAATAA
9120656 A
1 A
9120657 TTTAATATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (26 bp):
AAAAAAAATTCATAAAAAATAAATAA
Found at i:9130071 original size:56 final size:56
Alignment explanation
Indices: 9129985--9130154 Score: 331
Period size: 56 Copynumber: 3.0 Consensus size: 56
9129975 AAGTTAGCAC
9129985 AGTAATAAGCAATAGTTAAAAAATTTACAATTTAACAAAATCATGCAATGCGATCA
1 AGTAATAAGCAATAGTTAAAAAATTTACAATTTAACAAAATCATGCAATGCGATCA
9130041 AGTAATAAGCAATAGTTAAAAAATTTACAATTTAACAAAATCATGCAATGCGATCA
1 AGTAATAAGCAATAGTTAAAAAATTTACAATTTAACAAAATCATGCAATGCGATCA
*
9130097 AGTAATAAGCAATAGTTAAAAAATTTACAATTTAACAAAATCATGCAATGTGATCA
1 AGTAATAAGCAATAGTTAAAAAATTTACAATTTAACAAAATCATGCAATGCGATCA
9130153 AG
1 AG
9130155 CAAAACTATT
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 113 1.00
ACGTcount: A:0.50, C:0.12, G:0.11, T:0.27
Consensus pattern (56 bp):
AGTAATAAGCAATAGTTAAAAAATTTACAATTTAACAAAATCATGCAATGCGATCA
Found at i:9134898 original size:48 final size:48
Alignment explanation
Indices: 9134819--9134946 Score: 148
Period size: 48 Copynumber: 2.7 Consensus size: 48
9134809 GGCATCAATA
* * **
9134819 TAAGACCATGTCTGGGACATGGCCTTTGCATCGATCTACGATCCCACG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATAGACGATCCCACG
* ** *
9134867 TAAGACCATGTCTGGGAGATGGCATTGGCATCGATAGGTGATCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATAGACGATCCCACG
* * * *
9134915 TAAGACCATATATGTGATATGGCATTGGCATC
1 TAAGACCATGTCTGGGACATGGCATTGGCATC
9134947 CTACCATGTG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATTGGCATCGATAGACGATCCCACG
Found at i:9136244 original size:23 final size:23
Alignment explanation
Indices: 9136208--9136253 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
9136198 TGTGATGACA
*
9136208 TCATAAACAGAGAGTTACACGGG
1 TCATAAACACAGAGTTACACGGG
*
9136231 TCATAAATACAGAGTTACACGGG
1 TCATAAACACAGAGTTACACGGG
9136254 CTGAAGACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (23 bp):
TCATAAACACAGAGTTACACGGG
Found at i:9147316 original size:21 final size:21
Alignment explanation
Indices: 9147292--9147332 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9147282 TTTCCTCAGA
*
9147292 TATGAATTGAATTAAATTGAG
1 TATGAAATGAATTAAATTGAG
*
9147313 TATGAAATGGATTAAATTGA
1 TATGAAATGAATTAAATTGA
9147333 TGTTAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.37
Consensus pattern (21 bp):
TATGAAATGAATTAAATTGAG
Found at i:9147916 original size:24 final size:24
Alignment explanation
Indices: 9147859--9147908 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
9147849 TCGCTTGAAT
9147859 TTCCCGATATTGGCTATCCGGAGC
1 TTCCCGATATTGGCTATCCGGAGC
9147883 TTCCCGATATTGGCTATCCGGAGC
1 TTCCCGATATTGGCTATCCGGAGC
9147907 TT
1 TT
9147909 TTCGATATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.16, C:0.28, G:0.24, T:0.32
Consensus pattern (24 bp):
TTCCCGATATTGGCTATCCGGAGC
Found at i:9147953 original size:24 final size:24
Alignment explanation
Indices: 9147917--9147962 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
9147907 TTTTCGATAT
9147917 GGTTCTTTATGAACTTCCCAATAA
1 GGTTCTTTATGAACTTCCCAATAA
* *
9147941 GGTTCTTTGTGAATTTCCCAAT
1 GGTTCTTTATGAACTTCCCAAT
9147963 TATGGCTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (24 bp):
GGTTCTTTATGAACTTCCCAATAA
Found at i:9149949 original size:41 final size:39
Alignment explanation
Indices: 9149906--9150042 Score: 143
Period size: 40 Copynumber: 3.4 Consensus size: 39
9149896 TATTATAATC
9149906 TCGCACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAAT
1 TCGCACACTAAGTGCCTTT-ATAGCCGAAGCTATCTCAAT
* * *
9149946 CTCGCAC-CTTAAGTGCCATATATAGCCGAAGC-ATTTCCGAT
1 -TCGCACAC-TAAGTGCC-TTTATAGCCGAAGCTATCT-CAAT
* * *
9149987 TCACACACTAAGTGCTTTATATAGCCGAAGCTATCTCGAT
1 TCGCACACTAAGTGCCTT-TATAGCCGAAGCTATCTCAAT
*
9150027 ACGCACACTAAGTGCC
1 TCGCACACTAAGTGCC
9150043 AAGCATAATT
Statistics
Matches: 80, Mismatches: 10, Indels: 13
0.78 0.10 0.13
Matches are distributed among these distances:
39 1 0.01
40 45 0.56
41 32 0.40
42 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (39 bp):
TCGCACACTAAGTGCCTTTATAGCCGAAGCTATCTCAAT
Found at i:9153975 original size:46 final size:46
Alignment explanation
Indices: 9153922--9154097 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
9153912 ATGTAACCCG
* *
9153922 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCA
* *
9153968 TCCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCA
* * * *
9154018 T--TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCA
* *
9154061 TCCATGAGTGAACTCGGACTCAACTCAACAAGTTCGG
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
9154098 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCA
Found at i:9154043 original size:93 final size:93
Alignment explanation
Indices: 9153931--9154101 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
9153921 GTCCATAAGT
*
9153931 GAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
**
9153996 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CAAGTTCGGATGCCTAGTTACATTTCAC
* * *
9154024 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
9154089 CAAGTTCGGATGC
66 CAAGTTCGGATGC
9154102 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTAGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATTTCAC
Found at i:9159645 original size:14 final size:15
Alignment explanation
Indices: 9159596--9159645 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
9159586 GTATCTTGGG
*
9159596 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
9159611 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
9159626 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
9159640 TTTCTT
1 TTTCTT
9159646 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:9163481 original size:46 final size:45
Alignment explanation
Indices: 9163431--9163602 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 45
9163421 TGGTTGAGCA
9163431 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
9163477 TCCGAACTCATTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
9163524 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
9163570 TCTGAGCTTGTTGAGTTGAGTCCGAGTTCACTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
9163603 TTGGGCGGGT
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 63 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:9163587 original size:93 final size:93
Alignment explanation
Indices: 9163428--9163598 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
9163418 GGATGGTTGA
*
9163428 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
9163493 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * **
9163521 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
9163586 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
9163599 ACTTTTGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:9163847 original size:111 final size:111
Alignment explanation
Indices: 9163667--9163888 Score: 417
Period size: 111 Copynumber: 2.0 Consensus size: 111
9163657 TCCATGTATC
9163667 CGAATTATATTCCGATGTGTTCAACGGGTAAAGTTCTACTCAAATAGAGGAATACTCAAGATGAA
1 CGAATTATATTCCGATGTGTTCAACGGGTAAAGTTCTACTCAAATAGAGGAATACTCAAGATGAA
*
9163732 AGGGACGTATTGGTAAGTGTTGTGAAATGGATACTTTGAACAGGTA
66 AGGGACGTATTGGTAAGTGTTGTGAAATGGATACTTTAAACAGGTA
* *
9163778 CGAATTATATTCCGATGTGTTCAACGGGTAAAGTTCTACTCAAATGGAGGAATACTTAAGATGAA
1 CGAATTATATTCCGATGTGTTCAACGGGTAAAGTTCTACTCAAATAGAGGAATACTCAAGATGAA
9163843 AGGGACGTATTGGTAAGTGTTGTGAAATGGATACTTTAAACAGGTA
66 AGGGACGTATTGGTAAGTGTTGTGAAATGGATACTTTAAACAGGTA
9163889 TGTACTTAAC
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
111 108 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (111 bp):
CGAATTATATTCCGATGTGTTCAACGGGTAAAGTTCTACTCAAATAGAGGAATACTCAAGATGAA
AGGGACGTATTGGTAAGTGTTGTGAAATGGATACTTTAAACAGGTA
Found at i:9168514 original size:45 final size:45
Alignment explanation
Indices: 9168425--9168514 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
9168415 GTGAAATTAG
*
9168425 CTATTATAGATCAAGAAAAACAGAGTCCGGGCCTAGACTAGGGAA
1 CTATTATAGATCAAGAAAAACAGAGTCCGGGCCTAGACCAGGGAA
** *
9168470 CTATTATAGATCAAGAAAAATGGAGTCCGGGCCTAGACCGGGGAA
1 CTATTATAGATCAAGAAAAACAGAGTCCGGGCCTAGACCAGGGAA
9168515 AGAGCAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.18
Consensus pattern (45 bp):
CTATTATAGATCAAGAAAAACAGAGTCCGGGCCTAGACCAGGGAA
Found at i:9168868 original size:58 final size:58
Alignment explanation
Indices: 9168804--9168919 Score: 169
Period size: 58 Copynumber: 2.0 Consensus size: 58
9168794 GTTATCATGT
* ** * * *
9168804 AAGACCATATTTGGGATATGGTGTTGATATGAGATTTCGTGTAAGACCACGTCTGTAA
1 AAGACCATATTTGAGATATGGCATCGATATGAGATCTCATGTAAGACCACGTCTGTAA
*
9168862 AAGACCATATTTGAGATATGGCATCGATGTGAGATCTCATGTAAGACCACGTCTGTAA
1 AAGACCATATTTGAGATATGGCATCGATATGAGATCTCATGTAAGACCACGTCTGTAA
9168920 TAGCCCGATT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (58 bp):
AAGACCATATTTGAGATATGGCATCGATATGAGATCTCATGTAAGACCACGTCTGTAA
Found at i:9170343 original size:46 final size:45
Alignment explanation
Indices: 9170222--9170490 Score: 167
Period size: 46 Copynumber: 5.7 Consensus size: 45
9170212 GACGAGAGCT
* * *
9170222 AGTGTAA-AACATGTCTGGGACAT-GCATCAGCCTTGAGATGTAAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCTTGAGA--TATGTC
* *
9170267 TAGTGTAAGA-CATGTTTGAGACAT-GCATCGGCTATGAGATATGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGATATGTC
* ** *
9170312 AGTGTAAGATCATGTCTGGGACATGGCATCGGCACG-GTTATGTGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATATGT-----C
* ** *
9170361 TAGTGTAAGGCCATGTCTGGGACATGGGGTCAGCCTTGATTTTGATA-GTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATC-GGCTTGA----GATATGTC
* *
9170411 AATGTAAGACCATGTCTGGGACATGGCATCGACTTGATGA-ATGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA-GATAT--GTC
*
9170458 AGTGTAAGACCATGTCTGGGACATGACATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
9170491 ATTATACCTT
Statistics
Matches: 178, Mismatches: 25, Indels: 39
0.74 0.10 0.16
Matches are distributed among these distances:
44 19 0.11
45 20 0.11
46 37 0.21
47 34 0.19
48 6 0.03
49 27 0.15
50 27 0.15
51 3 0.02
55 2 0.01
56 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATATGTC
Found at i:9170429 original size:49 final size:47
Alignment explanation
Indices: 9170364--9170488 Score: 146
Period size: 47 Copynumber: 2.6 Consensus size: 47
9170354 TGAGAGCTAG
* ** *
9170364 TGTAAGGCCATGTCTGGGACATGGGGTCAGCCTTGATTTTG-AT-AGTCAA
1 TGTAAGACCATGTCTGGGACATGGCATC-GACTTGA---TGAATGAGTCAA
*
9170413 TGTAAGACCATGTCTGGGACATGGCATCGACTTGATGAATGAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTTGATGAATGAGTCAA
*
9170460 TGTAAGACCATGTCTGGGACATGACATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
9170489 GCATTATACC
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
45 2 0.03
46 2 0.03
47 33 0.49
48 6 0.09
49 25 0.37
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.27
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTTGATGAATGAGTCAA
Found at i:9173670 original size:41 final size:43
Alignment explanation
Indices: 9173613--9173768 Score: 169
Period size: 41 Copynumber: 3.6 Consensus size: 43
9173603 GTGCTGATGC
9173613 CATGTCTCAGACATGGTCTTACACTGACACATCTCGTAGC-T-
1 CATGTCTCAGACATGGTCTTACACTGACACATCTCGTAGCATG
9173654 CATGTCTCAGACATGGTCTTACACTGACACATCTCGTAGCTGATG
1 CATGTCTCAGACATGGTCTTACACTGACACATCTCGTAGC--ATG
* * *
9173699 CATGTCCCAAACAT-GTCTTACACTGACTTACGTCTCG-AGGTCGATG
1 CATGTCTCAGACATGGTCTTACACTGAC--ACATCTCGTA-G-C-ATG
* *
9173745 CATGTCCCAAACAT-GTCTTACACT
1 CATGTCTCAGACATGGTCTTACACT
9173769 AGCACTCGTC
Statistics
Matches: 104, Mismatches: 3, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
41 40 0.38
44 14 0.13
45 13 0.12
46 36 0.35
47 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (43 bp):
CATGTCTCAGACATGGTCTTACACTGACACATCTCGTAGCATG
Found at i:9173748 original size:46 final size:44
Alignment explanation
Indices: 9173605--9173862 Score: 188
Period size: 46 Copynumber: 5.7 Consensus size: 44
9173595 GGGGTAAGGT
* *
9173605 GCTGATGCCATGTCTCAGACATGGTCTTACACTGACACATCTCGTA
1 GCTGATG-CATGTCCCAAACAT-GTCTTACACTGACACATCTCGTA
* *
9173651 GC---T-CATGTCTCAGACATGGTCTTACACTGACACATCTCGTA
1 GCTGATGCATGTCCCAAACAT-GTCTTACACTGACACATCTCGTA
*
9173692 GCTGATGCATGTCCCAAACATGTCTTACACTGACTTACGTCTCG-A
1 GCTGATGCATGTCCCAAACATGTCTTACACTGAC--ACATCTCGTA
* * * *
9173737 GGTCGATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTC-AA
1 GCT-GATGCATGTCCCAAACATGTCTTACACT-G-ACACATCTCGTA
* * * * * * *
9173783 TGCTGACGCAATGTCCCAGACATGGTTTTACACTGGCTC-TCATAATGTG
1 -GCTGATGC-ATGTCCCAAACAT-GTCTTACACTGACACATC-T--CGTA
*
9173832 GCTGATGCATGTCCCAGACATGTCTTACACT
1 GCTGATGCATGTCCCAAACATGTCTTACACT
9173863 AGCTCACACA
Statistics
Matches: 180, Mismatches: 15, Indels: 34
0.79 0.07 0.15
Matches are distributed among these distances:
41 40 0.22
43 1 0.01
44 14 0.08
45 17 0.09
46 61 0.34
47 29 0.16
48 18 0.10
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (44 bp):
GCTGATGCATGTCCCAAACATGTCTTACACTGACACATCTCGTA
Found at i:9179935 original size:72 final size:72
Alignment explanation
Indices: 9179851--9180038 Score: 227
Period size: 72 Copynumber: 2.6 Consensus size: 72
9179841 TATGTAATGT
** *
9179851 GGGTCCGAGTACTAACTTTGTATATAAACCCGTGAGTAACTCGCTGAGCGAGCA-TATCATGTTA
1 GGGTCCGAGTACTAACTTTGTATATAAACCCGTGAGTAACTCAATGAGCGAGCATTA-CATGATA
9179915 ATGCTTTG
65 ATGCTTTG
* * *
9179923 GGGTCCTG-GTACTAACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGGGCATTACATGATA
1 GGGTCC-GAGTACTAACTTTGTATATAAACCCGTGAGTAACTCAATGAGCGAGCATTACATGATA
9179987 ATGCTTTG
65 ATGCTTTG
* * * * * * *
9179995 GGGTCCGAGTGCTGACTTTGTGTACAGACCTGTGAGTAGCTCAA
1 GGGTCCGAGTACTAACTTTGTATATAAACCCGTGAGTAACTCAA
9180039 ATGCAGGCAT
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
71 1 0.01
72 98 0.96
73 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (72 bp):
GGGTCCGAGTACTAACTTTGTATATAAACCCGTGAGTAACTCAATGAGCGAGCATTACATGATAA
TGCTTTG
Found at i:9186911 original size:72 final size:72
Alignment explanation
Indices: 9186765--9186938 Score: 208
Period size: 72 Copynumber: 2.4 Consensus size: 72
9186755 CTGGGTACTA
* * ** * *
9186765 ACTTTGTATATAAACCCGTGAGTAACTCGCTGAGCGAGCATATCATGTTAATGCTTTGGGGTCAT
1 ACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGAGCATATCATGATAATGCTTTGGGGTCAC
9186830 GGTAATG
66 GGTAATG
*
9186837 ACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGGGCAT-TACATGATAATGCTTTGGGGTC-
1 ACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGAGCATAT-CATGATAATGCTTTGGGGTCA
**
9186900 CGAGTGCTG
65 CG-GTAATG
* * *
9186909 ACTTTGTGTACAGACCTGTGAGTAGCTCAA
1 ACTTTGTGTATAAACCCGTGAGTAGCTCAA
9186939 ATGCAGGCAT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
71 2 0.02
72 86 0.98
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (72 bp):
ACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGAGCATATCATGATAATGCTTTGGGGTCAC
GGTAATG
Found at i:9189918 original size:27 final size:26
Alignment explanation
Indices: 9189884--9189936 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 26
9189874 CAATTCTAAC
9189884 AAAATTTATTTTTAAAATTAAAAATT
1 AAAATTTATTTTTAAAATTAAAAATT
9189910 AAAACTTTATTTTTAAAATTAAAAATT
1 AAAA-TTTATTTTTAAAATTAAAAATT
9189937 GTTTTGACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (26 bp):
AAAATTTATTTTTAAAATTAAAAATT
Found at i:9190084 original size:25 final size:25
Alignment explanation
Indices: 9190047--9190104 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
9190037 TGACCCATAA
* *
9190047 ATTATATCCATAACATTATGAATAT
1 ATTATATTCATAACATTATAAATAT
* * * *
9190072 ATTATATTTATAATATTTTAAATTT
1 ATTATATTCATAACATTATAAATAT
9190097 ATTATATT
1 ATTATATT
9190105 GTATTTAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (25 bp):
ATTATATTCATAACATTATAAATAT
Found at i:9190096 original size:16 final size:16
Alignment explanation
Indices: 9190062--9190104 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
9190052 ATCCATAACA
* *
9190062 TTATGAATATATTATAT
1 TTAT-AATATTTTAAAT
9190079 TTATAATATTTTAAAT
1 TTATAATATTTTAAAT
*
9190095 TTATTATATT
1 TTATAATATT
9190105 GTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (16 bp):
TTATAATATTTTAAAT
Found at i:9198779 original size:19 final size:19
Alignment explanation
Indices: 9198752--9198800 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
9198742 AGTACAACAT
*
9198752 AATAATGAAATTGTAGCAA
1 AATAGTGAAATTGTAGCAA
9198771 AATAGTGAAATTGTAGCAA
1 AATAGTGAAATTGTAGCAA
9198790 AATAGTGAAAT
1 AATAGTGAAAT
9198801 AATAACAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.51, C:0.04, G:0.18, T:0.27
Consensus pattern (19 bp):
AATAGTGAAATTGTAGCAA
Found at i:9199594 original size:46 final size:46
Alignment explanation
Indices: 9199520--9199614 Score: 145
Period size: 46 Copynumber: 2.1 Consensus size: 46
9199510 TTATAAAGGA
* * *
9199520 AATAAAAACCTAATATAATAGAGGAAATAAATAAAACTAAAACTCT
1 AATAAAAACCTAACATAATAAAGAAAATAAATAAAACTAAAACTCT
* *
9199566 AATAAAAATCTAACATAATAAAGAAAATATATAAAACTAAAACTCT
1 AATAAAAACCTAACATAATAAAGAAAATAAATAAAACTAAAACTCT
9199612 AAT
1 AAT
9199615 TGTTGTCGTC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.62, C:0.11, G:0.04, T:0.23
Consensus pattern (46 bp):
AATAAAAACCTAACATAATAAAGAAAATAAATAAAACTAAAACTCT
Found at i:9210125 original size:97 final size:98
Alignment explanation
Indices: 9209992--9210186 Score: 347
Period size: 97 Copynumber: 2.0 Consensus size: 98
9209982 GTTATTCTCA
*
9209992 CACAAATTGATAACAACCTATGAATTCTATAAAATGTCAGAATTTTCCATAATTT-AACACTTTT
1 CACAAATTGATAACAACCTATGAATTCTACAAAATGTCAGAATTTTCCATAATTTCAACACTTTT
9210056 CAATTTAATCCTTAAAACATGTTTTTCACTGAT
66 CAATTTAATCCTTAAAACATGTTTTTCACTGAT
*
9210089 CACAAATTGATAACAACCTATGAATTCTACAAAATGTCAGAATTTTCTATAATTTCAACACTTTT
1 CACAAATTGATAACAACCTATGAATTCTACAAAATGTCAGAATTTTCCATAATTTCAACACTTTT
* *
9210154 CAATTTAATCTTTAAAACATGTTTTTCCCTGAT
66 CAATTTAATCCTTAAAACATGTTTTTCACTGAT
9210187 GTTGAGCTAA
Statistics
Matches: 93, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
97 53 0.57
98 40 0.43
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.38
Consensus pattern (98 bp):
CACAAATTGATAACAACCTATGAATTCTACAAAATGTCAGAATTTTCCATAATTTCAACACTTTT
CAATTTAATCCTTAAAACATGTTTTTCACTGAT
Found at i:9210401 original size:90 final size:90
Alignment explanation
Indices: 9210295--9210474 Score: 342
Period size: 90 Copynumber: 2.0 Consensus size: 90
9210285 TTGCCCATAA
9210295 AATTTTACTTTTATTCAATTTAGTCCATAAGCCTAAAACATACAAATTAGCCATGCTAGCTGAAT
1 AATTTTACTTTTATTCAATTTAGTCCATAAGCCTAAAACATACAAATTAGCCATGCTAGCTGAAT
9210360 ATTCATACATATTTTCCTCCTCCTC
66 ATTCATACATATTTTCCTCCTCCTC
*
9210385 AATTTTACTTTTATTCAATTTAGTCCATGAGCCTAAAACATACAAATTAGCCATGCTAGCTGAAT
1 AATTTTACTTTTATTCAATTTAGTCCATAAGCCTAAAACATACAAATTAGCCATGCTAGCTGAAT
*
9210450 ATTCATACATATTTTCCTTCTCCTC
66 ATTCATACATATTTTCCTCCTCCTC
9210475 CTCTCCATTC
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 88 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (90 bp):
AATTTTACTTTTATTCAATTTAGTCCATAAGCCTAAAACATACAAATTAGCCATGCTAGCTGAAT
ATTCATACATATTTTCCTCCTCCTC
Found at i:9213696 original size:19 final size:19
Alignment explanation
Indices: 9213657--9213696 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
9213647 ACTTTGAAAT
9213657 AGGGCACACGCCCGTGTGGA
1 AGGGCACACGCCCG-GTGGA
9213677 AGGGCAACACGCCC-GTGGA
1 AGGGC-ACACGCCCGGTGGA
9213696 A
1 A
9213697 CATTTCAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 5 0.26
21 8 0.42
ACGTcount: A:0.25, C:0.30, G:0.38, T:0.07
Consensus pattern (19 bp):
AGGGCACACGCCCGGTGGA
Found at i:9214946 original size:46 final size:46
Alignment explanation
Indices: 9214860--9214974 Score: 117
Period size: 46 Copynumber: 2.5 Consensus size: 46
9214850 GCCGATGTAT
* * *
9214860 GTCCCATACATGTCTTACACTAGCTTACATTTCGAGGCCGA-AGCAC
1 GTCCCATACATGTCTTACACTA-CATACATTTCAAGGCCGATAACAC
* * *
9214906 GTCCCATACATGTCTTACACTA-ATACTTGTCTCAATGCCGATAACAT
1 GTCCCATACATGTCTTACACTACATACAT-T-TCAAGGCCGATAACAC
*
9214953 GTCCCAGACATGGTCTTACACT
1 GTCCCATACAT-GTCTTACACT
9214975 GGCTCTAATA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 4 0.07
45 1 0.02
46 30 0.52
47 13 0.22
48 10 0.17
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.29
Consensus pattern (46 bp):
GTCCCATACATGTCTTACACTACATACATTTCAAGGCCGATAACAC
Found at i:9229096 original size:28 final size:28
Alignment explanation
Indices: 9229060--9229126 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
9229050 CCGATGCCTG
*
9229060 GCCCGTGTCCTTCACACGGCCATGACAT
1 GCCCGTGTCCTTCACAAGGCCATGACAT
* *
9229088 GCCTGTGTCCTTCATAAGGCCATGACAT
1 GCCCGTGTCCTTCACAAGGCCATGACAT
9229116 GCCCGTGTCCT
1 GCCCGTGTCCT
9229127 AGCCCGTGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.16, C:0.36, G:0.22, T:0.25
Consensus pattern (28 bp):
GCCCGTGTCCTTCACAAGGCCATGACAT
Found at i:9234982 original size:24 final size:24
Alignment explanation
Indices: 9234955--9235117 Score: 91
Period size: 24 Copynumber: 6.7 Consensus size: 24
9234945 ATCAATCGAT
9234955 TTCGCACACATAGTGCTATTCAAA
1 TTCGCACACATAGTGCTATTCAAA
* * * *
9234979 TTCGCACACTTAGTGCCATGCTAA
1 TTCGCACACATAGTGCTATTCAAA
** * **
9235003 CCCACACACATAGTGCCT-TAGAAA
1 TTCGCACACATAGTG-CTATTCAAA
* * * *
9235027 TCCACACAATCGTATTGAC-ATTCAAA
1 TTCGCAC-A-CATAGTG-CTATTCAAA
9235053 -TCAGCACACATAGTGCTATTC-AA
1 TTC-GCACACATAGTGCTATTCAAA
*
9235076 TTCCGCACACATAGTGCCATTCAAAA
1 TT-CGCACACATAGTGCTATTC-AAA
* *
9235102 TCCGCACACTTAGTGC
1 TTCGCACACATAGTGC
9235118 CAATGTCATT
Statistics
Matches: 104, Mismatches: 25, Indels: 19
0.70 0.17 0.13
Matches are distributed among these distances:
23 3 0.03
24 67 0.64
25 18 0.17
26 16 0.15
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (24 bp):
TTCGCACACATAGTGCTATTCAAA
Found at i:9243028 original size:25 final size:25
Alignment explanation
Indices: 9242994--9243041 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
9242984 CTGTCTCGAA
9242994 GCATAAGCTACAACTTTTCCTTCTT
1 GCATAAGCTACAACTTTTCCTTCTT
9243019 GCATAAGCTACAACTTTTCCTTC
1 GCATAAGCTACAACTTTTCCTTC
9243042 ATCCTAGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.29, G:0.08, T:0.38
Consensus pattern (25 bp):
GCATAAGCTACAACTTTTCCTTCTT
Found at i:9247707 original size:11 final size:11
Alignment explanation
Indices: 9247691--9247724 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
9247681 TATATCATAG
9247691 CATATCATGTA
1 CATATCATGTA
*
9247702 CATATCATG-G
1 CATATCATGTA
9247712 CATATCATGTA
1 CATATCATGTA
9247723 CA
1 CA
9247725 AAAACAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (11 bp):
CATATCATGTA
Found at i:9247708 original size:21 final size:21
Alignment explanation
Indices: 9247682--9247724 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
9247672 ATATGTGAAT
9247682 ATATCATAGCATATCATGTAC
1 ATATCATAGCATATCATGTAC
*
9247703 ATATCATGGCATATCATGTAC
1 ATATCATAGCATATCATGTAC
9247724 A
1 A
9247725 AAAACAGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (21 bp):
ATATCATAGCATATCATGTAC
Found at i:9247789 original size:25 final size:25
Alignment explanation
Indices: 9247761--9247811 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
9247751 ATAACATAAC
* * *
9247761 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAAAGGTCATTTTCA
9247786 CCTAGGGGCAAAAAGGTCATTTTCA
1 CCTAGGGGCAAAAAGGTCATTTTCA
9247811 C
1 C
9247812 ATTATAAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
CCTAGGGGCAAAAAGGTCATTTTCA
Found at i:9255564 original size:21 final size:21
Alignment explanation
Indices: 9255539--9255596 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
9255529 CCCAACCCAT
*
9255539 GCATATCATGTGCATATCATG
1 GCATATCATGTGCAAATCATG
9255560 GCATATCATGTGCAAATCATG
1 GCATATCATGTGCAAATCATG
*
9255581 GCATATCATGTACAAA
1 GCATATCATGTGCAAA
9255597 AGCAGTATCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (21 bp):
GCATATCATGTGCAAATCATG
Found at i:9255565 original size:10 final size:11
Alignment explanation
Indices: 9255538--9255591 Score: 85
Period size: 11 Copynumber: 5.1 Consensus size: 11
9255528 ACCCAACCCA
9255538 TGCATATCATG
1 TGCATATCATG
9255549 TGCATATCATG
1 TGCATATCATG
9255560 -GCATATCATG
1 TGCATATCATG
*
9255570 TGCAAATCATG
1 TGCATATCATG
9255581 -GCATATCATG
1 TGCATATCATG
9255591 T
1 T
9255592 ACAAAAGCAG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
10 19 0.49
11 20 0.51
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (11 bp):
TGCATATCATG
Found at i:9255661 original size:25 final size:25
Alignment explanation
Indices: 9255633--9255681 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
9255623 AAGATAACCC
*
9255633 TAGGGGC-ATAATGGTCATTTTCACT
1 TAGGGGCAAAAAT-GTCATTTTCACT
9255658 TAGGGGCAAAAATGTCATTTTCAC
1 TAGGGGCAAAAATGTCATTTTCAC
9255682 ATTGTAAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (25 bp):
TAGGGGCAAAAATGTCATTTTCACT
Found at i:9263456 original size:37 final size:37
Alignment explanation
Indices: 9263403--9263505 Score: 172
Period size: 37 Copynumber: 2.8 Consensus size: 37
9263393 CGAATAGTCC
*
9263403 CCACACGTAGTTATCGGGTCTTACCCGGACGA-AATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGAC-ATAATCT
*
9263440 CCACACGTAGTCATCGGGTCTTACCCGGTCATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
9263477 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
9263506 ATATATTTCC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 1 0.02
37 61 0.98
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:9263732 original size:48 final size:48
Alignment explanation
Indices: 9263675--9263885 Score: 329
Period size: 48 Copynumber: 4.5 Consensus size: 48
9263665 CTAGCCGAAT
9263675 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
9263723 CATTAGCCATTCCGCTTTACCGCATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
9263771 CATTAGCCATTCCGCTTTACCGCATATACATATCTCATAC--A-TTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
9263816 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
9263864 CACTAGCCATTCGGCTTTACCA
1 CACTAGCCATTCGGCTTTACCA
9263886 TTAGCCATTC
Statistics
Matches: 153, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
45 40 0.26
46 1 0.01
47 1 0.01
48 111 0.73
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:9263853 original size:93 final size:95
Alignment explanation
Indices: 9263675--9263885 Score: 327
Period size: 93 Copynumber: 2.2 Consensus size: 95
9263665 CTAGCCGAAT
*
9263675 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCCGCTT
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACA-ATTTCACACTAGCCATTCCGCTT
* *
9263740 TACCGCATATACATATCTCATACATATTTCA
65 TACCACATATACATATCTCATACATAGTTCA
* * * *
9263771 CATTAGCCATTCCGCTTTACCGCATATACATATCTCATAC-A-TTCACACTAGCCATTCGGCTTT
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACAATTTCACACTAGCCATTCCGCTTT
*
9263834 ACCACGTATACATATCTCATACATAGTTCA
66 ACCACATATACATATCTCATACATAGTTCA
9263864 CACTAGCCATTCGGCTTTACCA
1 CACTAGCCATTCGGCTTTACCA
9263886 TTAGCCATTC
Statistics
Matches: 104, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
93 66 0.63
94 1 0.01
96 37 0.36
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (95 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACAATTTCACACTAGCCATTCCGCTTT
ACCACATATACATATCTCATACATAGTTCA
Found at i:9263892 original size:20 final size:20
Alignment explanation
Indices: 9263867--9263904 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
9263857 TAGTTCACAC
9263867 TAGCCATTCGGCTTTACCAT
1 TAGCCATTCGGCTTTACCAT
9263887 TAGCCATTCGGCTTTACC
1 TAGCCATTCGGCTTTACC
9263905 GCATATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.32, G:0.16, T:0.34
Consensus pattern (20 bp):
TAGCCATTCGGCTTTACCAT
Found at i:9263895 original size:161 final size:162
Alignment explanation
Indices: 9263719--9264115 Score: 609
Period size: 161 Copynumber: 2.5 Consensus size: 162
9263709 TCATACATAT
* *
9263719 TTCACATTAGCCATTCCGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCC
1 TTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCG
* *
9263784 GCTTTACCGCATATACATATCTCATAC-A-TTCACACTAGCCATTCGGCTTTACCACGTATACAT
66 GCTTTACCGCATATACATATCTCATACAATTTCACACTAGCCATTCCGCTTTACCACATATACAT
*
9263847 ATCTCATACATAGTTCACACTAGCCATTCGGC
131 ATCTCATACATAGTTCACACTAGCCATTCCGC
* *
9263879 TTTACCATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACGTTAGCCATTC
1 TTCA-CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTC
* * *
9263944 GGCTTTACCGTATATACATATCTCATACATATTTCACATTAGCCATTCCGCTTTACCGCATATAC
65 GGCTTTACCGCATATACATATCTCATACA-ATTTCACACTAGCCATTCCGCTTTACCACATATAC
* *
9264009 ATATCTCATACATATTTCACATTAGCCATTCCGC
129 ATATCTCATACATAGTTCACACTAGCCATTCCGC
* * * * *
9264043 TTCACACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCG
9264108 GCTTTACC
66 GCTTTACC
9264116 ATTAGCCATT
Statistics
Matches: 214, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
160 3 0.01
161 84 0.39
163 64 0.30
164 63 0.29
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (162 bp):
TTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCG
GCTTTACCGCATATACATATCTCATACAATTTCACACTAGCCATTCCGCTTTACCACATATACAT
ATCTCATACATAGTTCACACTAGCCATTCCGC
Found at i:9263932 original size:68 final size:68
Alignment explanation
Indices: 9263819--9263952 Score: 223
Period size: 68 Copynumber: 2.0 Consensus size: 68
9263809 ACATTCACAC
*
9263819 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTAC
9263884 CAT
66 CAT
* * **
9263887 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACGTTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTAC
9263952 C
66 C
9263953 GTATATACAT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 61 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (68 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTAC
CAT
Found at i:9263959 original size:48 final size:48
Alignment explanation
Indices: 9263884--9264044 Score: 286
Period size: 48 Copynumber: 3.4 Consensus size: 48
9263874 TCGGCTTTAC
*
9263884 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCA
1 CATTAGCCATTCCGCTTTACCGCATATACATATCTCATACATATTTCA
* * *
9263932 CGTTAGCCATTCGGCTTTACCGTATATACATATCTCATACATATTTCA
1 CATTAGCCATTCCGCTTTACCGCATATACATATCTCATACATATTTCA
9263980 CATTAGCCATTCCGCTTTACCGCATATACATATCTCATACATATTTCA
1 CATTAGCCATTCCGCTTTACCGCATATACATATCTCATACATATTTCA
9264028 CATTAGCCATTCCGCTT
1 CATTAGCCATTCCGCTT
9264045 CACACTAGCC
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 108 1.00
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (48 bp):
CATTAGCCATTCCGCTTTACCGCATATACATATCTCATACATATTTCA
Found at i:9264048 original size:19 final size:19
Alignment explanation
Indices: 9264024--9264063 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9264014 TCATACATAT
*
9264024 TTCACATTAGCCATTCCGC
1 TTCACACTAGCCATTCCGC
*
9264043 TTCACACTAGCCATTCGGC
1 TTCACACTAGCCATTCCGC
9264062 TT
1 TT
9264064 TACCACGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (19 bp):
TTCACACTAGCCATTCCGC
Found at i:9264084 original size:67 final size:67
Alignment explanation
Indices: 9263976--9264179 Score: 327
Period size: 67 Copynumber: 3.0 Consensus size: 67
9263966 TCATACATAT
* *
9263976 TTCACATTAGCCATTCCGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCC
1 TTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCG
9264041 GC
66 GC
* * * * *
9264043 TTCACACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCG
9264108 GC
66 GC
*
9264110 TTTACCATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTC
1 TTCA-CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTC
9264175 GGC
65 GGC
9264178 TT
1 TT
9264180 TACCACACAC
Statistics
Matches: 123, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
67 63 0.51
68 60 0.49
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.34
Consensus pattern (67 bp):
TTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCG
GC
Found at i:9264123 original size:20 final size:20
Alignment explanation
Indices: 9264098--9264135 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
9264088 TAGTTCACAC
9264098 TAGCCATTCGGCTTTACCAT
1 TAGCCATTCGGCTTTACCAT
9264118 TAGCCATTCGGCTTTACC
1 TAGCCATTCGGCTTTACC
9264136 GCATATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.32, G:0.16, T:0.34
Consensus pattern (20 bp):
TAGCCATTCGGCTTTACCAT
Found at i:9264154 original size:68 final size:68
Alignment explanation
Indices: 9263980--9264184 Score: 331
Period size: 68 Copynumber: 3.0 Consensus size: 68
9263970 ACATATTTCA
* *
9263980 CATTAGCCATTCCGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCCGCTT
1 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
*
9264045 CA-
66 TAC
* * * * *
9264047 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCGGCTT
1 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
9264112 TAC
66 TAC
9264115 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
1 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
9264180 TAC
66 TAC
9264183 CA
1 CA
9264185 CACACATATA
Statistics
Matches: 124, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
67 59 0.48
68 65 0.52
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (68 bp):
CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
TAC
Found at i:9270320 original size:23 final size:26
Alignment explanation
Indices: 9270289--9270338 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 26
9270279 TCTAACCATC
9270289 TTCTCTGTC-CCAGA-TTCAAA-TCT
1 TTCTCTGTCACCAGATTTCAAACTCT
* *
9270312 TTCTGTGTCATCAGATTTCAAACTCT
1 TTCTCTGTCACCAGATTTCAAACTCT
9270338 T
1 T
9270339 AAATTAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 8 0.36
24 4 0.18
25 6 0.27
26 4 0.18
ACGTcount: A:0.22, C:0.26, G:0.10, T:0.42
Consensus pattern (26 bp):
TTCTCTGTCACCAGATTTCAAACTCT
Found at i:9282722 original size:17 final size:17
Alignment explanation
Indices: 9282700--9282734 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
9282690 GATAAACCAG
9282700 AAACAGAAAAAGAAATT
1 AAACAGAAAAAGAAATT
9282717 AAACAGAAAAAGAAATT
1 AAACAGAAAAAGAAATT
9282734 A
1 A
9282735 TCCCTAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.71, C:0.06, G:0.11, T:0.11
Consensus pattern (17 bp):
AAACAGAAAAAGAAATT
Found at i:9293392 original size:53 final size:52
Alignment explanation
Indices: 9293334--9293541 Score: 209
Period size: 53 Copynumber: 3.9 Consensus size: 52
9293324 ATACCCCCAG
* * * *
9293334 TTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTGCCAAAATGCCGTCGA
1 TTGTAAAATTACCAAA-TACCCTCGATTTGTAAAATTACCAAAATACCGTCGA
* * * **
9293387 TTGTAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGA
1 TTGTAAAATTAC-CAAATACCCTCGATTTGTAAAATTACCAAAATACCGTCGA
* * * *
9293440 TTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAATACCGTTGA
1 -TTGTAAAATTA-CCAAATACCCTCGATTTGTAAAATTACCAAAATACCGTCGA
* * * * *
9293494 TTGTAAAATTACTGAAATACTCTTGATTTATAAAATTACCGAAATACC
1 TTGTAAAATTAC-CAAATACCCTCGATTTGTAAAATTACCAAAATACC
9293542 CTTGTAGGAT
Statistics
Matches: 127, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
52 1 0.01
53 80 0.63
54 45 0.35
55 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.31
Consensus pattern (52 bp):
TTGTAAAATTACCAAATACCCTCGATTTGTAAAATTACCAAAATACCGTCGA
Found at i:9293445 original size:80 final size:80
Alignment explanation
Indices: 9293313--9293539 Score: 257
Period size: 80 Copynumber: 2.8 Consensus size: 80
9293303 TTAGTTTACC
* * * *
9293313 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATT-GCCAA
1 AAATTACTGAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
9293376 A-ATGCCGTCGA-TTGTA
65 ATAT-CC-TCGATTTGTA
*
9293392 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
1 AAATTACTGAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
9293457 ATATCCTCGATTTGTA
65 ATATCCTCGATTTGTA
* * * * * ** *
9293473 AAATTACCGAAATACCGTTGATTGTAAAATTACTGAAA-TACTCTTGATTTATAAAATTACCGAA
1 AAATTACTGAAATACCCTCGATTGTAAAATTAC-CAAAGTACCCCCGATTTATAAAATTACCCAA
9293537 ATA
65 ATA
9293540 CCCTTGTAGG
Statistics
Matches: 128, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
79 16 0.12
80 78 0.61
81 32 0.25
82 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.30
Consensus pattern (80 bp):
AAATTACTGAAATACCCTCGATTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAA
TATCCTCGATTTGTA
Found at i:9293545 original size:27 final size:27
Alignment explanation
Indices: 9293313--9293543 Score: 211
Period size: 27 Copynumber: 8.7 Consensus size: 27
9293303 TTAGTTTACC
* * *
9293313 AAATTACTGAAATACCC-CCAGTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
9293339 AAATTACC-AAAGTACCCTCGGTTTATA
1 AAATTACCGAAA-TACCCTCGATTTGTA
* * * *
9293366 AAATTGCCAAAATGCCGTCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
9293392 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
9293419 AAATTACC-AAAGTACCCCCGATTTATA
1 AAATTACCGAAA-TACCCTCGATTTGTA
* *
9293446 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
9293473 AAATTACCGAAATACCGTTGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
9293499 AAATTACTGAAATACTCTTGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
9293526 AAATTACCGAAATACCCT
1 AAATTACCGAAATACCCT
9293544 TGTAGGATAG
Statistics
Matches: 167, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
25 3 0.02
26 59 0.35
27 99 0.59
28 6 0.04
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:9293557 original size:27 final size:27
Alignment explanation
Indices: 9293527--9293919 Score: 409
Period size: 27 Copynumber: 14.6 Consensus size: 27
9293517 TGATTTATAA
*
9293527 AATTACCGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGATAG
* * *
9293554 AATTACTGAAAAACCCTTGTA-GAGTAG
1 AATTACCGAAATACCCCTGTAGGA-TAG
* *
9293581 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGATAG
*
9293608 AATTACCGAAATACCCCTGTAATG-TAG
1 AATTACCGAAATACCCCTGT-AGGATAG
* *
9293635 AATTACTGAAATACCCCTATAAGG-TAG
1 AATTACCGAAATACCCCTGT-AGGATAG
** *
9293662 AATTACCGAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGATAG
* *
9293689 AATTGCCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGATAG
* * *
9293716 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGATAG
** *
9293743 AATTATTGAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGATAG
* *
9293770 AAATACCGAAATACCCTTGTATGG-TAG
1 AATTACCGAAATACCCCTGTA-GGATAG
* * *
9293797 AAATATCGAAATACCCTTGTAGG-TAG
1 AATTACCGAAATACCCCTGTAGGATAG
**
9293823 AATTACTAAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGATAG
* * *
9293850 AATTAACGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGATAG
* *
9293877 AAATACAGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGATAG
* *
9293904 AATTACTGAGATACCC
1 AATTACCGAAATACCC
9293920 TTATGGGGTA
Statistics
Matches: 310, Mismatches: 50, Indels: 12
0.83 0.13 0.03
Matches are distributed among these distances:
26 28 0.09
27 277 0.89
28 5 0.02
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGATAG
Found at i:9293559 original size:107 final size:108
Alignment explanation
Indices: 9293337--9293542 Score: 256
Period size: 107 Copynumber: 1.9 Consensus size: 108
9293327 CCCCCAGTTG
* * *
9293337 TAAAATTA-CCAAAGTACCCTCGGTTTATAAAATTGCCAAAATGCCGTCGATTGTAAAATTACTA
1 TAAAATTACCCAAAGTACCCTCGATTTATAAAATTACCAAAATACCGTCGATTGTAAAATTACTA
* **
9293401 AAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTA
66 AAATACCCTCGACTTATAAAATTACCAAAGTACCCCCGATGGA
* * * * *
9293444 TAAAATTACCCAAA-TATCCTCGATTTGTAAAATTACCGAAATACCGTTGATTGTAAAATTACTG
1 TAAAATTACCCAAAGTACCCTCGATTTATAAAATTACCAAAATACCGTCGATTGTAAAATTACTA
* * *
9293508 AAATACTCTTGATTTATAAAATTACCGAAA-TACCC
66 AAATACCCTCGACTTATAAAATTACC-AAAGTACCC
9293543 TTGTAGGATA
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 77 0.91
108 8 0.09
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (108 bp):
TAAAATTACCCAAAGTACCCTCGATTTATAAAATTACCAAAATACCGTCGATTGTAAAATTACTA
AAATACCCTCGACTTATAAAATTACCAAAGTACCCCCGATGGA
Found at i:9293613 original size:81 final size:79
Alignment explanation
Indices: 9293527--9293908 Score: 462
Period size: 81 Copynumber: 4.7 Consensus size: 79
9293517 TGATTTATAA
* * *
9293527 AATTACCGAAATACCCTTGTAGGATAGAATTACTGAAAAACCCTTGTAGAGTAGAATTATCGAAA
1 AATTACCGAAATACCCTTGTAGG-TAGAAATACTGAAATACCCCTGTAG-GTAGAATTATCGAAA
*
9293592 TACCCCTGTAGGGTAG
64 TACCCCTGTAGGATAG
* * * * *
9293608 AATTACCGAAATACCCCTGTAATGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAA
1 AATTACCGAAATACCCTTGT-AGGTAGAAATACTGAAATACCCCTGT-AGGTAGAATTATCGAAA
** *
9293673 TACCTTTGTAGGGTAG
64 TACCCCTGTAGGATAG
* * *
9293689 AATTGCCGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTATTGAAA
1 AATTACCGAAATACCCTTGTA-GGTAGAAATACTGAAATACCCCTGTA-GGTAGAATTATCGAAA
*
9293754 TACCCCTATAGGATAG
64 TACCCCTGTAGGATAG
* * *
9293770 AAATACCGAAATACCCTTGTATGGTAGAAATA-TCGAAATACCCTTGTAGGTAGAATTA-CTAAA
1 AATTACCGAAATACCCTTGTA-GGTAGAAATACT-GAAATACCCCTGTAGGTAGAATTATC-GAA
9293833 ATACCCCTGTAGGATAG
63 ATACCCCTGTAGGATAG
* *
9293850 AATTAACGAAATACCCTTGTAGGGTAGAAATACAGAAATACCCCTGTAGGATAGAATTA
1 AATTACCGAAATACCCTTGTA-GGTAGAAATACTGAAATACCCCTGTAGG-TAGAATTA
9293909 CTGAGATACC
Statistics
Matches: 262, Mismatches: 31, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
80 75 0.29
81 183 0.70
82 4 0.02
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.26
Consensus pattern (79 bp):
AATTACCGAAATACCCTTGTAGGTAGAAATACTGAAATACCCCTGTAGGTAGAATTATCGAAATA
CCCCTGTAGGATAG
Found at i:9294532 original size:27 final size:27
Alignment explanation
Indices: 9294502--9294582 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
9294492 ATTCTGTTAA
* * *
9294502 GTGGCTTTCCCACATTATCTGATTCTG
1 GTGGCTATGCCACAATATCTGATTCTG
*
9294529 GTGGCTATGCCACAAATATTTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGATTCTG
*
9294556 GTGGCTCTGCCACAATATCT-ATTCTG
1 GTGGCTATGCCACAATATCTGATTCTG
9294582 G
1 G
9294583 CAACCATGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
26 12 0.26
27 28 0.61
28 6 0.13
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGATTCTG
Found at i:9294704 original size:31 final size:31
Alignment explanation
Indices: 9294663--9294773 Score: 186
Period size: 31 Copynumber: 3.6 Consensus size: 31
9294653 TTGCATTCAC
*
9294663 ATTCTGATTTTGATTCTGTTACTTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
9294694 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
9294725 ATTCTGATTTTGATTCGGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
9294756 ATTCTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
9294774 ATTCTAGTTC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.20, C:0.15, G:0.16, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:9294731 original size:6 final size:6
Alignment explanation
Indices: 9294663--9294787 Score: 87
Period size: 6 Copynumber: 20.3 Consensus size: 6
9294653 TTGCATTCAC
* * * *
9294663 ATTCTG ATTTTG ATTCTG -TTACTTG ATACTG ATTCTA ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
9294712 -TTACCTG ATACTG ATTCTG ATTTTG ATTC-G GTTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
9294762 ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
9294788 AATATTTCTT
Statistics
Matches: 92, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
5 8 0.09
6 72 0.78
7 8 0.09
8 4 0.04
ACGTcount: A:0.20, C:0.15, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:9296815 original size:26 final size:26
Alignment explanation
Indices: 9296730--9297040 Score: 164
Period size: 27 Copynumber: 11.7 Consensus size: 26
9296720 TTTAGTTTAC
*
9296730 AAAATTACTGAAATACCC-C-AGTTGT
1 AAAATTACCGAAATACCCTCGA-TTGT
** * * * *
9296755 AAAATTACATAAGTACCCCCGGTTTAT
1 AAAATTACCGAAATACCCTC-GATTGT
* *
9296782 AAAATTACCGAAATGCCATCGATTGT
1 AAAATTACCGAAATACCCTCGATTGT
**
9296808 AAAATTACTAAAATACCCTCGACTTGT
1 AAAATTACCGAAATACCCTCGA-TTGT
* * *
9296835 AAAATTACC-AAAGTACCCCCGGTTTAT
1 AAAATTACCGAAA-TACCCTC-GATTGT
* *
9296862 AAAATTACCCAAATATCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGA-TTGT
** *
9296889 AAAATTACCGAAATACTGTTGATTGT
1 AAAATTACCGAAATACCCTCGATTGT
** * * *
9296915 AAAATTACTAAAATACTCTTGATTTAT
1 AAAATTACCGAAATACCCTCGA-TTGT
* *
9296942 AAAATTACCGAAATACCCTTG-TAGGAT
1 AAAATTACCGAAATACCCTCGAT-TG-T
* * * * **
9296969 AGAATTACTGAAAAACCCTTGTAGAGT
1 AAAATTACCGAAATACCCTCG-ATTGT
* *
9296996 AAAATTACCGAAATACCC-CTATAGGGT
1 AAAATTACCGAAATACCCTCGAT--TGT
*
9297023 AGAATTACCGAAATACCC
1 AAAATTACCGAAATACCC
9297041 CTGTAATGTA
Statistics
Matches: 219, Mismatches: 52, Indels: 28
0.73 0.17 0.09
Matches are distributed among these distances:
25 17 0.08
26 50 0.23
27 147 0.67
28 5 0.02
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.29
Consensus pattern (26 bp):
AAAATTACCGAAATACCCTCGATTGT
Found at i:9296861 original size:80 final size:80
Alignment explanation
Indices: 9296730--9296956 Score: 266
Period size: 80 Copynumber: 2.9 Consensus size: 80
9296720 TTTAGTTTAC
9296730 AAAATTACTGAAATACCC-C-AGTTGTAAAATTA-CATAAGTACCCCCGGTTTATAAAATTACCG
1 AAAATTACTGAAATACCCTCGA-TTGTAAAATTACCA-AAGTACCCCCGGTTTATAAAATTACCG
9296792 AAAT-GCCATCGA-TTGT
64 AAATAGCC-TCGATTTGT
* *
9296808 AAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCCA
1 AAAATTACTGAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGA
*
9296873 AATATCCTCGATTTGT
65 AATAGCCTCGATTTGT
* ** * * * * ** *
9296889 AAAATTACCGAAATACTGTTGATTGTAAAATTACTAAAATACTCTTGATTTATAAAATTACCGAA
1 AAAATTACTGAAATACCCTCGATTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAA
9296954 ATA
66 ATA
9296957 CCCTTGTAGG
Statistics
Matches: 128, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
78 17 0.13
79 1 0.01
80 85 0.66
81 25 0.20
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (80 bp):
AAAATTACTGAAATACCCTCGATTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAA
ATAGCCTCGATTTGT
Found at i:9296962 original size:27 final size:27
Alignment explanation
Indices: 9296725--9296960 Score: 167
Period size: 27 Copynumber: 8.9 Consensus size: 27
9296715 AATACTTTAG
* *
9296725 TTTACAAAATTACTGAAATACCC-C-A
1 TTTATAAAATTACCGAAATACCCTCGA
* * ** * * *
9296750 GTTGTAAAATTACATAAGTACCCCCGG
1 TTTATAAAATTACCGAAATACCCTCGA
* *
9296777 TTTATAAAATTACCGAAATGCCATCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* **
9296804 -TTGTAAAATTACTAAAATACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * * *
9296830 CTTGTAAAATTACC-AAAGTACCCCCGG
1 TTTATAAAATTACCGAAA-TACCCTCGA
* *
9296857 TTTATAAAATTACCCAAATATCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* ** *
9296884 TTTGTAAAATTACCGAAATACTGTTGA
1 TTTATAAAATTACCGAAATACCCTCGA
* ** * *
9296911 -TTGTAAAATTACTAAAATACTCTTGA
1 TTTATAAAATTACCGAAATACCCTCGA
9296937 TTTATAAAATTACCGAAATACCCT
1 TTTATAAAATTACCGAAATACCCT
9296961 TGTAGGATAG
Statistics
Matches: 163, Mismatches: 42, Indels: 10
0.76 0.20 0.05
Matches are distributed among these distances:
25 17 0.10
26 48 0.29
27 95 0.58
28 3 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TTTATAAAATTACCGAAATACCCTCGA
Found at i:9296974 original size:27 final size:27
Alignment explanation
Indices: 9296944--9297326 Score: 437
Period size: 27 Copynumber: 14.3 Consensus size: 27
9296934 TGATTTATAA
* *
9296944 AATTACCGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
9296971 AATTACTGAAAAACCCTTGTAGAGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
9296998 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
9297025 AATTACCGAAATACCCCTGTAATGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
9297052 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
9297079 AATTGCCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
9297106 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
9297133 AATTATTGAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
9297160 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
9297187 AAATATCGAAATA-CCCTGTA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
9297212 AATTACTAAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
9297239 AATTAACGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
9297266 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
9297293 AATTACTGAGATACCCTTATGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
9297320 AATTACC
1 AATTACC
9297327 CTTTTTGCCC
Statistics
Matches: 295, Mismatches: 59, Indels: 4
0.82 0.16 0.01
Matches are distributed among these distances:
25 14 0.05
26 13 0.04
27 268 0.91
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:9297659 original size:20 final size:20
Alignment explanation
Indices: 9297611--9297659 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
9297601 CGAAGGCTGT
* *
9297611 GTGCCGTTATTTTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
***
9297631 GTATTGATATTGTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
9297651 GTGCCGATA
1 GTGCCGATA
9297660 ATAGACCCGT
Statistics
Matches: 21, Mismatches: 8, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.12, C:0.16, G:0.31, T:0.41
Consensus pattern (20 bp):
GTGCCGATATTGTGGGCTTC
Found at i:9297710 original size:22 final size:22
Alignment explanation
Indices: 9297682--9297733 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
9297672 TCGATTGCTC
9297682 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGGCTT
* * * *
9297704 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGGCTT
*
9297726 CGTGCCAA
1 TGTGCCAA
9297734 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGGCTT
Found at i:9297921 original size:27 final size:27
Alignment explanation
Indices: 9297891--9297971 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
9297881 ATTCTGTTAA
* *
9297891 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTATGCCACAATATCTGATTCTG
*
9297918 GTGGCTATGCCACAAATATTTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGATTCTG
* *
9297945 GTGGCTCTACCACAATATCT-ATTCTG
1 GTGGCTATGCCACAATATCTGATTCTG
9297971 G
1 G
9297972 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
26 12 0.26
27 28 0.61
28 6 0.13
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGATTCTG
Found at i:9298126 original size:31 final size:31
Alignment explanation
Indices: 9298091--9298201 Score: 159
Period size: 31 Copynumber: 3.6 Consensus size: 31
9298081 TTGCATTCAC
* *
9298091 ATTCTGATTTTGATTCTATTACCTGATACTA
1 ATTCTAATTTTGATTCTGTTACCTGATACTA
* *
9298122 ATTCTAATTTTGATTCTGTTACCTGATATTG
1 ATTCTAATTTTGATTCTGTTACCTGATACTA
*
9298153 ATTCTAATTTTGATTCGGTTACCTGATACTA
1 ATTCTAATTTTGATTCTGTTACCTGATACTA
* *
9298184 ATTCTGATTCTGATTCTG
1 ATTCTAATTTTGATTCTG
9298202 ATTCTAGTTC
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTAATTTTGATTCTGTTACCTGATACTA
Found at i:9298195 original size:6 final size:6
Alignment explanation
Indices: 9298091--9298215 Score: 53
Period size: 6 Copynumber: 20.3 Consensus size: 6
9298081 TTGCATTCAC
* * * * *
9298091 ATTCTG ATTTTG ATTCT- ATTACCTG ATACTA ATTCTA ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
9298140 -TTACCTG ATAT-TG ATTCTA ATTTTG ATTC-G GTTACCTG ATACTA ATTCTG
1 ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
9298190 ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
9298216 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 18, Indels: 26
0.67 0.14 0.20
Matches are distributed among these distances:
5 10 0.11
6 65 0.74
7 7 0.08
8 5 0.06
9 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:9303443 original size:17 final size:17
Alignment explanation
Indices: 9303421--9303461 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
9303411 TGTTTCTCTG
9303421 AAATTTATAGCTTTAAA
1 AAATTTATAGCTTTAAA
*
9303438 AAATTTCTAGCTTTAAA
1 AAATTTATAGCTTTAAA
9303455 AAATTTA
1 AAATTTA
9303462 ATCTCTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.41
Consensus pattern (17 bp):
AAATTTATAGCTTTAAA
Found at i:9305712 original size:23 final size:20
Alignment explanation
Indices: 9305686--9305735 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
9305676 GGATTTTTAG
9305686 TATTTGTGCATATTAGATTTATT
1 TATTTGTGC--ATTA-ATTTATT
*
9305709 TATTCGTGCATTAATTTATT
1 TATTTGTGCATTAATTTATT
*
9305729 TAATTGT
1 TATTTGT
9305736 CAAATGTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 12 0.50
21 4 0.17
23 8 0.33
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (20 bp):
TATTTGTGCATTAATTTATT
Found at i:9306941 original size:20 final size:19
Alignment explanation
Indices: 9306916--9306956 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
9306906 GGAAATGGAA
9306916 AAAAGAGAGAGGGTAAGCAT
1 AAAA-AGAGAGGGTAAGCAT
9306936 -AAAAGAGAGGGTAAGCAT
1 AAAAAGAGAGGGTAAGCAT
9306954 AAA
1 AAA
9306957 GCTTCGTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.54, C:0.05, G:0.32, T:0.10
Consensus pattern (19 bp):
AAAAAGAGAGGGTAAGCAT
Found at i:9306944 original size:18 final size:18
Alignment explanation
Indices: 9306921--9306956 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
9306911 TGGAAAAAAG
9306921 AGAGAGGGTAAGCATAAA
1 AGAGAGGGTAAGCATAAA
9306939 AGAGAGGGTAAGCATAAA
1 AGAGAGGGTAAGCATAAA
9306957 GCTTCGTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.33, T:0.11
Consensus pattern (18 bp):
AGAGAGGGTAAGCATAAA
Found at i:9310195 original size:45 final size:44
Alignment explanation
Indices: 9310084--9310209 Score: 114
Period size: 45 Copynumber: 2.9 Consensus size: 44
9310074 ATAGAACAAC
* * * *
9310084 GCCAATGTCCCAGACGTGGTCTTACATGCT-ATCTCAT-ATAGAT
1 GCCAATGTCCCAGAAGTGGTCTTACACG-TAAACACATAATAGAT
* * * *
9310127 GCCACTGTCCCAGACAG-GATCTTACACGTAACCACATAGATCGAT
1 GCCAATGTCCCAGA-AGTGGTCTTACACGTAAACACATA-ATAGAT
* *
9310172 GCCAATGTCCCAGATGTGGTCTTACACGAAAACACATA
1 GCCAATGTCCCAGAAGTGGTCTTACACGTAAACACATA
9310210 TCAGAATCCT
Statistics
Matches: 66, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
42 1 0.02
43 27 0.41
44 2 0.03
45 36 0.55
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (44 bp):
GCCAATGTCCCAGAAGTGGTCTTACACGTAAACACATAATAGAT
Found at i:9316325 original size:59 final size:59
Alignment explanation
Indices: 9316253--9316366 Score: 219
Period size: 59 Copynumber: 1.9 Consensus size: 59
9316243 GACTTCAAGT
*
9316253 GCAAGTCTAATGAAGGAAGTGATTTCTTTTATGTAGTTAGTGATCAAGTGGATCGGCAC
1 GCAAGTCTAATGAAGGAAGTGATGTCTTTTATGTAGTTAGTGATCAAGTGGATCGGCAC
9316312 GCAAGTCTAATGAAGGAAGTGATGTCTTTTATGTAGTTAGTGATCAAGTGGATCG
1 GCAAGTCTAATGAAGGAAGTGATGTCTTTTATGTAGTTAGTGATCAAGTGGATCG
9316367 ACACATCCCC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.29, C:0.11, G:0.28, T:0.32
Consensus pattern (59 bp):
GCAAGTCTAATGAAGGAAGTGATGTCTTTTATGTAGTTAGTGATCAAGTGGATCGGCAC
Found at i:9321598 original size:19 final size:19
Alignment explanation
Indices: 9321574--9321615 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
9321564 TTGTTTCTGT
9321574 GGGAGAGTCTATGTATCAA
1 GGGAGAGTCTATGTATCAA
9321593 GGGAGAGTCTATGTATCAA
1 GGGAGAGTCTATGTATCAA
9321612 GGGA
1 GGGA
9321616 TACTGATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.36, T:0.24
Consensus pattern (19 bp):
GGGAGAGTCTATGTATCAA
Found at i:9336315 original size:33 final size:33
Alignment explanation
Indices: 9336278--9336341 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
9336268 GGTAAGTTCA
*
9336278 TATGTATAATAAGCATTAATTTATATTTGAAAG
1 TATGTATAATAAGCATTAATTTACATTTGAAAG
9336311 TATGTATAATAAGCATTAATTTACATTTGAA
1 TATGTATAATAAGCATTAATTTACATTTGAA
9336342 CCTAGCATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (33 bp):
TATGTATAATAAGCATTAATTTACATTTGAAAG
Found at i:9338309 original size:39 final size:39
Alignment explanation
Indices: 9338255--9338452 Score: 333
Period size: 39 Copynumber: 5.1 Consensus size: 39
9338245 GAAATGTGTA
* *
9338255 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGT
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
9338294 TGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
9338333 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
9338372 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
* * *
9338411 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGATTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
9338450 TGG
1 TGG
9338453 TAATAAAATT
Statistics
Matches: 150, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 150 1.00
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
Found at i:9347871 original size:94 final size:94
Alignment explanation
Indices: 9347684--9347905 Score: 236
Period size: 94 Copynumber: 2.3 Consensus size: 94
9347674 TCGTTTCTGC
* * *
9347684 GCTAGTGTAAGACATATCAGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATATCTGGGACATGCATCGGCCACATGATGAGAGCTAATGTAAGACCATGTC
* * *
9347749 TGGTACACGGCATCGACATTGAGATGAGA
66 TGGGACACGGAATCGACATTAAGATGAGA
* * * *
9347778 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATG-TATC-AATGTAAGACCATGT
1 GCTAGTGTAAGACATATCTGGGACATGCATCGGCCAC-ATGATGAGAGCTAATGTAAGACCATGT
* *
9347840 TTGGGACATGGAATCGGCACGATTAAG-TGAGA
65 CTGGGACACGGAATC-G-AC-ATTAAGATGAGA
* *
9347872 GCTAGGGTAAGACAATTTCTGGGACATGGCATCG
1 GCTAGTGTAAGAC-ATATCTGGGACAT-GCATCG
9347906 ACATTACACC
Statistics
Matches: 108, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
92 25 0.23
93 3 0.03
94 56 0.52
95 18 0.17
96 6 0.06
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATATCTGGGACATGCATCGGCCACATGATGAGAGCTAATGTAAGACCATGTC
TGGGACACGGAATCGACATTAAGATGAGA
Found at i:9359503 original size:23 final size:23
Alignment explanation
Indices: 9359477--9359526 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
9359467 ACCCCATTCA
9359477 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
9359500 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
9359523 ATGC
1 ATGC
9359527 TCAAATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:9359633 original size:27 final size:25
Alignment explanation
Indices: 9359577--9359686 Score: 76
Period size: 27 Copynumber: 4.1 Consensus size: 25
9359567 TTACCTTACC
* * *
9359577 GGGTATTACAGTCATTTTACCCTATGA
1 GGGTATT-C-GTCATTTTATCATATAA
9359604 GGGTATTCCGGTCATTTTATCATATAA
1 GGGTATT-C-GTCATTTTATCATATAA
* * *
9359631 GGGGAAATCGTCATTTTATCACATAA
1 -GGGTATTCGTCATTTTATCATATAA
* * *
9359657 GGGCAAAATCGTTATTTTATCATATAA
1 GGG--TATTCGTCATTTTATCATATAA
9359684 GGG
1 GGG
9359687 CAAAATTATC
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.04
26 16 0.23
27 46 0.66
28 5 0.07
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (25 bp):
GGGTATTCGTCATTTTATCATATAA
Found at i:9359918 original size:27 final size:27
Alignment explanation
Indices: 9359614--9359911 Score: 411
Period size: 27 Copynumber: 11.1 Consensus size: 27
9359604 GGGTATTCCG
* *
9359614 GTCATTTTATCATATAAGGG-GAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
9359640 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
9359667 GTTATTTTATCATATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
* *
9359694 ATCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
9359721 ATCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
9359748 GTCATTTTATCACATATA-GGCAAAATC
1 GTCATTTTATCACATA-AGGGCAAAATC
** *
9359775 GTCATTTTATCACACGAGGACAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
9359802 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
9359829 ATCATTTTATCACATAGGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
9359856 ATCGTTTTATCACAAAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
9359883 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
9359910 GT
1 GT
9359912 TAATTTACCA
Statistics
Matches: 239, Mismatches: 30, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
26 20 0.08
27 218 0.91
28 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Done.