Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 260 of 284
Found at i:87593467 original size:54 final size:54
Alignment explanation
Indices: 87593337--87593816 Score: 852
Period size: 54 Copynumber: 8.8 Consensus size: 54
87593327 ATATTAAGTC
* * * *
87593337 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AACT
87593392 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
87593446 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTC-AACT
87593502 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTC-AACT
87593558 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
*
87593612 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAACT
87593667 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
87593721 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
*
87593775 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
87593817 GCACAATTTA
Statistics
Matches: 415, Mismatches: 7, Indels: 7
0.97 0.02 0.02
Matches are distributed among these distances:
54 179 0.43
55 153 0.37
56 83 0.20
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
Found at i:87593474 original size:82 final size:82
Alignment explanation
Indices: 87593337--87593816 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
87593327 ATATTAAGTC
* * * *
87593337 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
87593402 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
87593419 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
87593484 GTGCTACATAGTCAAACT
66 GTGCTACATAGTC-AACT
87593502 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
87593567 AGTGCTACATAGTCAACT
65 AGTGCTACATAGTCAACT
*
87593585 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
87593650 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
87593667 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
87593731 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
*
87593748 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AATTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
87593812 GTGCT
66 GTGCT
87593817 GCACAATTTA
Statistics
Matches: 389, Mismatches: 7, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
81 99 0.25
82 181 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:87599114 original size:23 final size:23
Alignment explanation
Indices: 87599088--87599134 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
87599078 TTTGGAATAT
87599088 AAATGAGGAGGTCTTAAATAGCA
1 AAATGAGGAGGTCTTAAATAGCA
87599111 AAATGAGGAGGTCTTAAATAGCA
1 AAATGAGGAGGTCTTAAATAGCA
87599134 A
1 A
87599135 TTTGACCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.09, G:0.26, T:0.21
Consensus pattern (23 bp):
AAATGAGGAGGTCTTAAATAGCA
Found at i:87600061 original size:89 final size:89
Alignment explanation
Indices: 87599910--87600086 Score: 336
Period size: 89 Copynumber: 2.0 Consensus size: 89
87599900 CGAGGAAAAT
*
87599910 AAAAGATTATGGACTAAATTGCAAAATCTTTATATTTTGGTACCAGGGTAAGTTCATGTGTAAAT
1 AAAAGATTATGGACTAAATTGCAAAATCTTTATATTTTGGTACCAAGGTAAGTTCATGTGTAAAT
87599975 AATGTAGCATAATTGTTATTTTTG
66 AATGTAGCATAATTGTTATTTTTG
*
87599999 AAAAGATTGTGGACTAAATTGCAAAATCTTTATATTTTGGTACCAAGGTAAGTTCATGTGTAAAT
1 AAAAGATTATGGACTAAATTGCAAAATCTTTATATTTTGGTACCAAGGTAAGTTCATGTGTAAAT
87600064 AATGTAGCATAATTGTTATTTTT
66 AATGTAGCATAATTGTTATTTTT
87600087 CGTGAAGTGA
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 86 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.40
Consensus pattern (89 bp):
AAAAGATTATGGACTAAATTGCAAAATCTTTATATTTTGGTACCAAGGTAAGTTCATGTGTAAAT
AATGTAGCATAATTGTTATTTTTG
Found at i:87601918 original size:39 final size:39
Alignment explanation
Indices: 87601807--87601936 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
87601797 GGACTAAGAT
* * *
87601807 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
**
87601847 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
87601887 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
87601926 CCGAAGGCATT
1 CCGAAGGCATT
87601937 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.47
40 42 0.53
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:87601956 original size:79 final size:79
Alignment explanation
Indices: 87601807--87601971 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
87601797 GGACTAAGAT
* * * ** ** *
87601807 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
**
87601872 AATCCGGGTTATGTC
66 AATCC-GGTTAAATC
* * * *
87601887 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
87601951 TATCCGGTTAAATC
66 AATCCGGTTAAATC
87601965 CCGAAGG
1 CCGAAGG
87601972 TACGTGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
78 14 0.20
79 49 0.70
80 7 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGTTAAATC
Found at i:87605033 original size:62 final size:62
Alignment explanation
Indices: 87604931--87605061 Score: 253
Period size: 62 Copynumber: 2.1 Consensus size: 62
87604921 AGGGACACGT
*
87604931 CCGTGTGCTATTACTTCAGGCCGTGCTTGAGCCTGGCAAATTGACACGGCCATGTGGTCCGC
1 CCGTGTGCTATTACTTCAGGCCGTGCTTGAGCCTGCCAAATTGACACGGCCATGTGGTCCGC
87604993 CCGTGTGCTATTACTTCAGGCCGTGCTTGAGCCTGCCAAATTGACACGGCCATGTGGTCCGC
1 CCGTGTGCTATTACTTCAGGCCGTGCTTGAGCCTGCCAAATTGACACGGCCATGTGGTCCGC
87605055 CCGTGTG
1 CCGTGTG
87605062 AGGAGGTCCA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 68 1.00
ACGTcount: A:0.15, C:0.30, G:0.29, T:0.26
Consensus pattern (62 bp):
CCGTGTGCTATTACTTCAGGCCGTGCTTGAGCCTGCCAAATTGACACGGCCATGTGGTCCGC
Found at i:87614554 original size:26 final size:26
Alignment explanation
Indices: 87614494--87614555 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
87614484 TCACTTTTCA
*
87614494 ATTCTCATATTTGCACATTGTCACAT
1 ATTCACATATTTGCACATTGTCACAT
**
87614520 ATTTGCATATTTGCACATTGTCACAT
1 ATTCACATATTTGCACATTGTCACAT
87614546 -TTACACATAT
1 ATT-CACATAT
87614556 ATTCTTTTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 2 0.06
26 29 0.94
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (26 bp):
ATTCACATATTTGCACATTGTCACAT
Found at i:87615319 original size:15 final size:15
Alignment explanation
Indices: 87615299--87615333 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
87615289 TGCCTTTCTC
87615299 CTCTTTTCTTTCTTT
1 CTCTTTTCTTTCTTT
87615314 CTCTTTTCTTTCTTT
1 CTCTTTTCTTTCTTT
87615329 -TCTTT
1 CTCTTT
87615334 CCTATTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
CTCTTTTCTTTCTTT
Found at i:87626035 original size:55 final size:54
Alignment explanation
Indices: 87625940--87626089 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
87625930 CTACTTTGTT
* ** * *
87625940 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
87625994 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
87626049 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
87626090 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:87626052 original size:27 final size:27
Alignment explanation
Indices: 87625912--87626089 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
87625902 TAAATTGTAC
87625912 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
87625939 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
87625965 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
87625993 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
87626021 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
87626048 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
87626075 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87626090 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:87626053 original size:82 final size:81
Alignment explanation
Indices: 87625913--87626068 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
87625903 AAATTGTACA
* * * *
87625913 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
87625978 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
87625994 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
87626057 TGTGCGAGTTGA
63 TGTGCGAATTGA
87626069 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:87634128 original size:27 final size:27
Alignment explanation
Indices: 87634097--87634274 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87634087 TAAATTGTAC
87634097 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
87634124 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87634150 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
87634178 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
87634206 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87634233 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
87634260 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87634275 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:87634211 original size:82 final size:81
Alignment explanation
Indices: 87634098--87634253 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87634088 AAATTGTACA
* *
87634098 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
87634162 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
87634179 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
87634244 TGCGAGTTGA
65 TGCGAATTGA
87634254 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:87634265 original size:82 final size:81
Alignment explanation
Indices: 87634094--87634274 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
87634084 GATTAAATTG
* *
87634094 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
87634159 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
87634175 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
87634239 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
87634257 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
87634275 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:87634285 original size:27 final size:27
Alignment explanation
Indices: 87634179--87634285 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
87634169 TGACCATGCG
* * * *
87634179 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
87634207 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
87634234 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
87634261 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
87634286 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:87638280 original size:22 final size:22
Alignment explanation
Indices: 87638252--87638296 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
87638242 AAGCCCACAC
*
87638252 GGGCGTGTAGAATTCTTGGCCA
1 GGGCGTGTAGAATTCTGGGCCA
* *
87638274 GGGCGTGTGGAGTTCTGGGCCA
1 GGGCGTGTAGAATTCTGGGCCA
87638296 G
1 G
87638297 ACCATGTGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.13, C:0.18, G:0.44, T:0.24
Consensus pattern (22 bp):
GGGCGTGTAGAATTCTGGGCCA
Found at i:87640029 original size:19 final size:20
Alignment explanation
Indices: 87640005--87640046 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
87639995 CAAACACCAA
87640005 AAAAGTAAATCA-TTTCCAG
1 AAAAGTAAATCATTTTCCAG
*
87640024 AAAAGTAAATTATTTTCCAG
1 AAAAGTAAATCATTTTCCAG
87640044 AAA
1 AAA
87640047 TTATTTTTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.29
Consensus pattern (20 bp):
AAAAGTAAATCATTTTCCAG
Found at i:87644658 original size:47 final size:46
Alignment explanation
Indices: 87644446--87644761 Score: 241
Period size: 47 Copynumber: 6.7 Consensus size: 46
87644436 ATAAGTTGCT
87644446 GATGTCATGTCCCAGACATAGTCTTACACTAGCTATCATCATCGAGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-ATCATCATCGAGGCC
* * * * *
87644495 GATGCCATGTCCTAGACATGGTCTTATACTAGCTCTCGTAT-ATACG-TGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-ATC--ATCAT-CGAGGCC
* *
87644545 GATGCATGTCCCAGACATGTCTTACACTAGCA-CAAC-TCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCATCATCATC-GAGGCC
* * * *
87644589 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-ATCATCATCGAGGCC
* * * * * *
87644636 GATGCATGTCCCAAACATGTCTTACACTGGCACTCGTC-TCTATGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCA-TCATCATCGAGGCC
* * * * * *
87644682 GATGCCATGTCCCATACATGGTCTTATACTGGCACTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCA-TCATCATCGAGGCC
87644730 GATGCATGTCCCAGACATGTCTTACACTAGCA
1 GATGCATGTCCCAGACATGTCTTACACTAGCA
87644762 CACAAGAAAT
Statistics
Matches: 218, Mismatches: 35, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.00
44 32 0.15
45 1 0.00
46 27 0.12
47 63 0.29
48 36 0.17
49 46 0.21
50 8 0.04
51 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCATCATCATCGAGGCC
Found at i:87644734 original size:141 final size:140
Alignment explanation
Indices: 87644443--87644760 Score: 365
Period size: 141 Copynumber: 2.2 Consensus size: 140
87644433 GGTATAAGTT
*
87644443 GCTGATGTCATGTCCCAGACATAGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCT
1 GCTGATG-CATGTCCCAGACA-AGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCC
* * *
87644508 AGACATGGTCTTATACTAGCTCTCGTATATACGTGCTGATGCATGTCCCAGACATGTCTTACACT
64 AAACATGGTCTTACACTAGCACTCGTATATAC-TGCTGATGCATGTCCCAGACATGTCTTACACT
* *
87644573 AGCACAACTCTTA
128 AGCACAAATCGTA
* * * * *
87644586 GCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGATG-CATGTCCCAA
1 GCTGATGCATGTCCCAGACAAGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCCAA
* * * * * *
87644650 ACAT-GTCTTACACTGGCACTCGTCTCTA-TGCTGATGCCATGTCCCATACATGGTCTTATACTG
66 ACATGGTCTTACACTAGCACTCGTATATACTGCTGATG-CATGTCCCAGACAT-GTCTTACACTA
*
87644713 GCACTCATAAT-GTG
129 GCA--CA-AATCGTA
*
87644727 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCTGATGCATGTCCCAGACAAGTCTTACACTAGC
87644761 ACACAAGAAA
Statistics
Matches: 148, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
137 8 0.05
138 13 0.09
139 31 0.21
140 12 0.08
141 64 0.43
142 14 0.09
143 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (140 bp):
GCTGATGCATGTCCCAGACAAGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCCAA
ACATGGTCTTACACTAGCACTCGTATATACTGCTGATGCATGTCCCAGACATGTCTTACACTAGC
ACAAATCGTA
Found at i:87644739 original size:94 final size:92
Alignment explanation
Indices: 87644443--87644762 Score: 319
Period size: 94 Copynumber: 3.4 Consensus size: 92
87644433 GGTATAAGTT
*
87644443 GCTGATGTCATGTCCCAGACATAGTCTTACACTAGCTA-TCATCATCGAGGCCGATGCCATGTCC
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACTC-TC-TCTA-GCCGATGCCATGTCC
* * * *
87644507 TAGACATGGTCTTATACTAGCTCTCGTATATACGT-
60 CAGACATGGTCTTATACTGGCACTC--ATA-ATGTG
* *
87644542 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-TAGCCGATG-CGTGTCCCAGAC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCAC-TCTCTCTAGCCGATGCCATGTCCCAGAC
* * ** *
87644605 A-CGTCTTACACTGGCTA-TCATCGTCGAG
65 ATGGTCTTATACTGGC-ACTCATAAT-GTG
* * * * *
87644633 GCCGATGCATGTCCCAAACATGTCTTACACTGGCACTCGTCTCTATGCTGATGCCATGTCCCATA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTC-TCTCTA-GCCGATGCCATGTCCCAGA
87644698 CATGGTCTTATACTGGCACTCATAATGTG
64 CATGGTCTTATACTGGCACTCATAATGTG
87644727 GCTGATGCATGTCCCAGACATGTCTTACACTAGCAC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCAC
87644763 ACAAGAAATC
Statistics
Matches: 183, Mismatches: 27, Indels: 27
0.77 0.11 0.11
Matches are distributed among these distances:
90 4 0.02
91 36 0.20
92 15 0.08
93 17 0.09
94 54 0.30
95 18 0.10
96 2 0.01
97 15 0.08
98 15 0.08
99 7 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCTCTCTAGCCGATGCCATGTCCCAGACA
TGGTCTTATACTGGCACTCATAATGTG
Found at i:87650176 original size:26 final size:27
Alignment explanation
Indices: 87650135--87650195 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
87650125 TTCTTTCTGA
87650135 ACTC-TTCATGGAAAAATTCCCAAGTT
1 ACTCTTTCATGGAAAAATTCCCAAGTT
87650161 ACTCTTTCATGGAAAAATTCCCAAGTT
1 ACTCTTTCATGGAAAAATTCCCAAGTT
87650188 ACTCTTTC
1 ACTCTTTC
87650196 TCTCGGTACT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 4 0.12
27 30 0.88
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.34
Consensus pattern (27 bp):
ACTCTTTCATGGAAAAATTCCCAAGTT
Found at i:87652190 original size:47 final size:45
Alignment explanation
Indices: 87652098--87652261 Score: 120
Period size: 47 Copynumber: 3.5 Consensus size: 45
87652088 AATGTGTGCC
* *
87652098 CCAGACACGTCTTACACTGGCTA-TCAT--TGTCGAGACCGATGCATGT
1 CCAGACATGTCTTACACTGGC-ACTCATAATGT-G-G-CCAATGCATGT
* * *
87652144 CCGAGACATGTCTTACACTGGCACTCGT-CTCTGTGCCAATGCCATGTT
1 CC-AGACATGTCTTACACTGGCACTCATAATGTG-GCCAATG-CATG-T
* * **
87652192 CCACACATGGTCTTATACTGGCACTCATAATGTGGCTGATGCATGT
1 CCAGACAT-GTCTTACACTGGCACTCATAATGTGGCCAATGCATGT
*
87652238 CCCAGACATGTCTTACATTGGCAC
1 -CCAGACATGTCTTACACTGGCAC
87652262 ACAAGAAATC
Statistics
Matches: 95, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
46 22 0.23
47 43 0.45
48 27 0.28
49 3 0.03
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
CCAGACATGTCTTACACTGGCACTCATAATGTGGCCAATGCATGT
Found at i:87654298 original size:14 final size:14
Alignment explanation
Indices: 87654281--87654307 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
87654271 TCATATTCAT
87654281 TTCTAATAATGTTA
1 TTCTAATAATGTTA
87654295 TTCTAATAATGTT
1 TTCTAATAATGTT
87654308 GAGTCTAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TTCTAATAATGTTA
Found at i:87659383 original size:72 final size:72
Alignment explanation
Indices: 87659266--87659413 Score: 287
Period size: 72 Copynumber: 2.1 Consensus size: 72
87659256 TTTTCACTGA
*
87659266 CAATGTCCTAGGATAATGTATAGATAATCATGCATTGGAAATTTAAACTAAAATGACAATAAAGA
1 CAATGTCCTAGGATAATGTATAGATAATCATACATTGGAAATTTAAACTAAAATGACAATAAAGA
87659331 ATACAAG
66 ATACAAG
87659338 CAATGTCCTAGGATAATGTATAGATAATCATACATTGGAAATTTAAACTAAAATGACAATAAAGA
1 CAATGTCCTAGGATAATGTATAGATAATCATACATTGGAAATTTAAACTAAAATGACAATAAAGA
87659403 ATACAAG
66 ATACAAG
87659410 CAAT
1 CAAT
87659414 CTGAGCAGAA
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 75 1.00
ACGTcount: A:0.48, C:0.11, G:0.14, T:0.26
Consensus pattern (72 bp):
CAATGTCCTAGGATAATGTATAGATAATCATACATTGGAAATTTAAACTAAAATGACAATAAAGA
ATACAAG
Found at i:87660422 original size:8 final size:8
Alignment explanation
Indices: 87660409--87660434 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
87660399 CATATATAAA
87660409 ATATTATT
1 ATATTATT
87660417 ATATTATT
1 ATATTATT
87660425 ATATTATT
1 ATATTATT
87660433 AT
1 AT
87660435 TATACATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
ATATTATT
Found at i:87662169 original size:17 final size:18
Alignment explanation
Indices: 87662136--87662169 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
87662126 TCAAATTTGG
87662136 GTTGATATTGGTATGAAA
1 GTTGATATTGGTATGAAA
*
87662154 GTTGAT-TTGGTTTGAA
1 GTTGATATTGGTATGAA
87662170 TGAAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.44
Consensus pattern (18 bp):
GTTGATATTGGTATGAAA
Found at i:87662271 original size:21 final size:21
Alignment explanation
Indices: 87662247--87662286 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
87662237 TAGGTTGTTT
87662247 ATTTGACAT-TGTTTTGAATGA
1 ATTTGA-ATGTGTTTTGAATGA
87662268 ATTTGAATGTGTTTTGAAT
1 ATTTGAATGTGTTTTGAAT
87662287 TGGTTGAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.28, C:0.03, G:0.20, T:0.50
Consensus pattern (21 bp):
ATTTGAATGTGTTTTGAATGA
Found at i:87662633 original size:20 final size:20
Alignment explanation
Indices: 87662608--87662659 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
87662598 CGGCCTGAAG
*
87662608 CACGGGCGTGT-TTAGGGTCA
1 CACGGGCGTGTCTT-GGGCCA
*
87662628 CACGGGCATGTCCTTGGGCCA
1 CACGGGCGTGT-CTTGGGCCA
87662649 CACGGGCGTGT
1 CACGGGCGTGT
87662660 GATCCCTGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 10 0.37
21 15 0.56
22 2 0.07
ACGTcount: A:0.13, C:0.27, G:0.38, T:0.21
Consensus pattern (20 bp):
CACGGGCGTGTCTTGGGCCA
Found at i:87672835 original size:47 final size:47
Alignment explanation
Indices: 87672781--87673371 Score: 1101
Period size: 47 Copynumber: 12.6 Consensus size: 47
87672771 TATTTGAATA
87672781 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87672828 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87672875 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87672922 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87672969 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87673016 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87673063 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87673110 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87673157 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87673204 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87673251 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
87673298 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
87673345 GATGTGAAAGTGCATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
87673372 TCCCGAAGGG
Statistics
Matches: 533, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 533 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:87673546 original size:37 final size:37
Alignment explanation
Indices: 87673490--87673568 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
87673480 CCGAGCTCTA
* * *
87673490 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
87673527 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
87673564 AAGAC
1 AAGAC
87673569 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:87676955 original size:20 final size:19
Alignment explanation
Indices: 87676926--87676969 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
87676916 ATTAGAATTT
*
87676926 AAAAATTAAATTAAAAACA
1 AAAAATTAAAATAAAAACA
*
87676945 AAAATATTAAAATAAAAATA
1 AAAA-ATTAAAATAAAAACA
87676965 AAAAA
1 AAAAA
87676970 CAACTCAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.20
Consensus pattern (19 bp):
AAAAATTAAAATAAAAACA
Found at i:87678519 original size:7 final size:8
Alignment explanation
Indices: 87678503--87678527 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
87678493 CTTCCATATA
87678503 TTTTATTT
1 TTTTATTT
87678511 TTTTATTT
1 TTTTATTT
87678519 TTTTATTT
1 TTTTATTT
87678527 T
1 T
87678528 AGCCCTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTATTT
Found at i:87678989 original size:4 final size:4
Alignment explanation
Indices: 87678980--87679004 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
87678970 TATTTAATTT
87678980 TTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA T
87679005 ATATTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:87680481 original size:3 final size:3
Alignment explanation
Indices: 87680473--87680511 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
87680463 GGGAATGTAA
87680473 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA
87680512 GTGGAGAAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:87693303 original size:44 final size:45
Alignment explanation
Indices: 87693227--87693795 Score: 466
Period size: 44 Copynumber: 12.9 Consensus size: 45
87693217 AAGTCATTAA
* * * * *
87693227 AGCAGATCTTGTCTTCATGTATTGGCA-TGAAGTAGATCGAGGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87693271 AGTAGGTCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87693315 -GCAGATCTTGTCTTCCCATATTAGTGGCGAGGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87693359 AGCAAATCTTGTC-TCATGTATTGGCA-TGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * *
87693402 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87693446 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * *
87693490 AGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87693534 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGAACGCAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * *
87693578 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * * *
87693622 AGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87693666 A-CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * *
87693710 AGCAGATCTTGTC--CCTGTATTTGGCAGTGGAA-TAGATTGAAGAT
1 AGCAGATCTTGTCTTCCTATA-TTGGTAG-CGAAGTAGATCGAAGAT
* * * * *
87693754 TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGA
1 AGCAGATCTTGTCTTCCTATA-TTGGTAGCGAAGTAGATCGA
87693796 CGATGGCGAA
Statistics
Matches: 409, Mismatches: 99, Indels: 32
0.76 0.18 0.06
Matches are distributed among these distances:
42 11 0.03
43 88 0.22
44 218 0.53
45 72 0.18
46 20 0.05
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (45 bp):
AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
Found at i:87693528 original size:132 final size:132
Alignment explanation
Indices: 87693282--87693761 Score: 598
Period size: 132 Copynumber: 3.7 Consensus size: 132
87693272 GTAGGTCCTA
* * * * * *
87693282 TCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTAGTGGC--
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT--CAT-GTATTGGCGT
* * * * * * * * * *
87693343 GAGGTAGATCGAAGAAAGCAAATCTTGTC-TCATGTATTGGCATGAAGTAGATCGAAGATGCAGA
63 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
87693407 TCTTG
128 TCTTG
87693412 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
*
87693477 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
66 GTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
87693542 TG
131 TG
* *
87693544 TCTTCCCATATTGGTGGCGAAGTAGAACGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
* * * *
87693609 GTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGATCT
66 GTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
87693674 TG
131 TG
* * *
87693676 TCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC--CCTGTATTTGGCAGTG
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA-TTGGC-GT-
* *
87693739 GAA-TAGATTGAAGATTGCAGATC
63 GAAGTAGATCGAAGATAGCAGATC
87693762 TTGCCTTCCT
Statistics
Matches: 310, Mismatches: 32, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
129 6 0.02
130 23 0.07
131 41 0.13
132 237 0.76
133 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (132 bp):
TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
GTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
TG
Found at i:87693673 original size:219 final size:219
Alignment explanation
Indices: 87693225--87693717 Score: 704
Period size: 219 Copynumber: 2.2 Consensus size: 219
87693215 TGAAGTCATT
* * *
87693225 AAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCG-AGGATAGTAGGTCCTATCTTCCT
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGG-TAGCAGATCCTATCTTCCT
* *
87693289 ATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTAGTGGCGAGGTAGATCG
65 ATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTAGTGGCGAAGTAGAACG
* *
87693354 AAGAAAGCAAATCTTGTCTCATGTATTGGCATGAAGTAGATCGAAGATGCAGATCTTGTCTTCCC
130 AAGAAAGCAAATCTTGTCTCATGTATTGGCATGAAGTAGATCGAAGATGCAGATCCTATCTTCCC
* * *
87693419 ATATTGGTGGCGAAGTAGATCGAAG
195 ATATTGATAGCGAAGTAGATCCAAG
87693444 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTA
* *
87693509 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGAACGC
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTAGTGGCGAAGTAGAACGA
* * *
87693574 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCC
131 AGAAAGCAAATCTTGTC-TCATGTATTGGCATGAAGTAGATCGAAGAT-GCAGATCCTATCTTCC
* *
87693639 TATATTGATAG-GAAGTGGATCCAAG
194 CATATTGATAGCGAAGTAGATCCAAG
* *** * * **
87693664 ATA-CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATC
1 AAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATC
87693718 TTGTCCCTGT
Statistics
Matches: 245, Mismatches: 25, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
219 154 0.63
220 70 0.29
221 21 0.09
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (219 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTA
TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTAGTGGCGAAGTAGAACGA
AGAAAGCAAATCTTGTCTCATGTATTGGCATGAAGTAGATCGAAGATGCAGATCCTATCTTCCCA
TATTGATAGCGAAGTAGATCCAAG
Found at i:87693978 original size:130 final size:130
Alignment explanation
Indices: 87693786--87694053 Score: 412
Period size: 130 Copynumber: 2.1 Consensus size: 130
87693776 TTGGCAGCGA
*
87693786 AGCAGATCGACGATGGCGAATTTTACCTCTCCGATTACGGTGGAGTACATTAAAGCCAGTAGTTC
1 AGCAGATCGAAGATGGCGAATTTTACCTCTCCGATTACGGTGGAGTACATTAAAGCCAGTAGTTC
* ** *
87693851 TATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTACAGATCTTATCTCCCTAAGTAATAGTGG
66 TATCTCCCGGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAATAGTGG
* * * **
87693916 AGCAGGTCGAAGATGGCGGATTTTACCTC-CCTGATTACGGTGGAGTACATTGAAGCTGGTAGTT
1 AGCAGATCGAAGATGGCGAATTTTACCTCTCC-GATTACGGTGGAGTACATTAAAGCCAGTAGTT
* *
87693980 CTATCTCTCGGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAGTAGTG
65 CTATCTCCCGGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAATAGTG
87694045 G
130 G
87694046 AGCAGATC
1 AGCAGATC
87694054 ACATCCAGTC
Statistics
Matches: 124, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
129 2 0.02
130 122 0.98
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (130 bp):
AGCAGATCGAAGATGGCGAATTTTACCTCTCCGATTACGGTGGAGTACATTAAAGCCAGTAGTTC
TATCTCCCGGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAATAGTGG
Found at i:87707762 original size:44 final size:45
Alignment explanation
Indices: 87707686--87708254 Score: 466
Period size: 44 Copynumber: 12.9 Consensus size: 45
87707676 AAGTCATTAA
* * * * *
87707686 AGCAGATCTTGTCTTCATGTATTGGCA-TGAAGTAGATCGAGGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87707730 AGTAGGTCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87707774 -GCAGATCTTGTCTTCCCATATTAGTGGCGAGGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87707818 AGCAAATCTTGTC-TCATGTATTGGCA-TGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * *
87707861 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87707905 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * *
87707949 AGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87707993 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGAACGCAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * *
87708037 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * * *
87708081 AGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
87708125 A-CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * *
87708169 AGCAGATCTTGTC--CCTGTATTTGGCAGTGGAA-TAGATTGAAGAT
1 AGCAGATCTTGTCTTCCTATA-TTGGTAG-CGAAGTAGATCGAAGAT
* * * * *
87708213 TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGA
1 AGCAGATCTTGTCTTCCTATA-TTGGTAGCGAAGTAGATCGA
87708255 CGATGGCGAA
Statistics
Matches: 409, Mismatches: 99, Indels: 32
0.76 0.18 0.06
Matches are distributed among these distances:
42 11 0.03
43 88 0.22
44 218 0.53
45 72 0.18
46 20 0.05
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (45 bp):
AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
Found at i:87707987 original size:132 final size:132
Alignment explanation
Indices: 87707741--87708220 Score: 598
Period size: 132 Copynumber: 3.7 Consensus size: 132
87707731 GTAGGTCCTA
* * * * * *
87707741 TCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTAGTGGC--
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT--CAT-GTATTGGCGT
* * * * * * * * * *
87707802 GAGGTAGATCGAAGAAAGCAAATCTTGTC-TCATGTATTGGCATGAAGTAGATCGAAGATGCAGA
63 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
87707866 TCTTG
128 TCTTG
87707871 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
*
87707936 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
66 GTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
87708001 TG
131 TG
* *
87708003 TCTTCCCATATTGGTGGCGAAGTAGAACGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
* * * *
87708068 GTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGATCT
66 GTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
87708133 TG
131 TG
* * *
87708135 TCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC--CCTGTATTTGGCAGTG
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA-TTGGC-GT-
* *
87708198 GAA-TAGATTGAAGATTGCAGATC
63 GAAGTAGATCGAAGATAGCAGATC
87708221 TTGCCTTCCT
Statistics
Matches: 310, Mismatches: 32, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
129 6 0.02
130 23 0.07
131 41 0.13
132 237 0.76
133 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (132 bp):
TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
GTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
TG
Found at i:87708132 original size:219 final size:219
Alignment explanation
Indices: 87707684--87708176 Score: 704
Period size: 219 Copynumber: 2.2 Consensus size: 219
87707674 TGAAGTCATT
* * *
87707684 AAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCG-AGGATAGTAGGTCCTATCTTCCT
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGG-TAGCAGATCCTATCTTCCT
* *
87707748 ATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTAGTGGCGAGGTAGATCG
65 ATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTAGTGGCGAAGTAGAACG
* *
87707813 AAGAAAGCAAATCTTGTCTCATGTATTGGCATGAAGTAGATCGAAGATGCAGATCTTGTCTTCCC
130 AAGAAAGCAAATCTTGTCTCATGTATTGGCATGAAGTAGATCGAAGATGCAGATCCTATCTTCCC
* * *
87707878 ATATTGGTGGCGAAGTAGATCGAAG
195 ATATTGATAGCGAAGTAGATCCAAG
87707903 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTA
* *
87707968 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGAACGC
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTAGTGGCGAAGTAGAACGA
* * *
87708033 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCC
131 AGAAAGCAAATCTTGTC-TCATGTATTGGCATGAAGTAGATCGAAGAT-GCAGATCCTATCTTCC
* *
87708098 TATATTGATAG-GAAGTGGATCCAAG
194 CATATTGATAGCGAAGTAGATCCAAG
* *** * * **
87708123 ATA-CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATC
1 AAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATC
87708177 TTGTCCCTGT
Statistics
Matches: 245, Mismatches: 25, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
219 154 0.63
220 70 0.29
221 21 0.09
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (219 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTA
TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTAGTGGCGAAGTAGAACGA
AGAAAGCAAATCTTGTCTCATGTATTGGCATGAAGTAGATCGAAGATGCAGATCCTATCTTCCCA
TATTGATAGCGAAGTAGATCCAAG
Found at i:87708437 original size:130 final size:130
Alignment explanation
Indices: 87708245--87708512 Score: 412
Period size: 130 Copynumber: 2.1 Consensus size: 130
87708235 TTGGCAGCGA
*
87708245 AGCAGATCGACGATGGCGAATTTTACCTCTCCGATTACGGTGGAGTACATTAAAGCCAGTAGTTC
1 AGCAGATCGAAGATGGCGAATTTTACCTCTCCGATTACGGTGGAGTACATTAAAGCCAGTAGTTC
* ** *
87708310 TATCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTACAGATCTTATCTCCCTAAGTAATAGTGG
66 TATCTCCCGGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAATAGTGG
* * * **
87708375 AGCAGGTCGAAGATGGCGGATTTTACCTC-CCTGATTACGGTGGAGTACATTGAAGCTGGTAGTT
1 AGCAGATCGAAGATGGCGAATTTTACCTCTCC-GATTACGGTGGAGTACATTAAAGCCAGTAGTT
* *
87708439 CTATCTCTCGGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAGTAGTG
65 CTATCTCCCGGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAATAGTG
87708504 G
130 G
87708505 AGCAGATC
1 AGCAGATC
87708513 ACATCCAGTC
Statistics
Matches: 124, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
129 2 0.02
130 122 0.98
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (130 bp):
AGCAGATCGAAGATGGCGAATTTTACCTCTCCGATTACGGTGGAGTACATTAAAGCCAGTAGTTC
TATCTCCCGGGGCAACAGTGGAATAGAGTGAAGAGCACAGATCTTATCTCCCTAAGCAATAGTGG
Found at i:87714279 original size:7 final size:8
Alignment explanation
Indices: 87714264--87714290 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
87714254 TTGAAGAATG
87714264 AACTAAAA
1 AACTAAAA
87714272 AACTAAAA
1 AACTAAAA
87714280 AACTAAAA
1 AACTAAAA
87714288 AAC
1 AAC
87714291 CTATCAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.74, C:0.15, G:0.00, T:0.11
Consensus pattern (8 bp):
AACTAAAA
Found at i:87715465 original size:11 final size:11
Alignment explanation
Indices: 87715449--87715512 Score: 67
Period size: 12 Copynumber: 5.5 Consensus size: 11
87715439 TCAGTGGGGC
87715449 AAAAAAAAAG-
1 AAAAAAAAAGA
87715459 AAAAAAAAAGTA
1 AAAAAAAAAG-A
87715471 AAAAAAAAACGA
1 AAAAAAAAA-GA
*
87715483 GAAAATAAAAAGC
1 -AAAA-AAAAAGA
*
87715496 AAAAAAAAATA
1 AAAAAAAAAGA
87715507 AAAAAA
1 AAAAAA
87715513 CCAAATAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
10 10 0.22
11 11 0.24
12 14 0.30
13 6 0.13
14 5 0.11
ACGTcount: A:0.84, C:0.03, G:0.08, T:0.05
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:87715501 original size:14 final size:12
Alignment explanation
Indices: 87715449--87715528 Score: 56
Period size: 13 Copynumber: 6.2 Consensus size: 12
87715439 TCAGTGGGGC
87715449 AAAAAAAAAG--
1 AAAAAAAAAGAA
87715459 AAAAAAAAAGTAA
1 AAAAAAAAAG-AA
*
87715472 AAAAAAAACGAGA
1 AAAAAAAAAGA-A
*
87715485 AAATAAAAAGCAA
1 AAAAAAAAAG-AA
*
87715498 AAAAAAATAAAAA
1 AAAAAAA-AAGAA
87715511 AACCAAATAAAAGAA
1 AA--AAA-AAAAGAA
87715526 AAA
1 AAA
87715529 CCTCTACTGG
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
10 10 0.18
12 1 0.02
13 30 0.55
14 3 0.05
15 9 0.16
16 2 0.04
ACGTcount: A:0.82, C:0.05, G:0.07, T:0.05
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:87715974 original size:15 final size:13
Alignment explanation
Indices: 87715954--87716014 Score: 59
Period size: 15 Copynumber: 4.2 Consensus size: 13
87715944 TACTTCACTT
87715954 GAAAAAAAACGAAAA
1 GAAAAAAAA--AAAA
87715969 GAAAAATAAAAAAA
1 GAAAAA-AAAAAAA
87715983 TGAAAAAAGAAAAAA
1 -GAAAAAA-AAAAAA
87715998 GAAAAAGAAAAAGAA
1 GAAAAA-AAAAA-AA
87716013 GA
1 GA
87716015 GGCCAAGGTG
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
14 15 0.37
15 23 0.56
16 3 0.07
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.03
Consensus pattern (13 bp):
GAAAAAAAAAAAA
Found at i:87716009 original size:7 final size:7
Alignment explanation
Indices: 87715965--87716009 Score: 58
Period size: 7 Copynumber: 6.4 Consensus size: 7
87715955 AAAAAAAACG
87715965 AAAAGAA
1 AAAAGAA
87715972 AAATA-AA
1 AAA-AGAA
87715979 AAAATGAA
1 AAAA-GAA
87715987 AAAAGAA
1 AAAAGAA
87715994 AAAAG-A
1 AAAAGAA
87716000 AAAAGAA
1 AAAAGAA
87716007 AAA
1 AAA
87716010 GAAGAGGCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 7 0.21
7 20 0.59
8 7 0.21
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.04
Consensus pattern (7 bp):
AAAAGAA
Found at i:87716014 original size:22 final size:22
Alignment explanation
Indices: 87715965--87716009 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
87715955 AAAAAAAACG
87715965 AAAAGAAAAATAAAAAAATGAA
1 AAAAGAAAAATAAAAAAATGAA
*
87715987 AAAAGAAAAA-AGAAAAA-GAA
1 AAAAGAAAAATAAAAAAATGAA
87716007 AAA
1 AAA
87716010 GAAGAGGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 6 0.27
22 10 0.45
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.04
Consensus pattern (22 bp):
AAAAGAAAAATAAAAAAATGAA
Found at i:87724468 original size:22 final size:22
Alignment explanation
Indices: 87724440--87724487 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
87724430 ATGATAGAGA
87724440 TTGAAGTGAAAAACAGACTTGC
1 TTGAAGTGAAAAACAGACTTGC
87724462 TTGAAGTGAAAAACAGACTTGC
1 TTGAAGTGAAAAACAGACTTGC
87724484 TTGA
1 TTGA
87724488 TTAAATCGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (22 bp):
TTGAAGTGAAAAACAGACTTGC
Found at i:87730629 original size:40 final size:40
Alignment explanation
Indices: 87730575--87730797 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
87730565 ATTACCACAA
* ** *
87730575 GCACAATTGCCTTCGGGTCTTAGCCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
87730615 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
87730655 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
87730695 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
87730735 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
87730775 GCACAATTGCCTTCGGGACTTAG
1 GCACAAATGCCTTCGGGTCTTAG
87730798 TTCGGAAAAA
Statistics
Matches: 165, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 161 0.98
41 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:87732809 original size:121 final size:121
Alignment explanation
Indices: 87732595--87732836 Score: 475
Period size: 121 Copynumber: 2.0 Consensus size: 121
87732585 AACTCTCCCC
87732595 CACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATA
1 CACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATA
*
87732660 GAGTTCTCGGGTTCCCAAGTAGCTTCTTCCATCCCATGCTTAAGCCATAACACTTT
66 GAGTTCTCAGGTTCCCAAGTAGCTTCTTCCATCCCATGCTTAAGCCATAACACTTT
87732716 CACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATA
1 CACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATA
87732781 GAGTTCTCAGGTTCCCAAGTAGCTTCTTCCATCCCATGCTTAAGCCATAACACTTT
66 GAGTTCTCAGGTTCCCAAGTAGCTTCTTCCATCCCATGCTTAAGCCATAACACTTT
87732837 AAAACAAGGA
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
121 120 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (121 bp):
CACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATA
GAGTTCTCAGGTTCCCAAGTAGCTTCTTCCATCCCATGCTTAAGCCATAACACTTT
Found at i:87739665 original size:15 final size:14
Alignment explanation
Indices: 87739645--87739689 Score: 63
Period size: 15 Copynumber: 3.1 Consensus size: 14
87739635 TATGATATGG
87739645 AAATATGACATGAGA
1 AAATATGACATGA-A
87739660 AAATATGACATGAA
1 AAATATGACATGAA
*
87739674 AGAATATTACATGAA
1 A-AATATGACATGAA
87739689 A
1 A
87739690 TTCAAGAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
14 2 0.07
15 26 0.93
ACGTcount: A:0.56, C:0.07, G:0.16, T:0.22
Consensus pattern (14 bp):
AAATATGACATGAA
Found at i:87758683 original size:18 final size:18
Alignment explanation
Indices: 87758660--87758705 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
87758650 CTCAATGTAC
87758660 AAAGATAGATATATTGAA
1 AAAGATAGATATATTGAA
87758678 AAAGATAGATATATTGAA
1 AAAGATAGATATATTGAA
87758696 AAAGATAGAT
1 AAAGATAGAT
87758706 TTATAATCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.57, C:0.00, G:0.17, T:0.26
Consensus pattern (18 bp):
AAAGATAGATATATTGAA
Found at i:87761401 original size:180 final size:180
Alignment explanation
Indices: 87761093--87761452 Score: 603
Period size: 180 Copynumber: 2.0 Consensus size: 180
87761083 CCTGTTACAT
* * *
87761093 TCTCAGTTTCAACCACAGTTTCAAGGCATGGGCGTGTCTCATGCCCGTGTTGTTTTGGCAGTTTC
1 TCTCAATTTCAACCACAGTTTCAAGGCACGGGCGTGTCTCATGCCCATGTTGTTTTGGCAGTTTC
*
87761158 GACCACGACCATGTCGCACGACTGTGGTAACTTATTGCATCTCGTGTTGGGGAAAAATCTTGCCC
66 GACCACGACCATGTCGCACGACTGTGGTAACTTATTGCATCCCGTGTTGGGGAAAAATCTTGCCC
* * *
87761223 TATTTTCACATGGTCGTATCGCACGGCCGTTTCTCCACCTATGGTGTGAG
131 TATTTTCACACGGTCGTATCACACGACCGTTTCTCCACCTATGGTGTGAG
* *
87761273 TCTCAATTTCAACCATAGTTTCAAGGCACGGGCGTGTCTCATGCCCATGTTGTTTTGGCAGTTTT
1 TCTCAATTTCAACCACAGTTTCAAGGCACGGGCGTGTCTCATGCCCATGTTGTTTTGGCAGTTTC
* * *
87761338 GACCACGGCCATGTCGCACGACTGTTGTAACTTATTTCATCCCGTGTTGGGGAAAAATCTTGCCC
66 GACCACGACCATGTCGCACGACTGTGGTAACTTATTGCATCCCGTGTTGGGGAAAAATCTTGCCC
*
87761403 TGTTTTCACACGGTCGTATCACACGACCGTTTCTCCACCTATGGTGTGAG
131 TATTTTCACACGGTCGTATCACACGACCGTTTCTCCACCTATGGTGTGAG
87761453 CATGGCCTAA
Statistics
Matches: 167, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
180 167 1.00
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (180 bp):
TCTCAATTTCAACCACAGTTTCAAGGCACGGGCGTGTCTCATGCCCATGTTGTTTTGGCAGTTTC
GACCACGACCATGTCGCACGACTGTGGTAACTTATTGCATCCCGTGTTGGGGAAAAATCTTGCCC
TATTTTCACACGGTCGTATCACACGACCGTTTCTCCACCTATGGTGTGAG
Found at i:87764312 original size:19 final size:19
Alignment explanation
Indices: 87764275--87764312 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
87764265 ACTTGTCAGA
*
87764275 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
87764294 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
87764313 TAAATTACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:87767957 original size:42 final size:42
Alignment explanation
Indices: 87767890--87768011 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
87767880 AGGGTTACTA
* *
87767890 AGATTACGTGTAAGACCATATCTGGGATATGGCATTGATTTG
1 AGATTACATGTAAGACCATATCTGGGATATGGCATTGATATG
* * *
87767932 AGACTT-CATGTAAGACCATAGCTGGGCTATTGGCATCGATATG
1 AGA-TTACATGTAAGACCATATCTGGGATA-TGGCATTGATATG
* * * *
87767975 AGATTACATGCAAGACTATATCTAGGATATAGCATTG
1 AGATTACATGTAAGACCATATCTGGGATATGGCATTG
87768012 GTATAGAACT
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
AGATTACATGTAAGACCATATCTGGGATATGGCATTGATATG
Found at i:87787715 original size:43 final size:44
Alignment explanation
Indices: 87787604--87787715 Score: 126
Period size: 43 Copynumber: 2.6 Consensus size: 44
87787594 ATTGCCAACG
**
87787604 TCCCAGATGTGGTCTTACATGT-AATCAAATATCGATGCGACTA
1 TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCGACTA
* *
87787647 TCCCAGACAGGGTCTTACATG-AAATCAAATAT-GATGCTGA-TG
1 TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGC-GACTA
*
87787689 TCCC-GAACATGGTCTTACACGTAAATC
1 TCCCAG-ACATGGTCTTACATGTAAATC
87787716 TCAAACTGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.02
42 23 0.39
43 35 0.59
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCGACTA
Found at i:87799537 original size:26 final size:26
Alignment explanation
Indices: 87799487--87799539 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
87799477 TATACTCCTC
* *
87799487 ATTCCTGCTATCATTCTCATCAAAAT
1 ATTCCTGCTATCAATCCCATCAAAAT
* *
87799513 ATTCCTGCTATGAATCCCATTAAAAT
1 ATTCCTGCTATCAATCCCATCAAAAT
87799539 A
1 A
87799540 AGGTTTTAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.25, G:0.06, T:0.36
Consensus pattern (26 bp):
ATTCCTGCTATCAATCCCATCAAAAT
Found at i:87801950 original size:23 final size:23
Alignment explanation
Indices: 87801920--87801967 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
87801910 CCGTGAGGTA
87801920 AACCTCGGGTCTCTATTTGAAAT
1 AACCTCGGGTCTCTATTTGAAAT
87801943 AACCTCGGGTCTCTATTTGAAAT
1 AACCTCGGGTCTCTATTTGAAAT
87801966 AA
1 AA
87801968 TCCACAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (23 bp):
AACCTCGGGTCTCTATTTGAAAT
Found at i:87802828 original size:76 final size:76
Alignment explanation
Indices: 87802702--87802842 Score: 273
Period size: 76 Copynumber: 1.9 Consensus size: 76
87802692 CACCATCTCC
*
87802702 GTTGTCGTAGGTTTAACTCCTTTTGAGTCATCAAATACTTGAGGCTTTTATGGTTGGTGAACACT
1 GTTGTCGTAGGTTCAACTCCTTTTGAGTCATCAAATACTTGAGGCTTTTATGGTTGGTGAACACT
87802767 AGGCTTTTATG
66 AGGCTTTTATG
87802778 GTTGTCGTAGGTTCAACTCCTTTTGAGTCATCAAATACTTGAGGCTTTTATGGTTGGTGAACACT
1 GTTGTCGTAGGTTCAACTCCTTTTGAGTCATCAAATACTTGAGGCTTTTATGGTTGGTGAACACT
87802843 CGGCATTTCT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
76 64 1.00
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (76 bp):
GTTGTCGTAGGTTCAACTCCTTTTGAGTCATCAAATACTTGAGGCTTTTATGGTTGGTGAACACT
AGGCTTTTATG
Found at i:87809277 original size:24 final size:24
Alignment explanation
Indices: 87809248--87809310 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
87809238 GGCCTAGCCT
87809248 CTTTTAATAACTGGGGAAAAAACC
1 CTTTTAATAACTGGGGAAAAAACC
* * *
87809272 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGAAAAAACC
87809296 C-TTTAATAACTGGGG
1 CTTTTAATAACTGGGG
87809311 CATAAGCCCT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 14 0.39
24 22 0.61
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (24 bp):
CTTTTAATAACTGGGGAAAAAACC
Found at i:87809304 original size:23 final size:23
Alignment explanation
Indices: 87809250--87809322 Score: 110
Period size: 23 Copynumber: 3.1 Consensus size: 23
87809240 CCTAGCCTCT
* * *
87809250 TTTAATAACTGGGGAAAAAACCC
1 TTTAATAACTGGGGCATAAGCCC
87809273 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
87809297 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87809320 TTT
1 TTT
87809323 TTCACTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 26 0.57
24 20 0.43
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:87809399 original size:20 final size:20
Alignment explanation
Indices: 87809374--87809440 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
87809364 TTGTGATTAG
87809374 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
87809394 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
87809414 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
87809434 ACCATGT
1 ATCATGT
87809441 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:87809405 original size:11 final size:11
Alignment explanation
Indices: 87809374--87809429 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
87809364 TTGTGATTAG
87809374 ATCATGTGCAT
1 ATCATGTGCAT
*
87809385 ATCA--TACAT
1 ATCATGTGCAT
87809394 ATCATGTGCAT
1 ATCATGTGCAT
*
87809405 ATCA--TACAT
1 ATCATGTGCAT
*
87809414 GTCATGTGCAT
1 ATCATGTGCAT
87809425 ATCAT
1 ATCAT
87809430 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:87812055 original size:40 final size:40
Alignment explanation
Indices: 87811820--87812041 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
87811810 AATGATGTCT
* * * *
87811820 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
* *
87811860 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
*
87811900 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
*
87811939 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
87811979 GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
87812019 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
87812042 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 35 0.21
40 118 0.72
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:87812063 original size:119 final size:119
Alignment explanation
Indices: 87811824--87812074 Score: 296
Period size: 119 Copynumber: 2.1 Consensus size: 119
87811814 ATGTCTGGGC
*
87811824 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
* **
87811889 TTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGT
66 TTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGGT
* * * * *
87811943 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGTG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * *
87812006 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGT
64 AGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAATCCGGGT
* *
87812062 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
87812075 TACGTGATTT
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 79 0.70
120 31 0.27
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
TTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGGT
Found at i:87812862 original size:27 final size:27
Alignment explanation
Indices: 87812832--87812885 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
87812822 CTAAAAATAG
87812832 CAGGAAT-AGAATTAAATAGTGAATAAA
1 CAGGAATGA-AATTAAATAGTGAATAAA
87812859 CAGGAATGAAATTAAATAGTGAATAAA
1 CAGGAATGAAATTAAATAGTGAATAAA
87812886 TTATTTAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.56, C:0.04, G:0.19, T:0.22
Consensus pattern (27 bp):
CAGGAATGAAATTAAATAGTGAATAAA
Found at i:87815191 original size:93 final size:93
Alignment explanation
Indices: 87815078--87815249 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
87815068 GCCCCTAAGT
* *
87815078 GAACTCAGACTCAACTCAACGACCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGACCTCGGA-CATTAGCATCCATAAGTGAACTCGGACTCAACTCA
87815142 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* **
87815171 GAACTCGGACTCAACTCAACGAGTTCGGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGACCTCGGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
87815236 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
87815250 CAACCATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGACCTCGGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:87815244 original size:46 final size:47
Alignment explanation
Indices: 87815073--87815245 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 47
87815063 AACCCGCCCC
* ** * *
87815073 TAAGTGAACTCAGACTCAACTCAACGACCTC-GAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTAGCATCCA
*
87815119 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTAGCATCCA
* *
87815167 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTAGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTAGCATCCA
87815212 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
87815246 TGCCCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 1 0.01
45 2 0.02
46 57 0.53
47 31 0.29
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTAGCATCCA
Found at i:87822761 original size:46 final size:46
Alignment explanation
Indices: 87822694--87822819 Score: 225
Period size: 46 Copynumber: 2.7 Consensus size: 46
87822684 AACCCACCCC
* * *
87822694 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
87822740 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
87822786 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
87822820 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:87822838 original size:46 final size:45
Alignment explanation
Indices: 87822696--87822838 Score: 146
Period size: 46 Copynumber: 3.1 Consensus size: 45
87822686 CCCACCCCTA
* ** * *
87822696 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
*** *
87822741 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
87822787 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
87822834 AGTGA
1 AGTGA
87822839 CATGTCACTT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 82 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:87830444 original size:36 final size:37
Alignment explanation
Indices: 87830381--87830453 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 37
87830371 GAAACACGAC
87830381 TCACACGGGTGGACCACACGCCCGTGCCTATTTAACA
1 TCACACGGGTGGACCACACGCCCGTGCCTATTTAACA
* * * *
87830418 TCACATGGGT-GACCACATGTCTGTGCCTATTTAACA
1 TCACACGGGTGGACCACACGCCCGTGCCTATTTAACA
87830454 GGCTTGACCA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 23 0.72
37 9 0.28
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (37 bp):
TCACACGGGTGGACCACACGCCCGTGCCTATTTAACA
Found at i:87833478 original size:48 final size:49
Alignment explanation
Indices: 87833403--87833532 Score: 165
Period size: 48 Copynumber: 2.7 Consensus size: 49
87833393 ACATCAAACT
* * *
87833403 CGATGCCATGTCCTAGACAGGTCTTACACTGACTTTCATATATTGAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGC
* * * *
87833452 CGATGCCGTGTCCCA-ACAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
*
87833500 CAATGCCATGTCCCAGACAGGTCTTACACTGAC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
87833533 ACACAACAAG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
47 1 0.01
48 39 0.57
49 29 0.42
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
Found at i:87833671 original size:25 final size:25
Alignment explanation
Indices: 87833637--87833684 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
87833627 CGTCTCAATA
*
87833637 CCGATGCATGTCCTAGACATGTCTT
1 CCGATGCATGTCCCAGACATGTCTT
*
87833662 CCGATGCATGTCCCATACATGTC
1 CCGATGCATGTCCCAGACATGTC
87833685 ATACACTGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.21, C:0.31, G:0.19, T:0.29
Consensus pattern (25 bp):
CCGATGCATGTCCCAGACATGTCTT
Found at i:87833738 original size:48 final size:48
Alignment explanation
Indices: 87833662--87833790 Score: 222
Period size: 48 Copynumber: 2.7 Consensus size: 48
87833652 GACATGTCTT
* * *
87833662 CCGATGCATGTCCCATACATGTCATACACTGGCTTGTATCTATCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATCTATCGAGG
*
87833710 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATCTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATCTATCGAGG
87833758 CCGATGCATGTCCCAGACATGTCTTACACTAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC
87833791 ACACATATCA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 77 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATCTATCGAGG
Found at i:87846224 original size:20 final size:19
Alignment explanation
Indices: 87846199--87846243 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
87846189 CGGAAAATGA
87846199 TTTCTGAAAAATGATTTACT
1 TTTCTG-AAAATGATTTACT
*
87846219 TTTCTGGAAATGATTTACT
1 TTTCTGAAAATGATTTACT
87846238 TTTCTG
1 TTTCTG
87846244 GTGTTTGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (19 bp):
TTTCTGAAAATGATTTACT
Found at i:87846231 original size:19 final size:19
Alignment explanation
Indices: 87846207--87846244 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
87846197 GATTTCTGAA
87846207 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
87846226 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
87846245 TGTTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:87846346 original size:16 final size:18
Alignment explanation
Indices: 87846325--87846367 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
87846315 CTGTTTTTAC
*
87846325 ATATATTAATAAATTTAT
1 ATATATTAATAAATATAT
87846343 ATATATTAATAAA-AT-T
1 ATATATTAATAAATATAT
*
87846359 ATATTTTAA
1 ATATATTAA
87846368 ATTATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 9 0.39
17 1 0.04
18 13 0.57
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATATTAATAAATATAT
Found at i:87846346 original size:18 final size:18
Alignment explanation
Indices: 87846320--87846362 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
87846310 AAAAACTGTT
*
87846320 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
87846338 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
*
87846356 ATTATAT
1 TTTATAT
87846363 TTTAAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:87849365 original size:37 final size:37
Alignment explanation
Indices: 87849315--87849393 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
87849305 TTATTACGAA
* * *
87849315 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
87849352 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
87849389 GTCTT
1 GTCTT
87849394 TAGACCTCTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:87849590 original size:47 final size:47
Alignment explanation
Indices: 87849512--87850681 Score: 2061
Period size: 47 Copynumber: 24.6 Consensus size: 47
87849502 CCCTTCGGGA
* * * * * *
87849512 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87849559 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87849606 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87849653 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87849700 CTTATCACATATGTATACACTTTCACATTCCTCACATCGGCCATTAGGC
1 CTTATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
87849749 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87849796 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87849843 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87849890 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87849937 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87849984 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87850031 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87850078 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87850125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87850172 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87850219 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87850266 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87850313 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87850360 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87850409 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87850458 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87850507 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87850556 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87850605 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87850654 CTTATCACATGTATATACACTTTCACAT
1 CTTATCACA--TATATACACTTTCACAT
87850682 ATGGGTTTAA
Statistics
Matches: 1095, Mismatches: 18, Indels: 18
0.97 0.02 0.02
Matches are distributed among these distances:
47 749 0.68
49 345 0.32
51 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:87854721 original size:6 final size:6
Alignment explanation
Indices: 87854710--87854734 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
87854700 TTTGTAACCC
87854710 AAGGGG AAGGGG AAGGGG AAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG A
87854735 GAAGAACGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:87854901 original size:14 final size:14
Alignment explanation
Indices: 87854882--87854909 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
87854872 AGAAAAGCCT
87854882 GAAAAGCTTTTACA
1 GAAAAGCTTTTACA
87854896 GAAAAGCTTTTACA
1 GAAAAGCTTTTACA
87854910 CGTTACCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
GAAAAGCTTTTACA
Found at i:87864828 original size:31 final size:32
Alignment explanation
Indices: 87864771--87864832 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
87864761 ACGAAGTCAC
* *
87864771 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
87864803 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
87864833 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:87870911 original size:38 final size:38
Alignment explanation
Indices: 87870781--87870936 Score: 224
Period size: 38 Copynumber: 4.1 Consensus size: 38
87870771 ATGCTAGAAT
*
87870781 TATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
87870819 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCT-GTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* *
87870856 TATATCCGGGTTAAATCTCGCAGGCTTCGTGTTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
** * * *
87870894 TATATCCGGGTTAAATCTTGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
87870932 TATAT
1 TATAT
87870937 TCAGGCCTTG
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
37 34 0.32
38 73 0.68
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.33
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
Found at i:87870917 original size:75 final size:76
Alignment explanation
Indices: 87870781--87870936 Score: 224
Period size: 75 Copynumber: 2.1 Consensus size: 76
87870771 ATGCTAGAAT
* *
87870781 TATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAATATATCTGGGTTAAATCCCGCAGGCTT
1 TATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCT
*
87870846 CGTGCT-GTAA
66 AGTGCTGGTAA
* * * **
87870856 TATATCCGGGTTAAATCTCGCAGGCTTCGTGTTGGTAATATATCCGGGTTAAATCTTGCAGGCCT
1 TATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCT
*
87870921 AGTGCTGGTAT
66 AGTGCTGGTAA
87870932 TATAT
1 TATAT
87870937 TCAGGCCTTG
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
75 63 0.89
76 8 0.11
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.33
Consensus pattern (76 bp):
TATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCT
AGTGCTGGTAA
Found at i:87870987 original size:43 final size:43
Alignment explanation
Indices: 87870934--87871131 Score: 279
Period size: 43 Copynumber: 4.6 Consensus size: 43
87870924 GCTGGTATTA
* * *
87870934 TATTCAGGCCTTGGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
87870977 TATTCTGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * * **
87871020 TATTCTGGCTTTCGTTCCTAGCAGGCTTCGTGCCAATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * **
87871063 TAGTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCTAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
87871106 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
87871132 GTAATGCCGG
Statistics
Matches: 139, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 139 1.00
ACGTcount: A:0.13, C:0.25, G:0.31, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:87880011 original size:42 final size:43
Alignment explanation
Indices: 87879931--87880032 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 43
87879921 TCCTGGACGT
* * **
87879931 GGTCTTACATGTAATTCAATATCGATGCCTTTGTCCCAGACAG
1 GGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAGACAG
*
87879974 GGTCTTACACG-AAATCAAATAT-GATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAAATC-AATATCGATGCCGATGTCCCAGACAG
*
87880016 GGTCTTACAGGTAAATC
1 GGTCTTACACGTAAATC
87880033 TCAAGTCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
42 31 0.61
43 20 0.39
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAGACAG
Found at i:87892789 original size:39 final size:39
Alignment explanation
Indices: 87892734--87892889 Score: 249
Period size: 39 Copynumber: 4.0 Consensus size: 39
87892724 AAGACACTAC
87892734 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
87892773 GAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
87892812 AAATGTATCCGGGCTAAAGTCCAGCAGGTTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
87892851 AAATGTATCCGGGCTAAAGTTCCACAGGCTTTGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
87892890 TAATATAATT
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:87897856 original size:21 final size:21
Alignment explanation
Indices: 87897831--87897872 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
87897821 TCCATTGTTA
87897831 CTCTTTCCCACTTCCATAGCG
1 CTCTTTCCCACTTCCATAGCG
87897852 CTCTTTCCCACTTCCATAGCG
1 CTCTTTCCCACTTCCATAGCG
87897873 GAATTTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.43, G:0.10, T:0.33
Consensus pattern (21 bp):
CTCTTTCCCACTTCCATAGCG
Found at i:87902818 original size:40 final size:40
Alignment explanation
Indices: 87902763--87903020 Score: 362
Period size: 40 Copynumber: 6.5 Consensus size: 40
87902753 TGGATGATAA
* * *
87902763 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
87902803 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA-TCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TACTATAT
87902843 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
87902883 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
87902923 CCGGGCTAAGTCCCGAAGGCATTGGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
87902963 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
87903003 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
87903021 TACTTGGCTT
Statistics
Matches: 200, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
39 17 0.09
40 182 0.91
41 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:87905464 original size:37 final size:37
Alignment explanation
Indices: 87905414--87905488 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
87905404 TAGACATGCA
87905414 TACTGCCATTACCACACTCTAACATCTCGTATAATTT
1 TACTGCCATTACCACACTCTAACATCTCGTATAATTT
87905451 TACTGCCATTACCACACTCTAACATCTCGTATAATTT
1 TACTGCCATTACCACACTCTAACATCTCGTATAATTT
87905488 T
1 T
87905489 GAGAAAACCG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.36
Consensus pattern (37 bp):
TACTGCCATTACCACACTCTAACATCTCGTATAATTT
Found at i:87915214 original size:46 final size:45
Alignment explanation
Indices: 87915146--87915270 Score: 155
Period size: 46 Copynumber: 2.7 Consensus size: 45
87915136 TGTGCGAGCT
**
87915146 AGTGTAAGACCATGTCTGGGACATGCATCGGCTATGAGATGATAGTC
1 AGTGTAAGACTGTGTCTGGGACATGCATCGGC-ATGAGAT-ATAGTC
* *
87915193 AGTGTAAGGCT-TGTCTGGGACATAG-ATTCGACATGAGATATAGTC
1 AGTGTAAGACTGTGTCTGGGACAT-GCA-TCGGCATGAGATATAGTC
*
87915238 AGTGTAAGACTGTGTCTGGGACACGCATCGGCA
1 AGTGTAAGACTGTGTCTGGGACATGCATCGGCA
87915271 CCTAACTCCA
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 22 0.32
46 32 0.47
47 14 0.21
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (45 bp):
AGTGTAAGACTGTGTCTGGGACATGCATCGGCATGAGATATAGTC
Found at i:87917868 original size:18 final size:20
Alignment explanation
Indices: 87917847--87917892 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
87917837 TCGTAATTAC
87917847 AATGAAAATAATAAT-A-AT
1 AATGAAAATAATAATAACAT
* *
87917865 AATGCAAGTAATAATAACAT
1 AATGAAAATAATAATAACAT
87917885 AATGAAAA
1 AATGAAAA
87917893 CCTTATTACA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 13 0.59
19 1 0.05
20 8 0.36
ACGTcount: A:0.63, C:0.04, G:0.09, T:0.24
Consensus pattern (20 bp):
AATGAAAATAATAATAACAT
Found at i:87918808 original size:29 final size:29
Alignment explanation
Indices: 87918755--87918850 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
87918745 TGCATCTGGG
* * *
87918755 CCATTAAGCCC-AACCATATTCATATGGC
1 CCATTAGGCCCAAACCACATTTATATGGC
*
87918783 CCATTAGGCCCAAACCACCTTTATATGGC
1 CCATTAGGCCCAAACCACATTTATATGGC
*
87918812 CCATTAGGCCCAAATCACATTTATATGGC
1 CCATTAGGCCCAAACCACATTTATATGGC
*
87918841 CCGTTAGGCC
1 CCATTAGGCC
87918851 TAGTCACATT
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
28 10 0.17
29 50 0.83
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
CCATTAGGCCCAAACCACATTTATATGGC
Found at i:87924140 original size:46 final size:47
Alignment explanation
Indices: 87924059--87924175 Score: 134
Period size: 46 Copynumber: 2.5 Consensus size: 47
87924049 CATAAACTAG
* ** *
87924059 TGTAAGACATGTCTGGGACAT-GCGTTGGCTATGAGATGAT-AGTCAA
1 TGTAAGACCTGTCTGGGACATGGCGTTAACTATGAGAT-ATAAGCCAA
*
87924105 TGTAAGACCTGTCTGGGACATGGC-TTCAACT-TGAGATATAAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCGTT-AACTATGAGATATAAGCCAA
87924151 TGTAAGACCGTGTCTGGGACATGGC
1 TGTAAGACC-TGTCTGGGACATGGC
87924176 ATCGGCACCT
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
45 2 0.03
46 41 0.66
47 19 0.31
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (47 bp):
TGTAAGACCTGTCTGGGACATGGCGTTAACTATGAGATATAAGCCAA
Found at i:87925786 original size:44 final size:44
Alignment explanation
Indices: 87925735--87925845 Score: 143
Period size: 44 Copynumber: 2.5 Consensus size: 44
87925725 ACAATGCGGC
* *
87925735 GTCCCAGACGTGGTCTTACATGTAATCAC-ATATCGATGCCACAT
1 GTCCCAGACGTGGTCTTACATGTAACCACAATATCAATGCCA-AT
* * *
87925779 GTCCCAGACATGGTCTTACACGTAACCACAAATATTAATGCCAAT
1 GTCCCAGACGTGGTCTTACATGTAACCAC-AATATCAATGCCAAT
*
87925824 GTCCTAGACGTGGTCTTACATG
1 GTCCCAGACGTGGTCTTACATG
87925846 AGAACACATA
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 26 0.46
45 21 0.37
46 10 0.18
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
GTCCCAGACGTGGTCTTACATGTAACCACAATATCAATGCCAAT
Found at i:87927000 original size:14 final size:15
Alignment explanation
Indices: 87926983--87927014 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
87926973 AAATCACGAA
87926983 AAATTCACACAT-AT
1 AAATTCACACATAAT
87926997 AAATTCACACATAAT
1 AAATTCACACATAAT
87927012 AAA
1 AAA
87927015 AACTGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (15 bp):
AAATTCACACATAAT
Found at i:87931413 original size:122 final size:123
Alignment explanation
Indices: 87931195--87931441 Score: 451
Period size: 122 Copynumber: 2.0 Consensus size: 123
87931185 TAAATTTTTC
*
87931195 TAAAGCTGCATCTTTTGAAAACAAAAACGAAAACCCATGTATATCTAGAATAGTCATCAACAATA
1 TAAAGCTGCATCTTTTGAAAACAAAAACGAAAACCCATGTATATCTAGAAGAGTCATCAACAATA
*
87931260 ACAAATCCATATTGTTTACTTCCTACACTCATAGTTCTAGTGGGTCCAAAAAGGTCAA
66 ACAAATCCATATTGTTTACCTCCTACACTCATAGTTCTAGTGGGTCCAAAAAGGTCAA
* *
87931318 TAAAGCTTCATCTTTTGAAAACAAAAA-GAAAACCCATGTATATCTAGAAGAGTCTTCAACAATA
1 TAAAGCTGCATCTTTTGAAAACAAAAACGAAAACCCATGTATATCTAGAAGAGTCATCAACAATA
87931382 ACAAATCCATATTGTTTACCTCCTACACTCATAGTTCTAGTGGGTCCAAAAAGGTCAA
66 ACAAATCCATATTGTTTACCTCCTACACTCATAGTTCTAGTGGGTCCAAAAAGGTCAA
87931440 TA
1 TA
87931442 TGAATAAGTT
Statistics
Matches: 120, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
122 94 0.78
123 26 0.22
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (123 bp):
TAAAGCTGCATCTTTTGAAAACAAAAACGAAAACCCATGTATATCTAGAAGAGTCATCAACAATA
ACAAATCCATATTGTTTACCTCCTACACTCATAGTTCTAGTGGGTCCAAAAAGGTCAA
Found at i:87933081 original size:48 final size:48
Alignment explanation
Indices: 87933010--87933248 Score: 268
Period size: 48 Copynumber: 5.0 Consensus size: 48
87933000 GAGGGTAAAT
* * ** *
87933010 TGCCGATGCCATGTCCCAGACATGGACTTACACTAGCTTTTGTCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAA
* * *
87933058 TGCCGATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCAT-T-ATG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA-A
* * *
87933105 TGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAA
* ** *
87933154 TGCCAACACCATGTCCTAGACATGGTCTTACACTAGCTCTCATATC-A
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAA
* * *
87933201 TGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
87933249 CCCAAATGTC
Statistics
Matches: 159, Mismatches: 26, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
46 1 0.01
47 4 0.03
48 151 0.95
49 2 0.01
50 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAA
Found at i:87933178 original size:96 final size:96
Alignment explanation
Indices: 87933011--87933248 Score: 307
Period size: 96 Copynumber: 2.5 Consensus size: 96
87933001 AGGGTAAATT
* ***** * * **
87933011 GCCGATGCCATGTCCCAGACATGGACTTACACTAGCTTTTGTCTCAATGCCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCCAACACCATGTCCCA
* *
87933076 GACATGGCCTTACACTGGCTCTCATTAT-GTG
66 GACATGGCCTTACACTAGCTCTCA-TATCATG
* * *
87933107 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCCAACACCATGTCCTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCCAACACCATGTCCCA
*
87933172 GACATGGTCTTACACTAGCTCTCATATCATG
66 GACATGGCCTTACACTAGCTCTCATATCATG
*
87933203 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
87933249 CCCAAATGTC
Statistics
Matches: 123, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
95 3 0.02
96 120 0.98
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCCAACACCATGTCCCA
GACATGGCCTTACACTAGCTCTCATATCATG
Found at i:87935230 original size:81 final size:81
Alignment explanation
Indices: 87935115--87935496 Score: 409
Period size: 81 Copynumber: 4.8 Consensus size: 81
87935105 ACTGGTTTAT
* * * * *
87935115 AAAATTACCGAAATATCGTTGA-TTGTAAAATTATTGAAATACCCTCGATTTGTAAAAGTACCGA
1 AAAATTACTGAAATACCCTTGATTTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCGA
*
87935179 AATATCCTCAGTTTGC
66 AATACCCTCAGTTTGC
* *
87935195 AAAATTACTAAAATACCCTGGATTTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACC-A
1 AAAATTACTGAAATACCCTTGATTTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCGA
* **
87935259 AAGTACCC-CTGGTTTAT
66 AA-TACCCTC-AGTTTGC
** * * ** * *
87935276 AAAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAATACCGTCGA-TTGTAAAATTACTGA
1 AAAATTACTGAAATACCCTTGATTTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCGA
* *
87935340 AATACCCT-TGATTTGT
66 AATACCCTCAG-TTTGC
** * * *
87935356 AAAATTA-TCGAAATACGGTTGA-TTGTAAAATTATTGAAATACCCTCGATTTGTAAAATTATCA
1 AAAATTACT-GAAATACCCTTGATTTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCG
87935419 AAATACCCTCAGTTTGC
65 AAATACCCTCAGTTTGC
* * * *
87935436 AAAATTACTGAAATATCCTTGATTTATAAAATTACTAAAATACCCTCGACTTGTAAAATTA
1 AAAATTACTGAAATACCCTTGATTTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTA
87935497 ACAAAGTACC
Statistics
Matches: 249, Mismatches: 42, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
79 24 0.10
80 98 0.39
81 127 0.51
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (81 bp):
AAAATTACTGAAATACCCTTGATTTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCGA
AATACCCTCAGTTTGC
Found at i:87935539 original size:241 final size:243
Alignment explanation
Indices: 87935088--87935550 Score: 671
Period size: 241 Copynumber: 1.9 Consensus size: 243
87935078 AGTTTACCAC
*
87935088 ATTACTGAAATACCCCTACTGGTTTATAAAATTACCGAAATATCGTTGATTGTAAAATTATTGAA
1 ATTACTGAAATACCCCTA-TGATTTATAAAATTACCGAAATATCGTTGATTGTAAAATTATTGAA
* *
87935153 ATACCCTCGATTTGTAAAAGTACCGAAATATCCTCAGTTTGCAAAATTACTAAAATACCCTGGAT
65 ATACCCTCGATTTGTAAAAGTACCAAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTGGAT
* * * * * *
87935218 TTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGGTTTATAAAATTA
130 TTATAAAATTACTAAAATACCCTCGACTTGTAAAATTAACAAAGTACCCCCGATTTATAAAATTA
* * **
87935283 CCCAAATATCCTCGATTTGTAAAATTACCGAAATACCGTCGATTGTAAA
195 CACAAATACCCTCGATTTACAAAATTACCGAAATACCGTCGATTGTAAA
* *
87935332 ATTACTGAAATA-CCCT-TGATTTGTAAAATTATCGAAATA-CGGTTGATTGTAAAATTATTGAA
1 ATTACTGAAATACCCCTATGATTTATAAAATTACCGAAATATC-GTTGATTGTAAAATTATTGAA
* * * * *
87935394 ATACCCTCGATTTGTAAAATTATCAAAATACCCTCAGTTTGCAAAATTACTGAAATATCCTTGAT
65 ATACCCTCGATTTGTAAAAGTACCAAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTGGAT
*
87935459 TTATAAAATTACTAAAATACCCTCGACTTGTAAAATTAACAAAGTACCCCCGATTTATAGAATTA
130 TTATAAAATTACTAAAATACCCTCGACTTGTAAAATTAACAAAGTACCCCCGATTTATAAAATTA
* **
87935524 CAGATTTACCCTCGATTTACAAAATTA
195 CACAAATACCCTCGATTTACAAAATTA
87935551 TTAAAATACC
Statistics
Matches: 194, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
240 1 0.01
241 177 0.91
243 4 0.02
244 12 0.06
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (243 bp):
ATTACTGAAATACCCCTATGATTTATAAAATTACCGAAATATCGTTGATTGTAAAATTATTGAAA
TACCCTCGATTTGTAAAAGTACCAAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTGGATT
TATAAAATTACTAAAATACCCTCGACTTGTAAAATTAACAAAGTACCCCCGATTTATAAAATTAC
ACAAATACCCTCGATTTACAAAATTACCGAAATACCGTCGATTGTAAA
Found at i:87935561 original size:27 final size:27
Alignment explanation
Indices: 87935114--87935550 Score: 359
Period size: 27 Copynumber: 16.3 Consensus size: 27
87935104 TACTGGTTTA
* * *
87935114 TAAAATTACCGAAATATCGTTGA-TTG
1 TAAAATTACCGAAATACCCTCGATTTG
**
87935140 TAAAATTATTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
* *
87935167 TAAAAGTACCGAAATATCCTC-AGTTTG
1 TAAAATTACCGAAATACCCTCGA-TTTG
* ** *
87935194 CAAAATTACTAAAATACCCTGGATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
** *
87935221 TAAAATTATTGAAATACCCTCGACTTG
1 TAAAATTACCGAAATACCCTCGATTTG
* *
87935248 TAAAATTACC-AAAGTACCC-CTGGTTTA
1 TAAAATTACCGAAA-TACCCTC-GATTTG
* *
87935275 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
*
87935302 TAAAATTACCGAAATACCGTCGA-TTG
1 TAAAATTACCGAAATACCCTCGATTTG
* *
87935328 TAAAATTACTGAAATACCCTTGATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
* ** *
87935355 TAAAATTATCGAAATACGGTTGA-TTG
1 TAAAATTACCGAAATACCCTCGATTTG
**
87935381 TAAAATTATTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
* *
87935408 TAAAATTATCAAAATACCCTC-AGTTTG
1 TAAAATTACCGAAATACCCTCGA-TTTG
* * * * *
87935435 CAAAATTACTGAAATATCCTTGATTTA
1 TAAAATTACCGAAATACCCTCGATTTG
** *
87935462 TAAAATTACTAAAATACCCTCGACTTG
1 TAAAATTACCGAAATACCCTCGATTTG
* * *
87935489 TAAAATTAAC-AAAGTACCCCCGATTTA
1 TAAAATTACCGAAA-TACCCTCGATTTG
* * ** *
87935516 TAGAATTACAGATTTACCCTCGATTTA
1 TAAAATTACCGAAATACCCTCGATTTG
*
87935543 CAAAATTA
1 TAAAATTA
87935551 TTAAAATACC
Statistics
Matches: 328, Mismatches: 70, Indels: 25
0.78 0.17 0.06
Matches are distributed among these distances:
26 72 0.22
27 249 0.76
28 7 0.02
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATTTG
Found at i:87935584 original size:27 final size:27
Alignment explanation
Indices: 87935554--87935914 Score: 416
Period size: 27 Copynumber: 13.4 Consensus size: 27
87935544 AAAATTATTA
* *
87935554 AAATACCCCTATAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAAATACCG
87935581 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAAATACCG
* * *
87935608 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAAATACCG
* *
87935635 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAAATACCG
*
87935662 AAATACCCTTGTAGGGTTGAAATACCG
1 AAATACCCTTGTAGGGTAGAAATACCG
* * *
87935689 AAAGACCCTTGTAGGGTAAAAATACCA
1 AAATACCCTTGTAGGGTAGAAATACCG
* * * **
87935716 AAATACCCCTGTAAGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAAATACCG
* * * *
87935743 AAATACCCTTATAGGATAGAAATGCTG
1 AAATACCCTTGTAGGGTAGAAATACCG
**
87935770 AAATACCCTTGTAGGGTAGAAATATTG
1 AAATACCCTTGTAGGGTAGAAATACCG
* * * *
87935797 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAAATACCG
* *
87935824 AAATACCCTTGTAGGATAGAATTACCG
1 AAATACCCTTGTAGGGTAGAAATACCG
*
87935851 AAATACCCTTATAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAAATACCG
* * *
87935878 AAATACCCCTGTAGGGTGGAATTACCG
1 AAATACCCTTGTAGGGTAGAAATACCG
* *
87935905 AGATGCCCTT
1 AAATACCCTT
87935915 ATGACAGCCC
Statistics
Matches: 284, Mismatches: 50, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 284 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAAATACCG
Found at i:87935859 original size:81 final size:81
Alignment explanation
Indices: 87935554--87935914 Score: 488
Period size: 81 Copynumber: 4.5 Consensus size: 81
87935544 AAAATTATTA
* * * *
87935554 AAATACCCCTATAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGATAGAAATACCGAAATACCCTTG
*
87935619 TAGGGTAGAATTACTG
66 TAGGGTAGAAATACTG
* * *
87935635 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTTGAAATACCGAAAGACCCTTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGATAGAAATACCGAAATACCCTTG
* **
87935700 TAGGGTAAAAATACCA
66 TAGGGTAGAAATACTG
* ** * * *
87935716 AAATACCCCTGTAAGGTAGAATTATTGAAATACCCTTATAGGATAGAAATGCTGAAATACCCTTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGATAGAAATACCGAAATACCCTTG
*
87935781 TAGGGTAGAAATATTG
66 TAGGGTAGAAATACTG
* * * *
87935797 AAATACCCCTATAGGGTAGAATTACTGAAATACCCTTGTAGGATAGAATTACCGAAATACCCTTA
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGATAGAAATACCGAAATACCCTTG
*
87935862 TAGGGTAGAAATACCG
66 TAGGGTAGAAATACTG
* * *
87935878 AAATACCCCTGTAGGGTGGAATTACCGAGATGCCCTT
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTT
87935915 ATGACAGCCC
Statistics
Matches: 243, Mismatches: 37, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 243 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGATAGAAATACCGAAATACCCTTG
TAGGGTAGAAATACTG
Found at i:87937789 original size:40 final size:40
Alignment explanation
Indices: 87937695--87937919 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
87937685 TATTCGAATG
* * * *
87937695 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * * *
87937736 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
* *
87937776 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* *
87937816 ATATCCGGGCTAAAACCCAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
87937856 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
87937896 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
87937920 CTTGTGCAAG
Statistics
Matches: 154, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 125 0.81
41 28 0.18
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:87937875 original size:80 final size:80
Alignment explanation
Indices: 87937695--87937955 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 80
87937685 TATTCGAATG
* * * * *
87937695 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
87937760 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * * *
87937776 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCAAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
87937841 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
87937856 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
87937921 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
* *
87937935 ATATCC-GGCTAAATCCTGAAG
1 ATATCCGGGCTAAGTCCCGAAG
87937956 ATTTCTTGAG
Statistics
Matches: 149, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
78 13 0.09
79 14 0.09
80 92 0.62
81 30 0.20
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:87937909 original size:120 final size:121
Alignment explanation
Indices: 87937695--87937919 Score: 285
Period size: 120 Copynumber: 1.9 Consensus size: 121
87937685 TATTCGAATG
** * * *
87937695 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGAGCTAAAACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * *
87937760 ATTCGTGCGAGTTGCTATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * *
87937816 ATATCCGGGCTAAAACCCAAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGAGCTAAAACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
87937879 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
87937920 CTTGTGCAAG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 3 0.03
120 56 0.64
121 29 0.33
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGAGCTAAAACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:87939814 original size:22 final size:22
Alignment explanation
Indices: 87939766--87939826 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
87939756 AGCCTTCTGA
* *
87939766 TTATGGCTTTGCGCCAACCTAC
1 TTATGGCTATGTGCCAACCTAC
* * **
87939788 ATATGGCTCTGTGCCAACCTGT
1 TTATGGCTATGTGCCAACCTAC
87939810 TTATGGCTATGTGCCAA
1 TTATGGCTATGTGCCAA
87939827 ACGTATTTGC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (22 bp):
TTATGGCTATGTGCCAACCTAC
Found at i:87939997 original size:25 final size:26
Alignment explanation
Indices: 87939977--87940032 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
87939967 TGCCACGTAT
*
87939977 TCTGTT-AAGTGGCTTTGCCACATTA
1 TCTGTTCAAGTGGCTCTGCCACATTA
* *
87940002 TCTGTTCTAGTGGCTCTGCCACAATA
1 TCTGTTCAAGTGGCTCTGCCACATTA
87940028 TCTGT
1 TCTGT
87940033 ATCTGGTGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (26 bp):
TCTGTTCAAGTGGCTCTGCCACATTA
Found at i:87940021 original size:26 final size:26
Alignment explanation
Indices: 87939984--87940062 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 26
87939974 TATTCTGTTA
* *
87939984 AGTGGCTTTGCCACATTATCTGTTCT
1 AGTGGCTCTGCCACAATATCTGTTCT
87940010 AGTGGCTCTGCCACAATATCTGTATCT
1 AGTGGCTCTGCCACAATATCTGT-TCT
* * * *
87940037 GGTGACTCTGTCACAATATTTGTTCT
1 AGTGGCTCTGCCACAATATCTGTTCT
87940063 GGCAGCCATG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 24 0.52
27 22 0.48
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (26 bp):
AGTGGCTCTGCCACAATATCTGTTCT
Found at i:87940051 original size:27 final size:26
Alignment explanation
Indices: 87939992--87940064 Score: 92
Period size: 27 Copynumber: 2.8 Consensus size: 26
87939982 TAAGTGGCTT
* * *
87939992 TGCCACATTATCTGTTCTAGTGGCTC
1 TGCCACAATATCTGTTCTGGTGACTC
87940018 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTC
* *
87940045 TGTCACAATATTTGTTCTGG
1 TGCCACAATATCTGTTCTGG
87940065 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:87940216 original size:25 final size:25
Alignment explanation
Indices: 87940182--87940242 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
87940172 TTGCATTCAC
*
87940182 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTCACCTGATACTG
**
87940207 ATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTCTGTCACCTGATACTG
*
87940232 ATTCTAATTCT
1 ATTCTGATTCT
87940243 CGATTTGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGTCACCTGATACTG
Found at i:87940587 original size:11 final size:11
Alignment explanation
Indices: 87940571--87940601 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
87940561 TATGTGGGTT
87940571 GTAGTAAAGTC
1 GTAGTAAAGTC
87940582 GTAGTAAAGTC
1 GTAGTAAAGTC
87940593 GTAGTAAAG
1 GTAGTAAAG
87940602 CCGCAACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.39, C:0.06, G:0.29, T:0.26
Consensus pattern (11 bp):
GTAGTAAAGTC
Found at i:87941680 original size:49 final size:49
Alignment explanation
Indices: 87941625--87941869 Score: 242
Period size: 49 Copynumber: 4.9 Consensus size: 49
87941615 TAGCCAAAGC
* * * *
87941625 TATCTGGTACGCATAGTATCCTGCACTTAGTACTACACA-TTCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGT-GACCAAT
* * *
87941674 TATCTGGTACACGTAGTAGTCTGCACTTAGTACTATACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * *
87941724 CATCTGATACACGTAGTAGCCTGCACTTTGTAATACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * * *
87941775 TATC-GAGTACTCATAGGAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTG-GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
87941824 AATCCGGTACACGTAGTAGCCCGCACTTAGTACTACATACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
87941870 TCACAATAGA
Statistics
Matches: 157, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
49 75 0.48
50 48 0.31
51 34 0.22
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:87954679 original size:20 final size:20
Alignment explanation
Indices: 87954642--87954680 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
87954632 TTCTCATATT
* *
87954642 AATCTCGTTGAATTTCTCAG
1 AATCTCGGTGAATATCTCAG
*
87954662 AATCTCGGTGGATATCTCA
1 AATCTCGGTGAATATCTCA
87954681 TTCACTATCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (20 bp):
AATCTCGGTGAATATCTCAG
Found at i:87968930 original size:46 final size:45
Alignment explanation
Indices: 87968863--87969037 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
87968853 TGTAACCCGC
87968863 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * *
87968909 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * *
87968955 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
87969002 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
87969038 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:87968983 original size:93 final size:93
Alignment explanation
Indices: 87968871--87969042 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
87968861 GCCCATAAGT
* * * *
87968871 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
87968936 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
87968964 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
87969029 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
87969043 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Done.